BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy367
(919 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 123 bits (308), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 92/172 (53%), Gaps = 3/172 (1%)
Query: 18 ASWQNTTEMYISLLDLTSVPYVLPHSRQHLSKYS-LKNHVRIHTKEKLFICEECGKQFVT 76
+ + +++ + + L+ PY P + S+ L H R HT EK + C ECGK F
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
Query: 77 SSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSS 136
L RH++ H K + C CGK FS NL H+R HTGEKP+ C CGKSFSQ +
Sbjct: 62 KKDLTRHQR-THTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAH 120
Query: 137 LFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASF 188
L H+ HT + Y+C C K F R L +H +TH+ +PY+C C SF
Sbjct: 121 LRAHQRTHTGEK-PYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSF 171
Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 92/170 (54%), Gaps = 3/170 (1%)
Query: 62 EKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
EK + C ECGK F S L H++ H K + C CGK FS +LT H+R HTGEKP
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 122 FVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSDLRPYEC 181
+ C CGKSFSQ ++L H+ HT + Y C C K F + + L +H +TH+ +PY+C
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEK-PYACPECGKSFSQLAHLRAHQRTHTGEKPYKC 136
Query: 182 DICNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQHGKTHN 231
C SF H+ H+ +PY+C C SF R L H +TH
Sbjct: 137 PECGKSFSREDNLHTHQR-THTGEKPYKCPECGKSFSRRDALNVHQRTHT 185
Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 90/172 (52%), Gaps = 5/172 (2%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCC 326
Y CP C R D L H + HTGEK C +CGK RH + H K C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR-THTGEKPYKC 80
Query: 327 DMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCS 386
CGK+FS + NL AH++TH+G+KPY C CGKSF+Q A L+ H T ++ ++C
Sbjct: 81 PECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT---HTGEKPYKCP 137
Query: 387 QCPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDER 438
+C K F R L+ H + HT E+ C C SF + + H+R HT ++
Sbjct: 138 ECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR-THTGKK 188
Score = 109 bits (273), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 92/174 (52%), Gaps = 5/174 (2%)
Query: 288 LHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAAHKKTHS 347
L GEK C +CGK H + H K C CGK+FS + +L H++TH+
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRHQRTHT 73
Query: 348 GDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHLKIHTE 407
G+KPY C CGKSF+Q A+L+ H T ++ + C +C K F + + L AH + HT
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAHQRT---HTGEKPYACPECGKSFSQLAHLRAHQRTHTG 130
Query: 408 ERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
E+ C C SF ++ + H+R HT E+P+ C C +F + D L H +T
Sbjct: 131 EKPYKCPECGKSFSREDNLHTHQR-THTGEKPYKCPECGKSFSRRDALNVHQRT 183
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 37 PYVLPHSRQHLS-KYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHS 95
PY P + S K L H R HT EK + C ECGK F + LR H++ H K ++
Sbjct: 49 PYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQR-THTGEKPYA 107
Query: 96 CDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
C CGK FS +L H+R HTGEKP+ C CGKSFS+ +L H+ HT + Y+C
Sbjct: 108 CPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEK-PYKCPE 166
Query: 156 CQKKFFRNSKLTSHLKTHS 174
C K F R L H +TH+
Sbjct: 167 CGKSFSRRDALNVHQRTHT 185
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 90/178 (50%), Gaps = 9/178 (5%)
Query: 118 GEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSDLR 177
GEKP+ C CGKSFS+ L H+ HT + Y+C C K F LT H +TH+ +
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEK-PYKCPECGKSFSDKKDLTRHQRTHTGEK 76
Query: 178 PYECDICNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQHGKTHNTENKGL 237
PY+C C SF + H+ H+ +PY C C SF + HL+ H +TH E
Sbjct: 77 PYKCPECGKSFSQRANLRAHQR-THTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYK 135
Query: 238 LEE--HVFSCKAKRKENLDSYQITWGVDMVRYQCPMCQIVLKRKDTLRHHLKLHTGEK 293
E FS R++NL ++Q T + Y+CP C R+D L H + HTG+K
Sbjct: 136 CPECGKSFS----REDNLHTHQRTHTGEKP-YKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 66/113 (58%), Gaps = 2/113 (1%)
Query: 37 PYVLPHSRQHLS-KYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHS 95
PY P + S + +L+ H R HT EK + C ECGK F + LR H++ H K +
Sbjct: 77 PYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR-THTGEKPYK 135
Query: 96 CDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQ 148
C CGK FS NL H+R HTGEKP+ C CGKSFS+ +L +H+ HT ++
Sbjct: 136 CPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 97/251 (38%), Gaps = 81/251 (32%)
Query: 629 IHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPF 688
+ + A+ E Y C CGK F ++ EH +R H EKP+
Sbjct: 10 VAQAALEPGEKPYACPECGKSFSRSDHLAEH-QRTHTG------------------EKPY 50
Query: 689 KCNLCGTGFESDRQVSGHRVNCAFFVLKPEEAKLTGELTATTPDKESFVIMPXXXXXXXX 748
KC CG F + ++ H+
Sbjct: 51 KCPECGKSFSDKKDLTRHQ----------------------------------------- 69
Query: 749 XXIGTVRQSKLGKINGDEPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGK-- 806
+ + E P+ CP+CGK ++++++L H T G++ P C CGK
Sbjct: 70 ------------RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEK--PYACPECGKSF 115
Query: 807 -HVINIRNHMRQVHLYPEVRPHMCDLCGARFKKSSALLQHRPIHTGER-HICPVCGRGFT 864
+ ++R H R + +P+ C CG F + L H+ HTGE+ + CP CG+ F+
Sbjct: 116 SQLAHLRAHQR---THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFS 172
Query: 865 QRGAMKKHVST 875
+R A+ H T
Sbjct: 173 RRDALNVHQRT 183
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 751 IGTVRQSKLGKINGDEPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVIN 810
G+ + E P+ACP+CGK +++ L H T G++ P C CGK +
Sbjct: 4 FGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEK--PYKCPECGKSFSD 61
Query: 811 IRNHMRQVHLYPEVRPHMCDLCGARFKKSSALLQHRPIHTGER-HICPVCGRGFTQRGAM 869
++ R + +P+ C CG F + + L H+ HTGE+ + CP CG+ F+Q +
Sbjct: 62 KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHL 121
Query: 870 KKHVST 875
+ H T
Sbjct: 122 RAHQRT 127
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 87/241 (36%), Gaps = 75/241 (31%)
Query: 613 ACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRK 672
AC +CG+ F + L H+R H+ E Y+C CGK F KK + H +R H
Sbjct: 23 ACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRH-QRTHTG------ 74
Query: 673 QREPRPPAKPDSEKPFKCNLCGTGFESDRQVSGHRVNCAFFVLKPEEAKLTGELTATTPD 732
EKP+KC CG F + H+
Sbjct: 75 ------------EKPYKCPECGKSFSQRANLRAHQ------------------------- 97
Query: 733 KESFVIMPXXXXXXXXXXIGTVRQSKLGKINGDEPPFACPQCGKLYNKKSSLYMHLSTKH 792
+ + E P+ACP+CGK +++ + L H T
Sbjct: 98 ----------------------------RTHTGEKPYACPECGKSFSQLAHLRAHQRTHT 129
Query: 793 GKRSEPTVCEACGKHVINIRNHMRQVHLYPEVRPHMCDLCGARFKKSSALLQHRPIHTGE 852
G++ P C CGK N + +P+ C CG F + AL H+ HTG+
Sbjct: 130 GEK--PYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGK 187
Query: 853 R 853
+
Sbjct: 188 K 188
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 100/269 (37%), Gaps = 85/269 (31%)
Query: 529 SASIEVITPNADPSQNLF-CIKCNASFTSSPAMQSHLKKVHNFSNPNRFDCCFCSEIFNL 587
+S V +P + + C +C SF+ S + H ++ H P + C C + F+
Sbjct: 5 GSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH-QRTHTGEKP--YKCPECGKSFSD 61
Query: 588 KKDYHEHLKKEHGQTTSGTRRFQLCACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCG 647
KKD H + T +G + ++ C +CG+ F L H+R H+ E Y C CG
Sbjct: 62 KKDLTRHQR-----THTGEKPYK---CPECGKSFSQRANLRAHQR-THTGEKPYACPECG 112
Query: 648 KVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFKCNLCGTGFESDRQVSGHR 707
K F ++R H +R H EKP+KC CG F + + H+
Sbjct: 113 KSFSQLAHLRAH-QRTHTG------------------EKPYKCPECGKSFSREDNLHTHQ 153
Query: 708 VNCAFFVLKPEEAKLTGELTATTPDKESFVIMPXXXXXXXXXXIGTVRQSKLGKINGDEP 767
+ + E
Sbjct: 154 -----------------------------------------------------RTHTGEK 160
Query: 768 PFACPQCGKLYNKKSSLYMHLSTKHGKRS 796
P+ CP+CGK ++++ +L +H T GK++
Sbjct: 161 PYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 79/199 (39%), Gaps = 38/199 (19%)
Query: 437 ERPHACQYCSATFKKSDHLKRHSKTAHKEMYQSEDIDQQTILLDPRTYVHPY-VPYQGDP 495
E+P+AC C +F +SDHL H +T T PY P G
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRT--------------------HTGEKPYKCPECGKS 58
Query: 496 HDLKK--ISISRVHTRKKELLVSSTCAQQDPEPLQSASIEVITPNADPSQNLFCIKCNAS 553
KK R HT +K C + Q A++ + C +C S
Sbjct: 59 FSDKKDLTRHQRTHTGEKPY----KCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKS 114
Query: 554 FTSSPAMQSHLKKVHNFSNPNRFDCCFCSEIFNLKKDYHEHLKKEHGQTTSGTRRFQLCA 613
F+ +++H ++ H P + C C + F+ + + H H + T +G + ++
Sbjct: 115 FSQLAHLRAH-QRTHTGEKP--YKCPECGKSFSREDNLHTHQR-----THTGEKPYK--- 163
Query: 614 CTDCGRMFYNNGALGIHRR 632
C +CG+ F AL +H+R
Sbjct: 164 CPECGKSFSRRDALNVHQR 182
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 62 EKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
EK + C ECGK F SS L++H++ H K + C CGK FS ++L H+R HTGEKP
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 122 FVCESCGKSFSQHSSLFIHKMIHTQRQ 148
+ C CGKSFS+ L H+ H ++
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRY 151
K + C CGK FS +NL H+R HTGEKP+ C CGKSFSQ S L H+ HT + Y
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEK-PY 61
Query: 152 ECSHCQKKFFRNSKLTSHLKTHSDLR 177
+C C K F R+ L+ H +TH + +
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQC 385
C CGK+FS +NL H++TH+G+KPY C CGKSF+Q++ L+ H T ++ ++C
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRT---HTGEKPYKC 63
Query: 386 SQCPKKFYRNSKLNAHLKIHTEER 409
+C K F R+ L+ H + H ++
Sbjct: 64 PECGKSFSRSDHLSRHQRTHQNKK 87
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 380 KRLFQCSQCPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERP 439
++ ++C +C K F ++S L H + HT E+ C C SF ++++KH+R HT E+P
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR-THTGEKP 60
Query: 440 HACQYCSATFKKSDHLKRHSKT 461
+ C C +F +SDHL RH +T
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRT 82
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 151 YECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSETRPYQC 210
Y+C C K F ++S L H +TH+ +PY+C C SF + + +KH+ H+ +PY+C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR-THTGEKPYKC 63
Query: 211 NLCNASFKRPGHLKQHGKTHNTE 233
C SF R HL +H +TH +
Sbjct: 64 PECGKSFSRSDHLSRHQRTHQNK 86
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 292 EKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAAHKKTHSGDKP 351
EK C +CGK ++H + H K C CGK+FS ++L H++TH+G+KP
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 352 YVCETCGKSFAQNASLKYHHDT 373
Y C CGKSF+++ L H T
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRT 82
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 37 PYVLPHSRQHLSKYS-LKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHS 95
PY P + S+ S L+ H R HT EK + C ECGK F SS L++H++ H K +
Sbjct: 4 PYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR-THTGEKPYK 62
Query: 96 CDVCGKVFSCPTNLTVHKRVHTGEK 120
C CGK FS +L+ H+R H +K
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 31/111 (27%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPEVR 825
E P+ CP+CGK +++ S+L H T G+ +
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGE------------------------------K 31
Query: 826 PHMCDLCGARFKKSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKHVST 875
P+ C CG F +SS L +H+ HTGE+ + CP CG+ F++ + +H T
Sbjct: 32 PYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRT 82
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 20/94 (21%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQ 673
C +CG+ F + L H+R H+ E Y+C CGK F +++H +R H
Sbjct: 7 CPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKH-QRTHTG------- 57
Query: 674 REPRPPAKPDSEKPFKCNLCGTGFESDRQVSGHR 707
EKP+KC CG F +S H+
Sbjct: 58 -----------EKPYKCPECGKSFSRSDHLSRHQ 80
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 31/111 (27%)
Query: 206 RPYQCNLCNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITWGVDMV 265
+PY+C C SF + +L++H +TH E
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKP------------------------------ 32
Query: 266 RYQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKS 316
Y+CP C + L+ H + HTGEK C +CGK RH ++
Sbjct: 33 -YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRT 82
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 32/117 (27%)
Query: 177 RPYECDICNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQHGKTHNTENKG 236
+PY+C C SF + +KH+ H+ +PY+C C SF + L++H +TH E
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP- 60
Query: 237 LLEEHVFSCKAKRKENLDSYQITWGVDMVRYQCPMCQIVLKRKDTLRHHLKLHTGEK 293
Y+CP C R D L H + H +K
Sbjct: 61 ------------------------------YKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 547 CIKCNASFTSSPAMQSHLKKVHNFSNPNRFDCCFCSEIFNLKKDYHEHLKKEHGQTTSGT 606
C +C SF+ S +Q H ++ H P + C C + F+ D +H + T +G
Sbjct: 7 CPECGKSFSQSSNLQKH-QRTHTGEKP--YKCPECGKSFSQSSDLQKHQR-----THTGE 58
Query: 607 RRFQLCACTDCGRMFYNNGALGIHRRA 633
+ ++ C +CG+ F + L H+R
Sbjct: 59 KPYK---CPECGKSFSRSDHLSRHQRT 82
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 60/100 (60%), Gaps = 6/100 (6%)
Query: 51 SLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSC--DVCGKVFSCPTN 108
+++ H+ H ++ +C ECGK FV SS L+RH+ VH K C + CGK FS N
Sbjct: 22 AMRKHLHTHG-PRVHVCAECGKAFVESSKLKRHQ-LVHTGEKPFQCTFEGCGKRFSLDFN 79
Query: 109 LTVHKRVHTGEKPFVC--ESCGKSFSQHSSLFIHKMIHTQ 146
L H R+HTG++P+VC + C K F+Q ++L H + H +
Sbjct: 80 LRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 119
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 70 CGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVC--ESC 127
C K F +SA+R+H ++ H C CGK F + L H+ VHTGEKPF C E C
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRV--HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGC 70
Query: 128 GKSFSQHSSLFIHKMIHT-QRQYRYECSHCQKKFFRNSKLTSHLKTHSDLR 177
GK FS +L H IHT R Y C KKF +++ L SH+ TH+ +
Sbjct: 71 GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 272 CQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCC--DMC 329
C + + +R HL H G + C +CGK KRH + VH K C + C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRH-QLVHTGEKPFQCTFEGC 70
Query: 330 GKAFSCQTNLAAHKKTHSGDKPYVC--ETCGKSFAQNASLKYH 370
GK FS NL H + H+GD+PYVC + C K FAQ+ +LK H
Sbjct: 71 GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 125 ESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSDLRPYECDI- 183
+ C K F +S++ H +HT + C+ C K F +SKL H H+ +P++C
Sbjct: 11 KGCTKMFRDNSAMRKH--LHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFE 68
Query: 184 -CNASFKTNYERKKHRIYVHSETRPYQCNL--CNASFKRPGHLKQHGKTH 230
C F ++ + H + +H+ RPY C CN F + +LK H TH
Sbjct: 69 GCGKRFSLDFNLRTH-VRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 9/109 (8%)
Query: 357 CGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHLKIHTEERA--CFCD 414
C K F N++++ H T H R+ C++C K F +SKL H +HT E+ C +
Sbjct: 13 CTKMFRDNSAMRKHLHT-HG---PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFE 68
Query: 415 ICNHSFKTDNEVKKHKRFVHTDERPHACQY--CSATFKKSDHLKRHSKT 461
C F D ++ H R +HT +RP+ C + C+ F +S +LK H T
Sbjct: 69 GCGKRFSLDFNLRTHVR-IHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 116
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 53/114 (46%), Gaps = 10/114 (8%)
Query: 769 FACPQ--CGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPEVRP 826
ACP C K++ S++ HL T HG R VC CGK + R ++ +P
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHT-HGPRVH--VCAECGKAFVESSKLKRHQLVHTGEKP 62
Query: 827 HMCDL--CGARFKKSSALLQHRPIHTGER-HICPV--CGRGFTQRGAMKKHVST 875
C CG RF L H IHTG+R ++CP C + F Q +K H+ T
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 116
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 52 LKNHVRIHTKEKLFIC--EECGKQFVTSSALRRHKKAVHLKIKDHSC--DVCGKVFSCPT 107
LK H +HT EK F C E CGK+F LR H + +H + + C D C K F+ T
Sbjct: 50 LKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR-IHTGDRPYVCPFDGCNKKFAQST 108
Query: 108 NLTVHKRVHTGEK 120
NL H H K
Sbjct: 109 NLKSHILTHAKAK 121
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 770 ACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHV---INIRNHMRQVHLYPEVRP 826
C +CGK + + S L H G++ E CGK N+R H+R ++ RP
Sbjct: 36 VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR---IHTGDRP 92
Query: 827 HMC--DLCGARFKKSSALLQHRPIHT 850
++C D C +F +S+ L H H
Sbjct: 93 YVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 50 YSLKNHVRIHTKEKLFIC--EECGKQFVTSSALRRH 83
++L+ HVRIHT ++ ++C + C K+F S+ L+ H
Sbjct: 78 FNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 119 EKPFVC--ESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSDL 176
E+P+ C ESC + FSQ SL H IHT Q ++C C + F R+ LT+H++TH+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTG-QKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 177 RPYECDICNASFKTNYERKKH 197
+P+ CDIC F + ERK+H
Sbjct: 61 KPFACDICGRKFARSDERKRH 81
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 62 EKLFIC--EECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGE 119
E+ + C E C ++F S +L RH + +H K C +C + FS +LT H R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 120 KPFVCESCGKSFSQHSSLFIHKMIHTQRQ 148
KPF C+ CG+ F++ H IH +++
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 349 DKPYVC--ETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHLKIHT 406
++PY C E+C + F+Q+ SL H + ++ FQC C + F R+ L H++ HT
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRH---IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Query: 407 EERACFCDICNHSFKTDNEVKKHKRF 432
E+ CDIC F +E K+H +
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKI 84
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 388 CPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSA 447
C ++F ++ L H++IHT ++ C IC +F + + H R HT E+P AC C
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGR 70
Query: 448 TFKKSDHLKRHSK 460
F +SD KRH+K
Sbjct: 71 KFARSDERKRHTK 83
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 298 EQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAAHKKTHSGDKPYVCETC 357
E C ++ + RH++ +H K C +C + FS +L H +TH+G+KP+ C+ C
Sbjct: 10 ESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 358 GKSFAQNASLKYH 370
G+ FA++ K H
Sbjct: 69 GRKFARSDERKRH 81
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 146 QRQYRYECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSET 205
+R Y C ++F ++ LT H++ H+ +P++C IC +F + H I H+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGE 60
Query: 206 RPYQCNLCNASFKRPGHLKQHGKTH 230
+P+ C++C F R K+H K H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 327 DMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCS 386
+ C + FS +L H + H+G KP+ C C ++F+++ L H + ++ F C
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH---IRTHTGEKPFACD 66
Query: 387 QCPKKFYRNSKLNAHLKIHTEER 409
C +KF R+ + H KIH ++
Sbjct: 67 ICGRKFARSDERKRHTKIHLRQK 89
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 37 PYVLPH---SRQHLSKYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKD 93
PY P R+ SL H+RIHT +K F C C + F S L H + H K
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKP 62
Query: 94 HSCDVCGKVFSCPTNLTVHKRVHTGEK 120
+CD+CG+ F+ H ++H +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 34/120 (28%)
Query: 206 RPYQCNL--CNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITWGVD 263
RPY C + C+ F + G L +H + H +
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKP---------------------------- 34
Query: 264 MVRYQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKD 323
+QC +C R D L H++ HTGEK C+ CG++ KRH K +HL+ KD
Sbjct: 35 ---FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQKD 90
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 16/92 (17%)
Query: 766 EPPFACP--QCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPE 823
E P+ACP C + +++ SL H+ G++ P C C +RN R HL
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQK--PFQCRIC------MRNFSRSDHLTTH 53
Query: 824 VR------PHMCDLCGARFKKSSALLQHRPIH 849
+R P CD+CG +F +S +H IH
Sbjct: 54 IRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 177 RPYECDI--CNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
RPY C + C+ F + +H I +H+ +P+QC +C +F R HL H +TH E
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 52 LKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKD 93
L H+R HT EK F C+ CG++F S +RH K +HL+ KD
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQKD 90
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 267 YQCPM--CQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDL 324
Y CP+ C + +L H+++HTG+K C C + H+++ H K
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 325 CCDMCGKAFSCQTNLAAHKKTH 346
CD+CG+ F+ H K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 798 PTVC--EACGKHVINIRNHMRQVHLYPEVRPHMCDLCGARFKKSSALLQHRPIHTGER-H 854
P C E+C + + R + ++ +P C +C F +S L H HTGE+
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 855 ICPVCGRGFTQRGAMKKHV 873
C +CGR F + K+H
Sbjct: 64 ACDICGRKFARSDERKRHT 82
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 20/86 (23%)
Query: 612 CACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVR 671
C C R F +G+L H R +H+ + +QC C + F ++ HI R H
Sbjct: 7 CPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTG----- 59
Query: 672 KQREPRPPAKPDSEKPFKCNLCGTGF 697
EKPF C++CG F
Sbjct: 60 -------------EKPFACDICGRKF 72
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 410 ACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
AC + C+ F + +H R +HT ++P C+ C F +SDHL H +T
Sbjct: 6 ACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 599 HGQTTSGTRRFQLCACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMRE 658
H + +G + FQ C C R F + L H R H+ E + CD CG+ F +
Sbjct: 25 HIRIHTGQKPFQ---CRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKR 80
Query: 659 HIKRIHINQ 667
H K IH+ Q
Sbjct: 81 HTK-IHLRQ 88
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 62 EKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
+K FIC+ CG+ F S L H++ H + ++CD+C K F +L H+ +H+ EKP
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 122 FVCESCGKSFSQHSSLFIHKMIHTQ 146
F C+ CGK F Q +L +HK +H Q
Sbjct: 74 FKCQECGKGFCQSRTLAVHKTLHMQ 98
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 322 KDLCCDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKR 381
K+ C CG+ F+ NL H++TH+ ++PY C+ C K+F + L+ H +H+ K++
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLR-DHRYIHS--KEK 72
Query: 382 LFQCSQCPKKFYRNSKLNAHLKIHTE 407
F+C +C K F ++ L H +H +
Sbjct: 73 PFKCQECGKGFCQSRTLAVHKTLHMQ 98
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 151 YECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSETRPYQC 210
+ C C + F ++ L H +TH+D RPY CDIC+ +F+ + HR Y+HS+ +P++C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR-YIHSKEKPFKC 76
Query: 211 NLCNASFKRPGHLKQHGKTH 230
C F + L H H
Sbjct: 77 QECGKGFCQSRTLAVHKTLH 96
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRY 151
K+ C CG+ F+ NL +H+R HT E+P+ C+ C K+F + L H+ IH++ + +
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK-PF 74
Query: 152 ECSHCQKKFFRNSKLTSHLKTH 173
+C C K F ++ L H H
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLH 96
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 380 KRLFQCSQCPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERP 439
K+ F C C + F ++ L H + HT+ER CDIC+ +F+ + ++ H R++H+ E+P
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEKP 73
Query: 440 HACQYCSATFKKSDHLKRHSKTAHKE 465
CQ C F +S L H KT H +
Sbjct: 74 FKCQECGKGFCQSRTLAVH-KTLHMQ 98
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 290 TGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAAHKKTHSGD 349
T ++F+ C+ CG+ Y H ++ H + CD+C KAF Q +L H+ HS +
Sbjct: 14 TKKEFI-CKFCGRHFTKSYNLLIHERT-HTDERPYTCDICHKAFRRQDHLRDHRYIHSKE 71
Query: 350 KPYVCETCGKSFAQNASLKYH 370
KP+ C+ CGK F Q+ +L H
Sbjct: 72 KPFKCQECGKGFCQSRTLAVH 92
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 20/95 (21%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQ 673
C CGR F + L IH R H+ E Y CD C K F + ++R+H + IH
Sbjct: 20 CKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDH-RYIH--------- 68
Query: 674 REPRPPAKPDSEKPFKCNLCGTGFESDRQVSGHRV 708
EKPFKC CG GF R ++ H+
Sbjct: 69 ---------SKEKPFKCQECGKGFCQSRTLAVHKT 94
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 800 VCEACGKHVINIRNHMRQVHLYPEVRPHMCDLCGARFKKSSALLQHRPIHTGERHI-CPV 858
+C+ CG+H N + + + RP+ CD+C F++ L HR IH+ E+ C
Sbjct: 19 ICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQE 78
Query: 859 CGRGFTQRGAMKKHVSTLH 877
CG+GF Q + H TLH
Sbjct: 79 CGKGFCQSRTLAVH-KTLH 96
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSDLRP 178
+K F+C+ CG+ F++ +L IH+ HT + Y C C K F R L H HS +P
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDER-PYTCDICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 179 YECDICNASF 188
++C C F
Sbjct: 74 FKCQECGKGF 83
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 45 QHLSK-YSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVF 103
+H +K Y+L H R HT E+ + C+ C K F LR H + +H K K C CGK F
Sbjct: 25 RHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEKPFKCQECGKGF 83
Query: 104 SCPTNLTVHKRVH 116
L VHK +H
Sbjct: 84 CQSRTLAVHKTLH 96
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 177 RPYECDICNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+ + C C F +Y H H++ RPY C++C+ +F+R HL+ H H+ E
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHE-RTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKE 71
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 262 VDMVRYQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGK 302
D Y C +C +R+D LR H +H+ EK C++CGK
Sbjct: 41 TDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGK 81
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 762 INGDEPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTV 800
I+ E PF C +CGK + + +L +H T H + S PT
Sbjct: 67 IHSKEKPFKCQECGKGFCQSRTLAVH-KTLHMQTSSPTA 104
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Query: 96 CDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIH--TQRQYRYEC 153
