RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3667
(266 letters)
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 210 bits (536), Expect = 4e-63
Identities = 67/185 (36%), Positives = 97/185 (52%), Gaps = 30/185 (16%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSH-SQHAKFKKTDFRGVADFAIVHYAGK---- 76
P GI+ALLDE+ FP ATD + + KL ++AK+++ F +F + HYAG+
Sbjct: 522 PPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFSK-TEFGVTHYAGQVMYE 580
Query: 77 --GM--------FRTVSQLYKEQLTKLMVTLRNTNPNFVRCIIPNHEKRAGIPRVLG--- 123
+ + +K+ ++ L F I + K+ +
Sbjct: 581 IQDWLEKNKDPLQQDLELCFKDSSDNVVTKL------FNDPNIASRAKKGANFITVAAQY 634
Query: 124 -----RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPN 178
LM TL TNP+FVRCIIPN+++ K++ +VLDQLRCNGVLEGIRI R+GFPN
Sbjct: 635 KEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPN 694
Query: 179 RIPFQ 183
RI +
Sbjct: 695 RIIYA 699
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 211 bits (538), Expect = 1e-62
Identities = 67/185 (36%), Positives = 97/185 (52%), Gaps = 30/185 (16%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSH-SQHAKFKKTDFRGVADFAIVHYAGK---- 76
P GI+ALLDE+ FP ATD + + KL ++AK+++ F +F + HYAG+
Sbjct: 522 PPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFSK-TEFGVTHYAGQVMYE 580
Query: 77 --GM--------FRTVSQLYKEQLTKLMVTLRNTNPNFVRCIIPNHEKRAGIPRVLG--- 123
+ + +K+ ++ L F I + K+ +
Sbjct: 581 IQDWLEKNKDPLQQDLELCFKDSSDNVVTKL------FNDPNIASRAKKGANFITVAAQY 634
Query: 124 -----RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPN 178
LM TL TNP+FVRCIIPN+++ K++ +VLDQLRCNGVLEGIRI R+GFPN
Sbjct: 635 KEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPN 694
Query: 179 RIPFQ 183
RI +
Sbjct: 695 RIIYA 699
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 203 bits (519), Expect = 4e-61
Identities = 52/193 (26%), Positives = 85/193 (44%), Gaps = 29/193 (15%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDF-----RGVADFAIVHYAGK 76
P+G+++LLDE C K+TD++F++ + + ++ + G F + HYAG
Sbjct: 452 PIGLISLLDEACLIAKSTDQTFLDSICKQFEKNPHLQSYVVSKDRSIGDTCFRLKHYAGD 511
Query: 77 GMFRTVSQLYK------EQLTKLMVTLRNTNPNFVRCIIPNHEKRAGIPRV--------- 121
+ L K L M ++++ V+ + P R
Sbjct: 512 VTYDVRGFLDKNKDTLFGDLISSM---QSSSDPLVQGLFPPTRPEDSKKRPETAGSQFRN 568
Query: 122 -LGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRI 180
+ L+ TL +P++VRCI N K+AG ID V Q+R G+LE +R+ R GF RI
Sbjct: 569 AMNALITTLLACSPHYVRCIKSNDNKQAGVIDEDRVRHQVRYLGLLENVRVRRAGFAGRI 628
Query: 181 PFQMSVPQPFLFR 193
+ F R
Sbjct: 629 EY-----TRFYNR 636
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 203 bits (519), Expect = 1e-60
Identities = 45/197 (22%), Positives = 78/197 (39%), Gaps = 41/197 (20%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKK---------TDFRGVADFAIVH 72
+GI+ +LDEE P+ +D+ F + Q H H + + R F I H
Sbjct: 518 LVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRH 577
Query: 73 YAGK------GM--------FRTVSQLYKEQLTKLMVTLRNTNPNFVRCIIPNHEKRAGI 118
+AG ++ L E K + L F N + +
Sbjct: 578 FAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIREL------FESSTNNNKDTKQKA 631
Query: 119 PRV------------LGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVL 166
++ L L+ LR+T +F+RCI PN + + + +L QL+C+G++
Sbjct: 632 GKLSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMV 691
