RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy367
(919 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 168 bits (427), Expect = 5e-48
Identities = 71/181 (39%), Positives = 94/181 (51%), Gaps = 5/181 (2%)
Query: 51 SLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLT 110
S + EK + C ECGK F S L H++ H K + C CGK FS +LT
Sbjct: 8 SSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLT 66
Query: 111 VHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHL 170
H+R HTGEKP+ C CGKSFSQ ++L H+ HT + Y C C K F + + L +H
Sbjct: 67 RHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHT-GEKPYACPECGKSFSQLAHLRAHQ 125
Query: 171 KTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCNLCNASFKRPGHLKQHGKT 229
+TH+ +PY+C C SF H R H+ +PY+C C SF R L H +T
Sbjct: 126 RTHTGEKPYKCPECGKSFSREDNLHTHQRT--HTGEKPYKCPECGKSFSRRDALNVHQRT 183
Query: 230 H 230
H
Sbjct: 184 H 184
Score = 146 bits (371), Expect = 2e-40
Identities = 62/140 (44%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
Query: 49 KYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTN 108
L H R HT EK + C ECGK F L RH++ H K + C CGK FS N
Sbjct: 34 SDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR-THTGEKPYKCPECGKSFSQRAN 92
Query: 109 LTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTS 168
L H+R HTGEKP+ C CGKSFSQ + L H+ HT + Y+C C K F R L +
Sbjct: 93 LRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT-GEKPYKCPECGKSFSREDNLHT 151
Query: 169 HLKTHSDLRPYECDICNASF 188
H +TH+ +PY+C C SF
Sbjct: 152 HQRTHTGEKPYKCPECGKSF 171
Score = 142 bits (360), Expect = 6e-39
Identities = 71/250 (28%), Positives = 98/250 (39%), Gaps = 64/250 (25%)
Query: 103 FSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFR 162
++ + GEKP+ C CGKSFS+ L H+ HT + Y+C C K F
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHT-GEKPYKCPECGKSFSD 61
Query: 163 NSKLTSHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCNLCNASFKRPG 221
LT H +TH+ +PY+C C SF + H R H+ +PY C C SF +
Sbjct: 62 KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRT--HTGEKPYACPECGKSFSQLA 119
Query: 222 HLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITWGVDMVRYQCPMCQIVLKRKDT 281
HL+ H +TH E Y+CP C R+D
Sbjct: 120 HLRAHQRTHTGEKP-------------------------------YKCPECGKSFSREDN 148
Query: 282 LRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAA 341
L H + HTGEK C + CGK+FS + L
Sbjct: 149 LHTHQRTHTGEKPYKCPE-----------------------------CGKSFSRRDALNV 179
Query: 342 HKKTHSGDKP 351
H++TH+G K
Sbjct: 180 HQRTHTGKKT 189
Score = 130 bits (330), Expect = 7e-35
Identities = 68/190 (35%), Positives = 98/190 (51%), Gaps = 17/190 (8%)
Query: 278 RKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKR--HLKSVHLKI----KDLCCDMCGK 331
+ L GEK C +CGK +F R HL + H + K C CGK
Sbjct: 5 GSSSSVAQAALEPGEKPYACPECGK------SFSRSDHL-AEHQRTHTGEKPYKCPECGK 57
Query: 332 AFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKK 391
+FS + +L H++TH+G+KPY C CGKSF+Q A+L+ H T H K + C +C K
Sbjct: 58 SFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRT-HTGEKP--YACPECGKS 114
Query: 392 FYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKK 451
F + + L AH + HT E+ C C SF ++ + H+R HT E+P+ C C +F +
Sbjct: 115 FSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR-THTGEKPYKCPECGKSFSR 173
Query: 452 SDHLKRHSKT 461
D L H +T
Sbjct: 174 RDALNVHQRT 183
Score = 125 bits (317), Expect = 4e-33
Identities = 68/243 (27%), Positives = 96/243 (39%), Gaps = 64/243 (26%)
Query: 130 SFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFK 189
S SS + + Y C C K F R+ L H +TH+ +PY+C C SF
Sbjct: 2 SEFGSSSSVAQAALEP-GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFS 60
Query: 190 TNYERKKH-RIYVHSETRPYQCNLCNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAK 248
+ +H R H+ +PY+C C SF + +L+ H +TH E
Sbjct: 61 DKKDLTRHQRT--HTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKP------------- 105
Query: 249 RKENLDSYQITWGVDMVRYQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVY 308
Y CP C + LR H + HTGEK C +
Sbjct: 106 ------------------YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPE--------- 138
Query: 309 AFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLK 368
CGK+FS + NL H++TH+G+KPY C CGKSF++ +L
Sbjct: 139 --------------------CGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALN 178
Query: 369 YHH 371
H
Sbjct: 179 VHQ 181
Score = 116 bits (294), Expect = 4e-30
Identities = 45/95 (47%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 51 SLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLT 110
+L+ H R HT EK + C ECGK F + LR H++ H K + C CGK FS NL
Sbjct: 92 NLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR-THTGEKPYKCPECGKSFSREDNLH 150
Query: 111 VHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
H+R HTGEKP+ C CGKSFS+ +L +H+ HT
Sbjct: 151 THQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHT 185
Score = 97.9 bits (245), Expect = 2e-23
Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 4/130 (3%)
Query: 332 AFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKK 391
+ ++ A G+KPY C CGKSF+++ L H T H K ++C +C K
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRT-HTGEK--PYKCPECGKS 58
Query: 392 FYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKK 451
F L H + HT E+ C C SF ++ H+R HT E+P+AC C +F +
Sbjct: 59 FSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQR-THTGEKPYACPECGKSFSQ 117
Query: 452 SDHLKRHSKT 461
HL+ H +T
Sbjct: 118 LAHLRAHQRT 127
Score = 82.1 bits (204), Expect = 5e-18
Identities = 31/73 (42%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 49 KYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTN 108
L+ H R HT EK + C ECGK F L H++ H K + C CGK FS
Sbjct: 118 LAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR-THTGEKPYKCPECGKSFSRRDA 176
Query: 109 LTVHKRVHTGEKP 121
L VH+R HTG+K
Sbjct: 177 LNVHQRTHTGKKT 189
Score = 67.5 bits (166), Expect = 5e-13
Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 9/111 (8%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGK---HVINIRNHMRQVHLYP 822
E P+ACP+CGK +++ L H T G++ P C CGK ++ H R H
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRTHTGEK--PYKCPECGKSFSDKKDLTRHQR-TH--T 73
Query: 823 EVRPHMCDLCGARFKKSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
+P+ C CG F + + L H+ HTGE+ + CP CG+ F+Q ++ H
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH 124
Score = 66.7 bits (164), Expect = 9e-13
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 9/111 (8%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGK---HVINIRNHMRQVHLYP 822
E P+ CP+CGK ++ K L H T G++ P C CGK N+R H R H
Sbjct: 47 EKPYKCPECGKSFSDKKDLTRHQRTHTGEK--PYKCPECGKSFSQRANLRAHQR-TH--T 101
Query: 823 EVRPHMCDLCGARFKKSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
+P+ C CG F + + L H+ HTGE+ + CP CG+ F++ + H
Sbjct: 102 GEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH 152
Score = 65.2 bits (160), Expect = 3e-12
Identities = 39/111 (35%), Positives = 62/111 (55%), Gaps = 9/111 (8%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGK---HVINIRNHMRQVHLYP 822
E P+ CP+CGK ++++++L H T G++ P C CGK + ++R H R H
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTHTGEK--PYACPECGKSFSQLAHLRAHQR-TH--T 129
Query: 823 EVRPHMCDLCGARFKKSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
+P+ C CG F + L H+ HTGE+ + CP CG+ F++R A+ H
Sbjct: 130 GEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
Score = 52.4 bits (127), Expect = 8e-08
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 20/84 (23%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQ 673
C +CG+ F L H+R H+ E Y+C CGK F + + H +R H
Sbjct: 108 CPECGKSFSQLAHLRAHQR-THTGEKPYKCPECGKSFSREDNLHTH-QRTHT-------- 157
Query: 674 REPRPPAKPDSEKPFKCNLCGTGF 697
EKP+KC CG F
Sbjct: 158 ----------GEKPYKCPECGKSF 171
Score = 51.7 bits (125), Expect = 1e-07
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGK---HVINIRNHMRQVHLYP 822
E P+ACP+CGK +++ + L H T G++ P C CGK N+ H R H
Sbjct: 103 EKPYACPECGKSFSQLAHLRAHQRTHTGEK--PYKCPECGKSFSREDNLHTHQR-THT-- 157
Query: 823 EVRPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C CG F + AL H+ HTG++
Sbjct: 158 GEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 51.3 bits (124), Expect = 2e-07
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 20/84 (23%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQ 673
C +CG+ F + L H+R H+ E Y+C CGK F KK + H +R H
Sbjct: 24 CPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRH-QRTHT-------- 73
Query: 674 REPRPPAKPDSEKPFKCNLCGTGF 697
EKP+KC CG F
Sbjct: 74 ----------GEKPYKCPECGKSF 87
Score = 43.2 bits (103), Expect = 1e-04
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
C +CG+ F L H+R H+ E Y+C CGK F + + H +R H
Sbjct: 136 CPECGKSFSREDNLHTHQR-THTGEKPYKCPECGKSFSRRDALNVH-QRTH 184
Score = 42.4 bits (101), Expect = 2e-04
Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 20/77 (25%)
Query: 621 FYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPA 680
+ + + + E Y C CGK F ++ EH +R H
Sbjct: 3 EFGSSSSVAQAA-LEPGEKPYACPECGKSFSRSDHLAEH-QRTHT--------------- 45
Query: 681 KPDSEKPFKCNLCGTGF 697
EKP+KC CG F
Sbjct: 46 ---GEKPYKCPECGKSF 59
Score = 40.9 bits (97), Expect = 6e-04
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 836 FKKSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
SS+ + + GE+ + CP CG+ F++ + +H
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH 40
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 142 bits (361), Expect = 4e-39
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 13/191 (6%)
Query: 54 NHVRIHTKEKLFICE--ECGKQFVTSSALRRHKKAVHLKIKDHSCD--VCGKVFSCPTNL 109
+ K +IC +CG + + L+ H H K C C K F+ +L
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLC-KHTGEKPFPCKEEGCEKGFTSLHHL 60
Query: 110 TVHKRVHTGEKPFVCE--SCGKSFSQHSSLFIHKMIHT-QRQYRYECS--HCQKKFFRNS 164
T H HTGEK F C+ C F+ +++ H + Y C +C K F +++
Sbjct: 61 TRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHN 120
Query: 165 KLTSHLKTHSDLRPYEC--DICNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGH 222
+L H +H+ PYEC + C+ F K+H VH+ + + C+ K
Sbjct: 121 QLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYPCKKDDSCSFVGKTWTL 179
Query: 223 LKQHGKTHNTE 233
+H + +
Sbjct: 180 YLKHVAECHQD 190
Score = 133 bits (337), Expect = 6e-36
Identities = 56/164 (34%), Positives = 78/164 (47%), Gaps = 12/164 (7%)
Query: 51 SLKNHVRIHTKEKLFICEE--CGKQFVTSSALRRHKKAVHLKIKDHSCD--VCGKVFSCP 106
L+ H+ HT EK F C+E C K F + L RH H K+ +CD C F+
Sbjct: 29 KLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSL-THTGEKNFTCDSDGCDLRFTTK 87
Query: 107 TNLTVHKRVHTGEK--PFVC--ESCGKSFSQHSSLFIHKMIHTQRQYRYECSH--CQKKF 160
N+ H K +VC E+CGK+F +H+ L +H+ HTQ+ YEC H C K+F
Sbjct: 88 ANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQL-PYECPHEGCDKRF 146
Query: 161 FRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSE 204
S+L H K H+ + D C+ KT KH H +
Sbjct: 147 SLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQD 190
Score = 122 bits (308), Expect = 5e-32
Identities = 46/269 (17%), Positives = 76/269 (28%), Gaps = 88/269 (32%)
Query: 112 HKRVHTGEKPFVCES--CGKSFSQHSSLFIHKMIHT-QRQYRYECSHCQKKFFRNSKLTS 168
K + K ++C CG +++++ L H HT ++ + + C+K F LT
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 169 HLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQHGK 228
H TH+ + + CD C+ F ++K+H
Sbjct: 63 HSLTHTGEKNFTCDSDG---------------------------CDLRFTTKANMKKHFN 95
Query: 229 THNTENKGLLEEHVFSCKAKRKENLDSYQITWGVDMVRYQCPM--CQIVLKRKDTLRHHL 286
K + Y C C K+ + L+ H
Sbjct: 96 RF-HNIKICV----------------------------YVCHFENCGKAFKKHNQLKVHQ 126
Query: 287 KLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAAHKKTH 346
HT + C G C K FS + L H+K H
Sbjct: 127 FSHTQQLPYECPHEG---------------------------CDKRFSLPSRLKRHEKVH 159
Query: 347 SGDKPYVCETCGKSFAQNASLKYHHDTVH 375
+G ++C H H
Sbjct: 160 AGYPCKKDDSCSFVGKTWTLYLKHVAECH 188
Score = 116 bits (293), Expect = 5e-30
Identities = 47/197 (23%), Positives = 78/197 (39%), Gaps = 25/197 (12%)
Query: 285 HLKLHTGEKFVTCE--QCGKQLHGVYAFKR--HLKSVHLKI----KDLCCD--MCGKAFS 334
L K C CG A+ + L+ HL K C C K F+
Sbjct: 3 EKALPVVYKRYICSFADCGA------AYNKNWKLQ-AHLCKHTGEKPFPCKEEGCEKGFT 55
Query: 335 CQTNLAAHKKTHSGDKPYVCE--TCGKSFAQNASLKYHHDTVHALVKKRLFQCS--QCPK 390
+L H TH+G+K + C+ C F A++K H + +K ++ C C K
Sbjct: 56 SLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR-FHNIKICVYVCHFENCGK 114
Query: 391 KFYRNSKLNAHLKIHTEER--ACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSAT 448
F ++++L H HT++ C + C+ F + +K+H++ VH CS
Sbjct: 115 AFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYPCKKDDSCSFV 173
Query: 449 FKKSDHLKRHSKTAHKE 465
K +H H++
Sbjct: 174 GKTWTLYLKHVAECHQD 190
Score = 76.1 bits (188), Expect = 5e-16
Identities = 37/131 (28%), Positives = 52/131 (39%), Gaps = 14/131 (10%)
Query: 341 AHKKTHSGDKPYVCET--CGKSFAQNASLKYHHDTVHALVKKRLFQCSQ--CPKKFYRNS 396
K K Y+C CG ++ +N L+ H H K F C + C K F
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCK-HTGEK--PFPCKEEGCEKGFTSLH 58
Query: 397 KLNAHLKIHTEERACFCD--ICNHSFKTDNEVKKHKRFVHTDER--PHACQY--CSATFK 450
L H HT E+ CD C+ F T +KKH + + + C + C FK
Sbjct: 59 HLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFN-RFHNIKICVYVCHFENCGKAFK 117
Query: 451 KSDHLKRHSKT 461
K + LK H +
Sbjct: 118 KHNQLKVHQFS 128
Score = 52.2 bits (126), Expect = 9e-08
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 15/119 (12%)
Query: 766 EPPFACPQ--CGKLYNKKSSLYMHLSTKHGKRSEPTVCE--ACGK---HVINIRNHMRQV 818
E PF C + C K + L H T G++ C+ C N++ H
Sbjct: 40 EKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK--NFTCDSDGCDLRFTTKANMKKHFN-R 96
Query: 819 HLYPEVRPHMCDL--CGARFKKSSALLQHRPIHTGER-HIC--PVCGRGFTQRGAMKKH 872
++ ++C CG FKK + L H+ HT + + C C + F+ +K+H
Sbjct: 97 FHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 155
Score = 51.8 bits (125), Expect = 1e-07
Identities = 32/125 (25%), Positives = 48/125 (38%), Gaps = 19/125 (15%)
Query: 766 EPPFACPQ--CGKLYNKKSSLYMHLSTKHGKRSEPTVC--EACGK---HVINIRNHMRQV 818
E F C C + K+++ H + H + VC E CGK ++ H
Sbjct: 70 EKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQF-S 128
Query: 819 HLYPEVRPHMC--DLCGARFKKSSALLQHRPIHTGER----HICPVCGRGFTQRGAMKKH 872
H + P+ C + C RF S L +H +H G C G+ +T KH
Sbjct: 129 H--TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTL---YLKH 183
Query: 873 VSTLH 877
V+ H
Sbjct: 184 VAECH 188
Score = 49.9 bits (120), Expect = 6e-07
Identities = 28/121 (23%), Positives = 43/121 (35%), Gaps = 19/121 (15%)
Query: 766 EPPFAC--PQCGKLYNKKSSLYMHLSTKHGKRSEPTVCE--ACGK---HVINIRNHMRQV 818
+ C CG YNK L HL G++ P C+ C K + ++ H
Sbjct: 10 YKRYICSFADCGAAYNKNWKLQAHLCKHTGEK--PFPCKEEGCEKGFTSLHHLTRHSL-T 66
Query: 819 HLYPEVRPHMCD--LCGARFKKSSALLQHRPIHTGERHI---CPV--CGRGFTQRGAMKK 871
H + CD C RF + + +H + C CG+ F + +K
Sbjct: 67 H--TGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKV 124
Query: 872 H 872
H
Sbjct: 125 H 125
Score = 44.1 bits (105), Expect = 6e-05
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 19/88 (21%)
Query: 612 CACTDCGRMFYNNGALGIHRRAVHSQENTYQC--DPCGKVFPSKKYMREHIKRIHINQGR 669
C +CG+ F + L +H+ H+Q+ Y+C + C K F ++ H +++H
Sbjct: 107 CHFENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRH-EKVH----- 159
Query: 670 VRKQREPRPPAKPDSEKPFKCNLCGTGF 697
A +K C+ G +
Sbjct: 160 ----------AGYPCKKDDSCSFVGKTW 177
Score = 43.7 bits (104), Expect = 7e-05
Identities = 8/41 (19%), Positives = 13/41 (31%)
Query: 48 SKYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVH 88
LK H ++H + C T + +H H
Sbjct: 148 LPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 188
Score = 39.1 bits (92), Expect = 0.002
Identities = 22/90 (24%), Positives = 29/90 (32%), Gaps = 24/90 (26%)
Query: 612 CACTDCGRMFYNNGALGIHRRAVHSQENTYQCD--PCGKVFPSKKYMREHIKRIHINQGR 669
C+ DCG + N L H H+ E + C C K F S ++ H H
Sbjct: 15 CSFADCGAAYNKNWKLQAHLC-KHTGEKPFPCKEEGCEKGFTSLHHLTRH-SLTHT---- 68
Query: 670 VRKQREPRPPAKPDSEKPFKCN--LCGTGF 697
EK F C+ C F
Sbjct: 69 --------------GEKNFTCDSDGCDLRF 84
Score = 35.6 bits (83), Expect = 0.031
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 612 CACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
C C + F L H + VH+ + D C V + +H+ H
Sbjct: 137 CPHEGCDKRFSLPSRLKRHEK-VHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 188
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 127 bits (321), Expect = 4e-34
Identities = 39/140 (27%), Positives = 56/140 (40%), Gaps = 11/140 (7%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVH--------LKIKDHSCDVCGKVFSC 105
+ I + + C + F T L H H C GK F
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKA 74
Query: 106 PTNLTVHKRVHTGEKPFVC--ESCGKSFSQHSSLFIHKMIHT-QRQYRYECSHCQKKFFR 162
L H RVHTGEKPF C CGK F++ +L IHK HT ++ ++ E C ++F
Sbjct: 75 KYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFAN 134
Query: 163 NSKLTSHLKTHSDLRPYECD 182
+S H+ H+ +
Sbjct: 135 SSDRKKHMHVHTSDKSGPSS 154
Score = 107 bits (269), Expect = 3e-27
Identities = 32/148 (21%), Positives = 53/148 (35%), Gaps = 15/148 (10%)
Query: 99 CGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT--------QRQYR 150
G K + + +SC ++FS L H + Y
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 151 YECSHCQKKFFRNSKLTSHLKTHSDLRPYECDI--CNASFKTNYERKKH-RIYVHSETRP 207
EC K F KL +H++ H+ +P+ C C F + K H R H+ +P
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT--HTGEKP 120
Query: 208 YQCNL--CNASFKRPGHLKQHGKTHNTE 233
++C C+ F K+H H ++
Sbjct: 121 FKCEFEGCDRRFANSSDRKKHMHVHTSD 148
Score = 95.8 bits (239), Expect = 4e-23
Identities = 33/143 (23%), Positives = 51/143 (35%), Gaps = 11/143 (7%)
Query: 329 CGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVH------ALVKKRL 382
G + + K ++C ++F+ L H H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 383 FQCSQCPKKFYRNSKLNAHLKIHTEER--ACFCDICNHSFKTDNEVKKHKRFVHTDERPH 440
+C + K F KL H+++HT E+ C C F +K HKR HT E+P
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKR-THTGEKPF 121
Query: 441 ACQY--CSATFKKSDHLKRHSKT 461
C++ C F S K+H
Sbjct: 122 KCEFEGCDRRFANSSDRKKHMHV 144
Score = 89.3 bits (222), Expect = 6e-21
Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 15/142 (10%)
Query: 285 HLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVH--------LKIKDLCCDMCGKAFSCQ 336
+ + + C + ++ H+ H C GK+F +
Sbjct: 16 CKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAK 75
Query: 337 TNLAAHKKTHSGDKPYVC--ETCGKSFAQNASLKYHHDTVHALVKKRLFQCS--QCPKKF 392
L H + H+G+KP+ C CGK FA++ +LK H T H ++ F+C C ++F
Sbjct: 76 YKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT-HT--GEKPFKCEFEGCDRRF 132
Query: 393 YRNSKLNAHLKIHTEERACFCD 414
+S H+ +HT +++
Sbjct: 133 ANSSDRKKHMHVHTSDKSGPSS 154
Score = 71.9 bits (177), Expect = 7e-15
Identities = 31/116 (26%), Positives = 41/116 (35%), Gaps = 13/116 (11%)
Query: 126 SCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSDLRPY------ 179
S G S K I Q C + F +L +H+ P
Sbjct: 2 SSGSSGQPIKQELSCKWIDE-AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 180 ---ECDICNASFKTNYERKKHRIYVHSETRPYQCNL--CNASFKRPGHLKQHGKTH 230
EC SFK Y+ H I VH+ +P+ C C F R +LK H +TH
Sbjct: 61 YWEECPREGKSFKAKYKLVNH-IRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH 115
Score = 64.6 bits (158), Expect = 3e-12
Identities = 33/126 (26%), Positives = 47/126 (37%), Gaps = 18/126 (14%)
Query: 762 INGDEPPFACPQCGKLYNKKSSLYMHLSTKHGKRSE-------PTVCEACGK---HVINI 811
I+ + C + ++ L H++ +H E C GK +
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 812 RNHMRQVHLYPEVRPHMCDL--CGARFKKSSALLQHRPIHTGER-HICPV--CGRGFTQR 866
NH+R VH +P C CG F +S L H+ HTGE+ C C R F
Sbjct: 79 VNHIR-VH--TGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANS 135
Query: 867 GAMKKH 872
KKH
Sbjct: 136 SDRKKH 141
Score = 44.2 bits (105), Expect = 3e-05
Identities = 34/150 (22%), Positives = 47/150 (31%), Gaps = 25/150 (16%)
Query: 553 SFTSSPAMQSHLKKVHNFSNPNRFDCCFCSEIFNLKKDYHEHLKKEHGQTT-SGTRRFQL 611
S +S ++ L C F+ + H+ EH
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 612 CACTDCGRMFYNNGALGIHRRAVHSQENTYQCDP--CGKVFPSKKYMREHIKRIHINQGR 669
C G+ F L H R VH+ E + C CGK+F + ++ H KR H
Sbjct: 63 EECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIH-KRTHTG--- 117
Query: 670 VRKQREPRPPAKPDSEKPFKCNL--CGTGF 697
EKPFKC C F
Sbjct: 118 ---------------EKPFKCEFEGCDRRF 132
Score = 37.3 bits (87), Expect = 0.006
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 832 CGARFKKSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKHVSTLHHLVLPNKSD 886
G+ + L + I + C R F+ + HV+ H+ P +++
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTM-EHVGGPEQNN 57
Score = 37.3 bits (87), Expect = 0.008
Identities = 8/50 (16%), Positives = 13/50 (26%), Gaps = 1/50 (2%)
Query: 416 CNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHLKRHSKTAHKE 465
S + + K + + + C TF L H H
Sbjct: 3 SGSSGQPIKQELSCKW-IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVG 51
Score = 35.3 bits (82), Expect = 0.029
Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 34/153 (22%)
Query: 547 CIKCNASFTSSPAMQSHLKKVH------NFSNPNRFDCCFCSEIFNLKKDYHEHLKKEHG 600
C+ +F++ + +H+ H N +C + F K L H
Sbjct: 28 KKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKY----KLVN-HI 82
Query: 601 QTTSGTRRFQLCACTDCGRMFYNNGALGIHRRAVHSQENTYQCDP--CGKVFPSKKYMRE 658
+ +G + F C CG++F + L IH+R H+ E ++C+ C + F + ++
Sbjct: 83 RVHTGEKPFP-CPFPGCGKIFARSENLKIHKR-THTGEKPFKCEFEGCDRRFANSSDRKK 140
Query: 659 HIKRIHINQGRVRKQREPRPPAKPDSEKPFKCN 691
H +H + +K +
Sbjct: 141 H-MHVHTS------------------DKSGPSS 154
Score = 33.4 bits (77), Expect = 0.13
Identities = 9/82 (10%), Positives = 19/82 (23%), Gaps = 11/82 (13%)
Query: 616 DCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQRE 675
G + + + + C + F + + H+ H+
Sbjct: 2 SSGSSGQPIKQELSCKW-IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVG--------- 51
Query: 676 PRPPAKPDSEKPFKCNLCGTGF 697
P +C G F
Sbjct: 52 -GPEQNNHVCYWEECPREGKSF 72
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 121 bits (307), Expect = 6e-33
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 51 SLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLT 110
+K FIC+ CG+ F S L H++ H + ++CD+C K F +L
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLR 62
Query: 111 VHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECS 154
H+ +H+ EKPF C+ CGK F Q +L +HK +H Q +
Sbjct: 63 DHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTS-SPTAA 105
Score = 88.6 bits (221), Expect = 2e-21
Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 49 KYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTN 108
Y+L H R HT E+ + C+ C K F LR H+ +H K K C CGK F
Sbjct: 30 SYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY-IHSKEKPFKCQECGKGFCQSRT 88
Query: 109 LTVHKRVHTGEKPFVCES 126
L VHK +H S
Sbjct: 89 LAVHKTLHMQTSSPTAAS 106
Score = 88.6 bits (221), Expect = 3e-21
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 30/123 (24%)
Query: 108 NLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLT 167
+ + +K F+C+ CG+ F++ +L IH+ HT
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHT---------------------- 41
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQHG 227
D RPY CDIC+ +F+ + HR +HS+ +P++C C F + L H
Sbjct: 42 -------DERPYTCDICHKAFRRQDHLRDHRY-IHSKEKPFKCQECGKGFCQSRTLAVHK 93
Query: 228 KTH 230
H
Sbjct: 94 TLH 96
Score = 85.9 bits (214), Expect = 2e-20
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 13/97 (13%)
Query: 281 TLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKR--HLKSVHLKI----KDLCCDMCGKAFS 334
+K C+ CG+ F + +L +H + + CD+C KAF
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGR------HFTKSYNL-LIHERTHTDERPYTCDICHKAFR 56
Query: 335 CQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
Q +L H+ HS +KP+ C+ CGK F Q+ +L H
Sbjct: 57 RQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHK 93
Score = 82.1 bits (204), Expect = 5e-19
Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 4/105 (3%)
Query: 338 NLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSK 397
+ + K ++C+ CG+ F ++ +L H H + + C C K F R
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHE-RTHTDERP--YTCDICHKAFRRQDH 60
Query: 398 LNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
L H IH++E+ C C F + HK +H
Sbjct: 61 LRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKT-LHMQTSSPTA 104
Score = 70.9 bits (175), Expect = 4e-15
Identities = 29/96 (30%), Positives = 36/96 (37%), Gaps = 13/96 (13%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKR--HLKSVHLKI--- 321
+ C C + L H + HT E+ TC+ C K AF+R HL H I
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHK------AFRRQDHL-RDHRYIHSK 70
Query: 322 -KDLCCDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
K C CGK F LA HK H +
Sbjct: 71 EKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAAS 106
Score = 53.6 bits (130), Expect = 5e-09
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGK---HVINIRNHMRQVHLYP 822
+ F C CG+ + K +L +H T +R P C+ C K ++R+H +H
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDER--PYTCDICHKAFRRQDHLRDHRY-IH--S 69
Query: 823 EVRPHMCDLCGARFKKSSALLQHRPIHTGER 853
+ +P C CG F +S L H+ +H
Sbjct: 70 KEKPFKCQECGKGFCQSRTLAVHKTLHMQTS 100
Score = 51.3 bits (124), Expect = 4e-08
Identities = 31/84 (36%), Positives = 38/84 (45%), Gaps = 20/84 (23%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQ 673
C CGR F + L IH R H+ E Y CD C K F + ++R+H + IH
Sbjct: 20 CKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDH-RYIHS-------- 69
Query: 674 REPRPPAKPDSEKPFKCNLCGTGF 697
EKPFKC CG GF
Sbjct: 70 ----------KEKPFKCQECGKGF 83
Score = 50.9 bits (123), Expect = 5e-08
Identities = 27/134 (20%), Positives = 43/134 (32%), Gaps = 32/134 (23%)
Query: 164 SKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHL 223
S + + + C C F +Y H H++ RPY C++C+ +F+R HL
Sbjct: 3 SGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHL 61
Query: 224 KQHGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITWGVDMVRYQCPMCQIVLKRKDTLR 283
+ H H+ E ++C C + TL
Sbjct: 62 RDHRYIHSKEKP-------------------------------FKCQECGKGFCQSRTLA 90
Query: 284 HHLKLHTGEKFVTC 297