C C K F L VH R HTGEKPF C CGK + + +L H+ + + + + C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 154 SHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHS 203
S CQ+ F R +L H+ +H+ PY+C C+ F + + H I +HS
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 44 RQHLSKYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRH--KKAVHLKIKDHSCDVCGK 101
++ LSKY LK H R HT EK F C +CGK + L H + ++ + +C VC +
Sbjct: 15 KKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQE 74
Query: 102 VFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIH 140
F L +H HTGE P+ C SC + F Q L H
Sbjct: 75 TFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQC 385
C C K F + L H + H+G+KP+ C CGK + + +L H +++F C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 386 SQCPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTD 436
S C + F R +L H+ HT E C C+ F +++ H +H+
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 10/115 (8%)
Query: 268 QCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHL------KSVHLKI 321
+CP C K L+ H + HTGEK C +CGK Y K +L ++
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGK----CYFRKENLLEHEARNCMNRSE 64
Query: 322 KDLCCDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHA 376
+ C +C + F + L H +H+G+ PY C +C + F Q L+ H +H+
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 34/143 (23%)
Query: 152 ECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASF--KTNYERKKHRIYVHSETRPYQ 209
EC C KKF L H + H+ +P+EC C + K N + R ++ + +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 210 CNLCNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITWGVDMVRYQC 269
C++C +F+R L+ H +H E + Y+C
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGE-------------------------------MPYKC 97
Query: 270 PMC-QIVLKRKDTLRHHLKLHTG 291
C Q +++KD H +KLH+G
Sbjct: 98 SSCSQQFMQKKDLQSHMIKLHSG 120
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 28/114 (24%)
Query: 765 DEPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPEV 824
E PF CP+CGK Y +K +L H + RSE
Sbjct: 32 GEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF------------------------ 67
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKHVSTLH 877
C +C F++ L H HTGE + C C + F Q+ ++ H+ LH
Sbjct: 68 ---TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 55/139 (39%), Gaps = 29/139 (20%)
Query: 180 ECDICNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQHGKTHNTENKGLLE 239
EC C+ F + Y K H H+ +P++C C + R +L +H + N N+
Sbjct: 9 ECPTCHKKFLSKYYLKVHN-RKHTGEKPFECPKCGKCYFRKENLLEH-EARNCMNRS--- 63
Query: 240 EHVFSCKAKRKENLDSYQITWGVDMVRYQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQ 299
E VF+C +CQ +R+ LR H+ HTGE C
Sbjct: 64 EQVFTCS------------------------VCQETFRRRMELRLHMVSHTGEMPYKCSS 99
Query: 300 CGKQLHGVYAFKRHLKSVH 318
C +Q + H+ +H
Sbjct: 100 CSQQFMQKKDLQSHMIKLH 118
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 9/127 (7%)
Query: 538 NADPSQNLFCIKCNASFTSSPAMQSHLKKVHNFSNPNRFDCCFCSEIFNLKKDYHEHLKK 597
+ S + C C+ F S ++ H +K H P F+C C + + K++ EH +
Sbjct: 1 GSSGSSGVECPTCHKKFLSKYYLKVHNRK-HTGEKP--FECPKCGKCYFRKENLLEHEAR 57
Query: 598 EHGQTTSGTRRFQLCACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMR 657
R Q+ C+ C F L +H H+ E Y+C C + F KK ++
Sbjct: 58 -----NCMNRSEQVFTCSVCQETFRRRMELRLHM-VSHTGEMPYKCSSCSQQFMQKKDLQ 111
Query: 658 EHIKRIH 664
H+ ++H
Sbjct: 112 SHMIKLH 118
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 13/107 (12%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHIN------- 666
C C + F + L +H R H+ E ++C CGK + K+ + EH R +N
Sbjct: 10 CPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 667 ----QGRVRKQREPRP-PAKPDSEKPFKCNLCGTGFESDRQVSGHRV 708
Q R++ E R E P+KC+ C F + + H +
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMI 115
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 384 QCSQCPKKFYRNSKLNAHLKIHTEERACFCDICNHS-FKTDNEVKKHKR-FVHTDERPHA 441
+C C KKF L H + HT E+ C C F+ +N ++ R ++ E+
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 442 CQYCSATFKKSDHLKRHSKTAHKEM-YQSEDIDQQTI 477
C C TF++ L+ H + EM Y+ QQ +
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFM 105
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 119 EKPFVC--ESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSDL 176
E+P+ C ESC + FS S+L H IHT Q ++C C + F R+ LT+H++TH+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTG-QKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 177 RPYECDICNASFKTNYERKKH 197
+P+ CDIC F + ERK+H
Sbjct: 61 KPFACDICGRKFARSDERKRH 81
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 62 EKLFIC--EECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGE 119
E+ + C E C ++F SS L RH + +H K C +C + FS +LT H R HTGE
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 120 KPFVCESCGKSFSQHSSLFIHKMIHTQRQ 148
KPF C+ CG+ F++ H IH +++
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 349 DKPYVC--ETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHLKIHT 406
++PY C E+C + F+ +++L H + ++ FQC C + F R+ L H++ HT
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRH---IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Query: 407 EERACFCDICNHSFKTDNEVKKHKRF 432
E+ CDIC F +E K+H +
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKI 84
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 388 CPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSA 447
C ++F +S L H++IHT ++ C IC +F + + H R HT E+P AC C
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGR 70
Query: 448 TFKKSDHLKRHSK 460
F +SD KRH+K
Sbjct: 71 KFARSDERKRHTK 83
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 146 QRQYRYECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSET 205
+R Y C ++F +S LT H++ H+ +P++C IC +F + H I H+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGE 60
Query: 206 RPYQCNLCNASFKRPGHLKQHGKTH 230
+P+ C++C F R K+H K H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 298 EQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAAHKKTHSGDKPYVCETC 357
E C ++ RH++ +H K C +C + FS +L H +TH+G+KP+ C+ C
Sbjct: 10 ESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 358 GKSFAQNASLKYH 370
G+ FA++ K H
Sbjct: 69 GRKFARSDERKRH 81
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 329 CGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQC 388
C + FS +NL H + H+G KP+ C C ++F+++ L H + ++ F C C
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH---IRTHTGEKPFACDIC 68
Query: 389 PKKFYRNSKLNAHLKIHTEER 409
+KF R+ + H KIH ++
Sbjct: 69 GRKFARSDERKRHTKIHLRQK 89
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 37 PYVLPH---SRQHLSKYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKD 93
PY P R+ +L H+RIHT +K F C C + F S L H + H K
Sbjct: 4 PYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKP 62
Query: 94 HSCDVCGKVFSCPTNLTVHKRVHTGEK 120
+CD+CG+ F+ H ++H +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKD 323
+QC +C R D L H++ HTGEK C+ CG++ KRH K +HL+ KD
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQKD 90
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 16/92 (17%)
Query: 766 EPPFACP--QCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPE 823
E P+ACP C + ++ S+L H+ G++ P C C +RN R HL
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQK--PFQCRIC------MRNFSRSDHLTTH 53
Query: 824 VR------PHMCDLCGARFKKSSALLQHRPIH 849
+R P CD+CG +F +S +H IH
Sbjct: 54 IRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 798 PTVC--EACGKHVINIRNHMRQVHLYPEVRPHMCDLCGARFKKSSALLQHRPIHTGER-H 854
P C E+C + + N R + ++ +P C +C F +S L H HTGE+
Sbjct: 4 PYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 855 ICPVCGRGFTQRGAMKKHV 873
C +CGR F + K+H
Sbjct: 64 ACDICGRKFARSDERKRHT 82
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 177 RPYECDI--CNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
RPY C + C+ F + +H I +H+ +P+QC +C +F R HL H +TH E
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 52 LKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKD 93
L H+R HT EK F C+ CG++F S +RH K +HL+ KD
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQKD 90
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 267 YQCPM--CQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDL 324
Y CP+ C L H+++HTG+K C C + H+++ H K
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 325 CCDMCGKAFSCQTNLAAHKKTH 346
CD+CG+ F+ H K H
Sbjct: 64 ACDICGRKFARSDERKRHTKIH 85
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 410 ACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
AC + C+ F + + +H R +HT ++P C+ C F +SDHL H +T
Sbjct: 6 ACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 20/86 (23%)
Query: 612 CACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVR 671
C C R F ++ L H R +H+ + +QC C + F ++ HI R H
Sbjct: 7 CPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTG----- 59
Query: 672 KQREPRPPAKPDSEKPFKCNLCGTGF 697
EKPF C++CG F
Sbjct: 60 -------------EKPFACDICGRKF 72
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 599 HGQTTSGTRRFQLCACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMRE 658
H + +G + FQ C C R F + L H R H+ E + CD CG+ F +
Sbjct: 25 HIRIHTGQKPFQ---CRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKR 80
Query: 659 HIKRIHINQ 667
H K IH+ Q
Sbjct: 81 HTK-IHLRQ 88
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 119 EKPFVC--ESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSDL 176
E+P+ C ESC + FS+ + L H IHT Q ++C C + F R+ LT+H++TH+
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTG-QKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 177 RPYECDICNASFKTNYERKKH 197
+P+ CDIC F + ERK+H
Sbjct: 61 KPFACDICGRKFARSDERKRH 81
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 62 EKLFIC--EECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGE 119
E+ + C E C ++F S+ L RH + +H K C +C + FS +LT H R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 120 KPFVCESCGKSFSQHSSLFIHKMIHTQRQ 148
KPF C+ CG+ F++ H IH +++
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 388 CPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSA 447
C ++F R++ L H++IHT ++ C IC +F + + H R HT E+P AC C
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGR 70
Query: 448 TFKKSDHLKRHSK 460
F +SD KRH+K
Sbjct: 71 KFARSDERKRHTK 83
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 349 DKPYVC--ETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHLKIHT 406
++PY C E+C + F+++A L H + ++ FQC C + F R+ L H++ HT
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRH---IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Query: 407 EERACFCDICNHSFKTDNEVKKH 429
E+ CDIC F +E K+H
Sbjct: 59 GEKPFACDICGRKFARSDERKRH 81
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 146 QRQYRYECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSET 205
+R Y C ++F R++ LT H++ H+ +P++C IC +F + H I H+
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGE 60
Query: 206 RPYQCNLCNASFKRPGHLKQHGKTH 230
+P+ C++C F R K+H K H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 298 EQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAAHKKTHSGDKPYVCETC 357
E C ++ RH++ +H K C +C + FS +L H +TH+G+KP+ C+ C
Sbjct: 10 ESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 358 GKSFAQNASLKYH 370
G+ FA++ K H
Sbjct: 69 GRKFARSDERKRH 81
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 329 CGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQC 388
C + FS +L H + H+G KP+ C C ++F+++ L H + ++ F C C
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH---IRTHTGEKPFACDIC 68
Query: 389 PKKFYRNSKLNAHLKIHTEER 409
+KF R+ + H KIH ++
Sbjct: 69 GRKFARSDERKRHTKIHLRQK 89
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 47/120 (39%), Gaps = 34/120 (28%)
Query: 206 RPYQCNL--CNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITWGVD 263
RPY C + C+ F R L +H + H +
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKP---------------------------- 34
Query: 264 MVRYQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKD 323
+QC +C R D L H++ HTGEK C+ CG++ KRH K +HL+ KD
Sbjct: 35 ---FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQKD 90
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 37 PYVLPH---SRQHLSKYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKD 93
PY P R+ L H+RIHT +K F C C + F S L H + H K
Sbjct: 4 PYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKP 62
Query: 94 HSCDVCGKVFSCPTNLTVHKRVHTGEK 120
+CD+CG+ F+ H ++H +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 177 RPYECDI--CNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
RPY C + C+ F + + +H I +H+ +P+QC +C +F R HL H +TH E
Sbjct: 3 RPYACPVESCDRRFSRSADLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 16/92 (17%)
Query: 766 EPPFACP--QCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPE 823
E P+ACP C + +++ + L H+ G++ P C C +RN R HL
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQK--PFQCRIC------MRNFSRSDHLTTH 53
Query: 824 VR------PHMCDLCGARFKKSSALLQHRPIH 849
+R P CD+CG +F +S +H IH
Sbjct: 54 IRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 52 LKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKD 93
L H+R HT EK F C+ CG++F S +RH K +HL+ KD
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQKD 90
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 798 PTVC--EACGKHVINIRNHMRQVHLYPEVRPHMCDLCGARFKKSSALLQHRPIHTGER-H 854
P C E+C + + R + ++ +P C +C F +S L H HTGE+
Sbjct: 4 PYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 855 ICPVCGRGFTQRGAMKKHV 873
C +CGR F + K+H
Sbjct: 64 ACDICGRKFARSDERKRHT 82
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 410 ACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
AC + C+ F ++ +H R +HT ++P C+ C F +SDHL H +T
Sbjct: 6 ACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 20/86 (23%)
Query: 612 CACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVR 671
C C R F + L H R +H+ + +QC C + F ++ HI R H
Sbjct: 7 CPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTG----- 59
Query: 672 KQREPRPPAKPDSEKPFKCNLCGTGF 697
EKPF C++CG F
Sbjct: 60 -------------EKPFACDICGRKF 72
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 581 CSEIFNLKKDYHEHLKKEHGQTTSGTRRFQLCACTDCGRMFYNNGALGIHRRAVHSQENT 640
C F+ D H++ GQ FQ C C R F + L H R H+ E
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKP-----FQ---CRICMRNFSRSDHLTTHIR-THTGEKP 62
Query: 641 YQCDPCGKVFPSKKYMREHIKRIHINQ 667
+ CD CG+ F + H K IH+ Q
Sbjct: 63 FACDICGRKFARSDERKRHTK-IHLRQ 88
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 119 EKPFVC--ESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSDL 176
E+P+ C ESC + FS+ + L H IHT Q ++C C + F R+ LT+H++TH+
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTG-QKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 177 RPYECDICNASFKTNYERKKH 197
+P+ CDIC F + ERK+H
Sbjct: 61 KPFACDICGRKFARSDERKRH 81
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 62 EKLFIC--EECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGE 119
E+ + C E C ++F S+ L RH + +H K C +C + FS +LT H R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 120 KPFVCESCGKSFSQHSSLFIHKMIHTQRQ 148
KPF C+ CG+ F++ H IH +++
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 388 CPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSA 447
C ++F R+++L H++IHT ++ C IC +F + + H R HT E+P AC C
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGR 70
Query: 448 TFKKSDHLKRHSK 460
F +SD KRH+K
Sbjct: 71 KFARSDERKRHTK 83
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 349 DKPYVC--ETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHLKIHT 406
++PY C E+C + F+++A L H + ++ FQC C + F R+ L H++ HT
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRH---IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Query: 407 EERACFCDICNHSFKTDNEVKKH 429
E+ CDIC F +E K+H
Sbjct: 59 GEKPFACDICGRKFARSDERKRH 81
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 146 QRQYRYECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSET 205
+R Y C ++F R+++LT H++ H+ +P++C IC +F + H I H+
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGE 60
Query: 206 RPYQCNLCNASFKRPGHLKQHGKTH 230
+P+ C++C F R K+H K H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 298 EQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAAHKKTHSGDKPYVCETC 357
E C ++ RH++ +H K C +C + FS +L H +TH+G+KP+ C+ C
Sbjct: 10 ESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Query: 358 GKSFAQNASLKYH 370
G+ FA++ K H
Sbjct: 69 GRKFARSDERKRH 81
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 327 DMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCS 386
+ C + FS L H + H+G KP+ C C ++F+++ L H + ++ F C
Sbjct: 10 ESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH---IRTHTGEKPFACD 66
Query: 387 QCPKKFYRNSKLNAHLKIHTEER 409
C +KF R+ + H KIH ++
Sbjct: 67 ICGRKFARSDERKRHTKIHLRQK 89
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 47/120 (39%), Gaps = 34/120 (28%)
Query: 206 RPYQCNL--CNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITWGVD 263
RPY C + C+ F R L +H + H +
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKP---------------------------- 34
Query: 264 MVRYQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKD 323
+QC +C R D L H++ HTGEK C+ CG++ KRH K +HL+ KD
Sbjct: 35 ---FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQKD 90
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 177 RPYECDI--CNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
RPY C + C+ F + E +H I +H+ +P+QC +C +F R HL H +TH E
Sbjct: 3 RPYACPVESCDRRFSRSAELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 37 PYVLPH---SRQHLSKYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKD 93
PY P R+ L H+RIHT +K F C C + F S L H + H K
Sbjct: 4 PYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKP 62
Query: 94 HSCDVCGKVFSCPTNLTVHKRVHTGEK 120
+CD+CG+ F+ H ++H +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 16/92 (17%)
Query: 766 EPPFACP--QCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPE 823
E P+ACP C + +++ + L H+ G++ P C C +RN R HL
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQK--PFQCRIC------MRNFSRSDHLTTH 53
Query: 824 VR------PHMCDLCGARFKKSSALLQHRPIH 849
+R P CD+CG +F +S +H IH
Sbjct: 54 IRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 52 LKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKD 93
L H+R HT EK F C+ CG++F S +RH K +HL+ KD
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQKD 90
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 798 PTVC--EACGKHVINIRNHMRQVHLYPEVRPHMCDLCGARFKKSSALLQHRPIHTGER-H 854
P C E+C + R + ++ +P C +C F +S L H HTGE+
Sbjct: 4 PYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 855 ICPVCGRGFTQRGAMKKHV 873
C +CGR F + K+H
Sbjct: 64 ACDICGRKFARSDERKRHT 82
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 410 ACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
AC + C+ F E+ +H R +HT ++P C+ C F +SDHL H +T
Sbjct: 6 ACPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 20/86 (23%)
Query: 612 CACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVR 671
C C R F + L H R +H+ + +QC C + F ++ HI R H
Sbjct: 7 CPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTG----- 59
Query: 672 KQREPRPPAKPDSEKPFKCNLCGTGF 697
EKPF C++CG F
Sbjct: 60 -------------EKPFACDICGRKF 72
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 581 CSEIFNLKKDYHEHLKKEHGQTTSGTRRFQLCACTDCGRMFYNNGALGIHRRAVHSQENT 640
C F+ + H++ GQ FQ C C R F + L H R H+ E
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKP-----FQ---CRICMRNFSRSDHLTTHIR-THTGEKP 62
Query: 641 YQCDPCGKVFPSKKYMREHIKRIHINQ 667
+ CD CG+ F + H K IH+ Q
Sbjct: 63 FACDICGRKFARSDERKRHTK-IHLRQ 88
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 119 EKPFVC--ESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSDL 176
E+P+ C ESC + FS+ L H IHT Q ++C C + F R+ LT+H++TH+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTG-QKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 177 RPYECDICNASFKTNYERKKH 197
+P+ CDIC F + ERK+H
Sbjct: 61 KPFACDICGRKFARSDERKRH 81
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 62 EKLFIC--EECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGE 119
E+ + C E C ++F S L RH + +H K C +C + FS +LT H R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 120 KPFVCESCGKSFSQHSSLFIHKMIHTQRQ 148
KPF C+ CG+ F++ H IH +++
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 388 CPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSA 447
C ++F R+ +L H++IHT ++ C IC +F + + H R HT E+P AC C
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGR 70
Query: 448 TFKKSDHLKRHSK 460
F +SD KRH+K
Sbjct: 71 KFARSDERKRHTK 83
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 146 QRQYRYECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSET 205
+R Y C ++F R+ +LT H++ H+ +P++C IC +F + H I H+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGE 60
Query: 206 RPYQCNLCNASFKRPGHLKQHGKTH 230
+P+ C++C F R K+H K H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 349 DKPYVC--ETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHLKIHT 406
++PY C E+C + F+++ L H + ++ FQC C + F R+ L H++ HT
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRH---IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Query: 407 EERACFCDICNHSFKTDNEVKKH 429
E+ CDIC F +E K+H
Sbjct: 59 GEKPFACDICGRKFARSDERKRH 81
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 31/106 (29%)
Query: 267 YQCPM--CQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDL 324
Y CP+ C R D L H+++HTG+K C
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCR-------------------------- 38
Query: 325 CCDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+C + FS +L H +TH+G+KP+ C+ CG+ FA++ K H
Sbjct: 39 ---ICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 329 CGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQC 388
C + FS L H + H+G KP+ C C ++F+++ L H + ++ F C C
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH---IRTHTGEKPFACDIC 68
Query: 389 PKKFYRNSKLNAHLKIHTEER 409
+KF R+ + H KIH ++
Sbjct: 69 GRKFARSDERKRHTKIHLRQK 89
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 47/120 (39%), Gaps = 34/120 (28%)
Query: 206 RPYQCNL--CNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITWGVD 263
RPY C + C+ F R L +H + H +
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKP---------------------------- 34
Query: 264 MVRYQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKD 323
+QC +C R D L H++ HTGEK C+ CG++ KRH K +HL+ KD
Sbjct: 35 ---FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQKD 90
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 177 RPYECDI--CNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
RPY C + C+ F + E +H I +H+ +P+QC +C +F R HL H +TH E
Sbjct: 3 RPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 37 PYVLPH---SRQHLSKYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKD 93
PY P R+ L H+RIHT +K F C C + F S L H + H K
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKP 62
Query: 94 HSCDVCGKVFSCPTNLTVHKRVHTGEK 120
+CD+CG+ F+ H ++H +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 16/92 (17%)
Query: 766 EPPFACP--QCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPE 823
E P+ACP C + +++ L H+ G++ P C C +RN R HL
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQK--PFQCRIC------MRNFSRSDHLTTH 53
Query: 824 VR------PHMCDLCGARFKKSSALLQHRPIH 849
+R P CD+CG +F +S +H IH
Sbjct: 54 IRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 52 LKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKD 93
L H+R HT EK F C+ CG++F S +RH K +HL+ KD
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLRQKD 90
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 798 PTVC--EACGKHVINIRNHMRQVHLYPEVRPHMCDLCGARFKKSSALLQHRPIHTGER-H 854
P C E+C + R + ++ +P C +C F +S L H HTGE+
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 855 ICPVCGRGFTQRGAMKKHV 873
C +CGR F + K+H
Sbjct: 64 ACDICGRKFARSDERKRHT 82
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 410 ACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
AC + C+ F +E+ +H R +HT ++P C+ C F +SDHL H +T
Sbjct: 6 ACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 20/86 (23%)
Query: 612 CACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVR 671
C C R F + L H R +H+ + +QC C + F ++ HI R H
Sbjct: 7 CPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTG----- 59
Query: 672 KQREPRPPAKPDSEKPFKCNLCGTGF 697
EKPF C++CG F
Sbjct: 60 -------------EKPFACDICGRKF 72
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 581 CSEIFNLKKDYHEHLKKEHGQTTSGTRRFQLCACTDCGRMFYNNGALGIHRRAVHSQENT 640
C F+ + H++ GQ FQ C C R F + L H R H+ E
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKP-----FQ---CRICMRNFSRSDHLTTHIR-THTGEKP 62
Query: 641 YQCDPCGKVFPSKKYMREHIKRIHINQ 667
+ CD CG+ F + H K IH+ Q
Sbjct: 63 FACDICGRKFARSDERKRHTK-IHLRQ 88
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 119 EKPFVC--ESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSDL 176
E+P+ C ESC + FS+ L H IHT Q ++C C + F R+ LT+H++TH+
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTG-QKPFQCRICMRNFSRSDHLTTHIRTHTGE 59
Query: 177 RPYECDICNASFKTNYERKKH 197
+P+ CDIC F + ERK+H
Sbjct: 60 KPFACDICGRKFARSDERKRH 80
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 62 EKLFIC--EECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGE 119
E+ + C E C ++F S L RH + +H K C +C + FS +LT H R HTGE
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59
Query: 120 KPFVCESCGKSFSQHSSLFIHKMIH 144
KPF C+ CG+ F++ H IH
Sbjct: 60 KPFACDICGRKFARSDERKRHTKIH 84
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 388 CPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSA 447
C ++F R+ +L H++IHT ++ C IC +F + + H R HT E+P AC C
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGR 69
Query: 448 TFKKSDHLKRHSK 460
F +SD KRH+K
Sbjct: 70 KFARSDERKRHTK 82
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 146 QRQYRYECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSET 205
+R Y C ++F R+ +LT H++ H+ +P++C IC +F + H I H+
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGE 59
