RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3667
(266 letters)
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 160 bits (405), Expect = 1e-45
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 18/180 (10%)
Query: 22 PMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDF-----RGVADFAIVHYAGK 76
P+G+++LLDE C K+TD++F++ + + ++ + G F + HYAG
Sbjct: 444 PIGLISLLDEACLIAKSTDQTFLDSICKQFEKNPHLQSYVVSKDRSIGDTCFRLKHYAGD 503
Query: 77 GMFRTVSQLYK---EQLTKLMVTLRNTNPNFVRCIIPNHEKRAGIPRV----------LG 123
+ L K L+ ++++++ V+ + P R +
Sbjct: 504 VTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQGLFPPTRPEDSKKRPETAGSQFRNAMN 563
Query: 124 RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQ 183
L+ TL +P++VRCI N K+AG ID V Q+R G+LE +R+ R GF RI +
Sbjct: 564 ALITTLLACSPHYVRCIKSNDNKQAGVIDEDRVRHQVRYLGLLENVRVRRAGFAGRIEYT 623
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 157 bits (398), Expect = 1e-44
Identities = 96/198 (48%), Positives = 120/198 (60%), Gaps = 33/198 (16%)
Query: 19 LFSPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDF-RGVADFAIVHYAGKG 77
+P G++ALLDEECWFPKATD SFVEKL+Q HAKF+K+ + +F I+HYAGK
Sbjct: 452 PTNPPGVLALLDEECWFPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKV 511
Query: 78 MFRTVSQLYK---EQLTKLMVTLRNTNPNFVRCIIPNHEKRAGIPRV------------- 121
+ + L K + L ++ FV + + ++ G+ ++
Sbjct: 512 TYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVDRIVGLDQMAKMTESSLPSASK 571
Query: 122 ----------------LGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGV 165
L +LM TLRNTNPNFVRCIIPNHEKRAGK+DA LVL+QLRCNGV
Sbjct: 572 TKKGMFRTVGQLYKEQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGV 631
Query: 166 LEGIRICRQGFPNRIPFQ 183
LEGIRICRQGFPNRI FQ
Sbjct: 632 LEGIRICRQGFPNRIVFQ 649
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 151 bits (381), Expect = 3e-42
Identities = 70/180 (38%), Positives = 98/180 (54%), Gaps = 16/180 (8%)
Query: 20 FSPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGKGMF 79
P GI+ALLDE+ FP ATD + + KL S+ + +F + HYAG+ M+
Sbjct: 473 RQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMY 532
Query: 80 RTVSQLYK--EQLTKLMV-TLRNTNPNFVRCIIPNHE------KRAGIPRV-------LG 123
L K + L + + ++++ N V + + K A V L
Sbjct: 533 EIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFITVAAQYKEQLA 592
Query: 124 RLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFPNRIPFQ 183
LM TL TNP+FVRCIIPN+++ K++ +VLDQLRCNGVLEGIRI R+GFPNRI +
Sbjct: 593 SLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYA 652
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 142 bits (358), Expect = 5e-39
Identities = 61/242 (25%), Positives = 92/242 (38%), Gaps = 43/242 (17%)
Query: 17 NLLFSPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAIVHYAGK 76
NL+ + MG++ LLDEEC PK +D ++ +KL +H + F I H+A K
Sbjct: 435 NLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADK 494
Query: 77 GMFRTVSQLYK--EQLTKLMVTL--RNTNPNFVRCIIPNHEKRAG--------------- 117
++ L K + + + + + + + + + EK
Sbjct: 495 VEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRT 554
Query: 118 -----------------------IPRVLGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAP 154
L LM TL T P++VRCI PN K D
Sbjct: 555 PVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEK 614