H LH T
Sbjct: 91 VHKTLHMQTSSPTA 104
Score = 47.4 bits (114), Expect = 9e-07
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 396 SKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHL 455
S + ++ C C F + H+R HTDERP+ C C F++ DHL
Sbjct: 3 SGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHL 61
Query: 456 KRH 458
+ H
Sbjct: 62 RDH 64
Score = 45.1 bits (108), Expect = 4e-06
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 20/78 (25%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQ 673
C C + F L HR +HS+E ++C CGK F + + H K +H+
Sbjct: 48 CDICHKAFRRQDHLRDHRY-IHSKEKPFKCQECGKGFCQSRTLAVH-KTLHM-------- 97
Query: 674 REPRPPAKPDSEKPFKCN 691
Sbjct: 98 ----------QTSSPTAA 105
Score = 40.1 bits (95), Expect = 3e-04
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 20/71 (28%)
Query: 627 LGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEK 686
R + + C CG+ F + H +R H E+
Sbjct: 5 SSGGRL-PSKTKKEFICKFCGRHFTKSYNLLIH-ERTHT------------------DER 44
Query: 687 PFKCNLCGTGF 697
P+ C++C F
Sbjct: 45 PYTCDICHKAF 55
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 123 bits (311), Expect = 7e-33
Identities = 50/182 (27%), Positives = 72/182 (39%), Gaps = 42/182 (23%)
Query: 62 EKLFICEECGKQFVTSSALRRH--KKAVHLKIKDHSCDVCG-----KVFSCPTNLTVHKR 114
E + C ++F + L H + +H + K+ C G + F L VH R
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 115 VHTGEKPFVC--ESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKT 172
HTGEKP C E C KS+S+ +L H HT
Sbjct: 61 RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGE------------------------- 95
Query: 173 HSDLRPYEC--DICNASFKTNYERKKHRIYVHSETRPYQCNL--CNASFKRPGHLKQHGK 228
+PY C + C+ +F +R KH+ HS +PY C L C + P L++H K
Sbjct: 96 ----KPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Query: 229 TH 230
T
Sbjct: 152 TV 153
Score = 115 bits (291), Expect = 4e-30
Identities = 47/146 (32%), Positives = 68/146 (46%), Gaps = 15/146 (10%)
Query: 43 SRQHLSKYSLKNHV---RIHTKEKLFICEECG-----KQFVTSSALRRHKKAVHLKIKDH 94
S++ S+ L +H+ IH + K F+C G + F L H + H K H
Sbjct: 10 SQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR-RHTGEKPH 68
Query: 95 SCDV--CGKVFSCPTNLTVHKRVHTGEKPFVCE--SCGKSFSQHSSLFIHKM-IHT-QRQ 148
C C K +S NL H R HTGEKP++CE C K+FS S H+ H+ ++
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128
Query: 149 YRYECSHCQKKFFRNSKLTSHLKTHS 174
Y + C K++ S L H+KT
Sbjct: 129 YVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 93.0 bits (232), Expect = 3e-22
Identities = 43/204 (21%), Positives = 74/204 (36%), Gaps = 64/204 (31%)
Query: 267 YQCPMCQIVLKRKDTLRHHLK---LHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKD 323
+ C ++ L HH+ +H K C G
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG---------------------- 41
Query: 324 LCCDMCGKAFSCQTNLAAHKKTHSGDKPYVC--ETCGKSFAQNASLKYHHDTVHALVKKR 381
C + F Q L H + H+G+KP+ C E C KS+++ +LK
Sbjct: 42 --CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLK------------- 86
Query: 382 LFQCSQCPKKFYRNSKLNAHLKIHTEER--ACFCDICNHSFKTDNEVKKHKRFVHTDERP 439
HL+ HT E+ C + C+ +F ++ KH+ H++E+P
Sbjct: 87 ------------------THLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128
Query: 440 HACQY--CSATFKKSDHLKRHSKT 461
+ C+ C+ + L++H KT
Sbjct: 129 YVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 80.3 bits (199), Expect = 9e-18
Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 10/123 (8%)
Query: 350 KPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQC-----PKKFYRNSKLNAHLKI 404
+ C + F L +H ++ H +++ F C + F L H++
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 405 HTEER--ACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQY--CSATFKKSDHLKRHSK 460
HT E+ C + C S+ +K H R HT E+P+ C++ CS F + +H
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRLENLKTHLR-SHTGEKPYMCEHEGCSKAFSNASDRAKHQN 120
Query: 461 TAH 463
H
Sbjct: 121 RTH 123
Score = 76.9 bits (190), Expect = 1e-16
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 15/128 (11%)
Query: 119 EKPFVCESCGKSFSQHSSLFIH---KMIHT-QRQYRYE---CSHCQKKFFRNSKLTSHLK 171
E + C + F L H + IH ++++ CS + F L H++
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 172 THSDLRPYECDI--CNASFKTNYERKKH-RIYVHSETRPYQCN--LCNASFKRPGHLKQH 226
H+ +P++C C S+ K H R H+ +PY C C+ +F +H
Sbjct: 61 RHTGEKPHKCTFEGCRKSYSRLENLKTHLRS--HTGEKPYMCEHEGCSKAFSNASDRAKH 118
Query: 227 -GKTHNTE 233
+TH+ E
Sbjct: 119 QNRTHSNE 126
Score = 74.9 bits (185), Expect = 7e-16
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 51 SLKNHVRIHTKEKLFICEE--CGKQFVTSSALRRHKKAVHLKIKDHSCDV--CGKVFSCP 106
+LK H+R HT EK ++CE C K F +S +H+ H K + C + C K ++ P
Sbjct: 84 NLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDP 143
Query: 107 TNLTVHKRVHTG 118
++L H + G
Sbjct: 144 SSLRKHVKTVHG 155
Score = 63.4 bits (155), Expect = 7e-12
Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 17/126 (13%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKRSE-PTVCEACG--------KHVINIRNHMR 816
E C + ++ + L H++++H VC G K + HMR
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 817 QVHLYPEVRPHMCDL--CGARFKKSSALLQHRPIHTGER-HIC--PVCGRGFTQRGAMKK 871
H E +PH C C + + L H HTGE+ ++C C + F+ K
Sbjct: 61 -RHT-GE-KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAK 117
Query: 872 HVSTLH 877
H + H
Sbjct: 118 HQNRTH 123
Score = 43.7 bits (104), Expect = 4e-05
Identities = 33/156 (21%), Positives = 50/156 (32%), Gaps = 26/156 (16%)
Query: 547 CIKCNASFTSSPAMQSHLKKVHNFSNPNRFDCCFCSEIFNLKK-DYHEHLKKEHGQTTSG 605
C+ F S + H+ H F C + L+ L H + +G
Sbjct: 6 WDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVV-HMRRHTG 64
Query: 606 TRRFQLCACTDCGRMFYNNGALGIHRRAVHSQENTYQC--DPCGKVFPSKKYMREHIKRI 663
+ + C C + + L H R H+ E Y C + C K F + +H R
Sbjct: 65 EKPHK-CTFEGCRKSYSRLENLKTHLR-SHTGEKPYMCEHEGCSKAFSNASDRAKHQNRT 122
Query: 664 HINQGRVRKQREPRPPAKPDSEKPFKCNL--CGTGF 697
H N EKP+ C L C +
Sbjct: 123 HSN------------------EKPYVCKLPGCTKRY 140
Score = 42.2 bits (100), Expect = 2e-04
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 13/95 (13%)
Query: 766 EPPFACP--QCGKLYNKKSSLYMHLSTKHGKRSEPTVCE--ACGK---HVINIRNHMRQV 818
E P C C K Y++ +L HL + G++ P +CE C K + + H +
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEK--PYMCEHEGCSKAFSNASDRAKHQNRT 122
Query: 819 HLYPEVRPHMCDL--CGARFKKSSALLQHRPIHTG 851
H +P++C L C R+ S+L +H G
Sbjct: 123 HS--NEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 39.9 bits (94), Expect = 0.001
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 408 ERACFCDICNHSFKTDNEVKKHKRF--VHTDERPHACQYCSAT-----FKKSDHLKRHSK 460
E C D C+ F + ++ H +H + + C + + FK L H +
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 461 T 461
Sbjct: 61 R 61
Score = 38.0 bits (89), Expect = 0.003
Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 28/95 (29%)
Query: 612 CACTDCGRMFYNNGALGIHRRA--VHSQENTYQCDPCG-----KVFPSKKYMREHIKRIH 664
C C + F + L H + +H + + C G + F ++ + H+ R H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM-RRH 62
Query: 665 INQGRVRKQREPRPPAKPDSEKPFKCNL--CGTGF 697
EKP KC C +
Sbjct: 63 TG------------------EKPHKCTFEGCRKSY 79
Score = 36.8 bits (86), Expect = 0.010
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 16/57 (28%)
Query: 638 ENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFKCNLCG 694
E + D C + F S++ + HI HI+ K F C+ G
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGE----------------RKEFVCHWGG 41
Score = 36.8 bits (86), Expect = 0.010
Identities = 36/230 (15%), Positives = 61/230 (26%), Gaps = 79/230 (34%)
Query: 437 ERPHACQYCSATFKKSDHLKRHSKTAHKEMYQSEDIDQQTILLDPRTYVHPYVPYQGDPH 496
E CS F + L H
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHH-------------------------------------- 22
Query: 497 DLKKISISRVHTRKKELLVSSTCAQQDPEPLQSASIEVITPNADPSQNLFCIKCNASFTS 556
I+ +H +KE C C + F +
Sbjct: 23 ----INSEHIHGERKEF----VCHWGG-----------------------CSRELRPFKA 51
Query: 557 SPAMQSHLKKVHNFSNPNRFDCCFCSEIFNLKKDYHEHLKKEHGQTTSGTRRFQLCACTD 616
+ H + H P++ C + ++ E+LK H ++ +G + + C
Sbjct: 52 QYMLVVH-MRRHTGEKPHKCTFEGCRKSYS----RLENLKT-HLRSHTGEKPYM-CEHEG 104
Query: 617 CGRMFYNNGALGIHRRAVHSQENTYQCDP--CGKVFPSKKYMREHIKRIH 664
C + F N H+ HS E Y C C K + +R+H +
Sbjct: 105 CSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH-VKTV 153
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 116 bits (293), Expect = 6e-31
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 57 RIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVH 116
+ +KL+ C+ CGK F S RH +HL ++ + C VCGK F +L H ++H
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Query: 117 TGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTS 168
TG KP+ C C K F S H+ + + YE + ++ S +S
Sbjct: 61 TGIKPYECNICAKRFMWRDSF--HRHVTS-CTKSYEAAKAEQNTTEASGPSS 109
Score = 99.8 bits (250), Expect = 3e-25
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 49 KYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTN 108
K H+ +H + + C CGK+F L H K +H IK + C++C K F +
Sbjct: 22 KSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAKRFMWRDS 80
Query: 109 LTVHKRVHTGEKPFVCESCGKSFSQHSSL 137
H+ V + K + ++ ++ S
Sbjct: 81 F--HRHVTSCTKSYEAAKAEQNTTEASGP 107
Score = 82.1 bits (204), Expect = 6e-19
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 289 HTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAAHKKTHSG 348
+G+K C+ CGK RH S+HL ++ C +CGK F + +L H K H+G
Sbjct: 5 SSGDKLYPCQ-CGKSFTHKSQRDRH-MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62
Query: 349 DKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNA 400
KPY C C K F S H V + K ++ ++ + S ++
Sbjct: 63 IKPYECNICAKRFMWRDSF---HRHVTSCTKS--YEAAKAEQNTTEASGPSS 109
Score = 77.5 bits (192), Expect = 2e-17
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 329 CGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQC 388
CGK+F+ ++ H H G +PY C CGK F L H +H +K ++C+ C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM-KIHTGIKP--YECNIC 71
Query: 389 PKKFYRNSKLNAHLKIHTEERACFCDICNHSF 420
K+F H + + ++ +
Sbjct: 72 AKRFMWRDSF--HRHVTSCTKSYEAAKAEQNT 101
Score = 77.1 bits (191), Expect = 3e-17
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Query: 344 KTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHLK 403
SGDK Y C+ CGKSF + H ++H ++ + C C KKF L H+K
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHM-SMHLGLRP--YGCGVCGKKFKMKHHLVGHMK 58
Query: 404 IHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHL 455
IHT + C+IC F + H+ V + + + ++
Sbjct: 59 IHTGIKPYECNICAKRFMWRDSF--HRH-VTSCTKSYEAAKAEQNTTEASGP 107
Score = 74.0 bits (183), Expect = 4e-16
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 15/96 (15%)
Query: 278 RKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKR--HLKSVHLKI----KDLCCDMCGK 331
K H+ +H G + C CGK FK HL H+KI K C++C K
Sbjct: 21 HKSQRDRHMSMHLGLRPYGCGVCGK------KFKMKHHL-VGHMKIHTGIKPYECNICAK 73
Query: 332 AFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASL 367
F + + H+ S K Y ++ + +
Sbjct: 74 RFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGP 107
Score = 71.3 bits (176), Expect = 4e-15
Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 33/114 (28%)
Query: 114 RVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTH 173
+G+K + C+ CGKSF+ S H +H
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHL---------------------------- 33
Query: 174 SDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCNLCNASFKRPGHLKQH 226
LRPY C +C FK + H +I H+ +PY+CN+C F +H
Sbjct: 34 -GLRPYGCGVCGKKFKMKHHLVGHMKI--HTGIKPYECNICAKRFMWRDSFHRH 84
Score = 55.1 bits (134), Expect = 2e-09
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 12/105 (11%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGK---HVINIRNHMRQVHLYP 822
+ + C QCGK + KS H+S G R P C CGK ++ HM+ +H
Sbjct: 8 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLR--PYGCGVCGKKFKMKHHLVGHMK-IH--T 61
Query: 823 EVRPHMCDLCGARFKKSSALLQHRPIHTGER-HICPVCGRGFTQR 866
++P+ C++C RF + +H + + + + + T+
Sbjct: 62 GIKPYECNICAKRFMWRDSFHRH--VTSCTKSYEAAKAEQNTTEA 104
Score = 46.3 bits (111), Expect = 2e-06
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 20/82 (24%)
Query: 616 DCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQRE 675
CG+ F + H +H Y C CGK F K ++ H +IH
Sbjct: 14 QCGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGH-MKIHT---------- 61
Query: 676 PRPPAKPDSEKPFKCNLCGTGF 697
KP++CN+C F
Sbjct: 62 --------GIKPYECNICAKRF 75
Score = 45.1 bits (108), Expect = 6e-06
Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 22/84 (26%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQ 673
C CG+ F L H + +H+ Y+C+ C K F + + +
Sbjct: 40 CGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAKRFMWRDSF---HRHVTS-------- 87
Query: 674 REPRPPAKPDSEKPFKCNLCGTGF 697
K ++
Sbjct: 88 ----------CTKSYEAAKAEQNT 101
Score = 37.0 bits (87), Expect = 0.003
Identities = 3/27 (11%), Positives = 9/27 (33%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALR 81
H + + K + + + +S
Sbjct: 82 HRHVTSCTKSYEAAKAEQNTTEASGPS 108
Score = 32.8 bits (76), Expect = 0.12
Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 20/64 (31%)
Query: 634 VHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFKCNLC 693
S + Y C CGK F K H +H+ +P+ C +C
Sbjct: 4 GSSGDKLYPCQ-CGKSFTHKSQRDRH-MSMHL------------------GLRPYGCGVC 43
Query: 694 GTGF 697
G F
Sbjct: 44 GKKF 47
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 116 bits (293), Expect = 8e-31
Identities = 48/125 (38%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 61 KEKLFIC--EECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTG 118
+ + C + C K F +SA+R+H H + H C CGK F + L H+ VHTG
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLH-THGP-RVHVCAECGKAFVESSKLKRHQLVHTG 59
Query: 119 EKPFVC--ESCGKSFSQHSSLFIHKMIHT-QRQYRYECSHCQKKFFRNSKLTSHLKTHSD 175
EKPF C E CGK FS +L H IHT R Y C KKF +++ L SH+ TH+
Sbjct: 60 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 119
Query: 176 LRPYE 180
+ +
Sbjct: 120 AKNNQ 124
Score = 112 bits (282), Expect = 3e-29
Identities = 40/99 (40%), Positives = 57/99 (57%), Gaps = 6/99 (6%)
Query: 51 SLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDV--CGKVFSCPTN 108
+++ H+ H ++ +C ECGK FV SS L+RH+ VH K C CGK FS N
Sbjct: 22 AMRKHLHTHG-PRVHVCAECGKAFVESSKLKRHQL-VHTGEKPFQCTFEGCGKRFSLDFN 79
Query: 109 LTVHKRVHTGEKPFVCES--CGKSFSQHSSLFIHKMIHT 145
L H R+HTG++P+VC C K F+Q ++L H + H
Sbjct: 80 LRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 91.4 bits (228), Expect = 6e-22
Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 11/119 (9%)
Query: 119 EKPFVC--ESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSDL 176
+ C + C K F +S++ H H R + C+ C K F +SKL H H+
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTHGPR--VHVCAECGKAFVESSKLKRHQLVHTGE 60
Query: 177 RPYECDI--CNASFKTNYERKKH-RIYVHSETRPYQCNL--CNASFKRPGHLKQHGKTH 230
+P++C C F ++ + H RI H+ RPY C CN F + +LK H TH
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRI--HTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 81.4 bits (202), Expect = 1e-18
Identities = 38/137 (27%), Positives = 57/137 (41%), Gaps = 37/137 (27%)
Query: 329 CGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQC 388
C K F + + H TH G + +VC CGK+F ++
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVES------------------------ 47
Query: 389 PKKFYRNSKLNAHLKIHTEER--ACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQY-- 444
SKL H +HT E+ C + C F D ++ H R +HT +RP+ C +
Sbjct: 48 -------SKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR-IHTGDRPYVCPFDG 99
Query: 445 CSATFKKSDHLKRHSKT 461
C+ F +S +LK H T
Sbjct: 100 CNKKFAQSTNLKSHILT 116
Score = 80.6 bits (200), Expect = 3e-18
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 21/129 (16%)
Query: 292 EKFVTC--EQCGKQLHGVYAFKR--HLKSVHLKI---KDLCCDMCGKAFSCQTNLAAHKK 344
+ + C + C K F+ ++ HL + C CGKAF + L H+
Sbjct: 3 PRTIACPHKGCTK------MFRDNSAMRK-HLHTHGPRVHVCAECGKAFVESSKLKRHQL 55
Query: 345 THSGDKPYVC--ETCGKSFAQNASLKYHHDTVHALVKKRLFQCS--QCPKKFYRNSKLNA 400
H+G+KP+ C E CGK F+ + +L+ H H R + C C KKF +++ L +
Sbjct: 56 VHTGEKPFQCTFEGCGKRFSLDFNLRTHVRI-HT--GDRPYVCPFDGCNKKFAQSTNLKS 112
Query: 401 HLKIHTEER 409
H+ H + +
Sbjct: 113 HILTHAKAK 121
Score = 66.8 bits (164), Expect = 2e-13
Identities = 41/118 (34%), Positives = 54/118 (45%), Gaps = 16/118 (13%)
Query: 765 DEPPFACPQ--CGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGK---HVINIRNHMRQVH 819
+ ACP C K++ S++ HL T HG R VC CGK ++ H VH
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHT-HGPR--VHVCAECGKAFVESSKLKRHQL-VH 57
Query: 820 LYPEVRPHMCDL--CGARFKKSSALLQHRPIHTGER-HICPV--CGRGFTQRGAMKKH 872
E +P C CG RF L H IHTG+R ++CP C + F Q +K H
Sbjct: 58 T-GE-KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
Score = 63.7 bits (156), Expect = 3e-12
Identities = 38/181 (20%), Positives = 52/181 (28%), Gaps = 66/181 (36%)
Query: 177 RPYECDI--CNASFKTNYERKKH-RIYVHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
R C C F+ N +KH H R + C C +F LK+H H E
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHT--HGP-RVHVCAECGKAFVESSKLKRHQLVHTGE 60
Query: 234 NKGLLEEHVFSCKAKRKENLDSYQITWGVDMVRYQCPM--CQIVLKRKDTLRHHLKLHTG 291
+QC C LR H+++HTG
Sbjct: 61 KP-------------------------------FQCTFEGCGKRFSLDFNLRTHVRIHTG 89
Query: 292 EKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAAHKKTHSGDKP 351
++ C D C K F+ TNL +H TH+ K
Sbjct: 90 DRPYVCPF---------------------------DGCNKKFAQSTNLKSHILTHAKAKN 122
Query: 352 Y 352
Sbjct: 123 N 123
Score = 52.9 bits (128), Expect = 2e-08
Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 27/72 (37%)
Query: 51 SLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLT 110
+L+ HVRIHT ++ ++C D C K F+ TNL
Sbjct: 79 NLRTHVRIHTGDRPYVCPF---------------------------DGCNKKFAQSTNLK 111
Query: 111 VHKRVHTGEKPF 122
H H K
Sbjct: 112 SHILTHAKAKNN 123
Score = 48.7 bits (117), Expect = 4e-07
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVC--EACGK---HVINIRNHMRQVHL 820
C +CGK + + S L H G++ P C E CGK N+R H+R +H
Sbjct: 32 PRVHVCAECGKAFVESSKLKRHQLVHTGEK--PFQCTFEGCGKRFSLDFNLRTHVR-IHT 88
Query: 821 YPEVRPHMCDL--CGARFKKSSALLQHRPIHTGER 853
RP++C C +F +S+ L H H +
Sbjct: 89 --GDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 41.3 bits (98), Expect = 1e-04
Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 23/88 (26%)
Query: 612 CACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVR 671
C C +MF +N A+ H H + C CGK F ++ H + +H
Sbjct: 8 CPHKGCTKMFRDNSAMRKHLH-THG-PRVHVCAECGKAFVESSKLKRH-QLVHT------ 58
Query: 672 KQREPRPPAKPDSEKPFKCNL--CGTGF 697
EKPF+C CG F
Sbjct: 59 ------------GEKPFQCTFEGCGKRF 74
Score = 40.2 bits (95), Expect = 4e-04
Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 24/88 (27%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDP--CGKVFPSKKYMREHIKRIHINQGRVR 671
C +CG+ F + L H+ VH+ E +QC CGK F +R H RIH
Sbjct: 37 CAECGKAFVESSKLKRHQL-VHTGEKPFQCTFEGCGKRFSLDFNLRTH-VRIHT------ 88
Query: 672 KQREPRPPAKPDSEKPFKCNL--CGTGF 697
++P+ C C F
Sbjct: 89 ------------GDRPYVCPFDGCNKKF 104
Score = 36.3 bits (85), Expect = 0.008
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 411 CFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
C C F+ ++ ++KH H R H C C F +S LKRH
Sbjct: 8 CPHKGCTKMFRDNSAMRKHLH-THG-PRVHVCAECGKAFVESSKLKRHQLV 56
Score = 32.9 bits (76), Expect = 0.15
Identities = 13/63 (20%), Positives = 17/63 (26%), Gaps = 22/63 (34%)
Query: 637 QENTYQCDP--CGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFKCNLCG 694
+ T C C K+F MR+H H + C CG
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKH-LHTH-------------------GPRVHVCAECG 41
Query: 695 TGF 697
F
Sbjct: 42 KAF 44
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 114 bits (289), Expect = 3e-30
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 59 HTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR---V 115
+ C C K+F++ L+ H + H K C CGK + NL H+ +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNR-KHTGEKPFECPKCGKCYFRKENLLEHEARNCM 60
Query: 116 HTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSH-LKTHS 174
+ E+ F C C ++F + L +H + HT Y+CS C ++F + L SH +K HS
Sbjct: 61 NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEM-PYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 112 bits (283), Expect = 2e-29
Identities = 36/100 (36%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 49 KYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKK--AVHLKIKDHSCDVCGKVFSCP 106
KY LK H R HT EK F C +CGK + L H+ ++ + +C VC + F
Sbjct: 20 KYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRR 79
Query: 107 TNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKM-IHT 145
L +H HTGE P+ C SC + F Q L H + +H+
Sbjct: 80 MELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 107 bits (270), Expect = 1e-27
Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIH---KMIHTQRQ 148
C C K F L VH R HTGEKPF C CGK + + +L H ++ Q
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQ 65
Query: 149 YRYECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHS 203
+ CS CQ+ F R +L H+ +H+ PY+C C+ F + + H I +HS
Sbjct: 66 -VFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 99.9 bits (250), Expect = 5e-25
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
Query: 116 HTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSH---LKT 172
+G C +C K F L +H HT + +EC C K +FR L H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHT-GEKPFECPKCGKCYFRKENLLEHEARNCM 60
Query: 173 HSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCNLCNASFKRPGHLKQH-GKTH 230
+ + + C +C +F+ E + H H+ PY+C+ C+ F + L+ H K H
Sbjct: 61 NRSEQVFTCSVCQETFRRRMELRLHMVS--HTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 93.3 bits (233), Expect = 1e-22
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHH--DTVHALVKKRLF 383
C C K F + L H + H+G+KP+ C CGK + + +L H + ++ + F
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV--F 67
Query: 384 QCSQCPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDER 438
CS C + F R +L H+ HT E C C+ F +++ H +H+
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 88.3 bits (220), Expect = 6e-21
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRH--LKSVHLKIKDL 324
+CP C K L+ H + HTGEK C +CGK H ++ +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 325 CCDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVH 375
C +C + F + L H +H+G+ PY C +C + F Q L+ H +H
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 82.6 bits (205), Expect = 7e-19
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 346 HSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAH---L 402
SG C TC K F LK H+ H K F+C +C K ++R L H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRK-HTGEKP--FECPKCGKCYFRKENLLEHEARN 58
Query: 403 KIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHLKRHSKTA 462
++ E+ C +C +F+ E++ H HT E P+ C CS F + L+ H
Sbjct: 59 CMNRSEQVFTCSVCQETFRRRMELRLHMV-SHTGEMPYKCSSCSQQFMQKKDLQSHMIKL 117
Query: 463 H 463
H
Sbjct: 118 H 118
Score = 69.8 bits (172), Expect = 2e-14
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 6/116 (5%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGK---HVINIRNHMRQVHLYP 822
CP C K + K L +H G++ P C CGK N+ H + +
Sbjct: 5 SSGVECPTCHKKFLSKYYLKVHNRKHTGEK--PFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 823 EVRPHMCDLCGARFKKSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKHVSTLH 877
+ C +C F++ L H HTGE + C C + F Q+ ++ H+ LH
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 66.8 bits (164), Expect = 2e-13
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 49 KYSLKNHVR---IHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSC 105
K +L H ++ E++F C C + F LR H H + C C + F
Sbjct: 48 KENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMV-SHTGEMPYKCSSCSQQFMQ 106
Query: 106 PTNLTVHK-RVHTGEK 120
+L H ++H+G
Sbjct: 107 KKDLQSHMIKLHSGPS 122
Score = 52.1 bits (126), Expect = 2e-08
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 17/84 (20%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQ 673
C C + F + L +H R H+ E ++C CGK + K+ + EH R +N+
Sbjct: 10 CPTCHKKFLSKYYLKVHNR-KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS----- 63
Query: 674 REPRPPAKPDSEKPFKCNLCGTGF 697
E+ F C++C F
Sbjct: 64 -----------EQVFTCSVCQETF 76
Score = 50.2 bits (121), Expect = 1e-07
Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 21/86 (24%)
Query: 614 CTDCGRMFYNNGALGIHRR--AVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVR 671
C CG+ ++ L H ++ E + C C + F + +R H H
Sbjct: 38 CPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLH-MVSHT------ 90
Query: 672 KQREPRPPAKPDSEKPFKCNLCGTGF 697
E P+KC+ C F
Sbjct: 91 ------------GEMPYKCSSCSQQF 104
Score = 47.5 bits (114), Expect = 1e-06
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
C+ C F L +H H+ E Y+C C + F KK ++ H+ ++H
Sbjct: 69 CSVCQETFRRRMELRLHMV-SHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 37.5 bits (88), Expect = 0.004
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 19/63 (30%)
Query: 635 HSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFKCNLCG 694
S + +C C K F SK Y++ H R H EKPF+C CG
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVH-NRKHT------------------GEKPFECPKCG 42
Query: 695 TGF 697
+
Sbjct: 43 KCY 45
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 113 bits (285), Expect = 1e-29
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 60 TKEKLFICEE--CGKQFVTSSALRRHKKAVHLKIKDHSCDV--CGKVFSCPTNLTVHKRV 115
++++ F+C C K++ S L+ H + H K + CD C + FS L H+R
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQRR 60
Query: 116 HTGEKPFVCESCGKSFSQHSSLFIHKMIHT-QRQYRYECSHCQKKFFRNSKLTSHLKTH 173
HTG KPF C++C + FS+ L H HT ++ + CQKKF R+ +L H H
Sbjct: 61 HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 109 bits (276), Expect = 1e-28
Identities = 37/98 (37%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 51 SLKNHVRIHTKEKLFICE--ECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTN 108
L+ H R HT EK + C+ +C ++F S L+RH++ H +K C C + FS +
Sbjct: 23 HLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-RHTGVKPFQCKTCQRKFSRSDH 81
Query: 109 LTVHKRVHTGEKPFVCES--CGKSFSQHSSLFIHKMIH 144