Query: 206 RPYQCNLCNASFKRPGHLKQHGKTH 230
+P+ C++C F R K+H K H
Sbjct: 60 KPFACDICGRKFARSDERKRHTKIH 84
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 349 DKPYVC--ETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHLKIHT 406
++PY C E+C + F+++ L H + ++ FQC C + F R+ L H++ HT
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRH---IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 57
Query: 407 EERACFCDICNHSFKTDNEVKKH 429
E+ CDIC F +E K+H
Sbjct: 58 GEKPFACDICGRKFARSDERKRH 80
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 31/106 (29%)
Query: 267 YQCPM--CQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDL 324
Y CP+ C R D L H+++HTG+K C
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCR-------------------------- 37
Query: 325 CCDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+C + FS +L H +TH+G+KP+ C+ CG+ FA++ K H
Sbjct: 38 ---ICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 80
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 327 DMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCS 386
+ C + FS L H + H+G KP+ C C ++F+++ L H + ++ F C
Sbjct: 9 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH---IRTHTGEKPFACD 65
Query: 387 QCPKKFYRNSKLNAHLKIHTEE 408
C +KF R+ + H KIH +
Sbjct: 66 ICGRKFARSDERKRHTKIHLRQ 87
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 177 RPYECDI--CNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
RPY C + C+ F + E +H I +H+ +P+QC +C +F R HL H +TH E
Sbjct: 2 RPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 16/92 (17%)
Query: 766 EPPFACP--QCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPE 823
E P+ACP C + +++ L H+ G++ P C C +RN R HL
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQK--PFQCRIC------MRNFSRSDHLTTH 52
Query: 824 VR------PHMCDLCGARFKKSSALLQHRPIH 849
+R P CD+CG +F +S +H IH
Sbjct: 53 IRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 37 PYVLPH---SRQHLSKYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKD 93
PY P R+ L H+RIHT +K F C C + F S L H + H K
Sbjct: 3 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKP 61
Query: 94 HSCDVCGKVFSCPTNLTVHKRVH 116
+CD+CG+ F+ H ++H
Sbjct: 62 FACDICGRKFARSDERKRHTKIH 84
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 45/117 (38%), Gaps = 34/117 (29%)
Query: 206 RPYQCNL--CNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITWGVD 263
RPY C + C+ F R L +H + H +
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKP---------------------------- 33
Query: 264 MVRYQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLK 320
+QC +C R D L H++ HTGEK C+ CG++ KRH K +HL+
Sbjct: 34 ---FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLR 86
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 410 ACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
AC + C+ F +E+ +H R +HT ++P C+ C F +SDHL H +T
Sbjct: 5 ACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT 55
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 798 PTVC--EACGKHVINIRNHMRQVHLYPEVRPHMCDLCGARFKKSSALLQHRPIHTGER-H 854
P C E+C + R + ++ +P C +C F +S L H HTGE+
Sbjct: 3 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 62
Query: 855 ICPVCGRGFTQRGAMKKHV 873
C +CGR F + K+H
Sbjct: 63 ACDICGRKFARSDERKRHT 81
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 52 LKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLK 90
L H+R HT EK F C+ CG++F S +RH K +HL+
Sbjct: 49 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLR 86
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 20/86 (23%)
Query: 612 CACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVR 671
C C R F + L H R +H+ + +QC C + F ++ HI R H
Sbjct: 6 CPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTG----- 58
Query: 672 KQREPRPPAKPDSEKPFKCNLCGTGF 697
EKPF C++CG F
Sbjct: 59 -------------EKPFACDICGRKF 71
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 581 CSEIFNLKKDYHEHLKKEHGQTTSGTRRFQLCACTDCGRMFYNNGALGIHRRAVHSQENT 640
C F+ + H++ GQ FQ C C R F + L H R H+ E
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKP-----FQ---CRICMRNFSRSDHLTTHIR-THTGEKP 61
Query: 641 YQCDPCGKVFPSKKYMREHIKRIHINQ 667
+ CD CG+ F + H K IH+ Q
Sbjct: 62 FACDICGRKFARSDERKRHTK-IHLRQ 87
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 119 EKPFVC--ESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSDL 176
E+P+ C ESC + FS+ L H IHT Q ++C C + F R+ LT+H++TH+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTG-QKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 177 RPYECDICNASFKTNYERKKH 197
+P+ CDIC F + ERK+H
Sbjct: 61 KPFACDICGRKFARSDERKRH 81
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 62 EKLFIC--EECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGE 119
E+ + C E C ++F S L RH + +H K C +C + FS +LT H R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 120 KPFVCESCGKSFSQHSSLFIHKMIH 144
KPF C+ CG+ F++ H IH
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 388 CPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSA 447
C ++F R+ +L H++IHT ++ C IC +F + + H R HT E+P AC C
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGR 70
Query: 448 TFKKSDHLKRHSK 460
F +SD KRH+K
Sbjct: 71 KFARSDERKRHTK 83
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 146 QRQYRYECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSET 205
+R Y C ++F R+ +LT H++ H+ +P++C IC +F + H I H+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGE 60
Query: 206 RPYQCNLCNASFKRPGHLKQHGKTH 230
+P+ C++C F R K+H K H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 349 DKPYVC--ETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHLKIHT 406
++PY C E+C + F+++ L H + ++ FQC C + F R+ L H++ HT
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRH---IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Query: 407 EERACFCDICNHSFKTDNEVKKH 429
E+ CDIC F +E K+H
Sbjct: 59 GEKPFACDICGRKFARSDERKRH 81
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 31/106 (29%)
Query: 267 YQCPM--CQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDL 324
Y CP+ C R D L H+++HTG+K C
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCR-------------------------- 38
Query: 325 CCDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+C + FS +L H +TH+G+KP+ C+ CG+ FA++ K H
Sbjct: 39 ---ICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 327 DMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCS 386
+ C + FS L H + H+G KP+ C C ++F+++ L H + ++ F C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH---IRTHTGEKPFACD 66
Query: 387 QCPKKFYRNSKLNAHLKIH 405
C +KF R+ + H KIH
Sbjct: 67 ICGRKFARSDERKRHTKIH 85
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 177 RPYECDI--CNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
RPY C + C+ F + E +H I +H+ +P+QC +C +F R HL H +TH E
Sbjct: 3 RPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 16/92 (17%)
Query: 766 EPPFACP--QCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPE 823
E P+ACP C + +++ L H+ G++ P C C +RN R HL
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQK--PFQCRIC------MRNFSRSDHLTTH 53
Query: 824 VR------PHMCDLCGARFKKSSALLQHRPIH 849
+R P CD+CG +F +S +H IH
Sbjct: 54 IRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 37 PYVLPH---SRQHLSKYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKD 93
PY P R+ L H+RIHT +K F C C + F S L H + H K
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKP 62
Query: 94 HSCDVCGKVFSCPTNLTVHKRVH 116
+CD+CG+ F+ H ++H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 45/117 (38%), Gaps = 34/117 (29%)
Query: 206 RPYQCNL--CNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITWGVD 263
RPY C + C+ F R L +H + H +
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKP---------------------------- 34
Query: 264 MVRYQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLK 320
+QC +C R D L H++ HTGEK C+ CG++ KRH K +HL+
Sbjct: 35 ---FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLR 87
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 405 HTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
H AC + C+ F +E+ +H R +HT ++P C+ C F +SDHL H +T
Sbjct: 1 HERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 798 PTVC--EACGKHVINIRNHMRQVHLYPEVRPHMCDLCGARFKKSSALLQHRPIHTGER-H 854
P C E+C + R + ++ +P C +C F +S L H HTGE+
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 855 ICPVCGRGFTQRGAMKKHV 873
C +CGR F + K+H
Sbjct: 64 ACDICGRKFARSDERKRHT 82
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 52 LKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLK 90
L H+R HT EK F C+ CG++F S +RH K +HL+
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTK-IHLR 87
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 20/86 (23%)
Query: 612 CACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVR 671
C C R F + L H R +H+ + +QC C + F ++ HI R H
Sbjct: 7 CPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTG----- 59
Query: 672 KQREPRPPAKPDSEKPFKCNLCGTGF 697
EKPF C++CG F
Sbjct: 60 -------------EKPFACDICGRKF 72
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 599 HGQTTSGTRRFQLCACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMRE 658
H + +G + FQ C C R F + L H R H+ E + CD CG+ F +
Sbjct: 25 HIRIHTGQKPFQ---CRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKR 80
Query: 659 HIKRIHI 665
H K IH+
Sbjct: 81 HTK-IHL 86
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 383 FQCSQCPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
F C C K F R+S L+ HL IH++ R C C F +++KKH F+HT E+PH C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHKC 60
Query: 443 QYCSATFKKSDHLKRHSK 460
Q C F +S +L HS+
Sbjct: 61 QVCGKAFSQSSNLITHSR 78
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 65 FICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVC 124
F C+ CGK F SS L H +H + + C CGK F +++ H +HTGEKP C
Sbjct: 2 FDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 125 ESCGKSFSQHSSLFIHKMIHT 145
+ CGK+FSQ S+L H HT
Sbjct: 61 QVCGKAFSQSSNLITHSRKHT 81
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 151 YECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSETRPYQC 210
++C C K F R+S L++HL HSD RPY C C F + KKH ++H+ +P++C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHKC 60
Query: 211 NLCNASFKRPGHLKQHGKTHN 231
+C +F + +L H + H
Sbjct: 61 QVCGKAFSQSSNLITHSRKHT 81
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 51 SLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLT 110
+L H+ IH+ + + C+ CGK+F S +++H +H K H C VCGK FS +NL
Sbjct: 16 TLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHKCQVCGKAFSQSSNLI 74
Query: 111 VHKRVHTG 118
H R HTG
Sbjct: 75 THSRKHTG 82
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCC 326
+ C +C KR TL HL +H+ + C+ CGK+ H K+H +H K C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHKC 60
Query: 327 DMCGKAFSCQTNLAAHKKTHSG 348
+CGKAFS +NL H + H+G
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 96 CDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
C +CGK F + L+ H +H+ +P+ C+ CGK F Q S + H IHT + ++C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEK-PHKCQV 62
Query: 156 CQKKFFRNSKLTSHLKTHS 174
C K F ++S L +H + H+
Sbjct: 63 CGKAFSQSSNLITHSRKHT 81
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 801 CEACGKHVINIRNHMRQVHLYPEVRPHMCDLCGARFKKSSALLQHRPIHTGER-HICPVC 859
C+ CGK + ++ + RP+ C CG RF + S + +H IHTGE+ H C VC
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 860 GRGFTQRGAMKKH 872
G+ F+Q + H
Sbjct: 64 GKAFSQSSNLITH 76
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQC 385
C +CGK+F + L+ H HS +PY C+ CGK F Q + +K H +H K +C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMK-KHTFIHTGEKPH--KC 60
Query: 386 SQCPKKFYRNSKLNAHLKIHT 406
C K F ++S L H + HT
Sbjct: 61 QVCGKAFSQSSNLITHSRKHT 81
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 769 FACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPEVRPHM 828
F C CGK + + S+L HL R P C+ CGK + + ++ +PH
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYP--CQYCGKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 829 CDLCGARFKKSSALLQHRPIHTG 851
C +CG F +SS L+ H HTG
Sbjct: 60 CQVCGKAFSQSSNLITHSRKHTG 82
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 297 CEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C+ CGK HL +H + C CGK F ++++ H H+G+KP+ C+
Sbjct: 4 CKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 357 CGKSFAQNASLKYH 370
CGK+F+Q+++L H
Sbjct: 63 CGKAFSQSSNLITH 76
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 352 YVCETCGKSFAQNASLKYHHDTVHALV--KKRLFQCSQCPKKFYRNSKLNAHLKIHTEER 409
+ C+ CGKSF ++++L + H L+ R + C C K+F++ S + H IHT E+
Sbjct: 2 FDCKICGKSFKRSSTL-----STHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEK 56
Query: 410 ACFCDICNHSFKTDNEVKKHKR 431
C +C +F + + H R
Sbjct: 57 PHKCQVCGKAFSQSSNLITHSR 78
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 179 YECDICNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
++C IC SFK + H + +HS+TRPY C C F + +K+H H E
Sbjct: 2 FDCKICGKSFKRSSTLSTH-LLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGE 55
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 20/93 (21%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQ 673
C CG+ F + L H +HS Y C CGK F K M++H IH
Sbjct: 4 CKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTG------- 54
Query: 674 REPRPPAKPDSEKPFKCNLCGTGFESDRQVSGH 706
EKP KC +CG F + H
Sbjct: 55 -----------EKPHKCQVCGKAFSQSSNLITH 76
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 8 TFVIKLSNKNASWQNTTEMYISLLDLTSVPYVLPH-SRQHLSKYSLKNHVRIHTKEKLFI 66
+F K+ K+ +T ++ L+ + PY + ++ K +K H IHT EK
Sbjct: 1 SFDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 67 CEECGKQFVTSSALRRHKK 85
C+ CGK F SS L H +
Sbjct: 60 CQVCGKAFSQSSNLITHSR 78
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 576 FDCCFCSEIFNLKKDYHEHLKKEHGQTTSGTRRFQLCACTDCGRMFYNNGALGIHRRAVH 635
FDC C + F HL S TR + C CG+ F+ + H +H
Sbjct: 2 FDCKICGKSFKRSSTLSTHL-----LIHSDTRPY---PCQYCGKRFHQKSDMKKHT-FIH 52
Query: 636 SQENTYQCDPCGKVFPSKKYMREHIKR 662
+ E ++C CGK F + H ++
Sbjct: 53 TGEKPHKCQVCGKAFSQSSNLITHSRK 79
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 52 LKNHVRIHTKEKLFICE--ECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNL 109
L+ H R HT EK + C+ +C ++F S L+RH++ H +K C C + FS +L
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTGVKPFQCKTCQRKFSRSDHL 82
Query: 110 TVHKRVHTGEKPFVCE--SCGKSFSQHSSLFIHKMIH 144
H R HTGEKPF C SC K F++ L H +H
Sbjct: 83 KTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 58/136 (42%), Gaps = 32/136 (23%)
Query: 156 CQKKFFRNSKLTSHLKTHSDLRPYECDI--CNASFKTNYERKKHRIYVHSETRPYQCNLC 213
C K++F+ S L H + H+ +PY+CD C F + + K+H+ H+ +P+QC C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-RHTGVKPFQCKTC 72
Query: 214 NASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITWGVDMVRYQCPMCQ 273
F R HLK H +TH E FSC+ W P CQ
Sbjct: 73 QRKFSRSDHLKTHTRTHTGEK-------PFSCR-------------W---------PSCQ 103
Query: 274 IVLKRKDTLRHHLKLH 289
R D L H +H
Sbjct: 104 KKFARSDELVRHHNMH 119
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 60 TKEKLFICE--ECGKQFVTSSALRRHKKAVHLKIKDHSCDV--CGKVFSCPTNLTVHKRV 115
++++ F+C C K++ S L+ H + H K + CD C + FS L H+R
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRK-HTGEKPYQCDFKDCERRFSRSDQLKRHQRR 60
Query: 116 HTGEKPFVCESCGKSFSQHSSLFIHKMIHT-QRQYRYECSHCQKKFFRNSKLTSHLKTH 173
HTG KPF C++C + FS+ L H HT ++ + CQKKF R+ +L H H
Sbjct: 61 HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 329 CGKAFSCQTNLAAHKKTHSGDKPYVCE--TCGKSFAQNASLKYHHDTVHALVKKRLFQCS 386
C K + ++L H + H+G+KPY C+ C + F+++ LK H H VK FQC
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLK-RHQRRHTGVKP--FQCK 70
Query: 387 QCPKKFYRNSKLNAHLKIHTEER--ACFCDICNHSFKTDNEVKKH 429
C +KF R+ L H + HT E+ +C C F +E+ +H
Sbjct: 71 TCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 379 KKRLFQCSQ--CPKKFYRNSKLNAHLKIHTEERACFCDI--CNHSFKTDNEVKKHKRFVH 434
+KR F C+ C K++++ S L H + HT E+ CD C F +++K+H+R H
Sbjct: 3 EKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-RH 61
Query: 435 TDERPHACQYCSATFKKSDHLKRHSKT 461
T +P C+ C F +SDHLK H++T
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRT 88
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 6/117 (5%)
Query: 119 EKPFVCE--SCGKSFSQHSSLFIHKMIHT-QRQYRYECSHCQKKFFRNSKLTSHLKTHSD 175
++PF+C C K + + S L +H HT ++ Y+ + C+++F R+ +L H + H+
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63
Query: 176 LRPYECDICNASFKTNYERKKHRIYVHSETRPYQCNL--CNASFKRPGHLKQHGKTH 230
++P++C C F + K H H+ +P+ C C F R L +H H
Sbjct: 64 VKPFQCKTCQRKFSRSDHLKTH-TRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 62/176 (35%), Gaps = 66/176 (37%)
Query: 203 SETRPYQCNL--CNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITW 260
SE RP+ C CN + + HL+ H + H E
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKP------------------------- 36
Query: 261 GVDMVRYQCPM--CQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVH 318
YQC C+ R D L+ H + HTG
Sbjct: 37 ------YQCDFKDCERRFSRSDQLKRHQRRHTG--------------------------- 63
Query: 319 LKIKDLCCDMCGKAFSCQTNLAAHKKTHSGDKPYVCE--TCGKSFAQNASLKYHHD 372
+K C C + FS +L H +TH+G+KP+ C +C K FA++ L HH+
Sbjct: 64 --VKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHN 117
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 311 KRHLKSVHLKI--------KDLCCDM--CGKAFSCQTNLAAHKKTHSGDKPYVCETCGKS 360
KR+ K HL++ K CD C + FS L H++ H+G KP+ C+TC +
Sbjct: 16 KRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRK 75
Query: 361 FAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHLKIH 405
F+++ LK H T H K + C KKF R+ +L H +H
Sbjct: 76 FSRSDHLKTHTRT-HTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 5/114 (4%)
Query: 764 GDEPPFAC--PQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLY 821
++ PF C P C K Y K S L MH G++ + C + R +
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 822 PEVRPHMCDLCGARFKKSSALLQHRPIHTGERHI---CPVCGRGFTQRGAMKKH 872
V+P C C +F +S L H HTGE+ P C + F + + +H
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 119 EKPFVC--ESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSDL 176
E+P+ C ESC + FSQ ++L H IHT Q ++C C + F + + L +H++TH+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTG-QKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 177 RPYECDICNASFKTNYERKKH 197
+P+ CDIC F T + R +H
Sbjct: 61 KPFACDICGRKFATLHTRTRH 81
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 349 DKPYVC--ETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHLKIHT 406
++PY C E+C + F+Q +L H + ++ FQC C + F + + LNAH++ HT
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTH---IRIHTGQKPFQCRICMRNFSQQASLNAHIRTHT 58
Query: 407 EERACFCDICNHSFKTDNEVKKHKRF 432
E+ CDIC F T + +H +
Sbjct: 59 GEKPFACDICGRKFATLHTRTRHTKI 84
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 327 DMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCS 386
+ C + FS +TNL H + H+G KP+ C C ++F+Q ASL H + ++ F C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAH---IRTHTGEKPFACD 66
Query: 387 QCPKKFYRNSKLNAHLKIHTEER 409
C +KF H KIH ++
Sbjct: 67 ICGRKFATLHTRTRHTKIHLRQK 89
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 62 EKLFIC--EECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGE 119
E+ + C E C ++F + L H + +H K C +C + FS +L H R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 120 KPFVCESCGKSFSQHSSLFIHKMIH 144
KPF C+ CG+ F+ + H IH
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIH 85
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 298 EQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAAHKKTHSGDKPYVCETC 357
E C ++ H++ +H K C +C + FS Q +L AH +TH+G+KP+ C+ C
Sbjct: 10 ESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDIC 68
Query: 358 GKSFA 362
G+ FA
Sbjct: 69 GRKFA 73
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 37 PYVLPH---SRQHLSKYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKD 93
PY P R+ K +L H+RIHT +K F C C + F ++L H + H K
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIR-THTGEKP 62
Query: 94 HSCDVCGKVFSCPTNLTVHKRVHTGEK 120
+CD+CG+ F+ T H ++H +K
Sbjct: 63 FACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 388 CPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSA 447
C ++F + + L+ H++IHT ++ C IC +F + H R HT E+P AC C
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIR-THTGEKPFACDICGR 70
Query: 448 TFKKSDHLKRHSK 460
F RH+K
Sbjct: 71 KFATLHTRTRHTK 83
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 146 QRQYRYECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSET 205
+R Y C ++F + + L +H++ H+ +P++C IC +F H I H+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAH-IRTHTGE 60
Query: 206 RPYQCNLCNASFKRPGHLKQHGKTH 230
+P+ C++C F +H K H
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIH 85
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 250 KENLDSYQITWGVDMVRYQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYA 309
K NLD++ I +QC +C ++ +L H++ HTGEK C+ CG++ ++
Sbjct: 19 KTNLDTH-IRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHT 77
Query: 310 FKRHLKSVHLKIKD 323
RH K +HL+ KD
Sbjct: 78 RTRHTK-IHLRQKD 90
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 267 YQCPM--CQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDL 324
Y CP+ C +K L H+++HTG+K C C + + H+++ H K
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRT-HTGEKPF 63
Query: 325 CCDMCGKAFSCQTNLAAHKKTH 346
CD+CG+ F+ H K H
Sbjct: 64 ACDICGRKFATLHTRTRHTKIH 85
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 44 RQHLSKYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKD 93
R + SL H+R HT EK F C+ CG++F T RH K +HL+ KD
Sbjct: 42 RNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTK-IHLRQKD 90
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 16/92 (17%)
Query: 766 EPPFACP--QCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPE 823
E P+ACP C + +++K++L H+ G++ P C C +RN +Q L
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQK--PFQCRIC------MRNFSQQASLNAH 53
Query: 824 VR------PHMCDLCGARFKKSSALLQHRPIH 849
+R P CD+CG +F +H IH
Sbjct: 54 IRTHTGEKPFACDICGRKFATLHTRTRHTKIH 85
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 177 RPYECDI--CNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
RPY C + C+ F H I +H+ +P+QC +C +F + L H +TH E
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTH-IRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 825 RPHMCDL--CGARFKKSSALLQHRPIHTGERHI-CPVCGRGFTQRGAMKKHVST 875
RP+ C + C RF + + L H IHTG++ C +C R F+Q+ ++ H+ T
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRT 56
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 20/88 (22%)
Query: 612 CACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVR 671
C C R F L H R +H+ + +QC C + F + + HI R H
Sbjct: 7 CPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHI-RTHT------ 58
Query: 672 KQREPRPPAKPDSEKPFKCNLCGTGFES 699
EKPF C++CG F +
Sbjct: 59 ------------GEKPFACDICGRKFAT 74
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 581 CSEIFNLKKDYHEHLKKEHGQTTSGTRRFQLCACTDCGRMFYNNGALGIHRRAVHSQENT 640
C F+ K + H++ GQ + FQ C C R F +L H R H+ E
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQ-----KPFQ---CRICMRNFSQQASLNAHIR-THTGEKP 62
Query: 641 YQCDPCGKVFPSKKYMREHIKRIHINQ 667
+ CD CG+ F + H K IH+ Q
Sbjct: 63 FACDICGRKFATLHTRTRHTK-IHLRQ 88
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 119 EKPFVC--ESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSDL 176
E+P+ C ESC + FSQ ++L H IHT Q ++C C + F +++ L H++TH+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTG-QKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 177 RPYECDICNASFKTNYERKKH 197
+P+ CDIC F T + R +H
Sbjct: 61 KPFACDICGRKFATLHTRDRH 81
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 62 EKLFIC--EECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGE 119
E+ + C E C ++F + L H + +H K C +C + FS T L H R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 120 KPFVCESCGKSFSQHSSLFIHKMIH 144
KPF C+ CG+ F+ + H IH
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIH 85
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 349 DKPYVC--ETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHLKIHT 406
++PY C E+C + F+Q +L H + ++ FQC C + F +++ LN H++ HT
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTH---IRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHT 58
Query: 407 EERACFCDICNHSFKTDNEVKKHKRF 432
E+ CDIC F T + +H +
Sbjct: 59 GEKPFACDICGRKFATLHTRDRHTKI 84
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 327 DMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCS 386
+ C + FS +TNL H + H+G KP+ C C ++F+Q+ L H + ++ F C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQH---IRTHTGEKPFACD 66
Query: 387 QCPKKFYRNSKLNAHLKIHTEER 409
C +KF + H KIH ++
Sbjct: 67 ICGRKFATLHTRDRHTKIHLRQK 89
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 298 EQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAAHKKTHSGDKPYVCETC 357
E C ++ H++ +H K C +C + FS T L H +TH+G+KP+ C+ C
Sbjct: 10 ESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDIC 68
Query: 358 GKSFA 362
G+ FA
Sbjct: 69 GRKFA 73
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 37 PYVLPH---SRQHLSKYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKD 93
PY P R+ K +L H+RIHT +K F C C + F + L +H + H K
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIR-THTGEKP 62
Query: 94 HSCDVCGKVFSCPTNLTVHKRVHTGEK 120
+CD+CG+ F+ H ++H +K
Sbjct: 63 FACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 388 CPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSA 447
C ++F + + L+ H++IHT ++ C IC +F + +H R HT E+P AC C
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIR-THTGEKPFACDICGR 70
Query: 448 TFKKSDHLKRHSK 460
F RH+K
Sbjct: 71 KFATLHTRDRHTK 83
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 146 QRQYRYECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSET 205
+R Y C ++F + + L +H++ H+ +P++C IC +F + +H I H+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQH-IRTHTGE 60
Query: 206 RPYQCNLCNASFKRPGHLKQHGKTH 230
+P+ C++C F +H K H