Query: 167 EGIRICRQGFPNRIPFQ 183
+ + + GFP+R F
Sbjct: 692 SVLDLMQGGFPSRASFH 708
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 204 bits (522), Expect = 2e-60
Identities = 64/259 (24%), Positives = 96/259 (37%), Gaps = 58/259 (22%)
Query: 10 KYILFFFN-----LLFSPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRG 64
I F+ N L+ + MG++ LLDEEC PK +D ++ +KL +H +
Sbjct: 485 TLIDFYDNQPCINLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLS 544
Query: 65 VADFAIVHYAGK---------------------GMFRT------VSQLYKEQLTKLMVTL 97
F I H+A K + ++ + +L++++ + T
Sbjct: 545 NKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTS 604
Query: 98 RNTNPNFVRCIIPNHEKRAGIPRV---------------LGRLMVTLRNTNPNFVRCIIP 142
+ P +A + L LM TL T P++VRCI P
Sbjct: 605 ATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKP 664
Query: 143 NHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQMSVPQPFLFR------SNS 196
N K D + QLR GVLE IRI GFP+R + Q F R
Sbjct: 665 NDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTY-----QEFFSRYRVLMKQKD 719
Query: 197 VRSEFDSGVVEVFSALCLE 215
V S+ V L L+
Sbjct: 720 VLSDRKQTCKNVLEKLILD 738
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 204 bits (520), Expect = 3e-60
Identities = 90/214 (42%), Positives = 113/214 (52%), Gaps = 40/214 (18%)
Query: 10 KYILFFFNL---------LFSPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKT 60
++ F +L +P G++ALLDEECWFPKATD+SFVEK+ Q H KF++
Sbjct: 481 TFLDFGLDLQPCIDLIERPANPPGLLALLDEECWFPKATDKSFVEKVAQEQGGHPKFQRP 540
Query: 61 DF-RGVADFAI------VHYAGKG--------MFRTVSQLYKEQLTKLMVTL-------- 97
R ADF++ V Y + V+ L + +L +
Sbjct: 541 RHLRDQADFSVLHYAGKVDYKANEWLMKNMDPLNDNVAALLHQSTDRLTAEIWKDVEGIV 600
Query: 98 -RNTNPNFVRCIIPNHEKRAGIPRV-------LGRLMVTLRNTNPNFVRCIIPNHEKRAG 149
+ +R V L RLM TL NTNP+FVRCI+PNHEKRAG
Sbjct: 601 GLEQVSSLGDGPPGGRPRRGMFRTVGQLYKESLSRLMATLSNTNPSFVRCIVPNHEKRAG 660
Query: 150 KIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQ 183
K++ LVLDQLRCNGVLEGIRICRQGFPNRI FQ
Sbjct: 661 KLEPRLVLDQLRCNGVLEGIRICRQGFPNRILFQ 694
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 196 bits (501), Expect = 3e-58
Identities = 85/208 (40%), Positives = 112/208 (53%), Gaps = 34/208 (16%)
Query: 10 KYILFFFNL-----LF-SPMGIMALLDEECWFPKATDRSFVEKLVQSH-SQHAKFKK--- 59
+I F +L L PMGIM++L+EEC FPKATD +F KL +H + A F+K
Sbjct: 509 TFIDFGMDLQACIDLIEKPMGIMSILEEECMFPKATDMTFKAKLFDNHLGKSANFQKPRN 568
Query: 60 TDFRGVADFAIVHYAGK------GM--------FRTVSQLYKEQLTKLMVTL---RNTNP 102
+ A F+++HYAG G TV LY++ KL+ TL
Sbjct: 569 IKGKPEAHFSLIHYAGIVDYNIIGWLQKNKDPLNETVVGLYQKSSLKLLSTLFANYAGAD 628
Query: 103 NFVRCIIPNHEKRAGIPRV-------LGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPL 155
+ +K + V L +LM LR+T+P+FVRCIIPN K G +D PL
Sbjct: 629 APIEKGKGKAKKGSSFQTVSALHRENLNKLMTNLRSTHPHFVRCIIPNETKSPGVMDNPL 688
Query: 156 VLDQLRCNGVLEGIRICRQGFPNRIPFQ 183
V+ QLRCNGVLEGIRICR+GFPNRI +
Sbjct: 689 VMHQLRCNGVLEGIRICRKGFPNRILYG 716
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 194 bits (495), Expect = 4e-57
Identities = 79/217 (36%), Positives = 108/217 (49%), Gaps = 38/217 (17%)
Query: 10 KYILFFFNL-----LF-SPMGIMALLDEECWFPKATDRSFVEKLVQSH-SQHAKFKKTDF 62
++I F +L L PMGI+++L+EEC FPKA D+SF +KL Q+H ++ F K
Sbjct: 508 EFIDFGMDLQMCIDLIEKPMGILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGK 567