L H R HTGEKPF C C K F++ L H +H
Sbjct: 82 LKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 99.1 bits (248), Expect = 9e-25
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 117 TGEKPFVCE--SCGKSFSQHSSLFIHKMIHT-QRQYRYECSHCQKKFFRNSKLTSHLKTH 173
+ ++PF+C C K + + S L +H HT ++ Y+ + C+++F R+ +L H + H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 174 SDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCNL--CNASFKRPGHLKQHGKTH 230
+ ++P++C C F + K H R H+ +P+ C C F R L +H H
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRT--HTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 85.3 bits (212), Expect = 7e-20
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 36/137 (26%)
Query: 329 CGKAFSCQTNLAAHKKTHSGDKPYVCET--CGKSFAQNASLKYHHDTVHALVKKRLFQCS 386
C K + ++L H + H+G+KPY C+ C + F+++ LK H H VK FQC
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTGVKP--FQCK 70
Query: 387 QCPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQY-- 444
C +KF R+ L H + HT E+P +C++
Sbjct: 71 TCQRKFSRSDHLKTHTRTHT-----------------------------GEKPFSCRWPS 101
Query: 445 CSATFKKSDHLKRHSKT 461
C F +SD L RH
Sbjct: 102 CQKKFARSDELVRHHNM 118
Score = 81.0 bits (201), Expect = 2e-18
Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 18/126 (14%)
Query: 290 TGEKFVTCEQ--CGKQLHGVYAFKRHLKSVHLKI----KDLCCDM--CGKAFSCQTNLAA 341
+ ++ C C K+ Y HL+ H + K CD C + FS L
Sbjct: 2 SEKRPFMCAYPGCNKR----YFKLSHLQM-HSRKHTGEKPYQCDFKDCERRFSRSDQLKR 56
Query: 342 HKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCS--QCPKKFYRNSKLN 399
H++ H+G KP+ C+TC + F+++ LK H T H K F C C KKF R+ +L
Sbjct: 57 HQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT-HTGEKP--FSCRWPSCQKKFARSDELV 113
Query: 400 AHLKIH 405
H +H
Sbjct: 114 RHHNMH 119
Score = 74.9 bits (185), Expect = 3e-16
Identities = 41/174 (23%), Positives = 60/174 (34%), Gaps = 66/174 (37%)
Query: 206 RPYQCN--LCNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITWGVD 263
RP+ C CN + + HL+ H + H E
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKP---------------------------- 36
Query: 264 MVRYQCPM--CQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKI 321
YQC C+ R D L+ H + HTG K C+ C ++
Sbjct: 37 ---YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRK------------------ 75
Query: 322 KDLCCDMCGKAFSCQTNLAAHKKTHSGDKPYVCET--CGKSFAQNASLKYHHDT 373
FS +L H +TH+G+KP+ C C K FA++ L HH+
Sbjct: 76 -----------FSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM 118
Score = 60.6 bits (148), Expect = 3e-11
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 383 FQCSQ--CPKKFYRNSKLNAHLKIHTEER--ACFCDICNHSFKTDNEVKKHKRFVHTDER 438
F C+ C K++++ S L H + HT E+ C C F +++K+H+R HT +
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-RHTGVK 65
Query: 439 PHACQYCSATFKKSDHLKRHSKT 461
P C+ C F +SDHLK H++T
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRT 88
Score = 58.3 bits (142), Expect = 2e-10
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 15/117 (12%)
Query: 766 EPPFACPQ--CGKLYNKKSSLYMHLSTKHGKRSEPTVCEA--CGK---HVINIRNHMRQV 818
+ PF C C K Y K S L MH G++ P C+ C + ++ H R
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEK--PYQCDFKDCERRFSRSDQLKRHQR-R 60
Query: 819 HLYPEVRPHMCDLCGARFKKSSALLQHRPIHTGER-HIC--PVCGRGFTQRGAMKKH 872
H V+P C C +F +S L H HTGE+ C P C + F + + +H
Sbjct: 61 HT--GVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 43.3 bits (103), Expect = 3e-05
Identities = 23/88 (26%), Positives = 31/88 (35%), Gaps = 22/88 (25%)
Query: 612 CACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVR 671
C DC R F + L H+R H+ +QC C + F +++ H R H
Sbjct: 39 CDFKDCERRFSRSDQLKRHQR-RHTGVKPFQCKTCQRKFSRSDHLKTH-TRTHTG----- 91
Query: 672 KQREPRPPAKPDSEKPFKCNL--CGTGF 697
EKPF C C F
Sbjct: 92 -------------EKPFSCRWPSCQKKF 106
Score = 41.4 bits (98), Expect = 1e-04
Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 22/88 (25%)
Query: 612 CACTDCGRMFYNNGALGIHRRAVHSQENTYQCDP--CGKVFPSKKYMREHIKRIHINQGR 669
CA C + ++ L +H R H+ E YQCD C + F ++ H +R H
Sbjct: 9 CAYPGCNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRH-QRRHTG--- 63
Query: 670 VRKQREPRPPAKPDSEKPFKCNLCGTGF 697
KPF+C C F
Sbjct: 64 ---------------VKPFQCKTCQRKF 76
Score = 38.3 bits (90), Expect = 0.002
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Query: 766 EPPFAC--PQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGK---HVINIRNHMRQVHL 820
E P+ C C + +++ L H G + P C+ C + +++ H R H
Sbjct: 34 EKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK--PFQCKTCQRKFSRSDHLKTHTR-TH- 89
Query: 821 YPEVRPHMCDL--CGARFKKSSALLQHRPIH 849
+P C C +F +S L++H +H
Sbjct: 90 -TGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 36.3 bits (85), Expect = 0.007
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDP--CGKVFPSKKYMREHIKRIH 664
C C R F + L H R H+ E + C C K F + H +H
Sbjct: 69 CKTCQRKFSRSDHLKTHTR-THTGEKPFSCRWPSCQKKFARSDELVRH-HNMH 119
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 110 bits (277), Expect = 6e-29
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 59 HTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTG 118
CE CGK F L+ H + H +K + C C + ++L H R+H+
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
E+PF C+ C + S L +H HT
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSHT 88
Score = 109 bits (276), Expect = 9e-29
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRY 151
H C+VCGK FS L H R HTG KP+ C++C + + SSL H IH+ + +
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDER-PF 65
Query: 152 ECSHCQKKFFRNSKLTSHLKTHSDLRPYEC 181
+C C +S+LT HL++H+
Sbjct: 66 KCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 91.3 bits (228), Expect = 2e-22
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 116 HTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSD 175
P CE CGK FS+ L H HT + Y+C C +S L HL+ HSD
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVK-PYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 176 LRPYECDICNASFKTNYERKKH-RIYVHSETRPYQC 210
RP++C IC + + + + H R H+
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRS--HTGDSGPSS 95
Score = 87.9 bits (219), Expect = 3e-21
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 49 KYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTN 108
K LK H+R HT K + C+ C SS+L +H + +H + C +C +
Sbjct: 21 KDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKCQICPYASRNSSQ 79
Query: 109 LTVHKRVHTGEKPFVC 124
LTVH R HTG+
Sbjct: 80 LTVHLRSHTGDSGPSS 95
Score = 87.1 bits (217), Expect = 8e-21
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQC 385
C++CGK FS + L H + H+G KPY C+TC + A ++SL H H+ + F+C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HSDERP--FKC 67
Query: 386 SQCPKKFYRNSKLNAHLKIHTEER 409
CP +S+L HL+ HT +
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDS 91
Score = 79.0 bits (196), Expect = 5e-18
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 345 THSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHLKI 404
+ P+ CE CGK F++ LK H H VK ++C C +S LN HL+I
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRC-HTGVKP--YKCKTCDYAAADSSSLNKHLRI 58
Query: 405 HTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
H++ER C IC ++ + +++ H R HT + +
Sbjct: 59 HSDERPFKCQICPYASRNSSQLTVHLR-SHTGDSGPSS 95
Score = 69.4 bits (171), Expect = 1e-14
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKR--HLKSVHLKI--- 321
++C +C RKD L+ H++ HTG K C+ C A L + HL+I
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDY------AAADSSSL-NKHLRIHSD 61
Query: 322 -KDLCCDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
+ C +C A + L H ++H+GD
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 55.1 bits (134), Expect = 1e-09
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGK---HVINIRNHMRQVHLYP 822
P C CGK +++K L H+ G + P C+ C ++ H+R +H
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGVK--PYKCKTCDYAAADSSSLNKHLR-IH--S 60
Query: 823 EVRPHMCDLCGARFKKSSALLQHRPIHTGER 853
+ RP C +C + SS L H HTG+
Sbjct: 61 DERPFKCQICPYASRNSSQLTVHLRSHTGDS 91
Score = 49.0 bits (118), Expect = 2e-07
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
PH C++CG F + L H HTG + + C C ++ KH
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH 55
Score = 48.6 bits (117), Expect = 2e-07
Identities = 21/84 (25%), Positives = 28/84 (33%), Gaps = 20/84 (23%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQ 673
C CG+ F L H R H+ Y+C C + +H RIH
Sbjct: 11 CEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKH-LRIHS-------- 60
Query: 674 REPRPPAKPDSEKPFKCNLCGTGF 697
E+PFKC +C
Sbjct: 61 ----------DERPFKCQICPYAS 74
Score = 42.4 bits (101), Expect = 3e-05
Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 20/77 (25%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQ 673
C C ++ +L H R +HS E ++C C + + H R H
Sbjct: 39 CKTCDYAAADSSSLNKHLR-IHSDERPFKCQICPYASRNSSQLTVH-LRSHT-------- 88
Query: 674 REPRPPAKPDSEKPFKC 690
+
Sbjct: 89 ----------GDSGPSS 95
Score = 36.2 bits (85), Expect = 0.005
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 19/63 (30%)
Query: 635 HSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFKCNLCG 694
++C+ CGK F K ++ H R H KP+KC C
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTH-MRCHT------------------GVKPYKCKTCD 43
Query: 695 TGF 697
Sbjct: 44 YAA 46
Score = 31.2 bits (72), Expect = 0.26
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 434 HTDERPHACQYCSATFKKSDHLKRHSKT 461
PH C+ C F + D LK H +
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRC 30
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 106 bits (268), Expect = 8e-28
Identities = 35/90 (38%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 59 HTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTG 118
+ CE CGK F L RHK H K +SC VCG F ++ H R H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKL-SHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 60
Query: 119 E--KPFVCESCGKSFSQHSSLFIH-KMIHT 145
KP++C+SCGK FS+ L H K +H+
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 104 bits (263), Expect = 3e-27
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYR- 150
+C++CGK+F +L HK H+GEKP+ C CG F + + H H +
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP 65
Query: 151 YECSHCQKKFFRNSKLTSHLK-THS 174
Y C C K F R L H+K HS
Sbjct: 66 YICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 90.6 bits (226), Expect = 4e-22
Identities = 34/123 (27%), Positives = 47/123 (38%), Gaps = 31/123 (25%)
Query: 289 HTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAAHKKTHSG 348
+G V CE CGK F +L HK +HSG
Sbjct: 2 SSGSSGVACEICGK-----------------------------IFRDVYHLNRHKLSHSG 32
Query: 349 DKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHLK-IHTE 407
+KPY C CG F + + YH + H + + C C K F R LN H+K +H+
Sbjct: 33 EKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Query: 408 ERA 410
+
Sbjct: 92 PSS 94
Score = 86.8 bits (216), Expect = 9e-21
Identities = 32/122 (26%), Positives = 45/122 (36%), Gaps = 29/122 (23%)
Query: 116 HTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSD 175
+G CE CGK F L HK+ H+ + Y C C +F R +++ H+++H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEK-PYSCPVCGLRFKRKDRMSYHVRSHDG 60
Query: 176 LRPYECDICNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQHGK-THNTEN 234
K PY C C F RP HL H K H+ +
Sbjct: 61 -----------------SVGK----------PYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Query: 235 KG 236
G
Sbjct: 94 SG 95
Score = 70.2 bits (173), Expect = 6e-15
Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 31/111 (27%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCC 326
C +C + + L H H+GEK +C
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPV--------------------------- 40
Query: 327 DMCGKAFSCQTNLAAHKKTHSG--DKPYVCETCGKSFAQNASLKYHHDTVH 375
CG F + ++ H ++H G KPY+C++CGK F++ L H VH
Sbjct: 41 --CGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 68.7 bits (169), Expect = 2e-14
Identities = 28/124 (22%), Positives = 38/124 (30%), Gaps = 42/124 (33%)
Query: 346 HSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRL------FQCSQCPKKFYRNSKLN 399
SG CE CGK F L H K + C C +F R +++
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRH---------KLSHSGEKPYSCPVCGLRFKRKDRMS 52
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHLKRHS 459
H++ H +P+ CQ C F + DHL H
Sbjct: 53 YHVRSHDGS---------------------------VGKPYICQSCGKGFSRPDHLNGHI 85
Query: 460 KTAH 463
K H
Sbjct: 86 KQVH 89
Score = 57.5 bits (140), Expect = 2e-10
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGK---HVINIRNHMRQVHLYP 822
AC CGK++ L H + G++ P C CG + H+R H
Sbjct: 5 SSGVACEICGKIFRDVYHLNRHKLSHSGEK--PYSCPVCGLRFKRKDRMSYHVR-SHDGS 61
Query: 823 EVRPHMCDLCGARFKKSSALLQH-RPIHTGER 853
+P++C CG F + L H + +H+G
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 50.2 bits (121), Expect = 7e-08
Identities = 26/84 (30%), Positives = 31/84 (36%), Gaps = 18/84 (21%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQ 673
C CG++F + L H+ HS E Y C CG F K M H R H
Sbjct: 10 CEICGKIFRDVYHLNRHKL-SHSGEKPYSCPVCGLRFKRKDRMSYH-VRSHDGS------ 61
Query: 674 REPRPPAKPDSEKPFKCNLCGTGF 697
KP+ C CG GF
Sbjct: 62 ----------VGKPYICQSCGKGF 75
Score = 48.6 bits (117), Expect = 2e-07
Identities = 33/152 (21%), Positives = 48/152 (31%), Gaps = 63/152 (41%)
Query: 202 HSETRPYQCNLCNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITWG 261
S + C +C F+ HL +H +H+ E
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKP-------------------------- 35
Query: 262 VDMVRYQCPMCQIVLKRKDTLRHHLKLHTGE--KFVTCEQCGKQLHGVYAFKRHLKSVHL 319
Y CP+C + KRKD + +H++ H G K C+
Sbjct: 36 -----YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQS-------------------- 70
Query: 320 KIKDLCCDMCGKAFSCQTNLAAH-KKTHSGDK 350
CGK FS +L H K+ HSG
Sbjct: 71 ---------CGKGFSRPDHLNGHIKQVHSGPS 93
Score = 44.0 bits (105), Expect = 1e-05
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENT--YQCDPCGKVFPSKKYMREHIKRIH 664
C CG F + H R H Y C CGK F ++ HIK++H
Sbjct: 38 CPVCGLRFKRKDRMSYHVR-SHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 36.3 bits (85), Expect = 0.005
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 19/63 (30%)
Query: 635 HSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFKCNLCG 694
S + C+ CGK+F ++ H K H EKP+ C +CG
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRH-KLSHS------------------GEKPYSCPVCG 42
Query: 695 TGF 697
F
Sbjct: 43 LRF 45
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 102 bits (256), Expect = 3e-26
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 62 EKLFIC--EECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGE 119
E+ + C E C ++F S +L RH + +H K C +C + FS +LT H R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 120 KPFVCESCGKSFSQHSSLFIHKMIHT 145
KPF C+ CG+ F++ H IH
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHL 86
Score = 95.6 bits (239), Expect = 6e-24
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 99 CGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQK 158
C + FS +LT H R+HTG+KPF C C ++FS+ L H HT + + C C +
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK-PFACDICGR 70
Query: 159 KFFRNSKLTSHLKTH 173
KF R+ + H K H
Sbjct: 71 KFARSDERKRHTKIH 85
Score = 84.4 bits (210), Expect = 5e-20
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 329 CGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQC 388
C + FS +L H + H+G KP+ C C ++F+++ L H T H K F C C
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKP--FACDIC 68
Query: 389 PKKFYRNSKLNAHLKIHTEER 409
+KF R+ + H KIH ++
Sbjct: 69 GRKFARSDERKRHTKIHLRQK 89
Score = 71.3 bits (176), Expect = 2e-15
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 29/93 (31%)
Query: 278 RKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQT 337
+ +L H+++HTG+K C C + FS
Sbjct: 18 QSGSLTRHIRIHTGQKPFQCRICMRN-----------------------------FSRSD 48
Query: 338 NLAAHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+L H +TH+G+KP+ C+ CG+ FA++ K H
Sbjct: 49 HLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 52.5 bits (127), Expect = 9e-09
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 29/70 (41%)
Query: 51 SLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLT 110
L H+R HT EK F C+ CG++ F+
Sbjct: 49 HLTTHIRTHTGEKPFACDICGRK-----------------------------FARSDERK 79
Query: 111 VHKRVHTGEK 120
H ++H +K
Sbjct: 80 RHTKIHLRQK 89
Score = 52.1 bits (126), Expect = 1e-08
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 766 EPPFACP--QCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGK---HVINIRNHMRQVHL 820
E P+ACP C + +++ SL H+ G++ P C C + ++ H+R H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQK--PFQCRICMRNFSRSDHLTTHIR-TH- 57
Query: 821 YPEVRPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P CD+CG +F +S +H IH ++
Sbjct: 58 -TGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 46.7 bits (112), Expect = 8e-07
Identities = 30/120 (25%), Positives = 45/120 (37%), Gaps = 36/120 (30%)
Query: 177 RPYECDI--CNASFKTNYERKKH-RIYVHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
RPY C + C+ F + +H RI H+ +P+QC +C +F R HL H +TH E
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRI--HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 234 NKGLLEEHVFSCKAKRKENLDSYQITWGVDMVRYQCPMCQIVLKRKDTLRHHLKLHTGEK 293
+ C +C R D + H K+H +K
Sbjct: 61 KP-------------------------------FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 46.3 bits (111), Expect = 1e-06
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 20/86 (23%)
Query: 612 CACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVR 671
C C R F +G+L H R +H+ + +QC C + F ++ H R H
Sbjct: 7 CPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTH-IRTHT------ 58
Query: 672 KQREPRPPAKPDSEKPFKCNLCGTGF 697
EKPF C++CG F
Sbjct: 59 ------------GEKPFACDICGRKF 72
Score = 45.9 bits (110), Expect = 2e-06
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 825 RPHMCDL--CGARFKKSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
RP+ C + C RF +S +L +H IHTG++ C +C R F++ + H
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 53
Score = 39.4 bits (93), Expect = 4e-04
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
C C R F + L H R H+ E + CD CG+ F + H +IH
Sbjct: 37 CRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRH-TKIH 85
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 101 bits (255), Expect = 4e-26
Identities = 34/79 (43%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 67 CEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCES 126
C+ CGK F SS L H +H + + C CGK F +++ H +HTGEKP C+
Sbjct: 4 CKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 127 CGKSFSQHSSLFIHKMIHT 145
CGK+FSQ S+L H HT
Sbjct: 63 CGKAFSQSSNLITHSRKHT 81
Score = 82.5 bits (205), Expect = 2e-19
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQC 385
C +CGK+F + L+ H HS +PY C+ CGK F Q + +K H +H K +C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEK--PHKC 60
Query: 386 SQCPKKFYRNSKLNAHLKIHT 406
C K F ++S L H + HT
Sbjct: 61 QVCGKAFSQSSNLITHSRKHT 81
Score = 67.8 bits (167), Expect = 3e-14
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 122 FVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSDLRPYEC 181
F C+ CGKSF + S+L H +IH+ + Y C +C K+F + S + H H+ +P++C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTR-PYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 182 DICNASF 188
+C +F
Sbjct: 61 QVCGKAF 67
Score = 65.9 bits (162), Expect = 1e-13
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 151 YECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSETRPYQC 210
++C C K F R+S L++HL HSD RPY C C F + KKH +H+ +P++C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTF-IHTGEKPHKC 60
Query: 211 NLCNASFKRPGHLKQHGKTH 230
+C +F + +L H + H
Sbjct: 61 QVCGKAFSQSSNLITHSRKH 80
Score = 60.9 bits (149), Expect = 8e-12
Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 383 FQCSQCPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
F C C K F R+S L+ HL IH++ R C C F +++KKH +HT E+PH C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTF-IHTGEKPHKC 60
Query: 443 QYCSATFKKSDHLKRHSKT 461
Q C F +S +L HS+
Sbjct: 61 QVCGKAFSQSSNLITHSRK 79
Score = 58.6 bits (143), Expect = 5e-11
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 13/88 (14%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKR--HLKSVHLKI--- 321
+ C +C KR TL HL +H+ + C+ CGK F + + H I
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGK------RFHQKSDM-KKHTFIHTG 54
Query: 322 -KDLCCDMCGKAFSCQTNLAAHKKTHSG 348
K C +CGKAFS +NL H + H+G
Sbjct: 55 EKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 50.9 bits (123), Expect = 2e-08
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 352 YVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHLKIHTEERAC 411
+ C+ CGKSF ++++L H +H+ + + C C K+F++ S + H IHT E+
Sbjct: 2 FDCKICGKSFKRSSTLSTHL-LIHSDTRP--YPCQYCGKRFHQKSDMKKHTFIHTGEKPH 58
Query: 412 FCDICNHSFKTDNEVKKHKRFVHT 435
C +C +F + + H R HT
Sbjct: 59 KCQVCGKAFSQSSNLITHSR-KHT 81
Score = 49.7 bits (120), Expect = 6e-08
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 31/105 (29%)
Query: 769 FACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPEVRPHM 828
F C CGK + + S+L HL R P C+ CGK
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTR--PYPCQYCGK---------------------- 37
Query: 829 CDLCGARFKKSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
RF + S + +H IHTGE+ H C VCG+ F+Q + H
Sbjct: 38 ------RFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76
Score = 47.8 bits (115), Expect = 3e-07
Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 20/84 (23%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQ 673
C CG+ F + L H +HS Y C CGK F K M++H IH
Sbjct: 4 CKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHT-------- 53
Query: 674 REPRPPAKPDSEKPFKCNLCGTGF 697
EKP KC +CG F
Sbjct: 54 ----------GEKPHKCQVCGKAF 67
Score = 45.9 bits (110), Expect = 2e-06
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 51 SLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKK 85
+K H IHT EK C+ CGK F SS L H +
Sbjct: 44 DMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSR 78
Score = 40.5 bits (96), Expect = 1e-04
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
C CG+ F+ + H +H+ E ++C CGK F + H R H
Sbjct: 32 CQYCGKRFHQKSDMKKHTF-IHTGEKPHKCQVCGKAFSQSSNLITH-SRKH 80
Score = 38.6 bits (91), Expect = 5e-04
Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 30/86 (34%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPEVR 825
P+ C CGK +++KS + H G+ +
Sbjct: 27 TRPYPCQYCGKRFHQKSDMKKHTFIHTGE------------------------------K 56
Query: 826 PHMCDLCGARFKKSSALLQHRPIHTG 851
PH C +CG F +SS L+ H HTG
Sbjct: 57 PHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 34.7 bits (81), Expect = 0.015
Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 19/58 (32%)
Query: 640 TYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFKCNLCGTGF 697
++ C CGK F + H IH +P+ C CG F
Sbjct: 1 SFDCKICGKSFKRSSTLSTH-LLIHS------------------DTRPYPCQYCGKRF 39
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 100 bits (252), Expect = 1e-25
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 91 IKDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYR 150
+K C +C + FS +LT H R HTGEKPF C+ CG+ F++ H+ I
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHIL--P 58
Query: 151 YECSHCQKKFFRNSKLTSH---LKTH 173
++ +N L + LK
Sbjct: 59 ILEDKVEELLSKNYHLENEVARLKKL 84
Score = 91.0 bits (227), Expect = 3e-22
Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
Query: 63 KLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGEKPF 122
K F C C + F S L H + H K +CD+CG+ F+ H+ + P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQH-ILPI 59
Query: 123 VCESCGKSFSQHSSLFIHK---MIHT 145
+ + + S++ L
Sbjct: 60 LEDKVEELLSKNYHLENEVARLKKLV 85
Score = 84.1 bits (209), Expect = 7e-20
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQC 385
C +C + FS +L H +TH+G+KP+ C+ CG+ FA++ K H D
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI-Q---HILPILE 61
Query: 386 SQCPKKFYRNSKL---NAHLKIHTEER 409
+ + +N L A LK ER
Sbjct: 62 DKVEELLSKNYHLENEVARLKKLVGER 88
Score = 67.1 bits (165), Expect = 5e-14
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 151 YECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSETRPYQC 210
++C C + F R+ LT+H++TH+ +P+ CDIC F + ERK+HR + P
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRD-IQHI-LPILE 61
Query: 211 NLCNASFKRPGHLK---QHGKTH 230
+ + HL+ K
Sbjct: 62 DKVEELLSKNYHLENEVARLKKL 84
Score = 66.4 bits (163), Expect = 1e-13
Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 30/104 (28%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCC 326
+QC +C R D L H++ HTGEK C+ CG++
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK----------------------- 40
Query: 327 DMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
F+ H+ P + + + ++N L+
Sbjct: 41 ------FARSDERKRHRDIQ-HILPILEDKVEELLSKNYHLENE 77
Score = 63.7 bits (156), Expect = 9e-13
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 383 FQCSQCPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
FQC C + F R+ L H++ HT E+ CDIC F +E K+H+ + P
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRD-IQH-ILPILE 61
Query: 443 QYCSATFKKSDHLKRH 458
K+ HL+
Sbjct: 62 DKVEELLSKNYHLENE 77
Score = 51.3 bits (124), Expect = 2e-08
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 824 VRPHMCDLCGARFKKSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
++P C +C F +S L H HTGE+ C +CGR F + K+H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 50.2 bits (121), Expect = 6e-08
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 768 PFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGK---HVINIRNHMRQVHLYPEV 824
PF C C + +++ L H+ T G++ P C+ CG+ + H + +
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEK--PFACDICGRKFARSDERKRHRD-IQ---HI 56
Query: 825 RPHMCDLCGARFKKSSALLQHRP---IHTGER 853
P + D K+ L GER
Sbjct: 57 LPILEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 46.7 bits (112), Expect = 9e-07