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIH 85
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 242 VFSCKAK--RKENLDSYQITWGVDMVRYQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQ 299
V SC + +K NLD++ I +QC +C + L H++ HTGEK C+
Sbjct: 9 VESCDRRFSQKTNLDTH-IRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDI 67
Query: 300 CGKQLHGVYAFKRHLKSVHLKIKD 323
CG++ ++ RH K +HL+ KD
Sbjct: 68 CGRKFATLHTRDRHTK-IHLRQKD 90
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 267 YQCPM--CQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDL 324
Y CP+ C +K L H+++HTG+K C C + +H+++ H K
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRT-HTGEKPF 63
Query: 325 CCDMCGKAFSCQTNLAAHKKTH 346
CD+CG+ F+ H K H
Sbjct: 64 ACDICGRKFATLHTRDRHTKIH 85
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 51 SLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKD 93
L H+R HT EK F C+ CG++F T RH K +HL+ KD
Sbjct: 49 GLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTK-IHLRQKD 90
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 766 EPPFACP--QCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPE 823
E P+ACP C + +++K++L H+ G++ P C C ++ + + +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQK--PFQCRICMRNFSQHTGLNQHIRTHTG 59
Query: 824 VRPHMCDLCGARFKKSSALLQHRPIH 849
+P CD+CG +F +H IH
Sbjct: 60 EKPFACDICGRKFATLHTRDRHTKIH 85
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 177 RPYECDI--CNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
RPY C + C+ F H I +H+ +P+QC +C +F + L QH +TH E
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTH-IRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 825 RPHMCDL--CGARFKKSSALLQHRPIHTGERHI-CPVCGRGFTQRGAMKKHVST 875
RP+ C + C RF + + L H IHTG++ C +C R F+Q + +H+ T
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRT 56
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 20/88 (22%)
Query: 612 CACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVR 671
C C R F L H R +H+ + +QC C + F + +HI R H
Sbjct: 7 CPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHI-RTHT------ 58
Query: 672 KQREPRPPAKPDSEKPFKCNLCGTGFES 699
EKPF C++CG F +
Sbjct: 59 ------------GEKPFACDICGRKFAT 74
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 581 CSEIFNLKKDYHEHLKKEHGQTTSGTRRFQLCACTDCGRMFYNNGALGIHRRAVHSQENT 640
C F+ K + H++ GQ + FQ C C R F + L H R H+ E
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQ-----KPFQ---CRICMRNFSQHTGLNQHIR-THTGEKP 62
Query: 641 YQCDPCGKVFPSKKYMREHIKRIHINQ 667
+ CD CG+ F + H K IH+ Q
Sbjct: 63 FACDICGRKFATLHTRDRHTK-IHLRQ 88
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 35/50 (70%)
Query: 96 CDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
CD CGK FS ++L+ H+R HTGEKP+ C+ CGK+F Q S L H +HT
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 35/46 (76%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
CD CGK+FS ++L+ H++TH+G+KPY C+ CGK+F Q + L HH
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHH 66
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 63 KLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
+ + C+ECGK F SS L +H++ H K + CD CGK F ++L H RVHTG P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 150 RYECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASF 188
RY+C C K F +S L+ H +TH+ +PY+CD C +F
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF 56
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 823 EVRPHMCDLCGARFKKSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
E R + CD CG F SS L +HR HTGE+ + C CG+ F QR + H
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 607 RRFQLCACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHIN 666
RR++ C +CG+ F ++ L HRR H+ E Y+CD CGK F + ++ H R+H
Sbjct: 17 RRYK---CDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGH-HRVHTG 71
Query: 667 QG 668
G
Sbjct: 72 SG 73
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 122 FVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSDLRP 178
+ C+ CGKSFS S L H+ HT + Y+C C K F + S L H + H+ P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 175 DLRPYECDICNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQHGKTHN 231
+ R Y+CD C SF + + KHR H+ +PY+C+ C +F + HL H + H
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHR-RTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 379 KKRLFQCSQCPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDER 438
++R ++C +C K F +S L+ H + HT E+ CD C +F + + H R VHT
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR-VHTGSG 73
Query: 439 P 439
P
Sbjct: 74 P 74
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 352 YVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHLKIHT 406
Y C+ CGKSF+ ++ L H T ++ ++C +C K F + S L H ++HT
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRT---HTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 407 EERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHLKRH 458
E R CD C SF +++ KH+R HT E+P+ C C F + HL H
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 297 CEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAAHKKTHSGDKP 351
C++CGK +H + H K CD CGKAF +++L H + H+G P
Sbjct: 21 CDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 52 LKNHVRIHTKEKLFICEECGKQFVTSSAL 80
L H R HT EK + C+ECGK F+ S L
Sbjct: 34 LSKHRRTHTGEKPYKCDECGKAFIQRSHL 62
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 801 CEACGK---HVINIRNHMRQVHLYPEVRPHMCDLCGARFKKSSALLQHRPIHTG 851
C+ CGK H ++ H R + +P+ CD CG F + S L+ H +HTG
Sbjct: 21 CDECGKSFSHSSDLSKHRR---THTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 266 RYQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQL 304
RY+C C L H + HTGEK C++CGK
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF 56
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 19/66 (28%)
Query: 641 YQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFKCNLCGTGFESD 700
Y+CD CGK F + +H +R H EKP+KC+ CG F
Sbjct: 19 YKCDECGKSFSHSSDLSKH-RRTHTG------------------EKPYKCDECGKAFIQR 59
Query: 701 RQVSGH 706
+ GH
Sbjct: 60 SHLIGH 65
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 769 FACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHM 815
+ C +CGK ++ S L H T G++ P C+ CGK I R+H+
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEK--PYKCDECGKAFIQ-RSHL 62
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 37/54 (68%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
K + C CGK FS + L H+RVHTGEKP+ C CGK+FSQ+S L H+ IHT
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 322 KDLCCDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVH 375
K C CGKAFS + L H++ H+G+KPY C CGK+F+QN+ L +H +H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGL-INHQRIH 65
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSD 175
EKP+ C CGK+FS+ S L H+ +HT + Y+C C K F +NS L +H + H+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEK-PYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 62 EKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHT 117
EK + C ECGK F SS L +H++ VH K + C CGK FS + L H+R+HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
+P+ C CG F +SS L+QH+ +HTGE+ + C CG+ F+Q + H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 151 YECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTN 191
Y C C K F R+S L H + H+ +PY+C C +F N
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQN 55
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 613 ACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHIN 666
C +CG+ F + L H+R VH+ E Y+C CGK F + H +RIH +
Sbjct: 16 GCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINH-QRIHTS 67
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 383 FQCSQCPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTD 436
+ C +C K F R+S L H ++HT E+ C C +F ++ + H+R +HT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR-IHTS 67
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 52 LKNHVRIHTKEKLFICEECGKQFVTSSALRRHKK 85
L H R+HT EK + C ECGK F +S L H++
Sbjct: 30 LVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 30/85 (35%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPEVR 825
E P+ C +CGK +++ S L H G+ +
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGE------------------------------K 41
Query: 826 PHMCDLCGARFKKSSALLQHRPIHT 850
P+ C CG F ++S L+ H+ IHT
Sbjct: 42 PYKCLECGKAFSQNSGLINHQRIHT 66
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQL 304
Y C C R L H ++HTGEK C +CGK
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAF 52
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 408 ERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHLKRHSK 460
E+ C C +F + + +H+R VHT E+P+ C C F ++ L H +
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 292 EKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAAHKKTHS 347
EK C +CGK +H + VH K C CGKAFS + L H++ H+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 177 RPYECDICNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQHGKTHNT 232
+PY C C +F + +H+ VH+ +PY+C C +F + L H + H +
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQ-RVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 19/70 (27%)
Query: 638 ENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFKCNLCGTGF 697
E Y C CGK F + +H +R+H EKP+KC CG F
Sbjct: 12 EKPYGCVECGKAFSRSSILVQH-QRVHTG------------------EKPYKCLECGKAF 52
Query: 698 ESDRQVSGHR 707
+ + H+
Sbjct: 53 SQNSGLINHQ 62
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 81/165 (49%), Gaps = 12/165 (7%)
Query: 50 YSLKNHVRIHTKEKLFICEE--CGKQFVTSSALRRHKKAVHLKIKDHSCDV--CGKVFSC 105
+ L+ H+ HT EK F C+E C K F + L RH H K+ +CD C F+
Sbjct: 28 WKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHS-LTHTGEKNFTCDSDGCDLRFTT 86
Query: 106 PTNLTVH-KRVHTGEK-PFVC--ESCGKSFSQHSSLFIHKMIHTQRQYRYECSH--CQKK 159
N+ H R H + +VC E+CGK+F +H+ L +H+ HTQ Q YEC H C K+
Sbjct: 87 KANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ-QLPYECPHEGCDKR 145
Query: 160 FFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSE 204
F S+L H K H+ + D C+ KT KH H +
Sbjct: 146 FSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQD 190
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 12/158 (7%)
Query: 84 KKAVHLKIKDHSCDV--CGKVFSCPTNLTVHKRVHTGEKPFVC--ESCGKSFSQHSSLFI 139
+KA+ + K + C CG ++ L H HTGEKPF C E C K F+ L
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 140 HKMIHT-QRQYRYECSHCQKKFFRNSKLTSHLKTHSDLR--PYECDI--CNASFKTNYER 194
H + HT ++ + + C +F + + H +++ Y C C +FK + +
Sbjct: 63 HSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQL 122
Query: 195 KKHRIYVHSETRPYQC--NLCNASFKRPGHLKQHGKTH 230
K H+ + H++ PY+C C+ F P LK+H K H
Sbjct: 123 KVHQ-FSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 64/145 (44%), Gaps = 18/145 (12%)
Query: 329 CGKAFSCQTNLAAHKKTHSGDKPYVC--ETCGKSFAQNASLKYHHDTVHAL--VKKRLFQ 384
CG A++ L AH H+G+KP+ C E C K F HH T H+L ++ F
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTS-----LHHLTRHSLTHTGEKNFT 74
Query: 385 CSQ--CPKKFYRNSKLNAHL----KIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDER 438
C C +F + + H I C + C +FK N++K H +F HT +
Sbjct: 75 CDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH-QFSHTQQL 133
Query: 439 PHACQY--CSATFKKSDHLKRHSKT 461
P+ C + C F LKRH K
Sbjct: 134 PYECPHEGCDKRFSLPSRLKRHEKV 158
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 12/110 (10%)
Query: 43 SRQHLSKYSLKNHVRIHTKEKLFICEE--CGKQFVTSSALRRHKKAVH-LKIKDHSC--D 97
S HL+++SL HT EK F C+ C +F T + +++H H +KI + C +
Sbjct: 56 SLHHLTRHSL-----THTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFE 110
Query: 98 VCGKVFSCPTNLTVHKRVHTGEKPFVC--ESCGKSFSQHSSLFIHKMIHT 145
CGK F L VH+ HT + P+ C E C K FS S L H+ +H
Sbjct: 111 NCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 160
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 75/183 (40%), Gaps = 16/183 (8%)
Query: 266 RYQCPM--CQIVLKRKDTLRHHLKLHTGEKFVTC--EQCGKQLHGVYAFKRHLKSVHLKI 321
RY C C + L+ HL HTGEK C E C K ++ RH H
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH-SLTHTGE 70
Query: 322 KDLCCDM--CGKAFSCQTNLAAHKKTHSGDK--PYVC--ETCGKSFAQNASLKYHHDTVH 375
K+ CD C F+ + N+ H K YVC E CGK+F ++ LK H
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQ---F 127
Query: 376 ALVKKRLFQCSQ--CPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFV 433
+ ++ ++C C K+F S+L H K+H D C+ KT KH
Sbjct: 128 SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAEC 187
Query: 434 HTD 436
H D
Sbjct: 188 HQD 190
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 18/164 (10%)
Query: 184 CNASFKTNYERKKHRIYVHSETRPYQC--NLCNASFKRPGHLKQHGKTHNTENKGLLE-- 239
C A++ N++ + H + H+ +P+ C C F HL +H TH E +
Sbjct: 20 CGAAYNKNWKLQAH-LCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 78
Query: 240 --EHVFSCKAKRKENLDSYQITWGVDMVRYQCPM--CQIVLKRKDTLRHHLKLHTGEKFV 295
+ F+ KA K++ + + + + Y C C K+ + L+ H HT +
Sbjct: 79 GCDLRFTTKANMKKHFNRFH---NIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPY 135
Query: 296 TC--EQCGKQLHGVYAFKRHLKSVHLKI---KDLCCDMCGKAFS 334
C E C K+ KRH K VH KD C GK ++
Sbjct: 136 ECPHEGCDKRFSLPSRLKRHEK-VHAGYPCKKDDSCSFVGKTWT 178
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 10/94 (10%)
Query: 48 SKYSLKNHV-RIHT-KEKLFIC--EECGKQFVTSSALRRHKKAVHLKIKDHSC--DVCGK 101
+K ++K H R H K +++C E CGK F + L+ H+ + H + + C + C K
Sbjct: 86 TKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFS-HTQQLPYECPHEGCDK 144
Query: 102 VFSCPTNLTVHKRVHTG---EKPFVCESCGKSFS 132
FS P+ L H++VH G +K C GK+++
Sbjct: 145 RFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWT 178
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 40/111 (36%), Gaps = 31/111 (27%)
Query: 774 CGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPEVRPHMCDLCG 833
CG YNK L HL G++ P E C K ++ +
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHH-------------------- 59
Query: 834 ARFKKSSALLQHRPIHTGERHIC---PVCGRGFTQRGAMKKHVSTLHHLVL 881
L +H HTGE++ C FT + MKKH + H++ +
Sbjct: 60 --------LTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKI 102
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 46/100 (46%), Gaps = 29/100 (29%)
Query: 48 SKYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPT 107
+KY L NH+R+HT EK F C G CGK+F+
Sbjct: 74 AKYKLVNHIRVHTGEKPFPCPFPG---------------------------CGKIFARSE 106
Query: 108 NLTVHKRVHTGEKPFVC--ESCGKSFSQHSSLFIHKMIHT 145
NL +HKR HTGEKPF C E C + F+ S H +HT
Sbjct: 107 NLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 63/149 (42%), Gaps = 42/149 (28%)
Query: 70 CGKQFVTSSALRRHKKAVHLKIKDHSCDVC--------GKVFSCPTNLTVHKRVHTGEKP 121
C + F T L H H+ + + VC GK F L H RVHTGEKP
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 122 FVCE--SCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSDLRPY 179
F C CGK F++ +L IHK +TH+ +P+
Sbjct: 91 FPCPFPGCGKIFARSENLKIHK-----------------------------RTHTGEKPF 121
Query: 180 ECDI--CNASFKTNYERKKHRIYVHSETR 206
+C+ C+ F + +RKKH ++VH+ +
Sbjct: 122 KCEFEGCDRRFANSSDRKKH-MHVHTSDK 149
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 294 FVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDM--CGKAFSCQTNLAAHKKTHSGDKP 351
+ C + GK Y H++ VH K C CGK F+ NL HK+TH+G+KP
Sbjct: 62 WEECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKP 120
Query: 352 YVC--ETCGKSFAQNASLKYH 370
+ C E C + FA ++ K H
Sbjct: 121 FKCEFEGCDRRFANSSDRKKH 141
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 32/115 (27%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQC 385
C GK+F + L H + H+G+KP+ C G
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPG--------------------------- 97
Query: 386 SQCPKKFYRNSKLNAHLKIHTEERACFCDI--CNHSFKTDNEVKKHKRFVHTDER 438
C K F R+ L H + HT E+ C+ C+ F ++ KKH VHT ++
Sbjct: 98 --CGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMH-VHTSDK 149
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 771 CPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPEVRPHMCD 830
CP+ GK + K L H+ G++ P CGK N + +P C+
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Query: 831 L--CGARFKKSSALLQHRPIHTGER 853
C RF SS +H +HT ++
Sbjct: 125 FEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 761 KINGDEPPFACP--QCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQV 818
+++ E PF CP CGK++ + +L +H T G++ E C + N + + +
Sbjct: 83 RVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142
Query: 819 HLY 821
H++
Sbjct: 143 HVH 145
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 13/146 (8%)
Query: 97 DVCGKVFSCPTNLTVH---KRVHTGEKPFVCESCG-----KSFSQHSSLFIHKMIHT-QR 147
D C + F L H + +H K FVC G + F L +H HT ++
Sbjct: 7 DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEK 66
Query: 148 QYRYECSHCQKKFFRNSKLTSHLKTHSDLRPYEC--DICNASFKTNYERKKHRIYVHSET 205
++ C+K + R L +HL++H+ +PY C + C+ +F +R KH+ HS
Sbjct: 67 PHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNE 126
Query: 206 RPYQCNL--CNASFKRPGHLKQHGKT 229
+PY C L C + P L++H KT
Sbjct: 127 KPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 59/134 (44%), Gaps = 20/134 (14%)
Query: 54 NHVRIHTKEKLFICEECG---------KQFVTSSALRRHKKAVHLKIKDHSC--DVCGKV 102
N IH + K F+C G Q++ +RRH K H C + C K
Sbjct: 24 NSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE-----KPHKCTFEGCRKS 78
Query: 103 FSCPTNLTVHKRVHTGEKPFVC--ESCGKSFSQHSSLFIHKMIHTQRQYRYECS--HCQK 158
+S NL H R HTGEKP++C E C K+FS S H+ + Y C C K
Sbjct: 79 YSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTK 138
Query: 159 KFFRNSKLTSHLKT 172
++ S L H+KT
Sbjct: 139 RYTDPSSLRKHVKT 152
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 38/156 (24%)
Query: 317 VHLKIKDLCCDMCG-----KAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+H + K+ C G + F Q L H + H+G+KP+ C G
Sbjct: 28 IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEG------------- 74
Query: 372 DTVHALVKKRLFQCSQCPKKFYRNSKLNAHLKIHTEERACFCD--ICNHSFKTDNEVKKH 429
C K + R L HL+ HT E+ C+ C+ +F ++ KH
Sbjct: 75 ----------------CRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKH 118
Query: 430 KRFVHTDERPHACQY--CSATFKKSDHLKRHSKTAH 463
+ H++E+P+ C+ C+ + L++H KT H
Sbjct: 119 QNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 11/127 (8%)
Query: 762 INGDEPPFACPQCG-----KLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMR 816
I+G+ F C G + + + L +H+ G++ E C K + N
Sbjct: 28 IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKT 87
Query: 817 QVHLYPEVRPHMCD--LCGARFKKSSALLQHRP-IHTGER-HIC--PVCGRGFTQRGAMK 870
+ + +P+MC+ C F +S +H+ H+ E+ ++C P C + +T +++
Sbjct: 88 HLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLR 147
Query: 871 KHVSTLH 877
KHV T+H
Sbjct: 148 KHVKTVH 154
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 597 KEHGQTTSGTRRFQLCACTDCGRMFYNNGALGIHRRAVHSQENTYQCD--PCGKVFPSKK 654
K H ++ +G + + +C C + F N H+ HS E Y C C K +
Sbjct: 86 KTHLRSHTGEKPY-MCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPS 144
Query: 655 YMREHIKRIH 664
+R+H+K +H
Sbjct: 145 SLRKHVKTVH 154
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 53 KNHVRIHTKEKLFICE--ECGKQFVTSSALRRHKKAVH 88
K+ R H+ EK ++C+ C K++ S+LR+H K VH
Sbjct: 117 KHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 324 LCCDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLF 383
+ C++CGK F +L HK +HSG+KPY C CG F + + YH + V K +
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK-PY 66
Query: 384 QCSQCPKKFYRNSKLNAHLK 403
C C K F R LN H+K
Sbjct: 67 ICQSCGKGFSRPDHLNGHIK 86
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 290 TGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAAHKKTHSG- 348
+G V CE CGK VY RH K H K C +CG F + ++ H ++H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 349 -DKPYVCETCGKSFAQNASLKYHHDTVHA 376
KPY+C++CGK F++ L H VH+
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 67 CEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGE--KPFVC 124
CE CGK F L RHK + H K +SC VCG F ++ H R H G KP++C
Sbjct: 10 CEICGKIFRDVYHLNRHKLS-HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 125 ESCGKSFSQHSSLFIH-KMIHT 145
+SCGK FS+ L H K +H+
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVHS 90
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 95 SCDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYR-YEC 153
+C++CGK+F +L HK H+GEKP+ C CG F + + H H + Y C
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 154 SHCQKKFFRNSKLTSHLK 171
C K F R L H+K
Sbjct: 69 QSCGKGFSRPDHLNGHIK 86
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 153 CSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
C C K F L H +HS +PY C +C FK H R + S +PY C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 212 LCNASFKRPGHLKQH 226
C F RP HL H
Sbjct: 70 SCGKGFSRPDHLNGH 84
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 796 SEPTVCEACGKHVINIRNHMRQVHLYPEVRPHMCDLCGARFKKSSALLQHRPIH---TGE 852
S CE CGK ++ + R + +P+ C +CG RFK+ + H H G+
Sbjct: 5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 64
Query: 853 RHICPVCGRGFTQRGAMKKHVSTLH 877
+IC CG+GF++ + H+ +H
Sbjct: 65 PYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVI---NIRNHMRQVHLYP 822
E P++CP CG + +K + H+ + G +P +C++CGK ++ H++QVH P
Sbjct: 33 EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGP 92
Query: 823 E 823
Sbjct: 93 S 93
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 385 CSQCPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKR-FVHTDERPHACQ 443
C C K F LN H H+ E+ C +C FK + + H R + +P+ CQ
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 444 YCSATFKKSDHLKRHSKTAH 463
C F + DHL H K H
Sbjct: 70 SCGKGFSRPDHLNGHIKQVH 89
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGE--KFVTCEQCGKQLHGVYAFKRHLKSVH 318
Y CP+C + KRKD + +H++ H G K C+ CGK H+K VH
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 18/94 (19%)
Query: 613 ACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRK 672
AC CG++F + L H+ + HS E Y C CG F K M H++ + G V
Sbjct: 9 ACEICGKIFRDVYHLNRHKLS-HSGEKPYSCPVCGLRFKRKDRMSYHVRS---HDGSV-- 62
Query: 673 QREPRPPAKPDSEKPFKCNLCGTGFESDRQVSGH 706
KP+ C CG GF ++GH
Sbjct: 63 ------------GKPYICQSCGKGFSRPDHLNGH 84
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 571 SNPNRFDCCFCSEIFNLKKDYHEHLKKEHGQTTSGTRRFQLCACTDCGRMFYNNGALGIH 630
S + C C +IF +D + HL + H + SG + + +C CG F + H
Sbjct: 3 SGSSGVACEICGKIF---RDVY-HLNR-HKLSHSGEKPY---SCPVCGLRFKRKDRMSYH 54
Query: 631 RRA-VHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
R+ S Y C CGK F ++ HIK++H
Sbjct: 55 VRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQC 385
C++CGK FS + L H + H+G KPY C+TC + A ++SL H + +R F+C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH---LRIHSDERPFKC 67
Query: 386 SQCPKKFYRNSKLNAHLKIHTEERA 410
CP +S+L HL+ HT +
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDSG 92
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 94 HSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYEC 153
H C+VCGK FS L H R HTG KP+ C++C + + SSL H IH+ + ++C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDER-PFKC 67
Query: 154 SHCQKKFFRNSKLTSHLKTHS 174
C +S+LT HL++H+
Sbjct: 68 QICPYASRNSSQLTVHLRSHT 88
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 151 YECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSETRPYQC 210
++C C K F R KL +H++ H+ ++PY+C C+ + + KH + +HS+ RP++C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH-LRIHSDERPFKC 67
Query: 211 NLCNASFKRPGHLKQHGKTHNTEN 234
+C + + L H ++H ++
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDS 91
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 121 PFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSDLRPYE 180
P CE CGK FS+ L H HT + Y+C C +S L HL+ HSD RP++
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVK-PYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Query: 181 CDIC 184
C IC
Sbjct: 67 CQIC 70
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 384 QCSQCPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQ 443
+C C K F R KL H++ HT + C C+++ + + KH R +H+DERP CQ
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKCQ 68
Query: 444 YCSATFKKSDHLKRH 458
C + S L H
Sbjct: 69 ICPYASRNSSQLTVH 83
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 67 CEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCES 126
CE CGK F L+ H + H +K + C C + ++L H R+H+ E+PF C+
Sbjct: 11 CEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 127 CGKSFSQHSSLFIHKMIHT 145
C + S L +H HT
Sbjct: 70 CPYASRNSSQLTVHLRSHT 88
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCC 326
++C +C RKD L+ H++ HTG K C+ C + +HL+ +H + C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKC 67
Query: 327 DMCGKAFSCQTNLAAHKKTHSGD 349
+C A + L H ++H+GD
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGD 90
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 49 KYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTN 108
K LK H+R HT K + C+ C SS+L +H + +H + C +C +
Sbjct: 21 KDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKCQICPYASRNSSQ 79
Query: 109 LTVHKRVHTGE 119
LTVH R HTG+
Sbjct: 80 LTVHLRSHTGD 90
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 763 NGDEPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYP 822
+G P C CGK +++K L H+ G + P C+ C + + + + ++
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVK--PYKCKTCDYAAADSSSLNKHLRIHS 60
Query: 823 EVRPHMCDLCGARFKKSSALLQHRPIHTGE 852
+ RP C +C + SS L H HTG+
Sbjct: 61 DERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 796 SEPTVCEACGK---HVINIRNHMRQVHLYPEVRPHMCDLCGARFKKSSALLQHRPIHTGE 852
S P CE CGK ++ HMR + V+P+ C C SS+L +H IH+ E
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTHMR---CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 853 R----HICPVCGRGFTQ 865
R ICP R +Q
Sbjct: 63 RPFKCQICPYASRNSSQ 79
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 297 CEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
CE CGK K H++ H +K C C A + ++L H + HS ++P+ C+
Sbjct: 11 CEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 357 CGKSFAQNASLKYH 370
C + ++ L H
Sbjct: 70 CPYASRNSSQLTVH 83
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 11/90 (12%)
Query: 207 PYQCNLCNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITWGV---- 262