Query: 155 LVLDQLRCNGVLEGIRICRQGFPNRIPFQMSVPQ-PFLFRSNSVRSEFDSGVVEVFSALC 213
+ QLR GVLE IRI GFP+R +Q + L + V S+ V L
Sbjct: 615 RAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDRKQTCKNVLEKLI 674
Query: 214 LE 215
L+
Sbjct: 675 LD 676
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 139 bits (350), Expect = 5e-38
Identities = 75/206 (36%), Positives = 107/206 (51%), Gaps = 33/206 (16%)
Query: 11 YILFFFN------LLFSPMGIMALLDEECWFPKATDRSFVEKLVQSHSQHAKF------K 58
+I F + L+ PMGI+++L+EEC FPKA D+SF +KL Q+H +
Sbjct: 461 FIDFGMDLQMCIDLIEKPMGILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKP 520
Query: 59 KTDFRGVADFAIVHYAGKGMFRTVSQLYKEQLT---KLMVTLRNTNPNFVRCIIPNHEKR 115
+G A F + HYAG + L K + ++ L + V + E+
Sbjct: 521 TRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEEP 580
Query: 116 AGIPRV------------------LGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLVL 157
AG + L +LM L +T+P+FVRCIIPN K+ G +DA LVL
Sbjct: 581 AGGGKKKKGKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVL 640
Query: 158 DQLRCNGVLEGIRICRQGFPNRIPFQ 183
QL+CNGVLEGIRICR+GFP+R+ +
Sbjct: 641 HQLQCNGVLEGIRICRKGFPSRLIYS 666
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 133 bits (335), Expect = 7e-36
Identities = 77/207 (37%), Positives = 103/207 (49%), Gaps = 34/207 (16%)
Query: 11 YILFFFN------LLFSPMGIMALLDEECWFPKATDRSFVEKLVQSH-SQHAKFKKTDF- 62
+I F + L+ PMGI ++L+EEC FPKATD SF KL H + F+K
Sbjct: 463 FIDFGMDLAACIELIEKPMGIFSILEEECMFPKATDTSFKNKLYDEHLGKSNNFQKPKPA 522
Query: 63 --RGVADFAIVHYAGK--------------GMFRTVSQLYKEQLTKLMVTLRNTNPNFVR 106
+ A F++VHYAG + TV LY++ K + L T
Sbjct: 523 KGKAEAHFSLVHYAGTVDYNISGWLEKNKDPLNETVIGLYQKSSVKTLALLFATYGGEAE 582
Query: 107 CIIPNHEKRAGIPRV----------LGRLMVTLRNTNPNFVRCIIPNHEKRAGKIDAPLV 156
+ L +LM LR+T+P+FVRCIIPN K G ++ LV
Sbjct: 583 GGGGKKGGKKKGSSFQTVSALFRENLNKLMANLRSTHPHFVRCIIPNETKTPGAMEHELV 642
Query: 157 LDQLRCNGVLEGIRICRQGFPNRIPFQ 183
L QLRCNGVLEGIRICR+GFP+R+ +
Sbjct: 643 LHQLRCNGVLEGIRICRKGFPSRVLYA 669
>d2f4mb1 a.189.1.1 (B:275-332) XPC-binding domain of Rad23 homolog B
(Hhr23b) {Human (Homo sapiens) [TaxId: 9606]}
Length = 58
Score = 23.8 bits (52), Expect = 6.4
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Query: 97 LRNTNPNF--VRCIIPNHEKRAGIPRVLGRLMVTLRNTNPNFVRCIIPNHE 145
LRN P F +R II + P +L L+ + NP ++ I + E
Sbjct: 5 LRN-QPQFQQMRQIIQQN------PSLLPALLQQIGRENPQLLQQISQHQE 48
>d1luia_ d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 108
Score = 24.7 bits (53), Expect = 6.7
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 29 LDEECWFPKATDRSFVEKLVQSHSQHAKFKKTDFRGVADFAI-VHYAGKGMFRTVSQLYK 87
L+ W+ K+ R EKL+ + F D R + + V + Y
Sbjct: 3 LETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTPGTYTVSVFTKAIISENPCIKHYH 62
Query: 88 EQLT 91
+ T
Sbjct: 63 IKET 66
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.138 0.431
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 979,980
Number of extensions: 44012
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 10
Length of query: 266
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 182
Effective length of database: 1,254,276
Effective search space: 228278232
Effective search space used: 228278232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.3 bits)