Identities = 17/84 (20%), Positives = 24/84 (28%), Gaps = 21/84 (25%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQ 673
C C R F + L H R H+ E + CD CG+ F + H + I
Sbjct: 6 CRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRH-RDIQ--------- 54
Query: 674 REPRPPAKPDSEKPFKCNLCGTGF 697
P +
Sbjct: 55 ----------HILPILEDKVEELL 68
Score = 46.3 bits (111), Expect = 1e-06
Identities = 21/122 (17%), Positives = 38/122 (31%), Gaps = 38/122 (31%)
Query: 176 LRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCNLCNASFKRPGHLKQHGKTHNTEN 234
++P++C IC +F + H R H+ +P+ C++C F R K+H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRT--HTGEKPFACDICGRKFARSDERKRHRDIQ-HIL 57
Query: 235 KGLLEEHVFSCKAKRKENLDSYQITWGVDMVRYQCPMCQIVLKRKDTLRHH---LKLHTG 291
+ +L + L + LK G
Sbjct: 58 P-------------------------------ILEDKVEELLSKNYHLENEVARLKKLVG 86
Query: 292 EK 293
E+
Sbjct: 87 ER 88
Score = 41.7 bits (99), Expect = 5e-05
Identities = 21/148 (14%), Positives = 37/148 (25%), Gaps = 64/148 (43%)
Query: 206 RPYQCNLCNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITWGVDMV 265
+P+QC +C +F R HL H +TH E
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEK------------------------------- 30
Query: 266 RYQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLC 325
+ C +C R D + H + + ++ +
Sbjct: 31 PFACDICGRKFARSDERKRHRDIQH-ILPILEDKVEEL---------------------- 67
Query: 326 CDMCGKAFSCQTNLAAHK---KTHSGDK 350
S +L K G++
Sbjct: 68 -------LSKNYHLENEVARLKKLVGER 88
Score = 35.9 bits (84), Expect = 0.006
Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 4/53 (7%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIK--RIH 664
C CGR F + HR + D ++ ++ + +
Sbjct: 34 CDICGRKFARSDERKRHRD-IQH-ILPILEDKVEELLSKNYHLENEVARLKKL 84
Score = 32.5 bits (75), Expect = 0.10
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 19/57 (33%)
Query: 641 YQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFKCNLCGTGF 697
+QC C + F ++ H R H EKPF C++CG F
Sbjct: 4 FQCRICMRNFSRSDHLTTH-IRTHTG------------------EKPFACDICGRKF 41
Score = 27.5 bits (62), Expect = 4.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 438 RPHACQYCSATFKKSDHLKRHSKT 461
+P C+ C F +SDHL H +T
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRT 25
Score = 27.5 bits (62), Expect = 5.0
Identities = 4/22 (18%), Positives = 7/22 (31%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
P + +L +K L
Sbjct: 56 ILPILEDKVEELLSKNYHLENE 77
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 98.8 bits (247), Expect = 4e-25
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 108 NLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYR---YECSHCQKKFFRNS 164
+ R HTGEKP+ C C K+F Q L +H + + + CS C K F R +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 165 KLTSHLKTHSDLRPYECDICNASF 188
+ H + E + S
Sbjct: 62 TMARHADNCAGPDGVEGENSGPSS 85
Score = 96.1 bits (240), Expect = 3e-24
Identities = 23/85 (27%), Positives = 29/85 (34%), Gaps = 5/85 (5%)
Query: 51 SLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVH----LKIKDHSCDVCGKVFSCP 106
S + R HT EK + C C K F L H K + C CGK F+
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFK-RYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 107 TNLTVHKRVHTGEKPFVCESCGKSF 131
+ H G E+ G S
Sbjct: 61 NTMARHADNCAGPDGVEGENSGPSS 85
Score = 74.5 bits (184), Expect = 2e-16
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Query: 338 NLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHA-LVKKRLFQCSQCPKKFYRNS 396
+ + +TH+G+KPY C C K+F Q L H H F CS+C K F R +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 397 KLNAHLKIHTEERACFCDICNHSF 420
+ H + S
Sbjct: 62 TMARHADNCAGPDGVEGENSGPSS 85
Score = 73.3 bits (181), Expect = 4e-16
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 17/91 (18%)
Query: 281 TLRHHLKLHTGEKFVTCEQCGKQLHGVYAF--KRHLKSVHLKI--------KDLCCDMCG 330
+ + HTGEK C C K F K+ L +H K C CG
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDK------TFRQKQLL-DMHFKRYHDPNFVPAAFVCSKCG 54
Query: 331 KAFSCQTNLAAHKKTHSGDKPYVCETCGKSF 361
K F+ + +A H +G E G S
Sbjct: 55 KTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 50.2 bits (121), Expect = 5e-08
Identities = 19/99 (19%), Positives = 27/99 (27%), Gaps = 27/99 (27%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPEVR 825
E P+AC C K + +K L MH H P
Sbjct: 13 EKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVP--------------------------A 46
Query: 826 PHMCDLCGARFKKSSALLQHRPIHTGER-HICPVCGRGF 863
+C CG F + + + +H G G
Sbjct: 47 AFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 47.1 bits (113), Expect = 6e-07
Identities = 14/88 (15%), Positives = 22/88 (25%), Gaps = 24/88 (27%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENT----YQCDPCGKVFPSKKYMREHIKRIHINQGR 669
C+ C + F L +H + + N + C CGK F + M H
Sbjct: 18 CSHCDKTFRQKQLLDMHFK-RYHDPNFVPAAFVCSKCGKTFTRRNTMARH-ADNCA---- 71
Query: 670 VRKQREPRPPAKPDSEKPFKCNLCGTGF 697
+ G
Sbjct: 72 --------------GPDGVEGENSGPSS 85
Score = 45.2 bits (108), Expect = 3e-06
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHI-----CPVCGRGFTQRGAMKKH 872
+P+ C C F++ L H + + C CG+ FT+R M +H
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 38.3 bits (90), Expect = 8e-04
Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 16/73 (21%)
Query: 625 GALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDS 684
G+ G R H+ E Y C C K F K+ + H + + +
Sbjct: 1 GSSGSSGR-THTGEKPYACSHCDKTFRQKQLLDMH-FKRYHDP--------------NFV 44
Query: 685 EKPFKCNLCGTGF 697
F C+ CG F
Sbjct: 45 PAAFVCSKCGKTF 57
Score = 36.0 bits (84), Expect = 0.005
Identities = 3/26 (11%), Positives = 6/26 (23%)
Query: 49 KYSLKNHVRIHTKEKLFICEECGKQF 74
+ ++ H E G
Sbjct: 60 RNTMARHADNCAGPDGVEGENSGPSS 85
Score = 33.7 bits (78), Expect = 0.037
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRHSKTAHKE 465
R HT E+P+AC +C TF++ L H K H
Sbjct: 5 SSGR-THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP 41
Score = 32.9 bits (76), Expect = 0.074
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 842 LLQHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
HTGE+ + C C + F Q+ + H
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMH 34
Score = 27.1 bits (61), Expect = 6.7
Identities = 16/123 (13%), Positives = 28/123 (22%), Gaps = 53/123 (43%)
Query: 685 EKPFKCNLCGTGFESDRQVSGH-RVNCAFFVLKPEEAKLTGELTATTPDKESFVIMPKLK 743
EKP+ C+ C F + + H +
Sbjct: 13 EKPYACSHCDKTFRQKQLLDMHFKRY-------------HDPNFVPAA------------ 47
Query: 744 KKKKEDKIGTVRQSKLGKINGDEPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEA 803
F C +CGK + +++++ H G E
Sbjct: 48 -------------------------FVCSKCGKTFTRRNTMARHADNCAGPD--GVEGEN 80
Query: 804 CGK 806
G
Sbjct: 81 SGP 83
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 91.1 bits (227), Expect = 3e-22
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 74 FVTSSALRRHKKAVHLKIKDHSCDV--CGKVFSCPTNLTVHKRVHTGEKPFVC--ESCGK 129
+S ++ H CD C KV++ ++L H R HTGEKP+ C E C
Sbjct: 3 SGSSGPDLEKRRI-------HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDW 55
Query: 130 SFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSD 175
F++ L H HT ++C C + F R+ L H+K H +
Sbjct: 56 RFARSDELTRHYRKHT-GAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 77.7 bits (192), Expect = 1e-17
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 130 SFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSDLRPYECDI--CNAS 187
S + R + + C K + ++S L +HL+TH+ +PY+C C+
Sbjct: 2 SSGSSGPDLEKR-----RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWR 56
Query: 188 FKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
F + E +H H+ +P+QC +CN SF R HL H K H
Sbjct: 57 FARSDELTRHY-RKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 74.2 bits (183), Expect = 3e-16
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 329 CGKAFSCQTNLAAHKKTHSGDKPYVC--ETCGKSFAQNASLKYHHDTVHALVKKRLFQCS 386
C K ++ ++L AH +TH+G+KPY C E C FA++ L H+ H K FQC
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAKP--FQCG 79
Query: 387 QCPKKFYRNSKLNAHLKIHT 406
C + F R+ L H+K H
Sbjct: 80 VCNRSFSRSDHLALHMKRHQ 99
Score = 71.1 bits (175), Expect = 3e-15
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 379 KKRLFQCS--QCPKKFYRNSKLNAHLKIHTEER--ACFCDICNHSFKTDNEVKKHKRFVH 434
K+R+ C C K + ++S L AHL+ HT E+ C + C+ F +E+ +H R H
Sbjct: 12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR-KH 70
Query: 435 TDERPHACQYCSATFKKSDHLKRHSKT 461
T +P C C+ +F +SDHL H K
Sbjct: 71 TGAKPFQCGVCNRSFSRSDHLALHMKR 97
Score = 61.9 bits (151), Expect = 5e-12
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 15/99 (15%)
Query: 278 RKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKI----KDLCCDM--CGK 331
++H + C K VY HLK+ HL+ K C C
Sbjct: 5 SSGPDLEKRRIHYCDY----PGCTK----VYTKSSHLKA-HLRTHTGEKPYKCTWEGCDW 55
Query: 332 AFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
F+ L H + H+G KP+ C C +SF+++ L H
Sbjct: 56 RFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALH 94
Score = 48.8 bits (117), Expect = 2e-07
Identities = 29/106 (27%), Positives = 39/106 (36%), Gaps = 29/106 (27%)
Query: 771 CPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPEVRPHMCD 830
P C K+Y K S L HL T G++ P C G
Sbjct: 20 YPGCTKVYTKSSHLKAHLRTHTGEK--PYKCTWEG------------------------- 52
Query: 831 LCGARFKKSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKHVST 875
C RF +S L +H HTG + C VC R F++ + H+
Sbjct: 53 -CDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97
Score = 46.5 bits (111), Expect = 1e-06
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 268 QCPMCQIVLKRKDTLRHHLKLHTGEKFVTC--EQCGKQLHGVYAFKRHLKSVHLKIKDLC 325
P C V + L+ HL+ HTGEK C E C + RH + H K
Sbjct: 19 DYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAKPFQ 77
Query: 326 CDMCGKAFSCQTNLAAHKKTH 346
C +C ++FS +LA H K H
Sbjct: 78 CGVCNRSFSRSDHLALHMKRH 98
Score = 42.2 bits (100), Expect = 5e-05
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 819 HLYPEVRPHMCDL--CGARFKKSSALLQHRPIHTGER-HIC--PVCGRGFTQRGAMKKHV 873
+ R H CD C + KSS L H HTGE+ + C C F + + +H
Sbjct: 8 PDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHY 67
Query: 874 ST 875
Sbjct: 68 RK 69
Score = 38.4 bits (90), Expect = 0.001
Identities = 26/120 (21%), Positives = 37/120 (30%), Gaps = 38/120 (31%)
Query: 186 ASFKTNYERKKHRIYVHSETRPYQCNL--CNASFKRPGHLKQHGKTHNTENKGLLEEHVF 243
S ++ + R R + C+ C + + HLK H +TH E +
Sbjct: 1 GSSGSSGPDLEKR-------RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKP-------Y 46
Query: 244 SCKAKRKENLDSYQITWGVDMVRYQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQ 303
C TW C R D L H + HTG K C C +
Sbjct: 47 KC-------------TW---------EGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRS 84
Score = 37.2 bits (87), Expect = 0.002
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 14/111 (12%)
Query: 552 ASFTSSPAMQSHLKKVHNFSNPNRFDCCFCSEIFNLKKDYHEHLKKEHGQTTSGTRRFQL 611
S SS +++H P C++++ HLK H +T +G + ++
Sbjct: 1 GSSGSSGPDLEK-RRIHYCDYPG------CTKVYTKS----SHLKA-HLRTHTGEKPYK- 47
Query: 612 CACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKR 662
C C F + L H R H+ +QC C + F ++ H+KR
Sbjct: 48 CTWEGCDWRFARSDELTRHYR-KHTGAKPFQCGVCNRSFSRSDHLALHMKR 97
Score = 34.1 bits (79), Expect = 0.035
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 22/93 (23%)
Query: 607 RRFQLCACTDCGRMFYNNGALGIHRRAVHSQENTYQC--DPCGKVFPSKKYMREHIKRIH 664
RR C C +++ + L H R H+ E Y+C + C F + H R H
Sbjct: 13 RRIHYCDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRH-YRKH 70
Query: 665 INQGRVRKQREPRPPAKPDSEKPFKCNLCGTGF 697
KPF+C +C F
Sbjct: 71 TG------------------AKPFQCGVCNRSF 85
Score = 28.0 bits (63), Expect = 4.3
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 834 ARFKKSSALLQHRPIHTGERHICPVCGRGFTQRGAMKKHVST 875
S L+ R IH + P C + +T+ +K H+ T
Sbjct: 1 GSSGSSGPDLEKRRIHYCD---YPGCTKVYTKSSHLKAHLRT 39
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 90.3 bits (225), Expect = 4e-22
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 59 HTKEKLFIC--EECGKQFVTSSALRRHKKAVHLKIKDHSCD--VCGKVFSCPTNLTVHKR 114
+ C CG+ F L HKK H+ K SC CGK F+ +L H +
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 115 VHTGEKPFVCESCGKSF 131
+H+ + ++CE G S
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 76.0 bits (188), Expect = 3e-17
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 116 HTGEKPFVC--ESCGKSFSQHSSLFIHKMI-HT-QRQYRYECSHCQKKFFRNSKLTSHLK 171
+G C CG+ FS L HK H Q+ + C K F L H+K
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 172 THSDLRPYECDICNASF 188
HSD R Y C+ S
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 71.0 bits (175), Expect = 2e-15
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 289 HTGEKFVTC--EQCGKQLHGVYAFKRHLKSVHLKIKDLCCD--MCGKAFSCQTNLAAHKK 344
+G + C CG+ H K H+ K C CGK+F+ + +L H K
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 345 THSGDKPYVCETCGKSF 361
HS + Y+CE G S
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 61.8 bits (151), Expect = 3e-12
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 346 HSGDKPYVC--ETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQ--CPKKFYRNSKLNAH 401
SG C CG+ F+ L +H H + ++ F C + C K F L H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH--IHQKSFSCPEPACGKSFNFKKHLKEH 59
Query: 402 LKIHTEERACFCDICNHSF 420
+K+H++ R C+ S
Sbjct: 60 MKLHSDTRDYICEFSGPSS 78
Score = 52.2 bits (126), Expect = 9e-09
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 21/88 (23%)
Query: 612 CACTDCGRMFYNNGALGIHRRAVHSQENTYQCD--PCGKVFPSKKYMREHIKRIHINQGR 669
C CGR+F N L H++ H + ++ C CGK F KK+++EH ++H
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH-MKLHS---- 64
Query: 670 VRKQREPRPPAKPDSEKPFKCNLCGTGF 697
+ + C G
Sbjct: 65 --------------DTRDYICEFSGPSS 78
Score = 50.6 bits (122), Expect = 3e-08
Identities = 18/103 (17%), Positives = 30/103 (29%), Gaps = 34/103 (33%)
Query: 766 EPPFAC--PQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPE 823
C P CG++++ + L +H + H
Sbjct: 5 SSGMPCDFPGCGRIFSNRQYL---------------------------NHHKKYQH--IH 35
Query: 824 VRPHMCD--LCGARFKKSSALLQHRPIHTGER-HICPVCGRGF 863
+ C CG F L +H +H+ R +IC G
Sbjct: 36 QKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 46.4 bits (111), Expect = 8e-07
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 405 HTEER--ACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQY--CSATFKKSDHLKRHSK 460
+ C C F + HK++ H ++ +C C +F HLK H K
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 461 T 461
Sbjct: 62 L 62
Score = 44.5 bits (106), Expect = 5e-06
Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 177 RPYECDI--CNASFKTNYERKKHRIYVHSETRPYQCN--LCNASFKRPGHLKQHGKTHNT 232
CD C F H+ Y H + + C C SF HLK+H K H+
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65
Query: 233 E 233
Sbjct: 66 T 66
Score = 42.5 bits (101), Expect = 2e-05
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 825 RPHMCDL--CGARFKKSSALLQH-RPIHTGER-HICP--VCGRGFTQRGAMKKH 872
CD CG F L H + H ++ CP CG+ F + +K+H
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH 59
Score = 39.8 bits (94), Expect = 2e-04
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 51 SLKNHVRIHTKEKLFICEECGKQF 74
LK H+++H+ + +ICE G
Sbjct: 55 HLKEHMKLHSDTRDYICEFSGPSS 78
Score = 30.6 bits (70), Expect = 0.39
Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 2/32 (6%)
Query: 434 HTDERPHACQY--CSATFKKSDHLKRHSKTAH 463
+ C + C F +L H K H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH 33
Score = 27.9 bits (63), Expect = 2.9
Identities = 17/101 (16%), Positives = 25/101 (24%), Gaps = 37/101 (36%)
Query: 550 CNASFTSSPAMQSHLKKVHNFSNPNRFDCCFCSEIFNLKKDYHEHLKKEHGQTTSGTRRF 609
C F++ + H K H + F
Sbjct: 15 CGRIFSNRQYLNHHKKYQH-----------------------------------IHQKSF 39
Query: 610 QLCACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVF 650
C CG+ F L H + +HS Y C+ G
Sbjct: 40 S-CPEPACGKSFNFKKHLKEHMK-LHSDTRDYICEFSGPSS 78
Score = 26.7 bits (60), Expect = 7.2
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 3/32 (9%)
Query: 849 HTGER-HICPV--CGRGFTQRGAMKKHVSTLH 877
+G C CGR F+ R + H H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH 33
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 90.2 bits (225), Expect = 4e-22
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 77 SSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSS 136
S + R + + + + CD CGK FS ++L+ H+R HTGEKP+ C+ CGK+F Q S
Sbjct: 3 SGSSGRSEW-QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSH 61
Query: 137 LFIHKMIHT 145
L H +HT
Sbjct: 62 LIGHHRVHT 70
Score = 87.5 bits (218), Expect = 3e-21
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 108 NLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLT 167
+ + + + C+ CGKSFS S L H+ HT + Y+C C K F + S L
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEK-PYKCDECGKAFIQRSHLI 63
Query: 168 SHLKTHSDLRPYE 180
H + H+ P
Sbjct: 64 GHHRVHTGSGPSS 76
Score = 84.0 bits (209), Expect = 5e-20
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 51 SLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLT 110
S + + + C+ECGK F SS L +H++ H K + CD CGK F ++L
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLI 63
Query: 111 VHKRVHTGEKPF 122
H RVHTG P
Sbjct: 64 GHHRVHTGSGPS 75
Score = 67.1 bits (165), Expect = 4e-14
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 29/91 (31%)
Query: 281 TLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLA 340
+ + C++CGK +FS ++L+
Sbjct: 5 SSGRSEWQQRERRRYKCDECGK-----------------------------SFSHSSDLS 35
Query: 341 AHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
H++TH+G+KPY C+ CGK+F Q + L HH
Sbjct: 36 KHRRTHTGEKPYKCDECGKAFIQRSHLIGHH 66
Score = 64.4 bits (158), Expect = 3e-13
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 338 NLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSK 397
+ + + Y C+ CGKSF+ ++ L H T H K ++C +C K F + S
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRT-HTGEKP--YKCDECGKAFIQRSH 61
Query: 398 LNAHLKIHTEER 409
L H ++HT
Sbjct: 62 LIGHHRVHTGSG 73
Score = 47.4 bits (114), Expect = 3e-07
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
R + CD CG F SS L +HR HTGE+ + C CG+ F QR + H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 46.7 bits (112), Expect = 6e-07
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 395 NSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDH 454
+ E R CD C SF +++ KH+R HT E+P+ C C F + H
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSH 61
Query: 455 LKRH 458
L H
Sbjct: 62 LIGH 65
Score = 42.4 bits (101), Expect = 2e-05
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
C +CG+ F ++ L HRR H+ E Y+CD CGK F + ++ H R+H
Sbjct: 21 CDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGH-HRVH 69
Score = 40.5 bits (96), Expect = 9e-05
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 20/74 (27%)
Query: 624 NGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPD 683
+G+ G + Y+CD CGK F + +H +R H
Sbjct: 3 SGSSGRSEW-QQRERRRYKCDECGKSFSHSSDLSKH-RRTHT------------------ 42
Query: 684 SEKPFKCNLCGTGF 697
EKP+KC+ CG F
Sbjct: 43 GEKPYKCDECGKAF 56
Score = 39.3 bits (93), Expect = 2e-04
Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 30/88 (34%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPEVR 825
+ C +CGK ++ S L H T G++
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEK------------------------------ 45
Query: 826 PHMCDLCGARFKKSSALLQHRPIHTGER 853
P+ CD CG F + S L+ H +HTG
Sbjct: 46 PYKCDECGKAFIQRSHLIGHHRVHTGSG 73
Score = 34.3 bits (80), Expect = 0.014
Identities = 20/97 (20%), Positives = 29/97 (29%), Gaps = 33/97 (34%)
Query: 197 HRIYVHSETRPYQCNLCNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSY 256
E R Y+C+ C SF L +H +TH E
Sbjct: 10 EWQ--QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKP--------------------- 46
Query: 257 QITWGVDMVRYQCPMCQIVLKRKDTLRHHLKLHTGEK 293
Y+C C ++ L H ++HTG
Sbjct: 47 ----------YKCDECGKAFIQRSHLIGHHRVHTGSG 73
Score = 32.8 bits (76), Expect = 0.063
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
+ + + R + C C +F S L +H +T
Sbjct: 8 RSEW-QQRERRRYKCDECGKSFSHSSDLSKHRRT 40
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 89.4 bits (223), Expect = 6e-22
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 77 SSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSS 136
H + K + CD C F NL HK VHTGEKP+ C CG F++ ++
Sbjct: 2 GHHHHHHSH-MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPAN 60
Query: 137 LFIHKMIHT 145
L H IH+
Sbjct: 61 LKTHTRIHS 69
Score = 87.1 bits (217), Expect = 4e-21
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 51 SLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLT 110
+H + +K + C+ C F L HK VH K + C++CG F+ P NL
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPANLK 62
Query: 111 VHKRVHTGEKPF 122
H R+H+GEKP+
Sbjct: 63 THTRIHSGEKPY 74
Score = 69.0 bits (170), Expect = 8e-15
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 29/90 (32%)
Query: 282 LRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAA 341
HH + +K C++C +F + NLA+
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQA-----------------------------SFRYKGNLAS 35
Query: 342 HKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
HK H+G+KPY C CG F + A+LK H
Sbjct: 36 HKTVHTGEKPYRCNICGAQFNRPANLKTHT 65
Score = 67.1 bits (165), Expect = 4e-14
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 338 NLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSK 397
+ H DKPY C+ C SF +L H TVH K ++C+ C +F R +
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHK-TVHTGEKP--YRCNICGAQFNRPAN 60
Query: 398 LNAHLKIHTEER 409
L H +IH+ E+
Sbjct: 61 LKTHTRIHSGEK 72
Score = 66.3 bits (163), Expect = 8e-14
Identities = 27/102 (26%), Positives = 37/102 (36%), Gaps = 32/102 (31%)
Query: 108 NLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLT 167
+ H + +KP+ C+ C SF +L HK +HT
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGE-------------------- 43
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPY 208
+PY C+IC A F K H RI HS +PY
Sbjct: 44 ---------KPYRCNICGAQFNRPANLKTHTRI--HSGEKPY 74
Score = 47.4 bits (114), Expect = 4e-07
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 826 PHMCDLCGARFKKSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
P+ CD C A F+ L H+ +HTGE+ + C +CG F + +K H
Sbjct: 17 PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 47.1 bits (113), Expect = 5e-07
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 396 SKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHL 455
+ H + ++ CD C SF+ + HK VHT E+P+ C C A F + +L
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPANL 61
Query: 456 KRHSKT 461
K H++
Sbjct: 62 KTHTRI 67
Score = 42.8 bits (102), Expect = 1e-05
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
C C F G L H+ VH+ E Y+C+ CG F ++ H RIH
Sbjct: 20 CDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPANLKTH-TRIH 68
Score = 40.5 bits (96), Expect = 1e-04
Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 20/71 (28%)
Query: 627 LGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEK 686
H + + Y+CD C F K + H K +H EK
Sbjct: 5 HHHHSH-MTHSDKPYKCDRCQASFRYKGNLASH-KTVHT------------------GEK 44
Query: 687 PFKCNLCGTGF 697
P++CN+CG F
Sbjct: 45 PYRCNICGAQF 55
Score = 38.6 bits (91), Expect = 4e-04
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 30/88 (34%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPEVR 825
+ P+ C +C + K +L H + G++
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEK------------------------------ 44
Query: 826 PHMCDLCGARFKKSSALLQHRPIHTGER 853
P+ C++CGA+F + + L H IH+GE+
Sbjct: 45 PYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 35.9 bits (84), Expect = 0.004
Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 31/93 (33%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITW 260
+ +PY+C+ C ASF+ G+L H H E
Sbjct: 11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKP------------------------- 45
Query: 261 GVDMVRYQCPMCQIVLKRKDTLRHHLKLHTGEK 293
Y+C +C R L+ H ++H+GEK
Sbjct: 46 ------YRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 35.9 bits (84), Expect = 0.005
Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 839 SSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
H + ++ + C C F +G + H
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASH 36
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 88.7 bits (221), Expect = 1e-21
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 108 NLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYR-YECSHCQKKFFRNSKL 166
+ R H+GEKP+ C C F+Q ++ +H + + C HC R S L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 167 TSHLKT-HSDLRPY 179
HL+ HS P
Sbjct: 62 GVHLRKQHSYSGPS 75
Score = 79.1 bits (196), Expect = 3e-18
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 51 SLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHL--KIKDHSCDVCGKVFSCPTN 108
S + R H+ EK + C C +F S ++ H + C C V + ++
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHIL-QKHTENVAKFHCPHCDTVIARKSD 60
Query: 109 LTVH-KRVHTGEKPF 122
L VH ++ H+ P
Sbjct: 61 LGVHLRKQHSYSGPS 75
Score = 72.9 bits (180), Expect = 3e-16
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 338 NLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSK 397
+ + +THSG+KPY C C F Q+ ++K H H + F C C R S
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAK-FHCPHCDTVIARKSD 60
Query: 398 LNAHL-KIHTEER 409
L HL K H+
Sbjct: 61 LGVHLRKQHSYSG 73
Score = 66.0 bits (162), Expect = 1e-13
Identities = 14/97 (14%), Positives = 22/97 (22%), Gaps = 31/97 (31%)
Query: 281 TLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLA 340
+ + H+GEK C C F+ +
Sbjct: 2 SSGSSGRTHSGEKPYECYICHA-----------------------------RFTQSGTMK 32
Query: 341 AHKKTHSG--DKPYVCETCGKSFAQNASLKYHHDTVH 375
H + C C A+ + L H H
Sbjct: 33 MHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 59.1 bits (144), Expect = 3e-11
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 165 KLTSHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCNLCNASFKRPGHL 223
S +THS +PYEC IC+A F + K H + C C+ R L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 224 KQHGKTHNTENK 235