P++C +C F R LK H + H + CK DS + +
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKP-------YKCKTCDYAAADSSSLNKHLRIHS 60
Query: 263 DMVRYQCPMCQIVLKRKDTLRHHLKLHTGE 292
D ++C +C + L HL+ HTG+
Sbjct: 61 DERPFKCQICPYASRNSSQLTVHLRSHTGD 90
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 60 TKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGE 119
+ +KL+ C+ CGK F S RH ++HL ++ + C VCGK F +L H ++HTG
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Query: 120 KPFVCESCGKSFSQHSSLFIH 140
KP+ C C K F S H
Sbjct: 64 KPYECNICAKRFMWRDSFHRH 84
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 290 TGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAAHKKTHSGD 349
+G+K C QCGK RH+ S+HL ++ C +CGK F + +L H K H+G
Sbjct: 6 SGDKLYPC-QCGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Query: 350 KPYVCETCGKSFAQNASLKYH 370
KPY C C K F S H
Sbjct: 64 KPYECNICAKRFMWRDSFHRH 84
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 117 TGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSDL 176
+G+K + C+ CGKSF+ S H +H + Y C C KKF L H+K H+ +
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLR-PYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Query: 177 RPYECDICNASF 188
+PYEC+IC F
Sbjct: 64 KPYECNICAKRF 75
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 151 YECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSETRPYQC 210
Y C C K F S+ H+ H LRPY C +C FK + H + +H+ +PY+C
Sbjct: 11 YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH-MKIHTGIKPYEC 68
Query: 211 NLCNASF 217
N+C F
Sbjct: 69 NICAKRF 75
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 804 CGKHVINIRNHMRQVHLYPEVRPHMCDLCGARFKKSSALLQHRPIHTGER-HICPVCGRG 862
CGK + R + ++ +RP+ C +CG +FK L+ H IHTG + + C +C +
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 863 FTQRGAMKKHVSTLHHLVLPNKSDEPPTQLYGGEEG 898
F R + +HV++ K+++ T+ G G
Sbjct: 75 FMWRDSFHRHVTSCTKSYEAAKAEQNTTEASGPSSG 110
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 381 RLFQCSQCPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPH 440
+L+ C QC K F S+ + H+ +H R C +C FK + + H + +HT +P+
Sbjct: 9 KLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPY 66
Query: 441 ACQYCSATFKKSDHLKRHSKTAHKEMYQSEDIDQQT 476
C C+ F D RH + K Y++ +Q T
Sbjct: 67 ECNICAKRFMWRDSFHRHVTSCTKS-YEAAKAEQNT 101
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 347 SGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHLKIHT 406
SGDK Y C+ CGKSF S + H ++H + R + C C KKF L H+KIHT
Sbjct: 6 SGDKLYPCQ-CGKSFTHK-SQRDRHMSMHLGL--RPYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 407 EERACFCDICNHSFKTDNEVKKH 429
+ C+IC F + +H
Sbjct: 62 GIKPYECNICAKRFMWRDSFHRH 84
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 99 CGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQK 158
CGK F+ + H +H G +P+ C CGK F L H IHT + YEC+ C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK-PYECNICAK 73
Query: 159 KFFRNSKLTSHLKT 172
+F H+ +
Sbjct: 74 RFMWRDSFHRHVTS 87
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 773 QCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPEVRPHMCDLC 832
QCGK + KS H+S G R P C CGK + + + ++ ++P+ C++C
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLR--PYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNIC 71
Query: 833 GARFKKSSALLQH 845
RF + +H
Sbjct: 72 AKRFMWRDSFHRH 84
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKS 316
Y C +C K K L H+K+HTG K C C K+ +F RH+ S
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTS 87
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 174 SDLRPYECDICNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQHGKTHN 231
S + Y C C SF +R +H + +H RPY C +C FK HL H K H
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRH-MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVF 103
H+ +H + + C CGK+F L H K +H IK + C++C K F
Sbjct: 28 HMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAKRF 75
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 177 RPYECDICNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+PY+CD C ASF+ H+ VH+ +PY+CN+C A F RP +LK H + H+ E
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
K + CD C F NL HK VHTGEKP+ C CG F++ ++L H IH+
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
CD C +F + NLA+HK H+G+KPY C CG F + A+LK H
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 62 EKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
+K + C+ C F L HK VH K + C++CG F+ P NL H R+H+GEKP
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHK-TVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSDLRP 178
+KP+ C+ C SF +L HK +HT + Y C+ C +F R + L +H + HS +P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEK-PYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 151 YECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSETRP 207
Y+C CQ F L SH H+ +PY C+IC A F K H +HS +P
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH-TRIHSGEKP 73
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 349 DKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHLKIHTEE 408
DKPY C+ C SF +L H TVH ++ ++C+ C +F R + L H +IH+ E
Sbjct: 15 DKPYKCDRCQASFRYKGNLA-SHKTVH--TGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Query: 409 R 409
+
Sbjct: 72 K 72
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 413 CDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHLKRHSK 460
CD C SF+ + HK VHT E+P+ C C A F + +LK H++
Sbjct: 20 CDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPANLKTHTR 66
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKHV 873
+P+ CD C A F+ L H+ +HTGE+ + C +CG F + +K H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT 65
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 383 FQCSQCPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERP 439
++C +C F L +H +HT E+ C+IC F +K H R +H+ E+P
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR-IHSGEKP 73
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 31/85 (36%), Gaps = 29/85 (34%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCC 326
Y+C CQ + K L H +HTGEK C CG Q
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQ----------------------- 54
Query: 327 DMCGKAFSCQTNLAAHKKTHSGDKP 351
F+ NL H + HSG+KP
Sbjct: 55 ------FNRPANLKTHTRIHSGEKP 73
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 31/88 (35%)
Query: 206 RPYQCNLCNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITWGVDMV 265
+PY+C+ C ASF+ G+L H H E
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKP------------------------------ 45
Query: 266 RYQCPMCQIVLKRKDTLRHHLKLHTGEK 293
Y+C +C R L+ H ++H+GEK
Sbjct: 46 -YRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 801 CEACGKHVINIRNHMRQVHLYPEVRPHMCDLCGARFKKSSALLQHRPIHTGER 853
C+A ++ N+ +H + VH +P+ C++CGA+F + + L H IH+GE+
Sbjct: 23 CQASFRYKGNLASH-KTVHT--GEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQ 667
C C F G L H+ VH+ E Y+C+ CG F ++ H RIH +
Sbjct: 20 CDRCQASFRYKGNLASHK-TVHTGEKPYRCNICGAQFNRPANLKTHT-RIHSGE 71
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 90 KIKDHSCDV--CGKVFSCPTNLTVHKRVHTGEKPFVCE--SCGKSFSQHSSLFIHKMIHT 145
+ H+CD CGK ++ ++L H R HTGEKP+ C+ CG F++ L H HT
Sbjct: 3 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 62
Query: 146 QRQYRYECSHCQKKFFRNSKLTSHLKTH 173
+ ++C C + F R+ L H+K H
Sbjct: 63 GHR-PFQCQKCDRAFSRSDHLALHMKRH 89
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
Query: 326 CDM--CGKAFSCQTNLAAHKKTHSGDKPYVCET--CGKSFAQNASLKYHHDTVHALVKKR 381
CD CGK ++ ++L AH +TH+G+KPY C+ CG FA++ L H+ R
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR---KHTGHR 65
Query: 382 LFQCSQCPKKFYRNSKLNAHLKIH 405
FQC +C + F R+ L H+K H
Sbjct: 66 PFQCQKCDRAFSRSDHLALHMKRH 89
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 386 SQCPKKFYRNSKLNAHLKIHTEERACFCDI--CNHSFKTDNEVKKHKRFVHTDERPHACQ 443
+ C K + ++S L AHL+ HT E+ CD C F +E+ +H R HT RP CQ
Sbjct: 12 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHRPFQCQ 70
Query: 444 YCSATFKKSDHLKRHSK 460
C F +SDHL H K
Sbjct: 71 KCDRAFSRSDHLALHMK 87
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 156 CQKKFFRNSKLTSHLKTHSDLRPYECDI--CNASFKTNYERKKHRIYVHSETRPYQCNLC 213
C K + ++S L +HL+TH+ +PY CD C F + E +H H+ RP+QC C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH-YRKHTGHRPFQCQKC 72
Query: 214 NASFKRPGHLKQHGKTH 230
+ +F R HL H K H
Sbjct: 73 DRAFSRSDHLALHMKRH 89
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 70 CGKQFVTSSALRRHKKAVHLKIKDHSCDV--CGKVFSCPTNLTVHKRVHTGEKPFVCESC 127
CGK + SS L+ H + H K + CD CG F+ LT H R HTG +PF C+ C
Sbjct: 14 CGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 72
Query: 128 GKSFSQHSSLFIHKMIH 144
++FS+ L +H H
Sbjct: 73 DRAFSRSDHLALHMKRH 89
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 27/99 (27%)
Query: 272 CQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGK 331
C + L+ HL+ HTGEK C+ D CG
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDW---------------------------DGCGW 46
Query: 332 AFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
F+ L H + H+G +P+ C+ C ++F+++ L H
Sbjct: 47 KFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALH 85
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 793 GKRSEPTVCE--ACGKHVINIRNHMRQVHLYPEVRPHMCDL--CGARFKKSSALLQHRPI 848
G R+ C+ CGK + + + +P+ CD CG +F +S L +H
Sbjct: 1 GSRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 60
Query: 849 HTGERHI-CPVCGRGFTQRGAMKKHV 873
HTG R C C R F++ + H+
Sbjct: 61 HTGHRPFQCQKCDRAFSRSDHLALHM 86
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 156 CQKKFFRNSKLTSHLKTHSDLRPYEC--DICNASFKTNYERKKHRIYVHSETRPYQCNLC 213
C K + ++S L +HL+TH+ +PY+C + C+ F + E +H H+ +P+QC +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRH-YRKHTGAKPFQCGVC 81
Query: 214 NASFKRPGHLKQHGKTH 230
N SF R HL H K H
Sbjct: 82 NRSFSRSDHLALHMKRH 98
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 29/101 (28%)
Query: 90 KIKDHSCDV--CGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQR 147
K + H CD C KV++ ++L H R HTGEKP+ C G
Sbjct: 12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEG------------------- 52
Query: 148 QYRYECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASF 188
C +F R+ +LT H + H+ +P++C +CN SF
Sbjct: 53 --------CDWRFARSDELTRHYRKHTGAKPFQCGVCNRSF 85
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 377 LVKKRLFQCS--QCPKKFYRNSKLNAHLKIHTEERA--CFCDICNHSFKTDNEVKKHKRF 432
L K+R+ C C K + ++S L AHL+ HT E+ C + C+ F +E+ +H R
Sbjct: 10 LEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR- 68
Query: 433 VHTDERPHACQYCSATFKKSDHLKRHSK 460
HT +P C C+ +F +SDHL H K
Sbjct: 69 KHTGAKPFQCGVCNRSFSRSDHLALHMK 96
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 326 CDM--CGKAFSCQTNLAAHKKTHSGDKPYVC--ETCGKSFAQNASLKYHHDTVHALVKKR 381
CD C K ++ ++L AH +TH+G+KPY C E C FA++ L H+ H K
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAKP- 75
Query: 382 LFQCSQCPKKFYRNSKLNAHLKIH 405
FQC C + F R+ L H+K H
Sbjct: 76 -FQCGVCNRSFSRSDHLALHMKRH 98
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 61 KEKLFICE--ECGKQFVTSSALRRHKKAVHLKIKDHSC--DVCGKVFSCPTNLTVHKRVH 116
K ++ C+ C K + SS L+ H + H K + C + C F+ LT H R H
Sbjct: 12 KRRIHYCDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRKH 70
Query: 117 TGEKPFVCESCGKSFSQHSSLFIHKMIH 144
TG KPF C C +SFS+ L +H H
Sbjct: 71 TGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 52 LKNHVRIHTKEKLFIC--EECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNL 109
LK H+R HT EK + C E C +F S L RH + H K C VC + FS +L
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAKPFQCGVCNRSFSRSDHL 91
Query: 110 TVHKRVH 116
+H + H
Sbjct: 92 ALHMKRH 98
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 270 PMCQIVLKRKDTLRHHLKLHTGEKFVTC--EQCGKQLHGVYAFKRHLKSVHLKIKDLCCD 327
P C V + L+ HL+ HTGEK C E C + RH + H K C
Sbjct: 21 PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAKPFQCG 79
Query: 328 MCGKAFSCQTNLAAHKKTH 346
+C ++FS +LA H K H
Sbjct: 80 VCNRSFSRSDHLALHMKRH 98
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 29/78 (37%)
Query: 772 PQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPEVRPHMCDL 831
P C K+Y K S L HL T G++ E C R + +P C +
Sbjct: 21 PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGV 80
Query: 832 CGARFKKSSALLQHRPIH 849
C F +S L H H
Sbjct: 81 CNRSFSRSDHLALHMKRH 98
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
Query: 326 CDM--CGKAFSCQTNLAAHKKTHSGDKPYVCET--CGKSFAQNASLKYHHDTVHALVKKR 381
CD CGK ++ ++L AH +TH+G+KPY C+ CG FA++ L H+ R
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR---KHTGHR 64
Query: 382 LFQCSQCPKKFYRNSKLNAHLKIH 405
FQC +C + F R+ L H+K H
Sbjct: 65 PFQCQKCDRAFSRSDHLALHMKRH 88
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 386 SQCPKKFYRNSKLNAHLKIHTEERACFCDI--CNHSFKTDNEVKKHKRFVHTDERPHACQ 443
+ C K + ++S L AHL+ HT E+ CD C F +E+ +H R HT RP CQ
Sbjct: 11 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHRPFQCQ 69
Query: 444 YCSATFKKSDHLKRHSK 460
C F +SDHL H K
Sbjct: 70 KCDRAFSRSDHLALHMK 86
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 156 CQKKFFRNSKLTSHLKTHSDLRPYECDI--CNASFKTNYERKKHRIYVHSETRPYQCNLC 213
C K + ++S L +HL+TH+ +PY CD C F + E +H H+ RP+QC C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH-YRKHTGHRPFQCQKC 71
Query: 214 NASFKRPGHLKQHGKTH 230
+ +F R HL H K H
Sbjct: 72 DRAFSRSDHLALHMKRH 88
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 29/97 (29%)
Query: 94 HSCDV--CGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRY 151
H+CD CGK ++ ++L H R HTGEKP+ C+ G
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDG----------------------- 42
Query: 152 ECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASF 188
C KF R+ +LT H + H+ RP++C C+ +F
Sbjct: 43 ----CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAF 75
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 70 CGKQFVTSSALRRHKKAVHLKIKDHSCDV--CGKVFSCPTNLTVHKRVHTGEKPFVCESC 127
CGK + SS L+ H + H K + CD CG F+ LT H R HTG +PF C+ C
Sbjct: 13 CGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 71
Query: 128 GKSFSQHSSLFIHKMIH 144
++FS+ L +H H
Sbjct: 72 DRAFSRSDHLALHMKRH 88
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 27/99 (27%)
Query: 272 CQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGK 331
C + L+ HL+ HTGEK C+ D CG
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDW---------------------------DGCGW 45
Query: 332 AFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
F+ L H + H+G +P+ C+ C ++F+++ L H
Sbjct: 46 KFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALH 84
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 794 KRSEPTVCE--ACGKHVINIRNHMRQVHLYPEVRPHMCDL--CGARFKKSSALLQHRPIH 849
KR+ C+ CGK + + + +P+ CD CG +F +S L +H H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 850 TGERHI-CPVCGRGFTQRGAMKKHV 873
TG R C C R F++ + H+
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHM 85
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 321 IKDLCCDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHAL 377
+K C +C + FS +L H +TH+G+KP+ C+ CG+ FA++ K H D H L
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHIL 57
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 151 YECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVH 202
++C C + F R+ LT+H++TH+ +P+ CDIC F + ERK+HR H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 91 IKDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQ 133
+K C +C + FS +LT H R HTGEKPF C+ CG+ F++
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 43
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 383 FQCSQCPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHT 435
FQC C + F R+ L H++ HT E+ CDIC F +E K+H+ H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI 56
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 824 VRPHMCDLCGARFKKSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKHVSTLHHL-VL 881
++P C +C F +S L H HTGE+ C +CGR F + K+H H L +L
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPIL 60
Query: 882 PNKSDEPPTQLY 893
+K +E ++ Y
Sbjct: 61 EDKVEELLSKNY 72
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 264 MVRYQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLK--I 321
M +QC +C R D L H++ HTGEK C+ CG++ KRH H+ +
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPIL 60
Query: 322 KDLCCDMCGKAFSCQTNLAAHKK 344
+D ++ K + + +A KK
Sbjct: 61 EDKVEELLSKNYHLENEVARLKK 83
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 413 CDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHLKRHSKTAH 463
C IC +F + + H R HT E+P AC C F +SD KRH H
Sbjct: 6 CRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 52 LKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHL 89
L H+R HT EK F C+ CG++F S +RH+ H+
Sbjct: 19 LTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI 56
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 176 LRPYECDICNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQH 226
++P++C IC +F + H I H+ +P+ C++C F R K+H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 16/68 (23%)
Query: 797 EPTVCEACGKHVINIRNHMRQVHLYPEVR------PHMCDLCGARFKKSSALLQHRPIHT 850
+P C C +RN R HL +R P CD+CG +F +S +HR I
Sbjct: 2 KPFQCRIC------MRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI-- 53
Query: 851 GERHICPV 858
+HI P+
Sbjct: 54 --QHILPI 59
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 206 RPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+P+QC +C +F R HL H +TH E
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGE 29
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 65 FICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVC 124
+IC C + +V ++LRRH +H K + C C KVF T H+ HTGE+ + C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFN-IHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQC 81
Query: 125 ESCGKSFSQHSSLFIH-KMIHTQ 146
+CGKSF + + H K +H+Q
Sbjct: 82 LACGKSFINYQFMSSHIKSVHSQ 104
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 16/113 (14%)
Query: 539 ADPSQNLFCIKCNASFTSSPAMQSHLKKVHNFSNPNRFDCCFCSEIFNLKKDYHEHLKKE 598
D CI C S+ +++ H +H++ ++ C +C ++F L + + +
Sbjct: 17 VDGRVYYICIVCKRSYVCLTSLRRHFN-IHSWEK--KYPCRYCEKVFPLAE-----YRTK 68
Query: 599 HGQTTSGTRRFQLCACTDCGRMFYNNGALGIHRRAVHSQENT-----YQCDPC 646
H +G RR+Q C CG+ F N + H ++VHSQ+ + Y+ PC
Sbjct: 69 HEIHHTGERRYQ---CLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPC 118
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 284 HHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAAHK 343
H+ + G + C C + + + +RH ++H K C C K F H+
Sbjct: 12 HYELIVDGRVYYICIVCKRSYVCLTSLRRHF-NIHSWEKKYPCRYCEKVFPLAEYRTKHE 70
Query: 344 KTHSGDKPYVCETCGKSFAQNASLKYHHDTVHA 376
H+G++ Y C CGKSF + H +VH+
Sbjct: 71 IHHTGERRYQCLACGKSFINYQFMSSHIKSVHS 103
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 140 HKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRI 199
+++I R Y Y C C++ + + L H HS + Y C C F R KH I
Sbjct: 13 YELIVDGRVY-YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEI 71
Query: 200 YVHSETRPYQCNLCNASFKRPGHLKQHGKTHNTEN 234
+ H+ R YQC C SF + H K+ ++++
Sbjct: 72 H-HTGERRYQCLACGKSFINYQFMSSHIKSVHSQD 105
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 3/104 (2%)
Query: 364 NASLKYHHDTVHALV--KKRLFQCSQCPKKFYRNSKLNAHLKIHTEERACFCDICNHSFK 421
N +K HD + L+ + + C C + + + L H IH+ E+ C C F
Sbjct: 2 NKRMKVKHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFP 61
Query: 422 TDNEVKKHKRFVHTDERPHACQYCSATFKKSDHLKRHSKTAHKE 465
KH+ HT ER + C C +F + H K+ H +
Sbjct: 62 LAEYRTKHE-IHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQ 104
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 118 GEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSDLR 177
G ++C C +S+ +SL H IH+ + +Y C +C+K F T H H+ R
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEK-KYPCRYCEKVFPLAEYRTKHEIHHTGER 77
Query: 178 PYECDICNASFKTNYE 193
Y+C C SF NY+
Sbjct: 78 RYQCLACGKSF-INYQ 92
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 800 VCEACGKHVINIRNHMRQVHLYPEVRPHMCDLCGARFKKSSALLQHRPIHTGER-HICPV 858
+C C + + + + R +++ + + C C F + +H HTGER + C
Sbjct: 24 ICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLA 83
Query: 859 CGRGFTQRGAMKKHVSTLH 877
CG+ F M H+ ++H
Sbjct: 84 CGKSFINYQFMSSHIKSVH 102
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 348 GDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHLKIHTE 407
G Y+C C +S+ SL+ H + +H+ KK + C C K F H HT
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFN-IHSWEKK--YPCRYCEKVFPLAEYRTKHEIHHTG 75
Query: 408 ERACFCDICNHSFKTDNEVKKHKRFVHTDE 437
ER C C SF + H + VH+ +
Sbjct: 76 ERRYQCLACGKSFINYQFMSSHIKSVHSQD 105
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 635 HSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
H+ E YQC CGK F + ++M HIK +H
Sbjct: 73 HTGERRYQCLACGKSFINYQFMSSHIKSVH 102
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 23/53 (43%)
Query: 266 RYQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVH 318
+Y C C+ V + H HTGE+ C CGK H+KSVH
Sbjct: 50 KYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVH 102
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 47 LSKYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVH 88
L++Y K+ + HT E+ + C CGK F+ + H K+VH
Sbjct: 62 LAEYRTKHEIH-HTGERRYQCLACGKSFINYQFMSSHIKSVH 102
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 20/93 (21%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQ 673
C C R + +L H +HS E Y C C KVFP +Y +H IH
Sbjct: 25 CIVCKRSYVCLTSLRRHFN-IHSWEKKYPCRYCEKVFPLAEYRTKH--EIH--------- 72
Query: 674 REPRPPAKPDSEKPFKCNLCGTGFESDRQVSGH 706
E+ ++C CG F + + +S H
Sbjct: 73 --------HTGERRYQCLACGKSFINYQFMSSH 97
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVH 375
C CGK F L H +TH+G+KPY CE C + AQ SL+YH + H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 96 CDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIH 140
C CGK F L +H R HTGEKP+ CE C + +Q +SL H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 152 ECSHCQKKFFRNSKLTSHLKTHSDLRPYECDIC 184
ECS+C K F N L HL+TH+ +PY+C+ C
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFC 38
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
C+ CG+ F +N L IH R H+ E Y+C+ C K +R H++R H
Sbjct: 7 CSYCGKFFRSNYYLNIHLR-THTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 384 QCSQCPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKH 429
+CS C K F N LN HL+ HT E+ C+ C ++ ++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 413 CDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHLKRHSKTAHK 464
C C F+++ + H R HT E+P+ C++C + L+ H + HK
Sbjct: 7 CSYCGKFFRSNYYLNIHLR-THTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 90 KIKDHSCDV--CGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
K++ ++C V C + FS LT H R+HTG+KPF C C ++FS+ L H HT
Sbjct: 16 KMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 176 LRPYECDI--CNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+RPY C + C+ F + E +H I +H+ +P+QC +C +F R HL H +TH
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 120 KPFVC--ESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHS 174
+P+ C ESC + FS+ L H IHT Q ++C C + F R+ LT+H++TH+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTG-QKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 410 ACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
AC + C+ F +E+ +H R +HT ++P C+ C F +SDHL H +T
Sbjct: 21 ACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 819 HLYPEVRPHMCDL--CGARFKKSSALLQHRPIHTGERHI-CPVCGRGFTQRGAMKKHVST 875
++ P++RP+ C + C RF +S L +H IHTG++ C +C R F++ + H+ T
Sbjct: 12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 138 FIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASF 188
++ ++ R Y C ++F R+ +LT H++ H+ +P++C IC +F
Sbjct: 9 LLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 314 LKSVHLKIKDLCCDM--CGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
L V K++ C + C + FS L H + H+G KP+ C C ++F+++ L H
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 375 HALVKKRLFQC--SQCPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKR 431
+ + K R + C C ++F R+ +L H++IHT ++ C IC +F + + H R
Sbjct: 12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 41 PHSRQHLSKYSLKNHVRIHTKEKLFIC--EECGKQFVTSSALRRHKKAVHLKIKDHSCDV 98
PH +L Y + K + + C E C ++F S L RH + +H K C +
Sbjct: 3 PHPMNNLLNYVVP-------KMRPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRI 54
Query: 99 CGKVFSCPTNLTVHKRVHT 117
C + FS +LT H R HT
Sbjct: 55 CMRNFSRSDHLTTHIRTHT 73
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 252 NLDSYQITWGVDMVRYQCPM--CQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYA 309
NL +Y + M Y CP+ C R D L H+++HTG+K C C +
Sbjct: 8 NLLNYVVP---KMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDH 64
Query: 310 FKRHLKS 316
H+++
Sbjct: 65 LTTHIRT 71
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 122 FVC--ESCGKSFSQHSSLFIHKMIHTQRQYRYECSH--CQKKFFRNSKLTSHLKTHSDLR 177
+VC E+CGK+F +H+ L +H+ HTQ Q YEC H C K+F S+L H K H+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQ-QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 178 PYECDICNASFKTNYERKKHRIYVHSE 204
+ D C+ KT KH H +
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVAECHQD 87
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 329 CGKAFSCQTNLAAHKKTHSGDKPYVC--ETCGKSFAQNASLKYHHDTVHA 376
CGKAF L H+ +H+ PY C E C K F+ + LK H+ VHA
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLK-RHEKVHA 57
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 99 CGKVFSCPTNLTVHKRVHTGEKPFVC--ESCGKSFSQHSSLFIHKMIHT 145
CGK F L VH+ HT + P+ C E C K FS S L H+ +H
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 184 CNASFKTNYERKKHRIYVHSETRPYQC--NLCNASFKRPGHLKQHGKTH 230
C +FK + + K H+ + H++ PY+C C+ F P LK+H K H
Sbjct: 9 CGKAFKKHNQLKVHQ-FSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 52 LKNHVRIHTKEKLFIC--EECGKQFVTSSALRRHKKAVHLKI---KDHSCDVCGKVFS 104
LK H HT++ + C E C K+F S L+RH+K VH KD SC GK ++
Sbjct: 19 LKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYPCKKDDSCSFVGKTWT 75
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 150 RYECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKH 197