Query: 63 -----RGVADFAIVHYAGK------G--------MFRTVSQLYKEQLTKLMVTLRNTNPN 103
+G A F + HYAG G + V L L+ L
Sbjct: 568 PTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEE 627
Query: 104 FVRCIIPNHEKRAGIPRV-------LGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLV 156
K + + L +LM L +T+P+FVRCIIPN K+ G +DA LV
Sbjct: 628 PAGGGKKKKGKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELV 687
Query: 157 LDQLRCNGVLEGIRICRQGFPNRIPFQMSVPQPFLFR 193
L QL+CNGVLEGIRICR+GFP+R+ + F R
Sbjct: 688 LHQLQCNGVLEGIRICRKGFPSRLIY-----SEFKQR 719
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 191 bits (488), Expect = 3e-56
Identities = 62/222 (27%), Positives = 92/222 (41%), Gaps = 49/222 (22%)
Query: 10 KYILFFFN-----LLFSPMGIMALLDEECWFPKATDRSFVEKLVQSH-SQHAKFKKTDFR 63
I F+ N L+ + MG++ LLDEEC PK +D ++ +KL +H ++ A F+K
Sbjct: 485 TLIDFYDNQPCINLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRL- 543
Query: 64 GVADFAIVHYAGK------GM---------------------FRTVSQLYKEQLTKLMVT 96
F I H+A K G F+ + +L++++ + T
Sbjct: 544 SNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPT 603
Query: 97 LRNTNPNFVRCIIPNHEKRAGIPRV---------------LGRLMVTLRNTNPNFVRCII 141
+ P +A + L LM TL T P++VRCI
Sbjct: 604 SATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIK 663
Query: 142 PNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQ 183
PN K D + QLR GVLE IRI GFP+R +Q
Sbjct: 664 PNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQ 705
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 151 bits (382), Expect = 1e-41
Identities = 73/142 (51%), Positives = 79/142 (55%), Gaps = 32/142 (22%)
Query: 42 SFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKGMFRTVSQLYKEQLTKLMVTLRNTN 101
FV L + + + + KGMFRTV QLYKEQLTKLM TLRNTN
Sbjct: 618 KFVADLWKDVDRIVGLDQMAKMTESSLPSASKTKKGMFRTVGQLYKEQLTKLMTTLRNTN 677
Query: 102 PNFVRCIIPNHEKRAGIPRVLGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLR 161
PNFVR CIIPNHEKRAGK+DA LVL+QLR
Sbjct: 678 PNFVR--------------------------------CIIPNHEKRAGKLDAHLVLEQLR 705
Query: 162 CNGVLEGIRICRQGFPNRIPFQ 183
CNGVLEGIRICRQGFPNRI FQ
Sbjct: 706 CNGVLEGIRICRQGFPNRIVFQ 727
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 7e-07
Identities = 41/251 (16%), Positives = 71/251 (28%), Gaps = 101/251 (40%)
Query: 39 TDRSFVEKLVQ---------SHSQHAKFKKTDFRGVADFAIVHYA---GKG----MFRTV 82
+ SF + + A + T +I+ + +G M ++
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEA-YPNTSLP----PSILEDSLENNEGVPSPML-SI 341
Query: 83 SQLYKEQLTKLM--------------VTLRNTNPNFVRCIIPNHEKRAGIPRVLGRLMVT 128
S L +EQ+ + ++L N N V + +G P+ L L +T
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV---V------SGPPQSLYGLNLT 392
Query: 129 LRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIP-FQM--- 184
LR K AP LDQ R F R F
Sbjct: 393 LR-------------------KAKAPSGLDQ------------SRIPFSERKLKFSNRFL 421
Query: 185 --SVP--QPFLFRSNSVRSEFDSGVVEVFSALCLEFGVHS-------ASSSG-------- 225
+ P L ++ + ++ F+A ++ V+ SG
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD 481
Query: 226 --VCSPAVWPA 234
+ P W
Sbjct: 482 CIIRLPVKWET 492
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.051
Identities = 36/271 (13%), Positives = 71/271 (26%), Gaps = 82/271 (30%)