H + ++ +
Sbjct: 62 GVHLRKQHSYSG 73
Score = 55.2 bits (134), Expect = 7e-10
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER---HICPVCGRGFTQRGAMKKHVSTLH 877
+P+ C +C ARF +S + H E CP C ++ + H+ H
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 49.1 bits (118), Expect = 1e-07
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGK---HVINIRNHMRQVH 819
E P+ C C + + ++ MH+ KH + C C ++ H+R+ H
Sbjct: 13 EKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 45.6 bits (109), Expect = 2e-06
Identities = 26/101 (25%), Positives = 37/101 (36%), Gaps = 33/101 (32%)
Query: 195 KKH-RIYVHSETRPYQCNLCNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENL 253
R HS +PY+C +C+A F + G +K H +TEN
Sbjct: 4 GSSGRT--HSGEKPYECYICHARFTQSGTMKMHILQKHTENVA----------------- 44
Query: 254 DSYQITWGVDMVRYQCPMCQIVLKRKDTLRHHL-KLHTGEK 293
++ CP C V+ RK L HL K H+
Sbjct: 45 ------------KFHCPHCDTVIARKSDLGVHLRKQHSYSG 73
Score = 43.3 bits (103), Expect = 1e-05
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENT--YQCDPCGKVFPSKKYMREHIKRIH 664
C C F +G + +H EN + C C V K + H+++ H
Sbjct: 18 CYICHARFTQSGTMKMHIL-QKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 40.2 bits (95), Expect = 1e-04
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 427 KKHKRFVHTDERPHACQYCSATFKKSDHLKRHSKTAHKE 465
R H+ E+P+ C C A F +S +K H H E
Sbjct: 4 GSSGR-THSGEKPYECYICHARFTQSGTMKMHILQKHTE 41
Score = 39.4 bits (93), Expect = 3e-04
Identities = 17/73 (23%), Positives = 22/73 (30%), Gaps = 18/73 (24%)
Query: 625 GALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDS 684
G+ G R HS E Y+C C F M+ HI ++
Sbjct: 1 GSSGSSGR-THSGEKPYECYICHARFTQSGTMKMHI-LQKHT----------------EN 42
Query: 685 EKPFKCNLCGTGF 697
F C C T
Sbjct: 43 VAKFHCPHCDTVI 55
Score = 32.5 bits (75), Expect = 0.071
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 765 DEPPFACPQCGKLYNKKSSLYMHLSTKH 792
+ F CP C + +KS L +HL +H
Sbjct: 42 NVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 29.8 bits (68), Expect = 0.76
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 547 CIKCNASFTSSPAMQSHLKKVHNFSNPNRFDCCFCSEIFNLKKDYHEHLKKEH 599
C C+A FT S M+ H + N +F C C + K D HL+K+H
Sbjct: 18 CYICHARFTQSGTMKMH-ILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 27.1 bits (61), Expect = 6.6
Identities = 8/28 (28%), Positives = 10/28 (35%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTY 641
C C + LG+H R HS
Sbjct: 48 CPHCDTVIARKSDLGVHLRKQHSYSGPS 75
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 87.6 bits (218), Expect = 4e-21
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 59 HTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDV--CGKVFSCPTNLTVHKRVH 116
T CGK + SS L+ H + H K + CD CG F+ LT H R H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 117 TGEKPFVCESCGKSFSQHSSLFIHKMIH 144
TG +PF C+ C ++FS+ L +H H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 75.3 bits (186), Expect = 8e-17
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 318 HLKIKDLCCDMCGKAFSCQTNLAAHKKTHSGDKPYVC--ETCGKSFAQNASLKYHHDTVH 375
CGK ++ ++L AH +TH+G+KPY C + CG FA++ L H+ H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-H 60
Query: 376 ALVKKRLFQCSQCPKKFYRNSKLNAHLKIH 405
+ FQC +C + F R+ L H+K H
Sbjct: 61 TGHRP--FQCQKCDRAFSRSDHLALHMKRH 88
Score = 74.5 bits (184), Expect = 2e-16
Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 30/116 (25%)
Query: 116 HTGEKPFVCESCGKSFSQHSSLFIHKMIHT-QRQYRYECSHCQKKFFRNSKLTSHLKTHS 174
T CGK++++ S L H HT ++ Y + C KF R+ +LT H + H+
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 175 DLRPYECDICNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
RP++C C+ +F R HL H K H
Sbjct: 62 GHRPFQC-----------------------------QKCDRAFSRSDHLALHMKRH 88
Score = 70.3 bits (173), Expect = 4e-15
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 379 KKRLFQCSQCPKKFYRNSKLNAHLKIHTEER--ACFCDICNHSFKTDNEVKKHKRFVHTD 436
+ C K + ++S L AHL+ HT E+ C D C F +E+ +H R HT
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTG 62
Query: 437 ERPHACQYCSATFKKSDHLKRHSKT 461
RP CQ C F +SDHL H K
Sbjct: 63 HRPFQCQKCDRAFSRSDHLALHMKR 87
Score = 66.8 bits (164), Expect = 8e-14
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 289 HTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKI----KDLCCDM--CGKAFSCQTNLAAH 342
T CGK Y HLK+ HL+ K CD CG F+ L H
Sbjct: 2 RTATHTCDYAGCGK----TYTKSSHLKA-HLRTHTGEKPYHCDWDGCGWKFARSDELTRH 56
Query: 343 KKTHSGDKPYVCETCGKSFAQNASLKYH 370
+ H+G +P+ C+ C ++F+++ L H
Sbjct: 57 YRKHTGHRPFQCQKCDRAFSRSDHLALH 84
Score = 54.8 bits (133), Expect = 1e-09
Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 29/109 (26%)
Query: 768 PFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPEVRPH 827
CGK Y K S L HL T G++ P C+ G
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEK--PYHCDWDG---------------------- 42
Query: 828 MCDLCGARFKKSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKHVST 875
CG +F +S L +H HTG R C C R F++ + H+
Sbjct: 43 ----CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87
Score = 45.6 bits (109), Expect = 2e-06
Identities = 27/143 (18%), Positives = 41/143 (28%), Gaps = 58/143 (40%)
Query: 147 RQYRYECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSETR 206
+ + + C K + ++S L +HL+TH+ +PY CD
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDG--------------------- 42
Query: 207 PYQCNLCNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITWGVDMVR 266
C F R L +H + H
Sbjct: 43 ------CGWKFARSDELTRHYRKHTGHR-------------------------------P 65
Query: 267 YQCPMCQIVLKRKDTLRHHLKLH 289
+QC C R D L H+K H
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKRH 88
Score = 44.8 bits (107), Expect = 4e-06
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 52 LKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHL 89
L H R HT + F C++C + F S L H K H
Sbjct: 53 LTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK-RHF 89
Score = 44.8 bits (107), Expect = 5e-06
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 405 HTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQY--CSATFKKSDHLKRHSKT 461
T C C ++ + +K H R HT E+P+ C + C F +SD L RH +
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
Score = 41.0 bits (97), Expect = 9e-05
Identities = 28/122 (22%), Positives = 40/122 (32%), Gaps = 38/122 (31%)
Query: 202 HSETRPYQCNLCNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITWG 261
+ T C ++ + HLK H +TH E + C W
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKP-------YHC-------------DW- 40
Query: 262 VDMVRYQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKR--HLKSVHL 319
C R D L H + HTG + C++C + AF R HL H+
Sbjct: 41 --------DGCGWKFARSDELTRHYRKHTGHRPFQCQKCDR------AFSRSDHLAL-HM 85
Query: 320 KI 321
K
Sbjct: 86 KR 87
Score = 38.3 bits (90), Expect = 7e-04
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER-HIC--PVCGRGFTQRGAMKKH 872
CG + KSS L H HTGE+ + C CG F + + +H
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH 56
Score = 38.3 bits (90), Expect = 7e-04
Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 22/88 (25%)
Query: 612 CACTDCGRMFYNNGALGIHRRAVHSQENTYQCDP--CGKVFPSKKYMREHIKRIHINQGR 669
C CG+ + + L H R H+ E Y CD CG F + H R H
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRH-YRKHTG--- 62
Query: 670 VRKQREPRPPAKPDSEKPFKCNLCGTGF 697
+PF+C C F
Sbjct: 63 ---------------HRPFQCQKCDRAF 75
Score = 33.7 bits (78), Expect = 0.041
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 594 HLKKEHGQTTSGTRRFQLCACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSK 653
HLK H +T +G + + C CG F + L H R H+ +QC C + F
Sbjct: 22 HLKA-HLRTHTGEKPYH-CDWDGCGWKFARSDELTRHYR-KHTGHRPFQCQKCDRAFSRS 78
Query: 654 KYMREHIKR 662
++ H+KR
Sbjct: 79 DHLALHMKR 87
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 84.8 bits (211), Expect = 2e-20
Identities = 34/94 (36%), Positives = 42/94 (44%), Gaps = 29/94 (30%)
Query: 52 LKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTV 111
IH+ EK + C ECGK FS + L
Sbjct: 2 SSGSSGIHSGEKPYGCVECGK-----------------------------AFSRSSILVQ 32
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
H+RVHTGEKP+ C CGK+FSQ+S L H+ IHT
Sbjct: 33 HQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 66.0 bits (162), Expect = 1e-13
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 339 LAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKL 398
+ HSG+KPY C CGK+F++++ L H VH K ++C +C K F +NS L
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQ-RVHTGEKP--YKCLECGKAFSQNSGL 58
Query: 399 NAHLKIHTEER 409
H +IHT
Sbjct: 59 INHQRIHTSGP 69
Score = 65.6 bits (161), Expect = 1e-13
Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 32/101 (31%)
Query: 109 LTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTS 168
+ +H+GEKP+ C CGK+FS+ S L H+ +HT
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE--------------------- 40
Query: 169 HLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPY 208
+PY+C C +F N H RI H+
Sbjct: 41 --------KPYKCLECGKAFSQNSGLINHQRI--HTSGPSS 71
Score = 64.4 bits (158), Expect = 4e-13
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
C CGKAFS + L H++ H+G+KPY C CGK+F+QN+ L H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
Score = 58.3 bits (142), Expect = 5e-11
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 13/77 (16%)
Query: 282 LRHHLKLHTGEKFVTCEQCGKQLHGVYAFKR--HLKSVHLKI----KDLCCDMCGKAFSC 335
+H+GEK C +CGK AF R L H ++ K C CGKAFS
Sbjct: 2 SSGSSGIHSGEKPYGCVECGK------AFSRSSIL-VQHQRVHTGEKPYKCLECGKAFSQ 54
Query: 336 QTNLAAHKKTHSGDKPY 352
+ L H++ H+
Sbjct: 55 NSGLINHQRIHTSGPSS 71
Score = 50.2 bits (121), Expect = 4e-08
Identities = 19/72 (26%), Positives = 24/72 (33%), Gaps = 29/72 (40%)
Query: 51 SLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLT 110
L H R+HT EK + C E CGK FS + L
Sbjct: 29 ILVQHQRVHTGEKPYKCLE-----------------------------CGKAFSQNSGLI 59
Query: 111 VHKRVHTGEKPF 122
H+R+HT
Sbjct: 60 NHQRIHTSGPSS 71
Score = 47.5 bits (114), Expect = 3e-07
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
+P+ C CG F +SS L+QH+ +HTGE+ + C CG+ F+Q + H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 44.0 bits (105), Expect = 5e-06
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 398 LNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHLKR 457
+ IH+ E+ C C +F + + +H+R VHT E+P+ C C F ++ L
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLIN 60
Query: 458 H 458
H
Sbjct: 61 H 61
Score = 42.1 bits (100), Expect = 3e-05
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 30/88 (34%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPEVR 825
E P+ C +CGK +++ S L H R H + +
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQ-----------------------RVHTGE-------K 41
Query: 826 PHMCDLCGARFKKSSALLQHRPIHTGER 853
P+ C CG F ++S L+ H+ IHT
Sbjct: 42 PYKCLECGKAFSQNSGLINHQRIHTSGP 69
Score = 42.1 bits (100), Expect = 3e-05
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
C +CG+ F + L H+R VH+ E Y+C CGK F + H +RIH
Sbjct: 17 CVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINH-QRIH 65
Score = 39.0 bits (92), Expect = 3e-04
Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 20/71 (28%)
Query: 627 LGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEK 686
+HS E Y C CGK F + +H +R+H EK
Sbjct: 2 SSGSSG-IHSGEKPYGCVECGKAFSRSSILVQH-QRVHTG------------------EK 41
Query: 687 PFKCNLCGTGF 697
P+KC CG F
Sbjct: 42 PYKCLECGKAF 52
Score = 34.8 bits (81), Expect = 0.012
Identities = 21/97 (21%), Positives = 29/97 (29%), Gaps = 33/97 (34%)
Query: 197 HRIYVHSETRPYQCNLCNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSY 256
I HS +PY C C +F R L QH + H E
Sbjct: 6 SGI--HSGEKPYGCVECGKAFSRSSILVQHQRVHTGEK---------------------- 41
Query: 257 QITWGVDMVRYQCPMCQIVLKRKDTLRHHLKLHTGEK 293
Y+C C + L +H ++HT
Sbjct: 42 ---------PYKCLECGKAFSQNSGLINHQRIHTSGP 69
Score = 32.8 bits (76), Expect = 0.047
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 842 LLQHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
IH+GE+ + C CG+ F++ + +H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQH 33
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 77.7 bits (192), Expect = 1e-17
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 94 HSCDV--CGKVFSCPTNLTVHKRVHTGEKPFVC--ESCGKSFSQHSSLFIHKMIHTQRQY 149
+ C CGK F L VH+ HT + P+ C E C K FS S L H+ +H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA-GYP 60
Query: 150 RYECSHCQKKFFRNSKLTSHLK-TH 173
+ C + H+ H
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 71.5 bits (176), Expect = 2e-15
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 67 CEECGKQFVTSSALRRHKKAVHLKIKDHSCDV--CGKVFSCPTNLTVHKRVHTGEKPFVC 124
E CGK F + L+ H+ H + + C C K FS P+ L H++VH G
Sbjct: 6 FENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 125 ESCGKSFSQHSSLFIHKM 142
+SC + H
Sbjct: 65 DSCSFVGKTWTLYLKHVA 82
Score = 59.9 bits (146), Expect = 2e-11
Identities = 27/111 (24%), Positives = 35/111 (31%), Gaps = 33/111 (29%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC--ETCGKSFAQNASLKYHHDTVHALVKKRLF 383
+ CGKAF L H+ +H+ PY C E C K F+
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFS--------------------- 44
Query: 384 QCSQCPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVH 434
S+L H K+H D C+ KT KH H
Sbjct: 45 ----------LPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 58.8 bits (143), Expect = 5e-11
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 149 YRYECSHCQKKFFRNSKLTSHLKTHSDLRPYECD--ICNASFKTNYERKKHRIYVHSETR 206
Y +C K F ++++L H +H+ PYEC C+ F K+H VH+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYP 60
Query: 207 PYQCNLCNASFKRPGHLKQHGK-TH 230
+ + C+ K +H H
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 57.6 bits (140), Expect = 1e-10
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 385 CSQCPKKFYRNSKLNAHLKIHTEER--ACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
C K F ++++L H HT++ C + C+ F + +K+H++ VH
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYPCKKD 64
Query: 443 QYCSATFKKSDHLKRHSKTAH 463
CS K +H H
Sbjct: 65 DSCSFVGKTWTLYLKHVAECH 85
Score = 56.1 bits (136), Expect = 5e-10
Identities = 20/107 (18%), Positives = 29/107 (27%), Gaps = 27/107 (25%)
Query: 269 CPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDM 328
C K+ + L+ H HT + C G
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEG--------------------------- 38
Query: 329 CGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVH 375
C K FS + L H+K H+G ++C H H
Sbjct: 39 CDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 41.1 bits (97), Expect = 8e-05
Identities = 21/110 (19%), Positives = 30/110 (27%), Gaps = 33/110 (30%)
Query: 771 CPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPEVRPHMCD 830
CGK + K + L +H + + P+ C
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQ------------------------------LPYECP 35
Query: 831 --LCGARFKKSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKHVSTLH 877
C RF S L +H +H G C KHV+ H
Sbjct: 36 HEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 37.6 bits (88), Expect = 0.001
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 827 HMCDL--CGARFKKSSALLQHRPIHTGER-HIC--PVCGRGFTQRGAMKKH 872
++C CG FKK + L H+ HT + + C C + F+ +K+H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 52
Score = 36.1 bits (84), Expect = 0.005
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 19/88 (21%)
Query: 612 CACTDCGRMFYNNGALGIHRRAVHSQENTYQCD--PCGKVFPSKKYMREHIKRIHINQGR 669
C +CG+ F + L +H+ H+Q+ Y+C C K F ++ H +++H
Sbjct: 4 CHFENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRH-EKVH----- 56
Query: 670 VRKQREPRPPAKPDSEKPFKCNLCGTGF 697
A +K C+ G +
Sbjct: 57 ----------AGYPCKKDDSCSFVGKTW 74
Score = 35.3 bits (82), Expect = 0.008
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 612 CACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
C C + F L H + VH+ + D C V + +H+ H
Sbjct: 34 CPHEGCDKRFSLPSRLKRHEK-VHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 33.0 bits (76), Expect = 0.057
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 766 EPPFACPQ--CGKLYNKKSSLYMHLSTKHGKRSE-PTVCEACGKHVINIRNHMRQVH 819
+ P+ CP C K ++ S L H G + C GK H+ + H
Sbjct: 29 QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 29.1 bits (66), Expect = 1.5
Identities = 20/115 (17%), Positives = 32/115 (27%), Gaps = 35/115 (30%)
Query: 208 YQCNL--CNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITWGVDMV 265
Y C+ C +FK+ LK H +H +
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLP------------------------------ 31
Query: 266 RYQC--PMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVH 318
Y+C C L+ H K+H G + C + +H+ H
Sbjct: 32 -YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 76.4 bits (189), Expect = 2e-17
Identities = 15/54 (27%), Positives = 21/54 (38%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
C C S L +H+R+H ++PF C C Q S+L H
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Score = 72.5 bits (179), Expect = 5e-16
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 57 RIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVH 116
+ C EC + +ALR H++ +H + C+ C P+NL+ H +
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHER-IHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Query: 117 TGEKPFVCESCG 128
G+ S G
Sbjct: 61 HGDMS--GPSSG 70
Score = 71.4 bits (176), Expect = 1e-15
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 114 RVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTH 173
+ P C C S S ++L IH+ IH ++C++C + S L+ H+K
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHC-TDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 63.3 bits (155), Expect = 8e-13
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 345 THSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHLKI 404
+ S P C C S + A+L+ H H + F+C+ C + S L+ H+K
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERI-HCTDRP--FKCNYCSFDTKQPSNLSKHMKK 59
Query: 405 HTEERAC 411
+ +
Sbjct: 60 FHGDMSG 66
Score = 62.9 bits (154), Expect = 1e-12
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
C C + S + L H++ H D+P+ C C Q ++L H
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM 57
Score = 51.0 bits (123), Expect = 2e-08
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 9/68 (13%)
Query: 289 HTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKI----KDLCCDMCGKAFSCQTNLAAHKK 344
+ C +C + K L +H +I + C+ C +NL+ H K
Sbjct: 4 GSSGHPEKCSECSYS----CSSKAAL-RIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
Query: 345 THSGDKPY 352
GD
Sbjct: 59 KFHGDMSG 66
Score = 51.0 bits (123), Expect = 2e-08
Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKHVST 875
P C C +AL H IH +R C C Q + KH+
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
Score = 44.8 bits (107), Expect = 2e-06
Identities = 17/95 (17%), Positives = 26/95 (27%), Gaps = 31/95 (32%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPEVR 825
P C +C + K++L +H R
Sbjct: 7 GHPEKCSECSYSCSSKAALRIHERIHCTDR------------------------------ 36
Query: 826 PHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
P C+ C K+ S L +H G+ P G
Sbjct: 37 PFKCNYCSFDTKQPSNLSKHMKKFHGDMS-GPSSG 70
Score = 39.0 bits (92), Expect = 3e-04
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 405 HTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
+ C C++S + ++ H+R +H +RP C YCS K+ +L +H K
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHER-IHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
Score = 38.6 bits (91), Expect = 4e-04
Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 33/101 (32%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITW 260
S P +C+ C+ S L+ H + H T+
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRP------------------------- 37
Query: 261 GVDMVRYQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCG 301
++C C K+ L H+K G+ + G
Sbjct: 38 ------FKCNYCSFDTKQPSNLSKHMKKFHGDM--SGPSSG 70
Score = 38.6 bits (91), Expect = 4e-04
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
C++C + AL IH R +H + ++C+ C + +H +
Sbjct: 12 CSECSYSCSSKAALRIHER-IHCTDRPFKCNYCSFDTKQPSNLSKH-MKKF 60
Score = 36.7 bits (86), Expect = 0.002
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 19/65 (29%)
Query: 633 AVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFKCNL 692
+ S + +C C SK +R H +RIH +++PFKCN
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIH-ERIHC------------------TDRPFKCNY 42
Query: 693 CGTGF 697
C
Sbjct: 43 CSFDT 47
Score = 29.4 bits (67), Expect = 0.73
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 433 VHTDERPHACQYCSATFKKSDHLKRHSKT 461
+ P C CS + L+ H +
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERI 31
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 76.1 bits (188), Expect = 2e-17
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 113 KRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYR-YECSHCQKKFFRNSKLTSHLK 171
+ GE + C+ C + ++ S+ H + +R + Y C C K+F R +T+H+K
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Query: 172 THSDL 176
+
Sbjct: 62 IIHKI 66
Score = 70.7 bits (174), Expect = 2e-15
Identities = 14/90 (15%), Positives = 24/90 (26%), Gaps = 27/90 (30%)
Query: 57 RIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVH 116
E + C+ C + + S RH H
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSH---------------------------K 35
Query: 117 TGEKPFVCESCGKSFSQHSSLFIHKMIHTQ 146
K + C C K F++ ++ H I +
Sbjct: 36 RNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 67.2 bits (165), Expect = 3e-14
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 343 KKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHL 402
+ T G+ Y C+ C + + ++ H+ T H K + C C K+F R + AH+
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV-YPCPFCFKEFTRKDNMTAHV 60
Query: 403 KIHTE 407
KI +
Sbjct: 61 KIIHK 65
Score = 59.9 bits (146), Expect = 1e-11
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 326 CDMCGKAFSCQTNLAAHKKT--HSGDKPYVCETCGKSFAQNASLKYHHDTVHAL 377
C +C + ++ +N H T K Y C C K F + ++ H +H +
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 52.6 bits (127), Expect = 4e-09
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 404 IHTEERACFCDICNHSFKTDNEVKKHKR-FVHTDERPHACQYCSATFKKSDHLKRHSKTA 462
E C +C+ + + +H + + + C +C F + D++ H K
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Query: 463 HK 464
HK
Sbjct: 64 HK 65
Score = 49.5 bits (119), Expect = 5e-08
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 825 RPHMCDLCGARFKKSSALLQHR--PIHTGER-HICPVCGRGFTQRGAMKKHVSTLHH 878
+ C +C + S +H + + CP C + FT++ M HV H
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI-IH 64
Score = 40.2 bits (95), Expect = 1e-04
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 614 CTDCGRMFYNNGALGIHRR-AVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
C C R++ + H + Y C C K F K M H+K IH
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 39.5 bits (93), Expect = 2e-04
Identities = 14/86 (16%), Positives = 23/86 (26%), Gaps = 28/86 (32%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPEVR 825
E + C C ++Y S+ H T H + V+
Sbjct: 8 EHTYRCKVCSRVYTHISNFCRHYVTSHKR----------------------------NVK 39
Query: 826 PHMCDLCGARFKKSSALLQHRPIHTG 851
+ C C F + + H I
Sbjct: 40 VYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 38.3 bits (90), Expect = 4e-04
Identities = 16/91 (17%), Positives = 25/91 (27%), Gaps = 31/91 (34%)
Query: 202 HSETRPYQCNLCNASFKRPGHLKQHGKT-HNTENKGLLEEHVFSCKAKRKENLDSYQITW 260
Y+C +C+ + + +H T H K
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVK------------------------- 39
Query: 261 GVDMVRYQCPMCQIVLKRKDTLRHHLKLHTG 291
Y CP C RKD + H+K+
Sbjct: 40 -----VYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 37.9 bits (89), Expect = 7e-04
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 848 IHTGER-HICPVCGRGFTQRGAMKKHVSTLHH 878
GE + C VC R +T +H T H
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHK 35
Score = 35.2 bits (82), Expect = 0.006
Identities = 11/63 (17%), Positives = 17/63 (26%), Gaps = 17/63 (26%)
Query: 635 HSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFKCNLCG 694
E+TY+C C +V+ H + K + C C
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRH-YVTSHKRN----------------VKVYPCPFCF 47
Query: 695 TGF 697
F
Sbjct: 48 KEF 50
Score = 33.7 bits (78), Expect = 0.018
Identities = 14/84 (16%), Positives = 19/84 (22%), Gaps = 31/84 (36%)
Query: 267 YQCPMCQIVLKRKDTLRHHL--KLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDL 324
Y+C +C V H K C
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPF------------------------- 45
Query: 325 CCDMCGKAFSCQTNLAAHKKTHSG 348
C K F+ + N+ AH K
Sbjct: 46 ----CFKEFTRKDNMTAHVKIIHK 65
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 75.2 bits (186), Expect = 4e-17
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKM-IHT 145
+ C+VC + F+ +L H R HT EKP+ C C ++F++ L H IH+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 64.0 bits (157), Expect = 4e-13
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVH 375
C++C +AF+ Q +L H ++H+ +KPY C C ++F + L H +H
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 53.3 bits (129), Expect = 2e-09
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 350 KPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHL-KIHTEE 408
+ +VCE C ++FA+ LK H+ + H ++ + C C + F R L H KIH+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS-HT--NEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 52.9 bits (128), Expect = 3e-09
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKHVSTLH 877
R +C++C F + L +H HT E+ + C +C R FT+R + +H +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 49.0 bits (118), Expect = 7e-08
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 52 LKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVH 88
LK H R HT EK + C C + F L RH + +H
Sbjct: 18 LKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 43.6 bits (104), Expect = 5e-06
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
C C R F L H R H+ E Y C C + F + + H ++IH