+Y C C + + S L H++TH+D+RPY C CN SFKT KH
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 179 YECDICNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQHGKT 229
Y C+ C K KKH I H++ RPY C CN SFK G+L +H K+
Sbjct: 2 YICEECGIRXKKPSMLKKH-IRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 412 FCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
C+ C K + +KKH R HTD RP+ C YC+ +FK +L +H K+
Sbjct: 3 ICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 383 FQCSQCPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKH 429
+ C +C + + S L H++ HT+ R C CN SFKT + KH
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 827 HMCDLCGARFKKSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKHVSTLHH 878
++C+ CG R KK S L +H HT R + C C F +G + KH+ + H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 65 FICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVH 112
+ICEECG + S L++H + H ++ + C C F NLT H
Sbjct: 2 YICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 96 CDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIH 140
C+ CG P+ L H R HT +P+ C C SF +L H
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 122 FVC--ESCGKSFSQHSSLFIHKMIHTQRQYRYECSH--CQKKFFRNSKLTSHLKTHSDLR 177
+VC E+CGK+F +H+ L +H+ HTQ Q YEC H C K+F S+L H K H+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQ-QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 178 PYECDICNASFKT 190
+ D C+ KT
Sbjct: 61 CKKDDSCSFVGKT 73
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 329 CGKAFSCQTNLAAHKKTHSGDKPYVC--ETCGKSFAQNASLKYHHDTVHA 376
CGKAF L H+ +H+ PY C E C K F+ + LK H+ VHA
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLK-RHEKVHA 57
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 99 CGKVFSCPTNLTVHKRVHTGEKPFVC--ESCGKSFSQHSSLFIHKMIHT 145
CGK F L VH+ HT + P+ C E C K FS S L H+ +H
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 184 CNASFKTNYERKKHRIYVHSETRPYQC--NLCNASFKRPGHLKQHGKTH 230
C +FK + + K H+ + H++ PY+C C+ F P LK+H K H
Sbjct: 9 CGKAFKKHNQLKVHQ-FSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 117 TGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
+GEKP+VC+ CGK+F+Q S L IH+ +HT
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHT 34
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 347 SGDKPYVCETCGKSFAQNASLKYH 370
SG+KPYVC+ CGK+F Q++ L H
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIH 29
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGE 852
+P++C CG F +SS L HR +HTGE
Sbjct: 9 KPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGE 119
K + C CGK F+ + L++H+RVHTGE
Sbjct: 9 KPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 60 TKEKLFICEECGKQFVTSSALRRHKK 85
+ EK ++C+ECGK F SS L H++
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRR 31
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 62 EKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVH 116
E+ F C CGK + +S L RH++A HL + SC CGK F + + H +VH
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRA-HLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 96 CDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQR 147
C+ CGK + + L+ H+R H G +P C CGK F S + H +H +
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKHV 873
RP C+ CG ++ +S L +HR H G R CP CG+ F + + +H+
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHL 52
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSD 175
E+PF C CGK++ S L H+ H + R C C K F S++ HLK H +
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPR-SCPECGKCFRDQSEVNRHLKVHQN 57
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
C+ CGK + + L+ H++ H G +P C CGK F + + H
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRH 51
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 349 DKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHLKIHTEE 408
++P+ C CGK++ + L H A + R C +C K F S++N HLK+H +
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHR---RAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
Query: 409 RA 410
A
Sbjct: 59 PA 60
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 408 ERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
ER FC+ C +++ + + +H+R H RP +C C F+ + RH K
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRR-AHLGYRPRSCPECGKCFRDQSEVNRHLKV 54
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 292 EKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAAHKKTHSGDKP 351
E+ C CGK RH + HL + C CGK F Q+ + H K H +KP
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRH-RRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ-NKP 59
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGK 806
E PF C CGK Y S L H G R P C CGK
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYR--PRSCPECGK 40
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQ 667
C CG+ + + L HRRA H C CGK F + + H+K +H N+
Sbjct: 7 CNFCGKTYRDASGLSRHRRA-HLGYRPRSCPECGKCFRDQSEVNRHLK-VHQNK 58
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 323 DLCCDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHA 376
C++C +AF+ Q +L H ++H+ +KPY C C ++F + L H +H+
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 413 CDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHLKRHSKTAH 463
C++C +F +K+H R HT+E+P+ C C+ F + D L RH++ H
Sbjct: 5 CEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 96 CDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIH 140
C+VC + F+ +L H R HT EKP+ C C ++F++ L H
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 151 YECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHS 203
+ C C + F R L H ++H++ +PY C +CN +F +H +HS
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 36.2 bits (82), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 179 YECDICNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQHGKTHNTENKG 236
+ C++C +F K+H H+ +PY C LCN +F R L +H + ++ N G
Sbjct: 3 FVCEVCTRAFARQEHLKRH-YRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLG 59
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 383 FQCSQCPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHT 435
F C C + F R L H + HT E+ C +CN +F + + +H + +H+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 828 MCDLCGARFKKSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKHVSTLH 877
+C++C F + L +H HT E+ + C +C R FT+R + +H +H
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 65 FICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVH-KRVHTG 118
F+CE C + F L+RH ++ H K + C +C + F+ L H +++H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 52 LKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVH 88
LK H R HT EK + C C + F L RH + +H
Sbjct: 18 LKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 122 FVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHL-KTHS 174
FVCE C ++F++ L H HT + Y C C + F R L H K HS
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK-PYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 613 ACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
C C R F L H R+ H+ E Y C C + F + + H ++IH
Sbjct: 4 VCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 352 YVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHL-KIHT 406
+VCE C ++FA+ LK H+ + ++ + C C + F R L H KIH+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS---HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 117 TGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
+GEKP+ C+ CGKSFSQ SL +H+ +HT
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHT 34
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 347 SGDKPYVCETCGKSFAQNASLKYH 370
SG+KPY C+ CGKSF+Q SL H
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVH 29
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C CGK FS +L VH+R+HTG P
Sbjct: 9 KPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C CGK+FS + +LA H++ H+G P
Sbjct: 13 CKECGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 114 RVHTGEKPFVCESCGKSFSQHSSLFIHKMI-HTQRQYRYECSHCQKKFFRNSKLTSHL-K 171
R H+GEKP+ C C F+Q ++ +H + HT+ ++ C HC R S L HL K
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 172 THSDLRP 178
HS P
Sbjct: 68 QHSYSGP 74
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 344 KTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHLK 403
+THSG+KPY C C F Q+ ++K H H + F C C R S L HL+
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAK-FHCPHCDTVIARKSDLGVHLR 66
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 29/87 (33%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITW 260
HS +PY+C +C+A F + G +K H +L++H EN+
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMH----------ILQKHT--------ENV------- 43
Query: 261 GVDMVRYQCPMCQIVLKRKDTLRHHLK 287
++ CP C V+ RK L HL+
Sbjct: 44 ----AKFHCPHCDTVIARKSDLGVHLR 66
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 547 CIKCNASFTSSPAMQSHLKKVHNFSNPNRFDCCFCSEIFNLKKDYHEHLKKEH 599
C C+A FT S M+ H+ + H N +F C C + K D HL+K+H
Sbjct: 18 CYICHARFTQSGTMKMHILQKHT-ENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 171 KTHSDLRPYECDICNASFKTNYERKKHRIYVHSE-TRPYQCNLCNASFKRPGHLKQH 226
+THS +PYEC IC+A F + K H + H+E + C C+ R L H
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 96 CDVCGKVFSCPTNLTVHKRVHTGEKP 121
CDVCGK FS ++L H+RVHTGEKP
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
CD+CGK FS ++L H++ H+G+KP
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 829 CDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
CD+CG F +SS L H+ +HTGE+ P G
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKPSGPSSG 46
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EK + C+ CGK FSQ S L H+ +HT
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHT 36
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 117 TGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
T EKPF C++C KSF Q S+L H+MIHT
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHT 36
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P CD C F++ SAL HR IHTGE+ P G
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEKPSGPSSG 46
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 96 CDVCGKVFSCPTNLTVHKRVHTGEKP 121
CD C K F + L H+ +HTGEKP
Sbjct: 15 CDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 378 VKKRLFQCSQCPKKFYRNSKLNAHLKIHTEER 409
++ F+C C K F + S LN+H IHT E+
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEK 39
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 406 TEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHA 441
T E+ CD C+ SF+ + + H R +HT E+P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSH-RMIHTGEKPSG 42
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 90 KIKDHSCD--VCGKVFSCPTNLTVHKRVHTGEKPFVC--ESCGKSFSQHSSLFIHKMIH 144
+I+ H C CGK + ++L H R HTGEKPF C + C + F++ L H+ H
Sbjct: 14 RIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 329 CGKAFSCQTNLAAHKKTHSGDKPYVC--ETCGKSFAQNASLKYHHDT 373
CGK + ++L AH +TH+G+KP+ C + C + FA++ L H T
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 142 MIHTQRQYRYECSH--CQKKFFRNSKLTSHLKTHSDLRPYECDI--CNASFKTNYERKKH 197
I + R + CSH C K +F++S L +H +TH+ +P+ C C F + E +H
Sbjct: 9 QIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
Query: 198 R 198
R
Sbjct: 69 R 69
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 388 CPKKFYRNSKLNAHLKIHTEER--ACFCDICNHSFKTDNEVKKHKR 431
C K ++++S L AH + HT E+ +C C F +E+ +H+R
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 416 CNHSFKTDNEVKKHKRFVHTDERPHACQY--CSATFKKSDHLKRHSKT 461
C ++ + +K H R HT E+P +C + C F +SD L RH +T
Sbjct: 25 CGKTYFKSSHLKAHTR-THTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 52 LKNHVRIHTKEKLFIC--EECGKQFVTSSALRRHKK 85
LK H R HT EK F C + C ++F S L RH++
Sbjct: 35 LKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + CDVC K F ++LTVH+R+HTGEKP
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ CD+C F+ S+L H+ IHTGE+ P G
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG 46
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKP+ C+ C KSF SSL +H+ IHT
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHT 36
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
CD+C K+F ++L H++ H+G+KP
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C CGK F+ NLT H+R+HTGEKP
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKP+ C CGK+F+Q ++L H+ IHT
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHT 36
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C CG F + + L QH+ IHTGE+ P G
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSSG 46
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C CGKAF+ + NL H++ H+G+KP
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 349 DKPYVCETCGKSFAQNASLKYHH 371
+KPY C CGK+FAQ A+L H
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQ 32
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 117 TGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
+GEKP+VC CGK+F+ S L +H+ IHT
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHT 34
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 347 SGDKPYVCETCGKSFAQNASLKYHHDTVHALV 378
SG+KPYVC CGK+F + L H +H V
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQG-IHTGV 36
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTG 851
+P++C CG F S L+ H+ IHTG
Sbjct: 9 KPYVCSDCGKAFTFKSQLIVHQGIHTG 35
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
RPH C+ CG F +S+ L+QH+ IHTGE+ P G
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG 46
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
+ H C+ CGK F +L H+R+HTGEKP
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
E+P C CGKSF Q + L H+ IHT
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHT 36
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 206 RPYQCNLCNASFKRPGHLKQHGKTHNTE 233
RP++CN C SF + HL QH + H E
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGE 38
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C+ CGK+F +L H++ H+G+KP
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 117 TGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
+G+KP+VC CGK+F S L IH+ IHT
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHT 34
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGE 119
K + C+ CGK F + L +H+R+HTGE
Sbjct: 9 KPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGE 852
+P++C+ CG F S L+ H IHTGE
Sbjct: 9 KPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 347 SGDKPYVCETCGKSFAQNASLKYH 370
SG KPYVC CGK+F + L H
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIH 29
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 322 KDLCCDMCGKAFSCQTNLAAHKKTHSGD 349
K C+ CGKAF ++ L H++ H+G+
Sbjct: 9 KPYVCNECGKAFGLKSQLIIHERIHTGE 36
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 91 IKDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
+K + C+ CGK FS ++LT H+ +HTGEKP
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 824 VRPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
V+P+MC+ CG F S+L H+ IHTGE+ P G
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG 46
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 120 KPFVCESCGKSFSQHSSLFIHKMIHTQRQ 148
KP++C CGK+FS +SSL H++IHT +
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEK 39
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 321 IKDLCCDMCGKAFSCQTNLAAHKKTHSGDKP 351
+K C+ CGKAFS ++L H+ H+G+KP
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVH-ALVKKRLFQCSQCPKKFYRNSKL 398
+ +TH+G+KPY C C K+F Q L H H F CS+C K F R + +
Sbjct: 4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTM 63
Query: 399 NAH 401
H
Sbjct: 64 ARH 66
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 114 RVHTGEKPFVCESCGKSFSQHSSLFIH-KMIHTQR--QYRYECSHCQKKFFRNSKLTSH 169
R HTGEKP+ C C K+F Q L +H K H + CS C K F R + + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 760 GKINGDEPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPT--VCEACGKHVINIRNHM 815
G+ + E P+AC C K + +K L MH H P VC CGK RN M
Sbjct: 7 GRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGK-TFTRRNTM 63
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 287 KLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVH---LKIKDLCCDMCGKAFSCQTNLAAHK 343
+ HTGEK C C K H K H C CGK F+ + +A H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 344 KTHSGDKPYVCETCGKS 360
+G E G S
Sbjct: 68 DNCAGPDGVEGENSGPS 84
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 433 VHTDERPHACQYCSATFKKSDHLKRHSKTAHKEMY 467
HT E+P+AC +C TF++ L H K H +
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNF 43
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 16/87 (18%)
Query: 625 GALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDS 684
G+ G R H+ E Y C C K F K+ + H KR H P P +
Sbjct: 1 GSSGSSGR-THTGEKPYACSHCDKTFRQKQLLDMHFKRYH------------DPNFVPAA 47
Query: 685 EKPFKCNLCGTGFESDRQVSGHRVNCA 711
F C+ CG F ++ H NCA
Sbjct: 48 ---FVCSKCGKTFTRRNTMARHADNCA 71
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + CD CGK F L H+R+HTGEKP
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P++CD CG F S+ L++H+ IHTGE+ P G
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG 46
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 322 KDLCCDMCGKAFSCQTNLAAHKKTHSGDKP 351
K CD CGKAF L H++ H+G+KP
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKP+VC+ CGK+F + L H+ IHT
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHT 36
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 349 DKPYVCETCGKSFAQNASLKYHH 371
+KPYVC+ CGK+F +A L H
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQ 32
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 117 TGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQ 148
+GEKP+ C CGK FS S L +H+ IHT +
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEK 120
K + C+ CGK FS + L VH+R+HTGEK
Sbjct: 9 KPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C+ CG F S L+ H+ IHTGE+ P G
Sbjct: 9 KPYGCNECGKDFSSKSYLIVHQRIHTGEKLSGPSSG 44
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 636 SQENTYQCDPCGKVFPSKKYMREHIKRIHINQ 667
S E Y C+ CGK F SK Y+ H +RIH +
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVH-QRIHTGE 36
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C VCGK FS +L+VH+R+H+G+KP
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHTQRQ 148
EKP+ C CGK+FS SL +H+ IH+ ++
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C +CGKAFS + +L+ H++ HSG KP
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 70 CGKQFVTSSALRRHKKAVHLKIKDHSCD--VCGKVFSCPTNLTVHKRVHTGEKPFVCESC 127
CG+ F L HKK H+ K SC CGK F+ +L H ++H+ + ++CE
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Query: 128 GKS 130
G S
Sbjct: 75 GPS 77
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 612 CACTDCGRMFYNNGALGIHRRAVHSQENTYQC-DP-CGKVFPSKKYMREHIK 661
C CGR+F N L H++ H + ++ C +P CGK F KK+++EH+K
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 290 TGEKFVTCE--QCGKQLHGVYAFKRHLKSVHLKIKDLCCD--MCGKAFSCQTNLAAHKKT 345
+G + C+ CG+ H K H+ K C CGK+F+ + +L H K
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 346 HSGDKPYVCETCGKS 360
HS + Y+CE G S
Sbjct: 63 HSDTRDYICEFSGPS 77
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 117 TGEKPFVCE--SCGKSFSQHSSLFIHKMIHTQRQYRYECSH--CQKKFFRNSKLTSHLKT 172
+G C+ CG+ FS L HK Q + C C K F L H+K
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 173 HSDLRPYECDICNAS 187
HSD R Y C+ S
Sbjct: 63 HSDTRDYICEFSGPS 77
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 347 SGDKPYVCE--TCGKSFAQNASLKYHHDTVHALVKKRLFQCSQ--CPKKFYRNSKLNAHL 402
SG C+ CG+ F+ L +H H + ++ F C + C K F L H+
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH--IHQKSFSCPEPACGKSFNFKKHLKEHM 60
Query: 403 KIHTEERACFCDI 415
K+H++ R C+
Sbjct: 61 KLHSDTRDYICEF 73
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + CDVC K FS +LT H+RVH+GEKP
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
CD+C KAFS +L H++ HSG+KP
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKP+ C+ C K+FS H+SL H+ +H+
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHS 36
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ CD+C F ++L QH+ +H+GE+ P G
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSSG 46
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C+ CGK FS + L H+RVHTGEKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C+ CG F ++S L +H+ +HTGE+ P G
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSSG 46
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C+ CGKAFS + LA H++ H+G+KP
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 120 KPFVCESCGKSFSQHSSLFIHKMIHT 145
KP+ C CGK+FSQ S L H+ +HT
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHT 36
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 383 FQCSQCPKKFYRNSKLNAHLKIHTEER 409
+QC++C K F + SKL H ++HT E+
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEK 39
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C CGK FS T+L H+RVHTGEKP
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C CG F +++ L+QH+ +HTGE+ P G
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG 46
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKP+ C+ CGK+FSQ + L H+ +HT
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHT 36
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C CGKAFS T+L H++ H+G+KP
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K H C CGK FS + L VH+R+HTGE P
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKP C CGKSFS +S L +H+ IHT
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHT 36
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+PH C CG F +S L+ H+ IHTGE P G
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG 46
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C CGK+FS + L H++ H+G+ P
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 96 CDVCGKVFSCPTNLTVHKRVHTGEKP 121
C CGKVF+ TNL +H+++HTGE+P
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHTQRQ 148
E PF+C CGK F+ ++L IH+ IHT +
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGER 39
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 324 LCCDMCGKAFSCQTNLAAHKKTHSGDKP 351
C CGK F+ +TNL H+K H+G++P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 826 PHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
P +C CG F + L+ H+ IHTGER P G
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGERPSGPSSG 46
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKR 795
E PF C +CGK++ K++L +H G+R
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGER 39
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 383 FQCSQCPKKFYRNSKLNAHLKIHTEER 409
F CS+C K F + L H KIHT ER
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGER 39
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C+ CGKVFS + L+ H+++HTGEKP
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 827 HMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+ C+ CG F ++S L QH+ IHTGE+ P G
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG 46
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 380 KRLFQCSQCPKKFYRNSKLNAHLKIHTEER 409
++ ++C++C K F RNS+L+ H KIHT E+
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 150 RYECSHCQKKFFRNSKLTSHLKTHSDLRP 178
RY+C+ C K F RNS+L+ H K H+ +P
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C+ CGK FS + L+ H+K H+G+KP
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 266 RYQCPMCQIVLKRKDTLRHHLKLHTGEK 293
RY+C C V R L H K+HTGEK
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EK + C CGK FS++S L H+ IHT
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHT 36
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 412 FCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHLKRHSKTAH 463
C +C SF + ++H R +H + C+YC ATF S L RH H
Sbjct: 30 LCPVCGESFASKGAQERHLRLLHAAQV-FPCKYCPATFYSSPGLTRHINKCH 80
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 352 YVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHL-KIHTEE 408
++C CG+SFA + + H +HA ++F C CP FY + L H+ K H E
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHA---AQVFPCKYCPATFYSSPGLTRHINKCHPSE 83
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 850 TGERHICPVCGRGFTQRGAMKKHVSTLHHL-VLPNKSDEPPTQLYGGEEGNRHAN 903
+ E H+CPVCG F +GA ++H+ LH V P K P Y RH N
Sbjct: 25 SAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYC--PATFYSSPGLTRHIN 77
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 181 CDICNASFKTNYERKKHRIYVHSETRPYQCNLCNASF-KRPGHLKQHGKTHNTENK 235
C +C SF + +++H +H+ + + C C A+F PG + K H +EN+
Sbjct: 31 CPVCGESFASKGAQERHLRLLHA-AQVFPCKYCPATFYSSPGLTRHINKCHPSENR 85
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGR 669
C CG F + GA H R +H+ + + C C F S + HI + H ++ R
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQ-VFPCKYCPATFYSSPGLTRHINKCHPSENR 85
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C+ CGKVF+ ++LT H R+HTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C+ CG F ++S L H IHTGE+ P G
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG 46
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKP+ C CGK F+Q+S L H IHT
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHT 36
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 380 KRLFQCSQCPKKFYRNSKLNAHLKIHTEER 409
++ ++C++C K F +NS L H +IHT E+
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 151 YECSHCQKKFFRNSKLTSHLKTHSDLRP 178
Y+C+ C K F +NS LT+H + H+ +P
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C+ CGK F+ ++L H + H+G+KP
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 349 DKPYVCETCGKSFAQNASLKYH 370
+KPY C CGK F QN+ L H
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNH 31
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKP+ C+ CGK+FSQ SL +H +HT
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHT 35
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + CD CGK FS +L VH RVHTG P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
CD CGKAFS + +L H + H+G P
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 349 DKPYVCETCGKSFAQNASLKYH 370
+KPY C+ CGK+F+Q SL H
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVH 30
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHG 793