Query: 25 IMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKK---------TDFRGV------ADFA 69
+M+ + E P R ++E+ + ++ + F K R A
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 70 IVHYAGKGMF---RTV---SQLYKEQLTKLM------VTLRNTNP---------NFVRCI 108
++ G+ +T ++ M + L+N N + I
Sbjct: 154 LID----GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 109 IPNHEKRA----GIPRVLGRLMVTLRN--TNPNFVRCIIPNHEKRAGKIDAPLVLDQLRC 162
PN R+ I + + LR + + C+ LVL ++
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--------------LVLLNVQN 255
Query: 163 NGVLEGIRI-CRQGFPNRIPFQMSVPQPFLF--RSNSVRSEFDSGVVEVFSALCLEFGVH 219
+ C+ L R V + S +
Sbjct: 256 AKAWNAFNLSCK----------------ILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 220 SASSSGVCSPAVWPAPFGKSTRPCEVYESHP 250
+ + P P EV ++P
Sbjct: 300 PDEVKSLLLKYLDCRP---QDLPREVLTTNP 327
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei}
PDB: 3f5m_A*
Length = 487
Score = 28.5 bits (64), Expect = 2.8
Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 21/80 (26%)
Query: 75 GKGMFRTVSQLYKEQLTKLMVTLRNTNPNF-VRCIIPNHEKRAGIP----RVLG-RL--- 125
G + + E++ + ++ P+ V+ I P++ RA P + L
Sbjct: 342 GNKKLIDIGVILTEKVKAFLKANKSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATL 401
Query: 126 ------------MVTLRNTN 133
++ +R+ N
Sbjct: 402 AVHEAMAGATGCIIAMRHNN 421
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative
alcohol dehedrogenase, structural GENO joint center for
structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A
{Ralstonia eutropha}
Length = 358
Score = 28.0 bits (63), Expect = 3.1
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 184 MSVPQPFLFRSNSVRSEFDSGVVEVFSALCLEFGVHSA 221
M QPF++ +++ R F +G +A G A
Sbjct: 2 MKSSQPFIYEAHAARVVFGAGSSSQVAAEVERLGAKRA 39
>2x3j_A ACSD; alcaligin biosynthesis, ligase, ALCC, adenylation, sideropho
iron acquisition; HET: ATP X3J; 2.00A {Erwinia
chrysanthemi} PDB: 2w03_A* 2w04_A* 2w02_A* 2x3k_A*
3ffe_A
Length = 620
Score = 28.1 bits (62), Expect = 3.2
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 79 FRTVSQLYKEQLTKLMVTLRNTNPNFVRCIIPNHEKRAG--IPRVLGRLMVTLRNTNPNF 136
RT + K + +R T N VR +E + I R+ +L+ +T
Sbjct: 280 IRTWFIDDHDYFIKGSLNVRIT--NCVR-KNAWYELESTVLIDRLFRQLLDQHADTLGGL 336
Query: 137 V 137
V
Sbjct: 337 V 337
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral
virus, virus-immune SYST complex; 30.00A {Mus musculus}
SCOP: i.6.1.1
Length = 438
Score = 27.6 bits (62), Expect = 4.9
Identities = 8/64 (12%), Positives = 21/64 (32%), Gaps = 5/64 (7%)
Query: 203 SGVVEVFSALCLEFGVHSASSSGVCSPAVWPAPFGKSTRPCEVYESHPGPRHTSTMAVVE 262
+GV+ ++ + +S SS+ + + ++ CE +H +
Sbjct: 161 NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYE---RHNSYTCEA--THKTSTSPIVKSFNR 215
Query: 263 VRSS 266
Sbjct: 216 NECE 219
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.138 0.431
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,000,783
Number of extensions: 229560
Number of successful extensions: 544
Number of sequences better than 10.0: 1
Number of HSP's gapped: 512
Number of HSP's successfully gapped: 18
Length of query: 266
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 174
Effective length of database: 4,133,061
Effective search space: 719152614
Effective search space used: 719152614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.3 bits)