Sbjct: 5 CEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 40.9 bits (97), Expect = 5e-05
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 177 RPYECDICNASFKTNYERKKH-RIYVHSETRPYQCNLCNASFKRPGHLKQHG-KTHNTE 233
R + C++C +F K+H R H+ +PY C LCN +F R L +H K H+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS--HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 40.9 bits (97), Expect = 5e-05
Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 29/83 (34%)
Query: 381 RLFQCSQCPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPH 440
R F C C + F R HLK H R HT+E+P+
Sbjct: 1 RSFVCEVCTRAFARQE----HLKRH--YR-----------------------SHTNEKPY 31
Query: 441 ACQYCSATFKKSDHLKRHSKTAH 463
C C+ F + D L RH++ H
Sbjct: 32 PCGLCNRAFTRRDLLIRHAQKIH 54
Score = 36.3 bits (85), Expect = 0.002
Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 32/89 (35%)
Query: 206 RPYQCNLCNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITWGVDMV 265
R + C +C +F R HLK+H ++H E
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKP------------------------------ 30
Query: 266 RYQCPMCQIVLKRKDTL-RHHLKLHTGEK 293
Y C +C R+D L RH K+H+G
Sbjct: 31 -YPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 35.9 bits (84), Expect = 0.002
Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 30/85 (35%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCC 326
+ C +C R++ L+ H + HT EK C
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGL--------------------------- 35
Query: 327 DMCGKAFSCQTNLAAH-KKTHSGDK 350
C +AF+ + L H +K HSG+
Sbjct: 36 --CNRAFTRRDLLIRHAQKIHSGNL 58
Score = 35.9 bits (84), Expect = 0.003
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 31/86 (36%)
Query: 768 PFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPEVRPH 827
F C C + + ++ L H R+H + +P+
Sbjct: 2 SFVCEVCTRAFARQEHLKRH-----------------------YRSHTNE-------KPY 31
Query: 828 MCDLCGARFKKSSALLQH-RPIHTGE 852
C LC F + L++H + IH+G
Sbjct: 32 PCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 34.0 bits (79), Expect = 0.012
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 19/57 (33%)
Query: 641 YQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFKCNLCGTGF 697
+ C+ C + F +++++ H R H N EKP+ C LC F
Sbjct: 3 FVCEVCTRAFARQEHLKRH-YRSHTN------------------EKPYPCGLCNRAF 40
Score = 27.8 bits (63), Expect = 2.3
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C C + + ++ L H
Sbjct: 28 EKPYPCGLCNRAFTRRDLLIRH 49
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 74.0 bits (182), Expect = 2e-16
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 116 HTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQ--YRYECSHCQKKFFRNSKLTSHLKTH 173
+G CE CG + Q +SL H+ H + R+ C C K+F + + +H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 174 SDLRPYEC 181
Sbjct: 62 HPALLLAP 69
Score = 66.3 bits (162), Expect = 8e-14
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 346 HSGDKPYVCETCGKSFAQNASLKYHHDTVHALVK-KRLFQCSQCPKKFYRNSKLNAHLKI 404
SG CE CG + Q ASL +H HA F C C K+F + + AH
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQ-RKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Query: 405 HTEERACFC 413
Sbjct: 61 SHPALLLAP 69
Score = 64.7 bits (158), Expect = 4e-13
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 59 HTKEKLFICEECGKQFVTSSALRRHKK--AVHLKIKDHSCDVCGKVFSCPTNLTVHKRVH 116
+ CE CG ++L H++ A + C+ CGK F P ++ H+
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 117 TGEK-PFVCESCGKSF 131
ES G S
Sbjct: 62 HPALLLAPQESSGPSS 77
Score = 55.5 bits (134), Expect = 6e-10
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 49 KYSLKNHVRIHTK---EKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVF 103
K SL H R H + F CE CGK+F ++ H+ H + + G
Sbjct: 20 KASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSGPSS 77
Score = 53.9 bits (130), Expect = 2e-09
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 5/74 (6%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER----HICPVCGRGFTQRGAMKKHVSTLHHLV 880
C++CG ++ ++L H+ H C CG+ F + ++ H S H
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK-SHPA 64
Query: 881 LPNKSDEPPTQLYG 894
L E G
Sbjct: 65 LLLAPQESSGPSSG 78
Score = 53.9 bits (130), Expect = 2e-09
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 289 HTGEKFVTCEQCGKQLHGVYAFKRHLK--SVHLKIKDLCCDMCGKAFSCQTNLAAHKKTH 346
+G + CE CG + H + + + C+ CGK F ++AAH+
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 347 SGDK-PYVCETCGKSFA 362
E+ G S
Sbjct: 62 HPALLLAPQESSGPSSG 78
Score = 50.1 bits (120), Expect = 4e-08
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 405 HTEERACFCDICNHSFKTDNEVKKHKRFVHTD---ERPHACQYCSATFKKSDHLKRHSKT 461
+ C+IC + + + H+R H + C++C F+K D + H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Query: 462 AHKEM 466
+H +
Sbjct: 61 SHPAL 65
Score = 44.7 bits (106), Expect = 3e-06
Identities = 17/92 (18%), Positives = 25/92 (27%), Gaps = 27/92 (29%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPEVR 825
C CG +K+SL H R+
Sbjct: 5 SSGLQCEICGFTCRQKASL---------------------------NWHQRKHAETVAAL 37
Query: 826 PHMCDLCGARFKKSSALLQHRPIHTGERHICP 857
C+ CG RF+K ++ HR + P
Sbjct: 38 RFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP 69
Score = 42.8 bits (101), Expect = 2e-05
Identities = 15/105 (14%), Positives = 29/105 (27%), Gaps = 28/105 (26%)
Query: 202 HSETRPYQCNLCNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITWG 261
S + QC +C + ++ L H + H E L
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKH-AETVAAL----------------------- 37
Query: 262 VDMVRYQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHG 306
R+ C C ++ D++ H + ++ G
Sbjct: 38 ----RFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSGPSSG 78
Score = 42.4 bits (100), Expect = 2e-05
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQ---ENTYQCDPCGKVFPSKKYMREHIKRIH 664
C CG +L H+R H++ + C+ CGK F + H + H
Sbjct: 10 CEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 38.5 bits (90), Expect = 6e-04
Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 16/73 (21%)
Query: 635 HSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFKCNLCG 694
S + QC+ CG K + H +R H A+ + F C CG
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWH-QRKH---------------AETVAALRFPCEFCG 45
Query: 695 TGFESDRQVSGHR 707
FE V+ HR
Sbjct: 46 KRFEKPDSVAAHR 58
Score = 37.4 bits (87), Expect = 0.001
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGK 806
F C CGK + K S+ H S H E+ G
Sbjct: 36 ALRFPCEFCGKRFEKPDSVAAHRSKSHPALL-LAPQESSGP 75
Score = 33.5 bits (77), Expect = 0.032
Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 5/75 (6%)
Query: 576 FDCCFCSEIFNLKKDYHEHLKKEHGQTTSGTRRFQLCACTDCGRMFYNNGALGIHRRAVH 635
C C K + H +K H +T RF C CG+ F ++ HR H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRK-HAET-VAALRFP---CEFCGKRFEKPDSVAAHRSKSH 62
Query: 636 SQENTYQCDPCGKVF 650
+ G
Sbjct: 63 PALLLAPQESSGPSS 77
Score = 28.5 bits (64), Expect = 1.8
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Query: 547 CIKCNASFTSSPAMQSHLKKVHNFSNPNR-FDCCFCSEIFNLKKDYHEHLKKEHGQTTSG 605
C C + ++ H ++ H + F C FC + F H K H
Sbjct: 10 CEICGFTCRQKASLNWH-QRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLA 68
Query: 606 TRR 608
+
Sbjct: 69 PQE 71
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 68.3 bits (166), Expect = 5e-14
Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 5/111 (4%)
Query: 104 SCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYR----YECSHCQKK 159
S ++ ++ + TG F C+ C ++ L +H + + +
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 160 FFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRI-YVHSETRPYQ 209
R L + +C C SF++ + H I H +
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
Score = 65.9 bits (160), Expect = 3e-13
Identities = 26/103 (25%), Positives = 37/103 (35%), Gaps = 5/103 (4%)
Query: 48 SKYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAV-HLKIKDHSCDVCGKV---F 103
S S K + I T F C++C + T L H H + +H D
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62
Query: 104 SCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQ 146
+L + +K C CG SF L +H MI T+
Sbjct: 63 PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH-MIKTK 104
Score = 57.5 bits (138), Expect = 3e-10
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 2/98 (2%)
Query: 334 SCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYH-HDTVHALVK-KRLFQCSQCPKK 391
S ++ + +G + C+ C ++ L H ++T H +
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 392 FYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKH 429
R L ++ C C HSF++ ++ H
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 54.4 bits (130), Expect = 4e-09
Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 4/95 (4%)
Query: 281 TLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSV-HLKIKDLCCDMCG---KAFSCQ 336
+ + + + TG C+ C + H+ H + + D + +
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 337 TNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+L + K C CG SF L H
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHM 100
Score = 40.5 bits (94), Expect = 3e-04
Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 18/110 (16%)
Query: 597 KEHGQTTSGTRRFQLCACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYM 656
K +G +G +F+ C DC + L +H + P +
Sbjct: 8 KLYGSIFTGASKFR---CKDCSAAYDTLVELTVHMN--ETGHYRDDNHETDNNNPKRW-- 60
Query: 657 REHIKRIHINQGRVRKQREPRPPAKPDSEKPFKCNLCGTGFESDRQVSGH 706
+ RK+ K D++K KC CG FES + +S H
Sbjct: 61 -----------SKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 40.1 bits (93), Expect = 4e-04
Identities = 16/83 (19%), Positives = 24/83 (28%), Gaps = 3/83 (3%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHL-STKHGKRS--EPTVCEACGKHVINIRNHMRQVHLYP 822
F C C Y+ L +H+ T H + E R+ +
Sbjct: 17 ASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKED 76
Query: 823 EVRPHMCDLCGARFKKSSALLQH 845
+ C CG F+ L H
Sbjct: 77 AQKVLKCMYCGHSFESLQDLSVH 99
Score = 39.0 bits (90), Expect = 0.001
Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 11/101 (10%)
Query: 545 LFCIKCNASFTSSPAMQSHLKKVHNFSNPNR--FDCCFCSEIFNLKKDYHEHLKKEHGQT 602
C C+A++ + + H+ + ++ + N + K+ E KE Q
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQK 79
Query: 603 TSGTRRFQLCACTDCGRMFYNNGALGIH-RRAVHSQENTYQ 642
+ C CG F + L +H + H Q+ +
Sbjct: 80 --------VLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
Score = 35.1 bits (80), Expect = 0.018
Identities = 12/90 (13%), Positives = 25/90 (27%), Gaps = 4/90 (4%)
Query: 575 RFDCCFCSEIFNLKKDYHEHLKKEHGQTTSGTRRFQLCACTDCGRMFYNNGALGIHRRAV 634
+F C CS ++ + H+ + +L
Sbjct: 19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDN---NNPKRWSKPRKRSLLEMEGK- 74
Query: 635 HSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
+ +C CG F S + + H+ +
Sbjct: 75 EDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 35.1 bits (80), Expect = 0.019
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 8/94 (8%)
Query: 266 RYQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRH-----LKSVHLK 320
+++C C L H+ TG + ++ R ++
Sbjct: 19 KFRCKDCSAAYDTLVELTVHMN-ETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDA 77
Query: 321 IKDLCCDMCGKAFSCQTNLAAH--KKTHSGDKPY 352
K L C CG +F +L+ H K H
Sbjct: 78 QKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSG 111
Score = 34.7 bits (79), Expect = 0.027
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 838 KSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKHVSTLHHLVLPNKSDEP 888
S+ + I TG C C + + H++ H N +
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDN 54
Score = 31.3 bits (70), Expect = 0.49
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 426 VKKHKRFVHTDERPHACQYCSATFKKSDHLKRHSKTAHKEMYQSEDIDQ 474
K + + T C+ CSA + L H + + D
Sbjct: 7 GKLYGS-IFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDN 54
Score = 29.7 bits (66), Expect = 1.4
Identities = 11/43 (25%), Positives = 14/43 (32%)
Query: 41 PHSRQHLSKYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRH 83
P K SL +K+ C CG F + L H
Sbjct: 57 PKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 29.7 bits (66), Expect = 1.4
Identities = 12/59 (20%), Positives = 17/59 (28%)
Query: 541 PSQNLFCIKCNASFTSSPAMQSHLKKVHNFSNPNRFDCCFCSEIFNLKKDYHEHLKKEH 599
N N S P +S L+ C +C F +D H+ K
Sbjct: 46 RDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 29.3 bits (65), Expect = 1.8
Identities = 15/118 (12%), Positives = 32/118 (27%), Gaps = 26/118 (22%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITW 260
+ + ++C C+A++ L H + R +N ++
Sbjct: 13 IFTGASKFRCKDCSAAYDTLVELTVH---------------MNETGHYRDDNHETDN--- 54
Query: 261 GVDMVRYQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVH 318
+ RK +L +K + C CG + H+
Sbjct: 55 --------NNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 3e-13
Identities = 18/35 (51%), Positives = 20/35 (57%)
Query: 111 VHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
TGEKPF C+ CGKSF S L H M+HT
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHT 36
Score = 54.8 bits (133), Expect = 5e-10
Identities = 19/73 (26%), Positives = 21/73 (28%), Gaps = 29/73 (39%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHK 113
+ T EK F C+ CGK F S L H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRS-----------------------------RLNRHS 32
Query: 114 RVHTGEKPFVCES 126
VHT EKP S
Sbjct: 33 MVHTAEKPSGPSS 45
Score = 47.1 bits (113), Expect = 2e-07
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G+KP+ C+ CGKSF + L H
Sbjct: 1 GSSGSSGTGEKPFKCDICGKSFCGRSRLNRHS 32
Score = 45.6 bits (109), Expect = 7e-07
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
CD+CGK+F ++ L H H+ +KP +
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKPSGPSS 45
Score = 35.2 bits (82), Expect = 0.004
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P CD+CG F S L +H +HT E+
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEK 39
Score = 33.6 bits (78), Expect = 0.012
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E ++CD CGK F + + H +H +EKP
Sbjct: 1 GSSGS-SGTGEKPFKCDICGKSFCGRSRLNRH-SMVHT------------------AEKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 32.8 bits (76), Expect = 0.022
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T E+ CDIC SF + + +H VHT E+P
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSM-VHTAEKPSGP 43
Score = 31.3 bits (72), Expect = 0.079
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
T E+P C C +F L RHS
Sbjct: 3 SGS-SGTGEKPFKCDICGKSFCGRSRLNRHSMV 34
Score = 31.3 bits (72), Expect = 0.082
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSETRPYQCN 211
S + + +P++CDIC SF +H + VH+ +P +
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSM-VHTAEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.090
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+ +P++C++C SF L +H H E
Sbjct: 6 SGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAE 38
Score = 30.9 bits (71), Expect = 0.11
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ C +CG+ F R + +H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRH 31
Score = 28.2 bits (64), Expect = 1.2
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E PF C CGK + +S L H
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRH 31
Score = 25.9 bits (58), Expect = 6.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 685 EKPFKCNLCGTGF 697
EKPFKC++CG F
Sbjct: 10 EKPFKCDICGKSF 22
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 4e-13
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TGEKPF C CGK+FS H L H+ IHT + S
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHT-GEKPSGPSS 45
Score = 52.5 bits (127), Expect = 3e-09
Identities = 20/72 (27%), Positives = 23/72 (31%), Gaps = 29/72 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
T EK F C +CGK FS L H+R
Sbjct: 3 SGSSGTGEKPFDCIDCGK-----------------------------AFSDHIGLNQHRR 33
Query: 115 VHTGEKPFVCES 126
+HTGEKP S
Sbjct: 34 IHTGEKPSGPSS 45
Score = 46.4 bits (111), Expect = 5e-07
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G+KP+ C CGK+F+ + L H
Sbjct: 1 GSSGSSGTGEKPFDCIDCGKAFSDHIGLNQHR 32
Score = 45.2 bits (108), Expect = 1e-06
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C CGKAFS L H++ H+G+KP +
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45
Score = 35.6 bits (83), Expect = 0.003
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P C CG F L QHR IHTGE+
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEK 39
Score = 30.9 bits (71), Expect = 0.11
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ +P+ C C +F L QH + H
Sbjct: 6 SGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 30.6 bits (70), Expect = 0.16
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T E+ C C +F + +H+R +HT E+P
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRR-IHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.16
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ C CG+ F+ + +H
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQH 31
Score = 30.6 bits (70), Expect = 0.18
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 630 HRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
+ E + C CGK F + +H +RIH
Sbjct: 3 SGS-SGTGEKPFDCIDCGKAFSDHIGLNQH-RRIH 35
Score = 29.8 bits (68), Expect = 0.28
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
T E+P C C F L +H +
Sbjct: 2 SSGS-SGTGEKPFDCIDCGKAFSDHIGLNQHRRI 34
Score = 29.4 bits (67), Expect = 0.49
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +P++C C +F + +H RI H+ +P +
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRI--HTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 1.3
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E PF C CGK ++ L H
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQH 31
Score = 26.3 bits (59), Expect = 5.0
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C DCG+ F ++ L HRR +H+ E
Sbjct: 15 CIDCGKAFSDHIGLNQHRR-IHTGEKPSGP 43
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 63.8 bits (156), Expect = 4e-13
Identities = 17/80 (21%), Positives = 24/80 (30%), Gaps = 28/80 (35%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHK 113
+ + K +IC+ CGK F L H K
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIK---------------------------- 33
Query: 114 RVHTGEKPFVCESCGKSFSQ 133
+VHT E+P C+ S
Sbjct: 34 QVHTSERPHKCQVWVSGPSS 53
Score = 56.0 bits (136), Expect = 2e-10
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIH-KMIHTQRQYRYECSHCQKKF 160
+ KP++C+SCGK FS+ L H K +HT + ++C
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSER-PHKCQVWVSGP 51
Score = 53.7 bits (130), Expect = 1e-09
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 315 KSVHLKIKDLCCDMCGKAFSCQTNLAAH-KKTHSGDKPYVCETCGKSFAQ 363
S K C CGK FS +L H K+ H+ ++P+ C+ +
Sbjct: 4 GSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 53.4 bits (129), Expect = 2e-09
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 341 AHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKF 392
+ + S KPY+C++CGK F++ L H VH +R +C
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHT--SERPHKCQVWVSGP 51
Score = 46.0 bits (110), Expect = 7e-07
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 18/67 (26%)
Query: 633 AVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFKCNL 692
+ S Y C CGK F ++ HIK++H SE+P KC +
Sbjct: 5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH------------------TSERPHKCQV 46
Query: 693 CGTGFES 699
+G S
Sbjct: 47 WVSGPSS 53
Score = 45.3 bits (108), Expect = 1e-06
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 825 RPHMCDLCGARFKKSSALLQH-RPIHTGER-HICPVCGRGFTQ 865
+P++C CG F + L H + +HT ER H C V G +
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 43.3 bits (103), Expect = 7e-06
Identities = 13/50 (26%), Positives = 20/50 (40%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATF 449
+ + + C C F + + H + VHT ERPH CQ +
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 41.8 bits (99), Expect = 2e-05
Identities = 13/50 (26%), Positives = 20/50 (40%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSETRPYQCNLCNASF 217
S + S +PY C C F H VH+ RP++C + +
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 40.3 bits (95), Expect = 6e-05
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPS 652
C CG+ F L H + VH+ E ++C S
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 37.2 bits (87), Expect = 8e-04
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGK-THNTE 233
S +PY C C F RP HL H K H +E
Sbjct: 6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSE 39
Score = 36.8 bits (86), Expect = 0.001
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 433 VHTDERPHACQYCSATFKKSDHLKRHSKTAH 463
+ +P+ CQ C F + DHL H K H
Sbjct: 6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
Score = 34.5 bits (80), Expect = 0.008
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 267 YQCPMCQIVLKRKDTLRHHLK-LHTGEKFVTCEQCGK 302
Y C C R D L H+K +HT E+ C+
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVS 49
Score = 32.9 bits (76), Expect = 0.026
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 760 GKINGDEPPFACPQCGKLYNKKSSLYMHLSTKH-GKRSEPTVCEACGK 806
G P+ C CGK +++ L H+ H +R P C+
Sbjct: 4 GSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSER--PHKCQVWVS 49
Score = 31.8 bits (73), Expect = 0.075
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKHVSTLH 877
+ + +IC CG+GF++ + H+ +H
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 4e-13
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TG KP++C CGK+FS +SSL H++IHT + S
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEK-PSGPSS 45
Score = 55.2 bits (134), Expect = 3e-10
Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 29/73 (39%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHK 113
+ T K ++C ECGK FS ++LT H+
Sbjct: 2 SSGSSGTGVKPYMCNECGK-----------------------------AFSVYSSLTTHQ 32
Query: 114 RVHTGEKPFVCES 126
+HTGEKP S
Sbjct: 33 VIHTGEKPSGPSS 45
Score = 46.0 bits (110), Expect = 5e-07
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G KPY+C CGK+F+ +SL H
Sbjct: 1 GSSGSSGTGVKPYMCNECGKAFSVYSSLTTHQ 32
Score = 45.6 bits (109), Expect = 8e-07
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCE 355
C+ CGKAFS ++L H+ H+G+KP
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.005
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+MC+ CG F S+L H+ IHTGE+
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEK 39
Score = 32.1 bits (74), Expect = 0.050
Identities = 12/62 (19%), Positives = 17/62 (27%), Gaps = 20/62 (32%)
Query: 630 HRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFK 689
+ Y C+ CGK F + H + IH EKP
Sbjct: 3 SGS-SGTGVKPYMCNECGKAFSVYSSLTTH-QVIHT------------------GEKPSG 42
Query: 690 CN 691
+
Sbjct: 43 PS 44
Score = 30.2 bits (69), Expect = 0.24
Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSETRPYQCN 211
S + + ++PY C+ C +F H++ +H+ +P +
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQV-IHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.29
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T + C+ C +F + + H+ +HT E+P
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQV-IHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.48
Identities = 7/31 (22%), Positives = 9/31 (29%), Gaps = 1/31 (3%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T +P+ C C F L H
Sbjct: 2 SSGS-SGTGVKPYMCNECGKAFSVYSSLTTH 31
Score = 28.6 bits (65), Expect = 0.71
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TG + ++C CG+ F+ ++ H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTH 31
Score = 28.6 bits (65), Expect = 0.90
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ +PY CN C +F L H H
Sbjct: 6 SGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 27.5 bits (62), Expect = 2.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
P+ C +CGK ++ SSL H
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTH 31
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 6e-13
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 111 VHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TGEKP+ C+ C K+FS H+SL H+ +H+ + S
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEK-PSGPSS 45
Score = 52.9 bits (128), Expect = 2e-09
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 86 AVHLKI----KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCES 126
K + CDVC K FS +LT H+RVH+GEKP S
Sbjct: 1 GSSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45
Score = 45.6 bits (109), Expect = 7e-07
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCE 355
CD+C KAFS +L H++ HSG+KP
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 45.2 bits (108), Expect = 1e-06
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G+KPY C+ C K+F+ +ASL H
Sbjct: 1 GSSGSSGTGEKPYECDVCRKAFSHHASLTQHQ 32
Score = 35.2 bits (82), Expect = 0.004
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ CD+C F ++L QH+ +H+GE+
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 34.8 bits (81), Expect = 0.005
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E Y+CD C K F + +H +R+H EKP
Sbjct: 1 GSSGS-SGTGEKPYECDVCRKAFSHHASLTQH-QRVHS------------------GEKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 31.3 bits (72), Expect = 0.092
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PYECD+C +F + +H R+ HS +P +
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRV--HSGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.13
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C VC + F+ ++ +H
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQH 31
Score = 30.6 bits (70), Expect = 0.19
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
T E+ CD+C +F + +H+R VH+ E+P
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQR-VHSGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.29
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ +PY+C++C +F L QH + H
Sbjct: 6 SGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 28.6 bits (65), Expect = 0.70
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T E+P+ C C F L +H
Sbjct: 3 SGS-SGTGEKPYECDVCRKAFSHHASLTQH 31