E P+ C QCGK +++K SL +H+ G
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 638 ENTYQCDPCGKVFPSKKYMREHIKRIHINQG 668
E Y+CD CGK F K + HI R+H G
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHI-RVHTGSG 38
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTG 851
+P+ CD CG F + +L+ H +HTG
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTG 36
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C+ CGK FS + L H+R+HTGEKP
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKP+ C CGK+FSQ S L H+ IHT
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHT 36
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C+ CG F ++S L +H+ IHTGE+ P G
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG 46
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C+ CGKAFS + LA H++ H+G+KP
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 380 KRLFQCSQCPKKFYRNSKLNAHLKIHTEER 409
++ ++C++C K F + SKL H +IHT E+
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 349 DKPYVCETCGKSFAQNASLKYHH 371
+KPY C CGK+F+Q + L H
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQ 32
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
RP++C +CG F S L++H+ IHTGE+ P G
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG 46
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 96 CDVCGKVFSCPTNLTVHKRVHTGEKP 121
C VCGK F+ +NL H+++HTGEKP
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C +CGKAF+ ++NL H+K H+G+KP
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
E+P++C CGK+F+ S+L H+ IHT
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHT 36
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C+ CGK F +NLT H+ +HTGEKP
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHTQRQ 148
EKP+ C CGK+F HS+L H++IHT +
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C+ CG F+ S L H+ IHTGE+ P G
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSSG 46
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C+ CGKAF +NL H+ H+G+KP
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 117 TGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
+GEKP+ C CGK+F+ S L +HK +HT
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHT 34
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K +SC+ CGK F+ + L VHK VHTG KP
Sbjct: 9 KPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 322 KDLCCDMCGKAFSCQTNLAAHKKTHSGDKP 351
K C+ CGKAF+ ++ L HK H+G KP
Sbjct: 9 KPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C+ CG F S L+ H+ +HTG + P G
Sbjct: 9 KPYSCNECGKAFTFKSQLIVHKGVHTGVKPSGPSSG 44
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 347 SGDKPYVCETCGKSFAQNASLKYHHDTVHALVK 379
SG+KPY C CGK+F + L H VH VK
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKG-VHTGVK 37
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C+ CGK FS + L+ H+R HTGEKP
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 322 KDLCCDMCGKAFSCQTNLAAHKKTHSGDKP 351
K C+ CGK FS ++ L+AH++TH+G+KP
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKP+ C CGK+FSQ S L H+ HT
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHT 36
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C+ CG F + S L H+ HTGE+ P G
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG 46
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 349 DKPYVCETCGKSFAQNASLKYHHDT 373
+KPY C CGK+F+Q + L H T
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRT 34
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKP+ C CGK+F+ S+LF H+ IHT
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHT 36
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C CGK F+ +NL H+++HTGEKP
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C CGKAF+ ++NL H+K H+G+KP
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C CG F S L H+ IHTGE+ P G
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG 46
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K C CGK FS + L H+R+HTGEKP
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 18/27 (66%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKPF C CGKSFS S L H+ IHT
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHT 36
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 322 KDLCCDMCGKAFSCQTNLAAHKKTHSGDKP 351
K C CGK+FS + LA H++ H+G+KP
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P C CG F SS L H+ IHTGE+ P G
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKPSGPSSG 46
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 380 KRLFQCSQCPKKFYRNSKLNAHLKIHTEER 409
++ F+C++C K F +S+L H +IHT E+
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEK 39
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKPF CE CGK F+Q+S L H+ +HT
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHT 36
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P C+ CG RF ++S L H+ +HTGE+ P G
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG 46
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K C+ CGK F+ + L H+RVHTGEKP
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 24/30 (80%)
Query: 380 KRLFQCSQCPKKFYRNSKLNAHLKIHTEER 409
++ F+C +C K+F +NS+L++H ++HT E+
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEK 39
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 349 DKPYVCETCGKSFAQNASLKYHHDTVHALVK 379
+KP+ CE CGK F QN+ L + H VH K
Sbjct: 10 EKPFKCEECGKRFTQNSQL-HSHQRVHTGEK 39
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 322 KDLCCDMCGKAFSCQTNLAAHKKTHSGDKP 351
K C+ CGK F+ + L +H++ H+G+KP
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C +CG F+ SS L+QH +H+GER P G
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSSG 46
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C VCGK F ++L H VH+GE+P
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C +CGKAF ++L H HSG++P
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 206 RPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+PY+C +C +F+ HL QH H+ E
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGE 38
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C+ CGK FS ++LT H+ +HTG+KP
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHTQRQ 148
EKP+ C CGK+FS SSL H+ IHT ++
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C+ CGKAFS +++L H+ H+G KP
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C+ CG F S+L H+ IHTG++ P G
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSSG 46
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKR 795
E P+ C QCGK ++ +SSL H + GK+
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
+ H C CGK F +N H+R+HTGEKP
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
R H C CG F ++S +QHR IHTGE+ P G
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSSG 46
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C +CGK F+ + L VH+++HTGEKP
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKP+ C CGKSF++ S L +H+ IHT
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHT 36
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C +CG F K S L H+ IHTGE+ P G
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG 46
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C +CGK+F+ ++ L H++ H+G+KP
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 380 KRLFQCSQCPKKFYRNSKLNAHLKIHTEER 409
++ ++CS C K F + S+L+ H +IHT E+
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEK 39
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGE 119
K H C+ CGK FS + L +H+R+HTGE
Sbjct: 9 KLHECNNCGKAFSFKSQLIIHQRIHTGE 36
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 117 TGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
+GEK C +CGK+FS S L IH+ IHT
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHT 34
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 91 IKDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
+K + C CGK F + L +H R HTGEKP
Sbjct: 8 VKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 321 IKDLCCDMCGKAFSCQTNLAAHKKTHSGDKP 351
+K C CGKAF ++ L H +TH+G+KP
Sbjct: 8 VKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 824 VRPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
V+P+ C CG F+ S L+ H HTGE+ P G
Sbjct: 8 VKPYGCSECGKAFRSKSYLIIHMRTHTGEKPSGPSSG 44
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 117 TGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQ 148
+G KP+ C CGK+F S L IH HT +
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 768 PFACPQCGKLYNKKSSLYMHLSTKHGKR 795
P+ C +CGK + KS L +H+ T G++
Sbjct: 10 PYGCSECGKAFRSKSYLIIHMRTHTGEK 37
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C+ CGKAF +++LA H+ THSG+KP
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKP 40
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C+ CGK F ++L +H+ H+GEKP
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKP+ C CGK+F SSL IH+ H+
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHS 36
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C+ CG F+ S+L H+ H+GE+ P G
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSSG 46
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKR 795
E P+ C +CGK + +SSL +H +T G++
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEK 39
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 349 DKPYVCETCGKSFAQNASLKYHHDT 373
+KPY C CGK+F +SL H T
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQAT 34
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 96 CDVCGKVFSCPTNLTVHKRVHTGEKP 121
C+ C K F+ ++LTVH+R+HTGEKP
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 380 KRLFQCSQCPKKFYRNSKLNAHLKIHTEER 409
K+LF+C++C K F ++S L H +IHT E+
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEK 39
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
+K F C C K+F+Q SSL +H+ IHT
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHT 36
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 829 CDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
C+ C F +SS+L H+ IHTGE+ P G
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKPSGPSSG 46
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 91 IKDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K H C CG+ F+ ++L H+R+HTGEKP
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 824 VRPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+ H C CG F S L QH+ IHTGE+ P G
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG 46
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C CG+ F+ +++L H++ H+G+KP
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKPF CE CGK F+Q+S L H+ +HT
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHT 36
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P C+ CG RF ++S L H+ +HTGE+ P G
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSSG 46
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K C+ CGK F+ ++L H+RVHTGEKP
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 380 KRLFQCSQCPKKFYRNSKLNAHLKIHTEER 409
++ FQC +C K+F +NS L++H ++HT E+
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 322 KDLCCDMCGKAFSCQTNLAAHKKTHSGDKP 351
K C+ CGK F+ ++L +H++ H+G+KP
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 349 DKPYVCETCGKSFAQNASLKYHHDTVHALVK 379
+KP+ CE CGK F QN+ L + H VH K
Sbjct: 10 EKPFQCEECGKRFTQNSHL-HSHQRVHTGEK 39
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C CGK FS + L +H R H+GEKP
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 322 KDLCCDMCGKAFSCQTNLAAHKKTHSGDKP 351
K C CGKAFS ++ L H +THSG+KP
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHTQRQ 148
EKP+ C CGK+FS S L IH H+ +
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKR 795
E P+ C +CGK ++ KS L +H+ T G++
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 151 YECSHCQKKFFRNSKLTSHLKTHSDLRP 178
Y CS C K F S L H++THS +P
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
+ + C CGK F+ + L +H+R+HTGEKP
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C CGKAF+ ++ L H++ H+G+KP
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 380 KRLFQCSQCPKKFYRNSKLNAHLKIHTEER 409
+R ++CS+C K F R S L H +IHT E+
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEK 39
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
R + C CG F + S L+ H+ IHTGE+ P G
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSSG 46
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
E+ + C CGK+F++ S+L +H+ IHT
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHT 36
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 151 YECSHCQKKFFRNSKLTSHLKTHSDLRP 178
YECS C K F R S L H + H+ +P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEK 293
Y+C C RK TL H ++HTGEK
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEK 39
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C+ CGKVF + L+ H+R+HTGEKP
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C+ CG F+ +S L +H+ IHTGE+ P G
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG 46
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKP+ C CGK F +S L H+ IHT
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHT 36
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C+ CGK F + L+ H++ H+G+KP
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C+ CG F ++S L++HR IHTGE+ P G
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSSG 46
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C+ CGKVF+ ++L H+ +HTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKP+ C CGK F+Q+S L H+ IHT
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHT 36
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C+ CGK F+ ++L H+ H+G+KP
Sbjct: 15 CNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 147 RQYRYECSHCQKKFFRNSKLTSHLKTHSD 175
R+ YECS C K F RNS+L H +THS
Sbjct: 9 REKPYECSECGKAFIRNSQLIVHQRTHSG 37
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 378 VKKRLFQCSQCPKKFYRNSKLNAHLKIHTEERA 410
+++ ++CS+C K F RNS+L H + H+ E
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSGESG 40
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKP+ C CGK+F ++S L +H+ H+
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHS 36
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGE 119
K + C CGK F + L VH+R H+GE
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 349 DKPYVCETCGKSFAQNASLKYHHDT 373
+KPY C CGK+F +N+ L H T
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRT 34
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGD 349
C CGKAF + L H++THSG+
Sbjct: 15 CSECGKAFIRNSQLIVHQRTHSGE 38
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHTQRQ 148
EKP++C CGK+F+ S+L H+ IHT+++
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQK 39
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 322 KDLCCDMCGKAFSCQTNLAAHKKTHSGDKP 351
K C CGKAF+ ++NL H+K H+ KP
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C CGK F+ +NL H+++HT +KP
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 62 EKLFICEECGKQFVTSSALRRHKKAVHLKIK 92
EK +IC ECGK F S L +H+K +H K K
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQK-IHTKQK 39
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P++C CG F S L++H+ IHT ++ P G
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG 46
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKP++C CGKSF Q S L H+ IHT
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHT 36
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P++C+ CG F + S L +HR IHTGE+ P G
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSSG 46
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C+ CGK F ++L H+R+HTGEKP
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 62 EKLFICEECGKQFVTSSALRRHKK 85
EK +IC ECGK F+ S L RH++
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRR 33
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 349 DKPYVCETCGKSFAQNASLKYH 370
+KPY+C CGKSF Q + L H
Sbjct: 10 EKPYICNECGKSFIQKSHLNRH 31
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 322 KDLCCDMCGKAFSCQTNLAAHKKTHSGDKP 351
K C+ CGK+F +++L H++ H+G+KP
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C+ CGKVF+ ++L H+RVHTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKP+ C CGK F+Q+S L H+ +HT
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHT 36
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C+ CG F ++S L +HR +HTG + P G
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG 46
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C+ CGK F+ ++LA H++ H+G KP
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 349 DKPYVCETCGKSFAQNASLKYH 370
+KPY C CGK F QN+ L H
Sbjct: 10 EKPYKCNECGKVFTQNSHLARH 31
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K C C K F+ +NL VH+R HTGEKP
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 322 KDLCCDMCGKAFSCQTNLAAHKKTHSGDKP 351
K C C KAF+ ++NL H++TH+G+KP
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKPF C C K+F+ S+L +H+ HT
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHT 36
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 151 YECSHCQKKFFRNSKLTSHLKTHSDLRP 178
+ECS CQK F S L H +TH+ +P
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKR 795
E PF C +C K +N KS+L +H T G++
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEK 39
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 117 TGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
+GEKP+ C CGK+F S L IH+ HT
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHT 34
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGE 119
K + C CGK F + L +H+R HTGE
Sbjct: 9 KPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 347 SGDKPYVCETCGKSFAQNASLKYHHDT 373
SG+KPY C CGK+F + L H T
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRT 32
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C+ CG F ++S L +HR IHTGE+ P G
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG 46
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C+ CGKVF+ ++L H+ +HTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
+KP+ C CGK F+Q+S L H+ IHT
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHT 36
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C+ CGK F+ ++LA H+ H+G+KP
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 380 KRLFQCSQCPKKFYRNSKLNAHLKIHTEER 409
K+ ++C++C K F +NS L H IHT E+
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEK 39
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C+ CG F ++S L +HR IHTGE+ P G
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG 46
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C+ CGKVF+ ++L H+ +HTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKP+ C CGK F+Q+S L H+ IHT
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHT 36
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C+ CGK F+ ++LA H+ H+G+KP
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 349 DKPYVCETCGKSFAQNASLKYH 370
+KPY C CGK F QN+ L H
Sbjct: 10 EKPYKCNECGKVFTQNSHLARH 31
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K ++C+ CGK F + L H+R+HTGEKP
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKP+ CE CGK+F S L H+ IHT
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHT 36
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C+ CG F S L +H+ IHTGE+ P G
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSSG 46
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C+ CGKAF + L H++ H+G+KP
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 349 DKPYVCETCGKSFAQNASLKYH 370
+KPY CE CGK+F ++ L+ H
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEH 31
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 380 KRLFQCSQCPKKFYRNSKLNAHLKIHTEER 409
++ + C +C K F +S+L H +IHT E+
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEK 39
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 117 TGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
+GEKP+VC CGK+F + S H+ IHT
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHT 34
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGE 852
+P++C CG F + S + H IHTGE
Sbjct: 9 KPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 347 SGDKPYVCETCGKSFAQNASLKYH 370
SG+KPYVC CGK+F + + H
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITH 29
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEK 120
K H+CD CGK F + L +H+RVH GEK
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGEK 39
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 62 EKLFICEECGKQFVTSSALRRHKKAVHLKIK 92
EK C+ECGK F SALR H++ VH+ K
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQR-VHMGEK 39
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 31/116 (26%)
Query: 266 RYQCPM--CQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKD 323
RY C C + L+ HL HTGEK C++ G
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEG---------------------- 40
Query: 324 LCCDMCGKAFSCQTNLAAHKKTHSGDKPYVCET--CGKSFAQNASLKYHHDTVHAL 377
C K F+ +L H TH+G+K + C++ C F A++K H + H +
Sbjct: 41 -----CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNI 91
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 11/80 (13%)
Query: 329 CGKAFSCQTNLAAHKKTHSGDKPYVC--ETCGKSFAQNASLKYHHDTVHAL--VKKRLFQ 384
CG A++ L AH H+G+KP+ C E C K F HH T H+L ++ F
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTS-----LHHLTRHSLTHTGEKNFT 65
Query: 385 CSQ--CPKKFYRNSKLNAHL 402
C C +F + + H
Sbjct: 66 CDSDGCDLRFTTKANMKKHF 85
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 40/111 (36%), Gaps = 31/111 (27%)
Query: 772 PQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPEVRPHMCDL 831
CG YNK L HLS G++ P E C K ++ +
Sbjct: 9 ADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHH------------------ 50
Query: 832 CGARFKKSSALLQHRPIHTGERHIC---PVCGRGFTQRGAMKKHVSTLHHL 879
L +H HTGE++ C FT + MKKH + H++
Sbjct: 51 ----------LTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNI 91
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 27/79 (34%)
Query: 50 YSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNL 109
+ L+ H+ HT EK F C+E G C K F+ +L
Sbjct: 19 WKLQAHLSKHTGEKPFPCKEEG---------------------------CEKGFTSLHHL 51
Query: 110 TVHKRVHTGEKPFVCESCG 128
T H HTGEK F C+S G
Sbjct: 52 TRHSLTHTGEKNFTCDSDG 70
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 150 RYECS--HCQKKFFRNSKLTSHLKTHSDLRPYEC--DICNASFKTNYERKKHRIYVHSET 205
RY CS C + +N KL +HL H+ +P+ C + C F + + +H + H+
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSL-THTGE 61
Query: 206 RPYQCNL--CNASFKRPGHLKQH 226
+ + C+ C+ F ++K+H
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKH 84
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C+ CGK ++ NL +H++VHTGE+P
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKP+ CE CGK ++ +L +H+ +HT
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHT 36
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C+ CGK ++ + NL H+K H+G++P
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C+ CG + L H+ +HTGER P G
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG 46
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKR 795
E P+ C +CGK YN K +L MH G+R
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGER 39
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHTQRQ 148
EKPF C CGK+FS H L H+ IHT +
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEK 39
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K C CGK FS L H+R+HTGEKP
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P C CG F L QHR IHTGE+ P G
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG 46
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 322 KDLCCDMCGKAFSCQTNLAAHKKTHSGDKP 351
K C CGKAFS L H++ H+G+KP
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 91 IKDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
+K + C C K FS + L VH+R HTG KP
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 321 IKDLCCDMCGKAFSCQTNLAAHKKTHSGDKP 351
+K C C K FS ++ L H+++H+G KP
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 120 KPFVCESCGKSFSQHSSLFIHKMIHT 145
KP+ C C K+FS S L +H+ HT
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHT 36
>pdb|2CTD|A Chain A, Solution Structure Of Two Zf-C2h2 Domains From Human Zinc
Finger Protein 512
Length = 96
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 262 VDMVRYQCPMCQIVLKRK-DTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVH 318
VD CP CQ V ++ + L+ H++ E F TC CGKQL + K H+ + H
Sbjct: 30 VDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMF-TCHHCGKQLRSLAGMKYHVMANH 86
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 25 EMYISLLDLTSVPYVLPHSRQHLSKYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHK 84
+ Y+ ++D SV + + LK H+ + K+++F C CGKQ + + ++ H
Sbjct: 24 QWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHME-NCKQEMFTCHHCGKQLRSLAGMKYHV 82
Query: 85 KAVH 88
A H
Sbjct: 83 MANH 86
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHTQRQ 148
EKPF C+ CGKSF S L H M+HT +
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEK 39
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K CD+CGK F + L H VHT EKP
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P CD+CG F S L +H +HT E+ P G
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG 46
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKP+ C CGKSF + S L +H+ IHT
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHT 36
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C CGK F + L VH+R+HTGE P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C CG F K S L H+ IHTGE P G
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSSG 46
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 380 KRLFQCSQCPKKFYRNSKLNAHLKIHTEE 408
++ ++CS C K F + S+L+ H +IHT E
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGE 38
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHTQRQ 148
EKPF C CGK FS+ S+L +H +HT +
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEK 39
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 383 FQCSQCPKKFYRNSKLNAHLKIHTEER 409
F+C +C K F R S LN H K+HT E+
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEK 39
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K C CGK FS + L VH ++HTGEKP
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 322 KDLCCDMCGKAFSCQTNLAAHKKTHSGDKP 351
K C CGK FS ++ L H K H+G+KP
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P C CG F + SAL H +HTGE+ P G
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG 46
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K H C C K FS + L +H+R+HTGE P
Sbjct: 9 KLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 117 TGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
+GEK C C K+FS HS L IH+ IHT
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHT 34
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 96 CDVCGKVFSCPTNLTVHKRVHTGEKP 121
C CGK F+ + L++H+++HTGEKP
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 383 FQCSQCPKKFYRNSKLNAHLKIHTEER 409
F+C++C K F R S L+ H KIHT E+
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEK 39
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C CGKAF+ ++ L+ H+K H+G+KP
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEK 293
++C C RK TL H K+HTGEK
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEK 39
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 829 CDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
C CG F + S L H+ IHTGE+ P G
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG 46
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 120 KPFVCESCGKSFSQHSSLFIHKMIHT 145
K F C CGK+F++ S+L +H+ IHT
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHT 36
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 151 YECSHCQKKFFRNSKLTSHLKTHSDLRP 178
+EC+ C K F R S L+ H K H+ +P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C CG F + S L H+ HTGERH P G
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSSG 46
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHTQRQY 149
EKP+ C CGK+F++ S L IH+ HT ++
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGERH 40
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKR 795
E P+ C CGK + +KS L++H + G+R
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEK 120
K + C CGK F+ + L +H++ HTGE+
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 380 KRLFQCSQCPKKFYRNSKLNAHLKIHTEER 409
++ ++CS C K F R S L+ H + HT ER
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C+ CGKVF+ ++L H+R+HTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKP+ C CGK F+Q+S L H+ IHT
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHT 36
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 349 DKPYVCETCGKSFAQNASLKYHHDTVHALVK 379
+KPY C CGK F QN+ L +H +H VK
Sbjct: 10 EKPYKCNECGKVFTQNSHLA-NHQRIHTGVK 39
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C+ CG F ++S L H+ IHTG + P G
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG 46
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C+ CGK F+ ++LA H++ H+G KP
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 151 YECSHCQKKFFRNSKLTSHLKTHSDLRP 178
Y+C+ C K F +NS L +H + H+ ++P
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 117 TGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
+G++ + C+ CGKSF Q SL +H+ IHT
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHT 34
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 94 HSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
+ C CGK F +LT+H+R+HTG P
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 347 SGDKPYVCETCGKSFAQNASLKYH 370
SG + Y C+ CGKSF Q SL H
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLH 29
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 117 TGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
+G+KP VC CGK+F Q S L H+ IH+
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHS 34
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P +C+ CG F++SS L +H+ IH+GE+ P G
Sbjct: 9 KPLVCNECGKTFRQSSCLSKHQRIHSGEKPSGPSSG 44
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 96 CDVCGKVFSCPTNLTVHKRVHTGEKP 121
C+ CGK F + L+ H+R+H+GEKP
Sbjct: 13 CNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 322 KDLCCDMCGKAFSCQTNLAAHKKTHSGDKP 351
K L C+ CGK F + L+ H++ HSG+KP
Sbjct: 9 KPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 347 SGDKPYVCETCGKSFAQNASLKYHH 371
SG KP VC CGK+F Q++ L H
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQ 30
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C+ CGK F C +L H VHTGEKP
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHTQRQ 148
EKP+ CE CGK F L+ H M+HT +
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEK 39
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C+ CGK F C+ +L H H+G+KP
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C +C KAF+ + +LA H+KTH+G+KP
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 206 RPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+PY+C +C+ +F + HL QH KTH E
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGE 38
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C VC K F+ +L H++ HTGEKP
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C +C F + + L QH+ HTGE+ P G
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSSG 46
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 90 KIKDHSCDVCGKVFSCPTNLTVHKRVHTGEK 120
K K + C CGK F +NLT H+ +HTGEK
Sbjct: 9 KEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 117 TGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
T EKP+ C CGK+F S+L H++IHT
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHT 36
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C CG F+ S L H+ IHTGE+ P G
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEKRSGPSSG 46
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 316 SVHLKIKDLCCDMCGKAFSCQTNLAAHKKTHSGDK 350
S K K C CGKAF ++NL H+ H+G+K
Sbjct: 5 SSGTKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 322 KDLCCDMCGKAFSCQTNLAAHKKTHSGDKPY 352
K + C++CGK F +L HK +HSG+KPY
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY 41
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPF 122
K +C++CGK+F +L HK H+GEKP+
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
+ + C CGK F + L++H+R+H GEKP
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C CGKAF ++ L+ H++ H G+KP
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 380 KRLFQCSQCPKKFYRNSKLNAHLKIHTEER 409
+R ++CS+C K F + S L+ H +IH E+
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEK 39
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 151 YECSHCQKKFFRNSKLTSHLKTHSDLRP 178
YECS C K F + S L+ H + H +P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 117 TGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQ 148
+GEKPF C C K+FS S L +H+ H + +
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEK 37
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C CG F+ +S LL+H+ +H+GE+ P G
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG 46
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K ++C CGK F + L H+RVH+GEKP
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKP+ C+ CGKSF S L H+ +H+
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHS 36
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C CGK+F + L H++ HSG+KP
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K C CGK ++ +LT H+RVHTGEKP
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKPF C CGKS++Q L H+ +HT
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHT 36
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P C CG + + L QH+ +HTGE+ P G
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG 46
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 322 KDLCCDMCGKAFSCQTNLAAHKKTHSGDKP 351
K C CGK+++ + +L H++ H+G+KP
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C CGKAFS + L +H++TH+G+KP
Sbjct: 15 CHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 94 HSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
+ C CGK FS L H+R H GEKP
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 151 YECSHCQKKFFRNSKLTSHLKTHSDLRP 178
YEC C K F R +L SH +TH+ +P
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKP+ C CGK+F +H+ L H+ IHT
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHT 36
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C CGK F T+L H+R+HTG +P
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 380 KRLFQCSQCPKKFYRNSKLNAHLKIHTEER 409
++ ++CS+C K F+R++ LN H +IHT R
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYR 39
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C CG F + + L +HR IHTG R P G
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG 46
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 151 YECSHCQKKFFRNSKLTSHLKTHSDLRP 178
Y+CS C K F R++ L H + H+ RP
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C CGKAF T+L H++ H+G +P
Sbjct: 15 CSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHTQRQY 149
EKP+ C CGKSF+ S L IH+ HT ++
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGERH 40
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C CG F S L H+ HTGERH P G
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG 46
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEK 120
K + C CGK F+ + L +H++ HTGE+
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGE 119
K + C+ C K F+ +NL VH+R HTGE
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKP+ C C K+F+ S+L +H+ HT
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHT 36
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGD 349
C+ C KAF+ ++NL H++TH+G+
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGE 38
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
RP+ C CG FK S+L+ HR HTGE+ P G
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSSG 46
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
+ + C CGK F ++L H+R HTGEKP
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C CGKAF +++L H+++H+G+KP
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
++P+ C CGK+F SSL H+ HT
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHT 36
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 380 KRLFQCSQCPKKFYRNSKLNAHLKIHTEERA 410
+R F+C++C K F R S L HL++H+ E++
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREKS 40
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 685 EKPFKCNLCGTGFESDRQVSGH 706
E+PFKCN CG GF ++GH
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGH 31
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHTQRQ 148
E+PF C CGK F + S L H +H++ +
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 206 RPYQCNLCNASFKRPGHLKQHGKTHNTE 233
RP++CN C F R HL H + H+ E
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSRE 38
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 24/55 (43%)
Query: 347 SGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAH 401
SG CE CG + Q ASL +H V F C C K+F + + AH
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAH 57
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 117 TGEKPFVCESCGKSFSQHSSLFIHKMIH--TQRQYRYECSHCQKKFFRNSKLTSH-LKTH 173
+G CE CG + Q +SL H+ H T R+ C C K+F + + +H K+H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Query: 174 SDL 176
L
Sbjct: 63 PAL 65
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGE 292
Y CP+C + KRKD + +H++ H G
Sbjct: 11 YSCPVCGLRFKRKDRMSYHVRSHDGS 36
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEK 120
K C CGK F NL H+R+HTGEK
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
+KPF C CGKSF +L H+ IHT
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHT 36
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 322 KDLCCDMCGKAFSCQTNLAAHKKTHSGDK 350
K C CGK+F + NL H++ H+G+K
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P C CG F+ L+ H+ IHTGE+
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 120 KPFVCESCGKSFSQHSSLFIHKMIHT 145
KP+VC CGK+F S L IH HT
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHT 36
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 91 IKDHSCDVCGKVFSCPTNLTVHKRVHTGE 119
+K + C+ CGK F + L +H R HTGE
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 824 VRPHMCDLCGARFKKSSALLQHRPIHTGE 852
++P++C+ CG F+ S L+ H HTGE
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 321 IKDLCCDMCGKAFSCQTNLAAHKKTHSGD 349
+K C+ CGKAF ++ L H +TH+G+
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C CG F+++S L +H+ IHTGE+ P G
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG 46
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C CGKVF ++L H+ +HTGEKP
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKP+ C CGK F ++S L H++IHT
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHT 36
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGE 852
+ H+CD+CG +FK L H+ +HT +
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 206 RPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+P+QC C F R HLK H +TH E
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGE 28
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEK 293
+QC CQ R D L+ H + HTGEK
Sbjct: 3 FQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 383 FQCSQCPKKFYRNSKLNAHLKIHTEER 409
FQC C +KF R+ L H + HT E+
Sbjct: 3 FQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc Finger
Protein 32
Length = 42
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHK 141
E P++C CGKSF+Q SL +H+
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQ 31
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 349 DKPYVCETCGKSFAQNASLKYHH 371
+ PY+C CGKSF Q SL H
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQ 31
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 91 IKDHSCDVCGKVFSCPTNLTVHKRVHTG 118
++ +SC VCGK FS + H RVHTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKP+ CE+CG F Q + L H +IHT
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHT 35
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 349 DKPYVCETCGKSFAQNASLKYH 370
+KPY CETCG F Q A L+ H
Sbjct: 9 EKPYKCETCGARFVQVAHLRAH 30
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTG 851
+P+ C+ CGARF + + L H IHTG
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTG 36
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 350 KPYVCETCGKSFAQNASLKYH 370
KPYVCE CGK F Q++ L H
Sbjct: 1 KPYVCERCGKRFVQSSQLANH 21
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 120 KPFVCESCGKSFSQHSSLFIH 140
KP+VCE CGK F Q S L H
Sbjct: 1 KPYVCERCGKRFVQSSQLANH 21
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGE 119
K +SC+VCGK F +L H RVHT E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 206 RPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+PY CN+C +F HL QH + H E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 383 FQCSQCPKKFYRNSKLNAHLKIHTEE 408
+ C+ C K F ++ LN HL++HT+E
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHTQR 147
EKP+ C CGK+F + L H +HTQ
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 825 RPHMCDL--CGARFKKSSALLQHRPIHTGER 853
RP MC CG RF +S L +H+ HTGE+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKPF C+ CGK+F Q+ L H IHT
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHT 36
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K C CGK F +L H R+HTGEKP
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 383 FQCSQCPKKFYRNSKLNAHLKIHTEER 409
F+C +C K F +N L +HL+IHT E+
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEK 39
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 322 KDLCCDMCGKAFSCQTNLAAHKKTHSGDKP 351
K C CGKAF +LA+H + H+G+KP
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEK 120
K + C+ CGK ++ NL +H+RVH GEK
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIH 144
EKP+ CE CGK +++ +L +H+ +H
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKRS 796
E P+ C CGK YN++ +L MH G+++
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEKT 40
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 345 THSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHLKI 404
T G+ Y C+ C + + ++ H+ T H +++ C C K+F R + AH+KI
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKR-NVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 118 GEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYR-YECSHCQKKFFRNSKLTSHLK 171
GE + C+ C + ++ S+ H + +R + Y C C K+F R +T+H+K
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 412 FCDICNHSFKTDNEVKKHKRFVHTDERPHACQ 443
C C F + + H + VHT ERPH CQ
Sbjct: 14 ICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 63 KLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDV 98
K +IC+ CGK F L H K VH + H C V
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 92 KDHSCDVCGKVFSCPTNLTVH-KRVHTGEKPFVCE 125
K + C CGK FS P +L H K+VHT E+P C+
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 349 DKPYVCETCGKSFAQNASLKYHHDTVHA 376
KPY+C++CGK F++ L H VH
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVHT 37
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 120 KPFVCESCGKSFSQHSSLFIH-KMIHT 145
KP++C+SCGK FS+ L H K +HT
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHT 37
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 828 MCDLCGARFKKSSALLQHRPIHTGERHICPVCGRGFTQRGAMKKHVSTLHHL 879
+C LC F S +L QH +T +CPVC + FT + HV H++
Sbjct: 76 VCPLCLMPFSSSVSLKQHIR-YTEHTKVCPVCKKEFTSTDSALDHVCKKHNI 126
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDK 350
C MCGKAF+ ++L AH + H+G+K
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 96 CDVCGKVFSCPTNLTVHKRVHTGEK 120
C +CGK F+ ++L H R HTGEK
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P C +CG F ++S+L+ H HTGE+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|3IUF|A Chain A, Crystal Structure Of The C2h2-Type Zinc Finger Domain Of
Human Ubi-D4
Length = 48
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 349 DKPYVCETCGKSFAQNASLKYHHDTVH 375
DKPY C+ CGK + L YH+ H
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYAHSH 31
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKP+ C CGK+F +SS H+ +HT
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHT 36
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P+ C CG F +S+ QH+ +HTG+R P G
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG 46
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C CGK F ++ T H+R+HTG++P
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K ++C CGK FS L H+R+H+GEKP
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 151 YECSHCQKKFFRNSKLTSHLKTHS 174
YECS C K F R +L SH +TH+
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHA 34
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 117 TGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
+GE P+ C CGK+F++ L H+ H
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHA 34
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPT 799
E P+ C +CGK +N+K L H T H S P+
Sbjct: 8 ENPYECSECGKAFNRKDQLISHQRT-HAGESGPS 40
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 206 RPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+PYQC+ C SF P +H +TH+T+
Sbjct: 2 KPYQCDYCGRSFSDPTSKMRHLETHDTD 29
>pdb|3ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
pdb|4ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
Length = 30
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 206 RPYQCNLCNASFKRPGHLKQHGKT 229
RPY C+ CN SFK G+L +H K+
Sbjct: 1 RPYHCSYCNFSFKTKGNLTKHMKS 24
>pdb|1JA1|A Chain A, Cypor-Triple Mutant
pdb|1JA1|B Chain B, Cypor-Triple Mutant
Length = 622
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 808 VINIRNHMRQV-HLYPEVRP---HMCDLCGARFKKSSALLQHRPIHTGERHICPVCGRGF 863
V+ R H+ + YP +RP H+C+L + A+ +H HIC V
Sbjct: 364 VVEARRHILAILQDYPSLRPPIDHLCELLPRLQARYYAIASSSKVHPNSVHICAVAVEYE 423
Query: 864 TQRGAMKKHVST 875
+ G + K V+T
Sbjct: 424 AKSGRVNKGVAT 435
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
EKPF CE CGK F +S + H+ H+
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHS 36
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 322 KDLCCDMCGKAFSCQTNLAAHKKTHSGDKP 351
K C+ CGK F + +H+++HSG+KP
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 62 EKLFICEECGKQFVTSSALRRHKKA 86
EK F CEECGK F T+S H+++
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRS 34
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 206 RPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+PY+C C +F + GHL QH + H E
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGE 38
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 380 KRLFQCSQCPKKFYRNSKLNAHLKIHTEERA 410
K+ ++C +C K F + LN H ++HT ER+
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGERS 40
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 117 TGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
+GEKP+ C C ++FS ++ L H+ +HT
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 91 IKDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
+ + C C K FS L VH+R+HT EKP
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 117 TGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
T E PF C CGK+FS + L H++IH
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHA 36
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 96 CDVCGKVFSCPTNLTVHKRVHTGEKP 121
C+ CGK FS +L+ H+ +H GE P
Sbjct: 15 CNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIH 144
EKP+ C CGK+F S L +H+ H
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTH 35
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 151 YECSHCQKKFFRNSKLTSHLKTHS 174
YEC C K F R +L SH KTHS
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHS 36
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 325 CCDMCGKAFSCQTNLAAHKKTHSG 348
CC+ CGK FS + L +H+KTHSG
Sbjct: 15 CCE-CGKVFSRKDQLVSHQKTHSG 37
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 350 KPYVCETCGKSFAQNASLKYHHDTVH 375
KPY C CGK+F QN SL H H
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYH 36
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 426 VKKHKRFVHTDERPHACQYCSATFKKSDHLKRHSKTAHKEM 466
++ H+R +H +RP C YCS K+ +L +H K H +M
Sbjct: 25 LRIHER-IHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDM 64
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 67 CEECGKQFVTSSALRRH 83
C ECGKQF TS L+RH
Sbjct: 5 CRECGKQFTTSGNLKRH 21
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 96 CDVCGKVFSCPTNLTVHKRVHTGEK 120
C CGK F+ NL H R+H+GEK
Sbjct: 5 CRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|1VA3|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 3)
pdb|1SP1|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f3, Minimized Average Structure
Length = 29
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 383 FQCSQCPKKFYRNSKLNAHLKIHTEER 409
F C +CPK+F R+ L+ H+K H ++
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 114 RVHTGEKPFVCESCGKSFSQHSSLFIHKMIH 144
R TG KPF C C +SFS+ L +H+ H
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEK 293
Y+CP C K L HL+ HTGEK
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTG 851
+P+ C++CG RF+ L H IHTG
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTG 36
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 381 RLFQCSQCPKKFYRNSKLNAHLKIHTEER 409
++F C C K F L AHL+IHT E+
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECS 154
E+P+ C CGK+F +HS H + H +R +R + S
Sbjct: 10 ERPYGCNECGKNFGRHS----HLIEHLKRHFREKSS 41
>pdb|3ES9|A Chain A, Nadph-Cytochrome P450 Reductase In An Open Conformation
pdb|3ES9|B Chain B, Nadph-Cytochrome P450 Reductase In An Open Conformation
pdb|3ES9|C Chain C, Nadph-Cytochrome P450 Reductase In An Open Conformation
Length = 618
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 808 VINIRNHMRQV-HLYPEVRP---HMCDLCGARFKKSSALLQHRPIHTGERHICPVCGRGF 863
V+ R H+ + YP +RP H+C+L + ++ +H HIC V
Sbjct: 360 VVEARRHILAILQDYPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYE 419
Query: 864 TQRGAMKKHVST 875
+ G + K V+T
Sbjct: 420 AKSGRVNKGVAT 431
>pdb|1RIM|A Chain A, E6-Binding Zinc Finger (E6apc2)
Length = 33
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 383 FQCSQCPKKFYRNSKLNAHLKIH 405
F C +CPK+F R+ L+ H+ +H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLH 25
>pdb|1JA0|A Chain A, Cypor-W677x
pdb|1JA0|B Chain B, Cypor-W677x
Length = 620
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 808 VINIRNHMRQV-HLYPEVRP---HMCDLCGARFKKSSALLQHRPIHTGERHICPVCGRGF 863
V+ R H+ + YP +RP H+C+L + ++ +H HIC V
Sbjct: 364 VVEARRHILAILQDYPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYE 423
Query: 864 TQRGAMKKHVST 875
+ G + K V+T
Sbjct: 424 AKSGRVNKGVAT 435
>pdb|1J9Z|A Chain A, Cypor-W677g
pdb|1J9Z|B Chain B, Cypor-W677g
Length = 622
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 808 VINIRNHMRQV-HLYPEVRP---HMCDLCGARFKKSSALLQHRPIHTGERHICPVCGRGF 863
V+ R H+ + YP +RP H+C+L + ++ +H HIC V
Sbjct: 364 VVEARRHILAILQDYPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYE 423
Query: 864 TQRGAMKKHVST 875
+ G + K V+T
Sbjct: 424 AKSGRVNKGVAT 435
>pdb|1AMO|A Chain A, Three-Dimensional Structure Of Nadph-Cytochrome P450
Reductase: Prototype For Fmn-And Fad-Containing Enzymes
pdb|1AMO|B Chain B, Three-Dimensional Structure Of Nadph-Cytochrome P450
Reductase: Prototype For Fmn-And Fad-Containing Enzymes
Length = 615
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 808 VINIRNHMRQV-HLYPEVRP---HMCDLCGARFKKSSALLQHRPIHTGERHICPVCGRGF 863
V+ R H+ + YP +RP H+C+L + ++ +H HIC V
Sbjct: 357 VVEARRHILAILQDYPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYE 416
Query: 864 TQRGAMKKHVST 875
+ G + K V+T
Sbjct: 417 AKSGRVNKGVAT 428
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEK 120
K + C CGK + +L H+RVHTGEK
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIH 144
EKPF C+ CG +FS SLF H H
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSH 35
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
K + C CGK FS LT H HT EKP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,068,504
Number of Sequences: 62578
Number of extensions: 1150786
Number of successful extensions: 6087
Number of sequences better than 100.0: 206
Number of HSP's better than 100.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2684
Number of HSP's gapped (non-prelim): 2885
length of query: 919
length of database: 14,973,337
effective HSP length: 108
effective length of query: 811
effective length of database: 8,214,913
effective search space: 6662294443
effective search space used: 6662294443
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)