Score = 27.5 bits (62), Expect = 2.4
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C C K ++ +SL H
Sbjct: 10 EKPYECDVCRKAFSHHASLTQH 31
Score = 25.9 bits (58), Expect = 7.3
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C C + F ++ +L H+R VHS E
Sbjct: 15 CDVCRKAFSHHASLTQHQR-VHSGEKPSGP 43
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 7e-13
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 111 VHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TG+KP+ C CGK F+Q+S L H+ IHT + S
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHT-GEKPSGPSS 45
Score = 51.7 bits (125), Expect = 5e-09
Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 29/72 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
T +K + C ECGK F +S +L H+
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNS-----------------------------HLARHRG 33
Query: 115 VHTGEKPFVCES 126
+HTGEKP S
Sbjct: 34 IHTGEKPSGPSS 45
Score = 46.3 bits (111), Expect = 4e-07
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G KPY C CGK F QN+ L H
Sbjct: 1 GSSGSSGTGKKPYKCNECGKVFTQNSHLARHR 32
Score = 43.6 bits (104), Expect = 3e-06
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCE 355
C+ CGK F+ ++LA H+ H+G+KP
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.009
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C+ CG F ++S L +HR IHTGE+
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 33.6 bits (78), Expect = 0.012
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + + Y+C+ CGKVF ++ H + IH EKP
Sbjct: 1 GSSGS-SGTGKKPYKCNECGKVFTQNSHLARH-RGIHT------------------GEKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 31.7 bits (73), Expect = 0.070
Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T ++ C+ C F ++ + +H+ +HT E+P
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.086
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T ++P+ C C F ++ HL RH
Sbjct: 3 SGS-SGTGKKPYKCNECGKVFTQNSHLARH 31
Score = 30.9 bits (71), Expect = 0.11
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 197 HRIYVHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ +PY+CN C F + HL +H H
Sbjct: 4 GSS--GTGKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 30.9 bits (71), Expect = 0.13
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PY+C+ C F N +H I H+ +P +
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGI--HTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 1.1
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TG++ + C CG+ FTQ + +H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARH 31
Score = 27.1 bits (61), Expect = 3.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
+ P+ C +CGK++ + S L H
Sbjct: 10 KKPYKCNECGKVFTQNSHLARH 31
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 7e-13
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 111 VHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TGEKP+ C CGK+FS SL +H+ IH+ ++ S
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKK-PSGPSS 45
Score = 51.7 bits (125), Expect = 5e-09
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 86 AVHLKI----KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCES 126
K + C VCGK FS +L+VH+R+H+G+KP S
Sbjct: 1 GSSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
Score = 46.0 bits (110), Expect = 6e-07
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C +CGKAFS + +L+ H++ HSG KP +
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
Score = 44.0 bits (105), Expect = 2e-06
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G+KPY C CGK+F+ SL H
Sbjct: 1 GSSGSSGTGEKPYECSVCGKAFSHRQSLSVHQ 32
Score = 33.3 bits (77), Expect = 0.016
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C +CG F +L H+ IH+G++
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 32.9 bits (76), Expect = 0.023
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E Y+C CGK F ++ + H +RIH +KP
Sbjct: 1 GSSGS-SGTGEKPYECSVCGKAFSHRQSLSVH-QRIHS------------------GKKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 30.6 bits (70), Expect = 0.16
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C VCG+ F+ R ++ H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
Score = 29.8 bits (68), Expect = 0.34
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
T E+ C +C +F + H+R +H+ ++P
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQR-IHSGKKPSGP 43
Score = 29.8 bits (68), Expect = 0.35
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PYEC +C +F H RI HS +P +
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRI--HSGKKPSGPS 44
Score = 28.2 bits (64), Expect = 1.1
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ +PY+C++C +F L H + H
Sbjct: 6 SGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 27.9 bits (63), Expect = 1.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C CGK ++ + SL +H
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVH 31
Score = 27.9 bits (63), Expect = 1.4
Identities = 8/31 (25%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T E+P+ C C F L H
Sbjct: 2 SSGS-SGTGEKPYECSVCGKAFSHRQSLSVH 31
Score = 27.5 bits (62), Expect = 1.9
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C+ CG+ F + +L +H+R +HS +
Sbjct: 15 CSVCGKAFSHRQSLSVHQR-IHSGKKPSGP 43
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 9e-13
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 111 VHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
GEK + C+ CGK FSQ S L H+ +HT
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHT 36
Score = 54.1 bits (131), Expect = 8e-10
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 86 AVHLKI----KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCES 126
K + CDVCGK FS ++L H+RVHTGEKP S
Sbjct: 1 GSSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45
Score = 46.0 bits (110), Expect = 5e-07
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
CD+CGK FS ++L H++ H+G+KP +
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45
Score = 46.0 bits (110), Expect = 6e-07
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+ + G+K Y C+ CGK F+Q++ L+ H
Sbjct: 1 GSSGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
Score = 37.9 bits (89), Expect = 4e-04
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G E Y+CD CGK F +++ H +R+H EKP
Sbjct: 1 GSSGS-SGMGEKCYKCDVCGKEFSQSSHLQTH-QRVHTG------------------EKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 35.6 bits (83), Expect = 0.002
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+ + CD+CG F +SS L H+ +HTGE+
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 34.4 bits (80), Expect = 0.007
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
E+ CD+C F + ++ H+R VHT E+P
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQR-VHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.027
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+ Y+C++C F + HL+ H + H E
Sbjct: 6 SGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGE 38
Score = 32.1 bits (74), Expect = 0.044
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + Y+CD+C F + + H R+ H+ +P +
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRV--HTGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.11
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRH 458
E+ + C C F +S HL+ H
Sbjct: 3 SGS-SGMGEKCYKCDVCGKEFSQSSHLQTH 31
Score = 30.2 bits (69), Expect = 0.19
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
GE+ + C VCG+ F+Q ++ H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
Score = 27.1 bits (61), Expect = 2.9
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E + C CGK +++ S L H
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTH 31
Score = 26.3 bits (59), Expect = 6.3
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C CG+ F + L H+R VH+ E
Sbjct: 15 CDVCGKEFSQSSHLQTHQR-VHTGEKPSGP 43
Score = 26.0 bits (58), Expect = 8.7
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 685 EKPFKCNLCGTGF 697
EK +KC++CG F
Sbjct: 10 EKCYKCDVCGKEF 22
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 64.2 bits (156), Expect = 9e-13
Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 58 IHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVC--------GKVFSCPTNL 109
I + + C + F T L H H+ + + VC GK F L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 110 TVHKRVHTGEKPFVC 124
H RVHTGEK
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 54.2 bits (130), Expect = 2e-09
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 115 VHTGEKPFVCESCGKSFSQHSSLFIH-KMIHTQRQ-------YRYECSHCQKKFFRNSKL 166
+ + +SC ++FS L H M H Y EC K F KL
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 167 TSHLKTHSDLRPYEC 181
+H++ H+ +
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 48.4 bits (115), Expect = 3e-07
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 288 LHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKD----LC----CDMCGKAFSCQTNL 339
+ + + C + ++ H+ H+ + +C C GK+F + L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 340 AAHKKTHSGDKPYVC 354
H + H+G+K
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 47.3 bits (112), Expect = 7e-07
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 6/75 (8%)
Query: 345 THSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKK------RLFQCSQCPKKFYRNSKL 398
++C ++F+ L H H + +C + K F KL
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 399 NAHLKIHTEERACFC 413
H+++HT E++
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 41.1 bits (96), Expect = 9e-05
Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 26/98 (26%)
Query: 762 INGDEPPFACPQCGKLYNKKSSLYMHLSTKH--GKRSEPTVCEACGKHVINIRNHMRQVH 819
I+ + C + ++ L H++ +H G VC
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEE-------------- 64
Query: 820 LYPEVRPHMCDLCGARFKKSSALLQHRPIHTGER-HIC 856
C G FK L+ H +HTGE+
Sbjct: 65 ---------CPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 37.6 bits (87), Expect = 0.002
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 8/63 (12%)
Query: 404 IHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHA--------CQYCSATFKKSDHL 455
I + + C+ +F T +E+ H H C +FK L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 456 KRH 458
H
Sbjct: 79 VNH 81
Score = 36.1 bits (83), Expect = 0.007
Identities = 11/62 (17%), Positives = 16/62 (25%), Gaps = 10/62 (16%)
Query: 822 PEVRPHMCDLCGARFKKSSALLQH-RPIHTGERH---------ICPVCGRGFTQRGAMKK 871
C F L+ H H G CP G+ F + +
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 872 HV 873
H+
Sbjct: 81 HI 82
Score = 35.7 bits (82), Expect = 0.008
Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 22/93 (23%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITW 260
+ C+ +F L H + EHV + ++ W
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTH----------VTMEHVGGPEQN------NHVCYW 62
Query: 261 GVDMVRYQCPMCQIVLKRKDTLRHHLKLHTGEK 293
+CP K K L +H+++HTGEK
Sbjct: 63 E------ECPREGKSFKAKYKLVNHIRVHTGEK 89
Score = 34.9 bits (80), Expect = 0.014
Identities = 17/87 (19%), Positives = 20/87 (22%), Gaps = 27/87 (31%)
Query: 612 CACTDCGRMFYNNGALGIHRRAVHSQENTYQ--------CDPCGKVFPSKKYMREHIKRI 663
C R F L H H C GK F +K + HI R+
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI-RV 84
Query: 664 HINQGRVRKQREPRPPAKPDSEKPFKC 690
H EK
Sbjct: 85 HTG------------------EKSGPS 93
Score = 34.2 bits (78), Expect = 0.031
Identities = 4/36 (11%), Positives = 12/36 (33%)
Query: 634 VHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGR 669
+ + + C + F + + H+ H+
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPE 54
Score = 32.6 bits (74), Expect = 0.11
Identities = 13/67 (19%), Positives = 17/67 (25%), Gaps = 8/67 (11%)
Query: 172 THSDLRPYECDICNASFKTNYERKKHRIYVHSETRPYQ--------CNLCNASFKRPGHL 223
C+ +F T +E H H C SFK L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 224 KQHGKTH 230
H + H
Sbjct: 79 VNHIRVH 85
Score = 32.2 bits (73), Expect = 0.13
Identities = 15/74 (20%), Positives = 21/74 (28%), Gaps = 2/74 (2%)
Query: 571 SNPNRFDCCFCSEIFNLKKDYHEHLKKEH-GQTTSGTRRFQLCACTDCGRMFYNNGALGI 629
C F+ + H+ EH G C G+ F L
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 630 HRRAVHSQENTYQC 643
H R VH+ E +
Sbjct: 81 HIR-VHTGEKSGPS 93
Score = 31.9 bits (72), Expect = 0.22
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 48 SKYSLKNHVRIHTKEKLFIC 67
+KY L NH+R+HT EK
Sbjct: 74 AKYKLVNHIRVHTGEKSGPS 93
Score = 29.2 bits (65), Expect = 1.5
Identities = 6/31 (19%), Positives = 9/31 (29%)
Query: 433 VHTDERPHACQYCSATFKKSDHLKRHSKTAH 463
+ + + C TF L H H
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 62.2 bits (152), Expect = 1e-12
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TGEKPF C CGK FS+ S+L +H +HT + S
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHT-GEKPSGPSS 45
Score = 52.1 bits (126), Expect = 4e-09
Identities = 21/73 (28%), Positives = 24/73 (32%), Gaps = 29/73 (39%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHK 113
+ T EK F C ECGK F S L VH
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRS-----------------------------ALNVHH 32
Query: 114 RVHTGEKPFVCES 126
++HTGEKP S
Sbjct: 33 KLHTGEKPSGPSS 45
Score = 46.7 bits (112), Expect = 3e-07
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G+KP+ C CGK F++ ++L HH
Sbjct: 1 GSSGSSGTGEKPFKCVECGKGFSRRSALNVHH 32
Score = 44.0 bits (105), Expect = 3e-06
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C CGK FS ++ L H K H+G+KP +
Sbjct: 15 CVECGKGFSRRSALNVHHKLHTGEKPSGPSS 45
Score = 34.0 bits (79), Expect = 0.009
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P C CG F + SAL H +HTGE+
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEK 39
Score = 30.2 bits (69), Expect = 0.20
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ +P++C C F R L H K H
Sbjct: 6 SGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 30.2 bits (69), Expect = 0.22
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ C CG+GF++R A+ H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH 31
Score = 29.8 bits (68), Expect = 0.27
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E ++C CGK F + + H ++H EKP
Sbjct: 1 GSSGS-SGTGEKPFKCVECGKGFSRRSALNVH-HKLHT------------------GEKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 29.8 bits (68), Expect = 0.35
Identities = 9/34 (26%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
T E+P C C F + L H K
Sbjct: 2 SSGS-SGTGEKPFKCVECGKGFSRRSALNVHHKL 34
Score = 29.0 bits (66), Expect = 0.57
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T E+ C C F + + H + +HT E+P
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHK-LHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.75
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E PF C +CGK ++++S+L +H
Sbjct: 10 EKPFKCVECGKGFSRRSALNVH 31
Score = 27.5 bits (62), Expect = 2.3
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +P++C C F H ++ H+ +P +
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKL--HTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 4.1
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C +CG+ F AL +H + +H+ E
Sbjct: 15 CVECGKGFSRRSALNVHHK-LHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 6.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEK 293
++C C R+ L H KLHTGEK
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEK 39
Score = 25.9 bits (58), Expect = 8.0
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 685 EKPFKCNLCGTGF 697
EKPFKC CG GF
Sbjct: 10 EKPFKCVECGKGF 22
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 1e-12
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 111 VHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TGEKP+ C CGKSF++ S L +H+ IHT + S
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEK-PSGPSS 45
Score = 50.2 bits (121), Expect = 2e-08
Identities = 19/72 (26%), Positives = 23/72 (31%), Gaps = 29/72 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
T EK + C CGK F S L VH++
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKS-----------------------------QLHVHQQ 33
Query: 115 VHTGEKPFVCES 126
+HTGEKP S
Sbjct: 34 IHTGEKPSGPSS 45
Score = 44.8 bits (107), Expect = 1e-06
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+ + +G+KPY C CGKSF + + L H
Sbjct: 1 GSSGSSGTGEKPYECSICGKSFTKKSQLHVH 31
Score = 44.5 bits (106), Expect = 2e-06
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C +CGK+F+ ++ L H++ H+G+KP +
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
Score = 34.4 bits (80), Expect = 0.006
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C +CG F K S L H+ IHTGE+
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 32.5 bits (75), Expect = 0.031
Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E Y+C CGK F K + H ++IH EKP
Sbjct: 1 GSSGS-SGTGEKPYECSICGKSFTKKSQLHVH-QQIHT------------------GEKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 31.4 bits (72), Expect = 0.10
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
T E+ C IC SF +++ H++ +HT E+P
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQ-IHTGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.11
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C +CG+ FT++ + H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH 31
Score = 31.0 bits (71), Expect = 0.14
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PYEC IC SF + H +I H+ +P +
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQI--HTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.36
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ +PY+C++C SF + L H + H
Sbjct: 6 SGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 29.4 bits (67), Expect = 0.49
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T E+P+ C C +F K L H
Sbjct: 2 SSGS-SGTGEKPYECSICGKSFTKKSQLHVH 31
Score = 28.3 bits (64), Expect = 1.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C CGK + KKS L++H
Sbjct: 10 EKPYECSICGKSFTKKSQLHVH 31
Score = 27.1 bits (61), Expect = 2.5
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C+ CG+ F L +H++ +H+ E
Sbjct: 15 CSICGKSFTKKSQLHVHQQ-IHTGEKPSGP 43
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 1e-12
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TGEKP+ C CGK+F + L H +HTQ S
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQET-LSGPSS 45
Score = 52.1 bits (126), Expect = 3e-09
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCES 126
K +SC+VCGK F +L H RVHT E S
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
Score = 45.6 bits (109), Expect = 8e-07
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G+KPY C CGK+F +A L H
Sbjct: 1 GSSGSSGTGEKPYSCNVCGKAFVLSAHLNQHL 32
Score = 44.8 bits (107), Expect = 1e-06
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C++CGKAF +L H + H+ + +
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
Score = 35.2 bits (82), Expect = 0.004
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C++CG F S+ L QH +HT E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQET 39
Score = 32.5 bits (75), Expect = 0.032
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T E+P++C C F S HL +H
Sbjct: 2 SSGS-SGTGEKPYSCNVCGKAFVLSAHLNQH 31
Score = 31.7 bits (73), Expect = 0.063
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+ +PY CN+C +F HL QH + H E
Sbjct: 6 SGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 31.7 bits (73), Expect = 0.073
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C VCG+ F + +H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQH 31
Score = 30.6 bits (70), Expect = 0.15
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
T E+ C++C +F + +H R VHT E
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLR-VHTQETLSGP 43
Score = 30.2 bits (69), Expect = 0.20
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 20/62 (32%)
Query: 630 HRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFK 689
+ E Y C+ CGK F ++ +H R+H E
Sbjct: 3 SGS-SGTGEKPYSCNVCGKAFVLSAHLNQH-LRVHT------------------QETLSG 42
Query: 690 CN 691
+
Sbjct: 43 PS 44
Score = 29.8 bits (68), Expect = 0.27
Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PY C++C +F + +H R+ H++ +
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRV--HTQETLSGPS 44
Score = 27.5 bits (62), Expect = 2.3
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P++C CGK + + L H
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQH 31
Score = 27.1 bits (61), Expect = 3.1
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCD 644
C CG+ F + L H R VH+QE
Sbjct: 15 CNVCGKAFVLSAHLNQHLR-VHTQETLSGPS 44
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 1e-12
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TGEKP+ C CGK+F+ S+LF H+ IHT + S
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTG-EKPSGPSS 45
Score = 54.1 bits (131), Expect = 8e-10
Identities = 20/72 (27%), Positives = 24/72 (33%), Gaps = 29/72 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
T EK + C ECGK F S NL H++
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRS-----------------------------NLFTHQK 33
Query: 115 VHTGEKPFVCES 126
+HTGEKP S
Sbjct: 34 IHTGEKPSGPSS 45
Score = 46.0 bits (110), Expect = 5e-07
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C CGKAF+ ++NL H+K H+G+KP +
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKPSGPSS 45
Score = 45.6 bits (109), Expect = 7e-07
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G+KPY C CGK+F ++L H
Sbjct: 1 GSSGSSGTGEKPYRCAECGKAFTDRSNLFTHQ 32
Score = 34.8 bits (81), Expect = 0.005
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C CG F S L H+ IHTGE+
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 32.5 bits (75), Expect = 0.038
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C CG+ FT R + H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
Score = 30.6 bits (70), Expect = 0.16
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T E+ C C +F + + H++ +HT E+P
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQK-IHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.28
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
G + E Y+C CGK F + + H ++IH
Sbjct: 1 GSSGS-SGTGEKPYRCAECGKAFTDRSNLFTH-QKIH 35
Score = 29.4 bits (67), Expect = 0.37
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ +PY+C C +F +L H K H
Sbjct: 6 SGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 29.0 bits (66), Expect = 0.56
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQC 210
S + + +PY C C +F H +I H+ +P
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKI--HTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.89
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +CGK + +S+L+ H
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTH 31
Score = 28.2 bits (64), Expect = 1.00
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T E+P+ C C F +L H
Sbjct: 3 SGS-SGTGEKPYRCAECGKAFTDRSNLFTH 31
Score = 26.3 bits (59), Expect = 5.9
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C +CG+ F + L H++ +H+ E
Sbjct: 15 CAECGKAFTDRSNLFTHQK-IHTGEKPSGP 43
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 1e-12
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TGEKP++C CGK+F+ S+L H+ IHT +Q S
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHT-KQKPSGPSS 45
Score = 52.9 bits (128), Expect = 2e-09
Identities = 19/73 (26%), Positives = 25/73 (34%), Gaps = 29/73 (39%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHK 113
+ T EK +IC ECGK F S NL H+
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRS-----------------------------NLIKHQ 32
Query: 114 RVHTGEKPFVCES 126
++HT +KP S
Sbjct: 33 KIHTKQKPSGPSS 45
Score = 46.0 bits (110), Expect = 6e-07
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C CGKAF+ ++NL H+K H+ KP +
Sbjct: 15 CAECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45
Score = 46.0 bits (110), Expect = 6e-07
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G+KPY+C CGK+F ++L H
Sbjct: 1 GSSGSSGTGEKPYICAECGKAFTIRSNLIKHQ 32
Score = 35.2 bits (82), Expect = 0.004
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P++C CG F S L++H+ IHT ++
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQK 39
Score = 32.1 bits (74), Expect = 0.049
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ +IC CG+ FT R + KH
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKH 31
Score = 31.7 bits (73), Expect = 0.067
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T E+ C C +F + + KH++ +HT ++P
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQK-IHTKQKPSGP 43
Score = 30.2 bits (69), Expect = 0.20
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E Y C CGK F + + +H ++IH +KP
Sbjct: 1 GSSGS-SGTGEKPYICAECGKAFTIRSNLIKH-QKIHT------------------KQKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 30.2 bits (69), Expect = 0.23
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PY C C +F KH +I H++ +P +
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKI--HTKQKPSGPS 44
Score = 29.4 bits (67), Expect = 0.39
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
T E+P+ C C F +L +H K
Sbjct: 3 SGS-SGTGEKPYICAECGKAFTIRSNLIKHQKI 34
Score = 29.4 bits (67), Expect = 0.39
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ +PY C C +F +L +H K H
Sbjct: 6 SGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 28.2 bits (64), Expect = 1.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +CGK + +S+L H
Sbjct: 10 EKPYICAECGKAFTIRSNLIKH 31
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 61.8 bits (151), Expect = 1e-12
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
TGEKP+ CE CGK F L+ H M+HT
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHT 36
Score = 55.2 bits (134), Expect = 3e-10
Identities = 21/73 (28%), Positives = 24/73 (32%), Gaps = 29/73 (39%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHK 113
+ T EK + CEECGK F C +L H
Sbjct: 2 SSGSSGTGEKPYKCEECGK-----------------------------GFICRRDLYTHH 32
Query: 114 RVHTGEKPFVCES 126
VHTGEKP S
Sbjct: 33 MVHTGEKPSGPSS 45
Score = 48.3 bits (116), Expect = 9e-08
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G+KPY CE CGK F L HH
Sbjct: 1 GSSGSSGTGEKPYKCEECGKGFICRRDLYTHH 32
Score = 47.2 bits (113), Expect = 2e-07
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C+ CGK F C+ +L H H+G+KP +
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKPSGPSS 45
Score = 34.1 bits (79), Expect = 0.010
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C+ CG F L H +HTGE+
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEK 39
Score = 33.3 bits (77), Expect = 0.020
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E Y+C+ CGK F ++ + H +H EKP
Sbjct: 1 GSSGS-SGTGEKPYKCEECGKGFICRRDLYTH-HMVHT------------------GEKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 31.0 bits (71), Expect = 0.14
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T E+ C+ C F ++ H VHT E+P
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHM-VHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.27
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C CG+GF R + H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTH 31
Score = 29.8 bits (68), Expect = 0.33
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PY+C+ C F + H + H+ +P +
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMV--HTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.37
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T E+P+ C+ C F L H
Sbjct: 3 SGS-SGTGEKPYKCEECGKGFICRRDLYTH 31
Score = 28.7 bits (65), Expect = 0.75
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ +PY+C C F L H H
Sbjct: 6 SGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 27.5 bits (62), Expect = 1.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +CGK + + LY H
Sbjct: 10 EKPYKCEECGKGFICRRDLYTH 31
Score = 25.6 bits (57), Expect = 8.9
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C +CG+ F L H VH+ E
Sbjct: 15 CEECGKGFICRRDLYTHHM-VHTGEKPSGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 61.7 bits (151), Expect = 1e-12
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 111 VHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
TGEKP+ C C K+F+ S+L +H+ HT
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHT 36
Score = 52.5 bits (127), Expect = 2e-09
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 86 AVHLKI----KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVC 124
K + C+ C K F+ +NL VH+R HTGE
Sbjct: 1 GSSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 47.1 bits (113), Expect = 2e-07
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
C+ C KAF+ ++NL H++TH+G+
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 45.2 bits (108), Expect = 9e-07
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+ + +G+KPY C C K+F ++L H
Sbjct: 1 GSSGSSGTGEKPYECNECQKAFNTKSNLMVH 31
Score = 33.6 bits (78), Expect = 0.015
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C+ C F S L+ H+ HTGE
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGES 39
Score = 31.7 bits (73), Expect = 0.068
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
G + E Y+C+ C K F +K + H +R H
Sbjct: 1 GSSGS-SGTGEKPYECNECQKAFNTKSNLMVH-QRTH 35
Score = 30.5 bits (70), Expect = 0.15
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+ +PY+CN C +F +L H +TH E
Sbjct: 6 SGTGEKPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 29.4 bits (67), Expect = 0.40
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T E+ C+ C +F T + + H+R HT E +
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQR-THTGESGPSS 43
Score = 29.0 bits (66), Expect = 0.53
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +C K +N KS+L +H
Sbjct: 10 EKPYECNECQKAFNTKSNLMVH 31
Score = 29.0 bits (66), Expect = 0.57
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
T E+P+ C C F +L H +T
Sbjct: 3 SGS-SGTGEKPYECNECQKAFNTKSNLMVHQRT 34
Score = 27.8 bits (63), Expect = 1.3
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQC 210
S + + +PYEC+ C +F T H R H+
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRT--HTGESGPSS 43
Score = 27.8 bits (63), Expect = 1.5
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C C + F + + H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVH 31
Score = 27.1 bits (61), Expect = 3.1
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEK 293
Y+C CQ K L H + HTGE
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGES 39
Score = 25.9 bits (58), Expect = 7.9
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C +C + F L +H+R H+ E+
Sbjct: 15 CNECQKAFNTKSNLMVHQR-THTGESGPSS 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.7 bits (151), Expect = 1e-12
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TGEKP+ C CGK F+Q+S L H+ IHT + S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEK-PSGPSS 45
Score = 51.3 bits (124), Expect = 7e-09
Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 29/73 (39%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHK 113
+ T EK + C ECGK VF+ ++L H+
Sbjct: 2 SSGSSGTGEKPYKCNECGK-----------------------------VFTQNSHLVRHR 32
Query: 114 RVHTGEKPFVCES 126
+HTGEKP S
Sbjct: 33 GIHTGEKPSGPSS 45
Score = 45.2 bits (108), Expect = 1e-06
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 341 AHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G+KPY C CGK F QN+ L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHR 32
Score = 44.4 bits (106), Expect = 2e-06
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C+ CGK F+ ++L H+ H+G+KP +
Sbjct: 15 CNECGKVFTQNSHLVRHRGIHTGEKPSGPSS 45
Score = 34.4 bits (80), Expect = 0.007
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C+ CG F ++S L++HR IHTGE+
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEK 39
Score = 32.5 bits (75), Expect = 0.038
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E Y+C+ CGKVF ++ H + IH EKP
Sbjct: 1 GSSGS-SGTGEKPYKCNECGKVFTQNSHLVRH-RGIHT------------------GEKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 31.7 bits (73), Expect = 0.065
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T E+ C+ C F ++ + +H+ +HT E+P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRG-IHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.13
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ +PY+CN C F + HL +H H
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 30.5 bits (70), Expect = 0.15
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T E+P+ C C F ++ HL RH
Sbjct: 3 SGS-SGTGEKPYKCNECGKVFTQNSHLVRH 31
Score = 30.5 bits (70), Expect = 0.20
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PY+C+ C F N +H I H+ +P +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGI--HTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 1.1
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C CG+ FTQ + +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRH 31
Score = 27.1 bits (61), Expect = 2.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +CGK++ + S L H
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRH 31
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 2e-12
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
+GEKP+VC+ CGK+F + L H+ IHT + S
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEK-PSGPSS 45
Score = 51.7 bits (125), Expect = 5e-09
Identities = 17/72 (23%), Positives = 23/72 (31%), Gaps = 29/72 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
+ EK ++C+ CGK F L H+R
Sbjct: 3 SGSSGSGEKPYVCDYCGK-----------------------------AFGLSAELVRHQR 33
Query: 115 VHTGEKPFVCES 126
+HTGEKP S
Sbjct: 34 IHTGEKPSGPSS 45
Score = 45.6 bits (109), Expect = 8e-07
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
CD CGKAF L H++ H+G+KP
Sbjct: 15 CDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 8e-07
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 342 HKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ SG+KPYVC+ CGK+F +A L H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQ 32
Score = 36.7 bits (86), Expect = 0.001
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P++CD CG F S+ L++H+ IHTGE+
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEK 39
Score = 32.9 bits (76), Expect = 0.023
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ E+ CD C +F E+ +H+R +HT E+P
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQR-IHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.044
Identities = 17/64 (26%), Positives = 20/64 (31%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G S E Y CD CGK F + H +RIH EKP
Sbjct: 1 GSSGS-SGSGEKPYVCDYCGKAFGLSAELVRH-QRIHT------------------GEKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 31.7 bits (73), Expect = 0.063
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + S +PY CD C +F + E +H RI H+ +P +
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRI--HTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.075
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
S +PY C+ C +F L +H + H
Sbjct: 6 SGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 31.3 bits (72), Expect = 0.077
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRH 458
+ E+P+ C YC F S L RH
Sbjct: 2 SSGS-SGSGEKPYVCDYCGKAFGLSAELVRH 31
Score = 31.3 bits (72), Expect = 0.085
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
+GE+ ++C CG+ F + +H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRH 31
Score = 28.2 bits (64), Expect = 1.3
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C CGK + + L H
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRH 31
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 2e-12
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TGE+ + C CGK+F++ S+L +H+ IHT + S
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEK-PSGPSS 45
Score = 50.2 bits (121), Expect = 2e-08
Identities = 19/72 (26%), Positives = 24/72 (33%), Gaps = 29/72 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
T E+ + C ECGK F S L +H+R
Sbjct: 3 SGSSGTGERHYECSECGKAFARKS-----------------------------TLIMHQR 33
Query: 115 VHTGEKPFVCES 126
+HTGEKP S
Sbjct: 34 IHTGEKPSGPSS 45
Score = 44.4 bits (106), Expect = 2e-06
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+ + +G++ Y C CGK+FA+ ++L H
Sbjct: 1 GSSGSSGTGERHYECSECGKAFARKSTLIMH 31
Score = 43.3 bits (103), Expect = 5e-06
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C CGKAF+ ++ L H++ H+G+KP +
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTGEKPSGPSS 45
Score = 36.7 bits (86), Expect = 0.001
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
R + C CG F + S L+ H+ IHTGE+
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEK 39
Score = 32.5 bits (75), Expect = 0.034
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + R YEC C +F H RI H+ +P +
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRI--HTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.079
Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E Y+C CGK F K + H +RIH EKP
Sbjct: 1 GSSGS-SGTGERHYECSECGKAFARKSTLIMH-QRIHT------------------GEKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 31.3 bits (72), Expect = 0.093
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ R Y+C+ C +F R L H + H
Sbjct: 6 SGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 30.5 bits (70), Expect = 0.14
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
T ER C C +F + + H+R +HT E+P
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQR-IHTGEKPSGP 43
Score = 30.5 bits (70), Expect = 0.15
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGER + C CG+ F ++ + H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMH 31
Score = 30.5 bits (70), Expect = 0.17
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
T ER + C C F + L H +
Sbjct: 2 SSGS-SGTGERHYECSECGKAFARKSTLIMHQRI 34
Score = 28.6 bits (65), Expect = 0.93
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E + C +CGK + +KS+L MH
Sbjct: 10 ERHYECSECGKAFARKSTLIMH 31
Score = 26.3 bits (59), Expect = 5.9
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C++CG+ F L +H+R +H+ E
Sbjct: 15 CSECGKAFARKSTLIMHQR-IHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 7.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEK 293
Y+C C RK TL H ++HTGEK
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEK 39
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 62.3 bits (152), Expect = 2e-12
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 103 FSCPTNLTVHKRVHTGEKPFVC--ESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKF 160
NL + +P+ C ESC + FS+ L H IHT Q ++C C + F
Sbjct: 3 PHPMNNLLNYVV--PKMRPYACPVESCDRRFSRSDELTRHIRIHT-GQKPFQCRICMRNF 59
Query: 161 FRNSKLTSHLKTHS 174
R+ LT+H++TH+
Sbjct: 60 SRSDHLTTHIRTHT 73
Score = 57.7 bits (140), Expect = 9e-11
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 73 QFVTSSALRRHKKAVHLKIKDHSCDV--CGKVFSCPTNLTVHKRVHTGEKPFVCESCGKS 130
+ + L + V K++ ++C V C + FS LT H R+HTG+KPF C C ++
Sbjct: 2 EPHPMNNLLNY---VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRN 58
Query: 131 FSQHSSLFIHKMIHT 145
FS+ L H HT
Sbjct: 59 FSRSDHLTTHIRTHT 73
Score = 55.0 bits (133), Expect = 7e-10
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 333 FSCQTNLAAHKKTHSGDKPYVC--ETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPK 390
NL + +PY C E+C + F+++ L H H K FQC C +
Sbjct: 3 PHPMNNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRI-HTGQKP--FQCRICMR 57
Query: 391 KFYRNSKLNAHLKIHT 406
F R+ L H++ HT
Sbjct: 58 NFSRSDHLTTHIRTHT 73
Score = 53.5 bits (129), Expect = 3e-09
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 391 KFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFK 450
+ + + L ++ AC + C+ F +E+ +H R +HT ++P C+ C F
Sbjct: 2 EPHPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFS 60
Query: 451 KSDHLKRHSKT 461
+SDHL H +T
Sbjct: 61 RSDHLTTHIRT 71
Score = 52.3 bits (126), Expect = 6e-09
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 162 RNSKLTSHLKTHSDLRPYECDI--CNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKR 219
+ L +++ RPY C + C+ F + E +H +H+ +P+QC +C +F R
Sbjct: 5 PMNNLLNYVVPKM--RPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSR 61
Query: 220 PGHLKQHGKTH 230
HL H +TH
Sbjct: 62 SDHLTTHIRTH 72
Score = 46.9 bits (112), Expect = 4e-07
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 329 CGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
C + FS L H + H+G KP+ C C ++F+++ L H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68
Score = 45.8 bits (109), Expect = 1e-06
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 812 RNHMRQVHLYPEVRPHMCDL--CGARFKKSSALLQHRPIHTGER-HICPVCGRGFTQRGA 868
+ ++ P++RP+ C + C RF +S L +H IHTG++ C +C R F++
Sbjct: 5 PMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDH 64
Query: 869 MKKHVST 875
+ H+ T
Sbjct: 65 LTTHIRT 71
Score = 43.4 bits (103), Expect = 9e-06
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 52 LKNHVRIHTKEKLFICEECGKQFVTSSALRRHKK 85
L H+RIHT +K F C C + F S L H +
Sbjct: 37 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 38.4 bits (90), Expect = 5e-04
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 284 HHLKLH--TGEKFVTC--EQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNL 339
++L + + C E C ++ RH++ H K C +C + FS +L
Sbjct: 7 NNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHL 65
Query: 340 AAHKKTHS 347
H +TH+
Sbjct: 66 TTHIRTHT 73
Score = 34.2 bits (79), Expect = 0.019
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 612 CACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKR 662
C C R F + L H R +H+ + +QC C + F ++ HI+
Sbjct: 22 CPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 34.2 bits (79), Expect = 0.019
Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 35/101 (34%)
Query: 194 RKKHRIYVHSET--RPYQCNL--CNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKR 249
+ + + RPY C + C+ F R L +H + H +
Sbjct: 4 HPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQK--------------- 48
Query: 250 KENLDSYQITWGVDMVRYQCPMCQIVLKRKDTLRHHLKLHT 290
+QC +C R D L H++ HT
Sbjct: 49 ----------------PFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 33.0 bits (76), Expect = 0.042
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 267 YQCPM--CQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQ 303
Y CP+ C R D L H+++HTG+K C C +
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRN 58
Score = 28.4 bits (64), Expect = 1.9
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 824 VRPHMCDLCGARFKKSSALLQHRPIHT 850
+P C +C F +S L H HT
Sbjct: 47 QKPFQCRICMRNFSRSDHLTTHIRTHT 73
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 61.4 bits (150), Expect = 2e-12
Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TGEKPF C CGKSFS S L H+ IHT + S
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEK-PSGPSS 45
Score = 52.5 bits (127), Expect = 3e-09
Identities = 21/72 (29%), Positives = 24/72 (33%), Gaps = 29/72 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
T EK F C ECGK FS + L H+R
Sbjct: 3 SGSSGTGEKPFECAECGK-----------------------------SFSISSQLATHQR 33
Query: 115 VHTGEKPFVCES 126
+HTGEKP S
Sbjct: 34 IHTGEKPSGPSS 45
Score = 45.2 bits (108), Expect = 1e-06
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C CGK+FS + LA H++ H+G+KP +
Sbjct: 15 CAECGKSFSISSQLATHQRIHTGEKPSGPSS 45
Score = 43.3 bits (103), Expect = 5e-06
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 342 HKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+ +G+KP+ C CGKSF+ ++ L H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATH 31
Score = 35.6 bits (83), Expect = 0.003
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P C CG F SS L H+ IHTGE+
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEK 39
Score = 31.7 bits (73), Expect = 0.061
Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T E+P C C +F S L H
Sbjct: 2 SSGS-SGTGEKPFECAECGKSFSISSQLATH 31
Score = 30.9 bits (71), Expect = 0.14
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ +P++C C SF L H + H
Sbjct: 6 SGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 30.9 bits (71), Expect = 0.14
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
G + E ++C CGK F + H +RIH
Sbjct: 1 GSSGS-SGTGEKPFECAECGKSFSISSQLATH-QRIH 35
Score = 29.8 bits (68), Expect = 0.33
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
T E+ C C SF +++ H+R +HT E+P
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQR-IHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.36
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQC 210
S + + +P+EC C SF + + H RI H+ +P
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRI--HTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.71
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ C CG+ F+ + H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATH 31
Score = 27.9 bits (63), Expect = 1.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E PF C +CGK ++ S L H
Sbjct: 10 EKPFECAECGKSFSISSQLATH 31
Score = 26.3 bits (59), Expect = 6.1
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C +CG+ F + L H+R +H+ E
Sbjct: 15 CAECGKSFSISSQLATHQR-IHTGEKPSGP 43
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 61.4 bits (150), Expect = 2e-12
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
GEKP+ C+ CGK+FSQ SL +H +HT
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHT 35
Score = 47.6 bits (114), Expect = 1e-07
Identities = 16/68 (23%), Positives = 20/68 (29%), Gaps = 29/68 (42%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
EK + C++CGK F +L VH R
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKG-----------------------------SLIVHIR 32
Query: 115 VHTGEKPF 122
VHTG P
Sbjct: 33 VHTGSGPS 40
Score = 46.8 bits (112), Expect = 2e-07
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 341 AHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ G+KPY C+ CGK+F+Q SL H
Sbjct: 1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHI 31
Score = 42.2 bits (100), Expect = 1e-05
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPY 352
CD CGKAFS + +L H + H+G P
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 35.2 bits (82), Expect = 0.003
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ CD CG F + +L+ H +HTG
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSG 38
Score = 31.4 bits (72), Expect = 0.069
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
GE+ + C CG+ F+Q+G++ H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVH 30
Score = 31.4 bits (72), Expect = 0.072
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 630 HRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
E Y+CD CGK F K + H R+H
Sbjct: 2 SSG-SSGGEKPYRCDQCGKAFSQKGSLIVH-IRVH 34
Score = 31.4 bits (72), Expect = 0.077
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+PY+C+ C +F + G L H + H
Sbjct: 5 SSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGS 37
Score = 30.2 bits (69), Expect = 0.17
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHA 441
E+ CD C +F + H R VHT P +
Sbjct: 1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIR-VHTGSGPSS 41
Score = 29.8 bits (68), Expect = 0.26
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
E+P+ C C F + L H +
Sbjct: 2 SSG-SSGGEKPYRCDQCGKAFSQKGSLIVHIRV 33
Score = 29.5 bits (67), Expect = 0.43
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C QCGK +++K SL +H
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVH 30
Score = 25.6 bits (57), Expect = 8.8
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 169 HLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPY 208
+ +PY CD C +F H R+ H+ + P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRV--HTGSGPS 40
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 2e-12
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECS 154
TGEKP+ C CGK+F HS+L H++IHT + S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHT-GEKPSGPS 44
Score = 54.8 bits (133), Expect = 4e-10
Identities = 20/72 (27%), Positives = 24/72 (33%), Gaps = 29/72 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
T EK + C ECGK F +NLT H+
Sbjct: 3 SGSSGTGEKPYKCNECGK-----------------------------AFRAHSNLTTHQV 33
Query: 115 VHTGEKPFVCES 126
+HTGEKP S
Sbjct: 34 IHTGEKPSGPSS 45
Score = 46.0 bits (110), Expect = 6e-07
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCE 355
C+ CGKAF +NL H+ H+G+KP
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 9e-07
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G+KPY C CGK+F +++L H
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRAHSNLTTHQ 32
Score = 34.4 bits (80), Expect = 0.006
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C+ CG F+ S L H+ IHTGE+
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
Score = 32.5 bits (75), Expect = 0.032
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E Y+C+ CGK F + + H + IH EKP
Sbjct: 1 GSSGS-SGTGEKPYKCNECGKAFRAHSNLTTH-QVIHT------------------GEKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 31.3 bits (72), Expect = 0.076
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T E+ C+ C +F+ + + H+ +HT E+P
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQV-IHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.18
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C CG+ F + H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTH 31
Score = 30.6 bits (70), Expect = 0.18
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ +PY+CN C +F+ +L H H
Sbjct: 6 SGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 29.8 bits (68), Expect = 0.31
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PY+C+ C +F+ + H I H+ +P +
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVI--HTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.38
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T E+P+ C C F+ +L H
Sbjct: 3 SGS-SGTGEKPYKCNECGKAFRAHSNLTTH 31
Score = 27.5 bits (62), Expect = 2.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +CGK + S+L H
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTH 31
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 2e-12
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 111 VHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TGE P+ C CGK+FS+ L H+ H + S
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEK-PSGPSS 45
Score = 50.2 bits (121), Expect = 2e-08
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 86 AVHLKI----KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVC 124
+ C CGK FS L H+R H GEKP
Sbjct: 1 GSSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 44.8 bits (107), Expect = 1e-06
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
C CGKAFS + L +H++TH+G+KP
Sbjct: 15 CHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 43.7 bits (104), Expect = 4e-06
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+ + +G+ PY C CGK+F++ L H
Sbjct: 1 GSSGSSGTGENPYECHECGKAFSRKYQLISH 31
Score = 34.8 bits (81), Expect = 0.005
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
P+ C CG F + L+ H+ H GE+
Sbjct: 11 NPYECHECGKAFSRKYQLISHQRTHAGEK 39
Score = 31.7 bits (73), Expect = 0.075
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+ PY+C+ C +F R L H +TH E
Sbjct: 6 SGTGENPYECHECGKAFSRKYQLISHQRTHAGE 38
Score = 31.3 bits (72), Expect = 0.083
Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + EN Y+C CGK F K + H +R H EKP
Sbjct: 1 GSSGS-SGTGENPYECHECGKAFSRKYQLISH-QRTHA------------------GEKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 30.2 bits (69), Expect = 0.22
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + PYEC C +F Y+ H R H+ +P +
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRT--HAGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.27
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
T E P+ C C F + L H +T
Sbjct: 3 SGS-SGTGENPYECHECGKAFSRKYQLISHQRT 34
Score = 29.8 bits (68), Expect = 0.30
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE + C CG+ F+++ + H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISH 31
Score = 28.6 bits (65), Expect = 0.84
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
T E C C +F ++ H+R H E+P
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQR-THAGEKPSGP 43
Score = 28.2 bits (64), Expect = 1.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +CGK +++K L H
Sbjct: 10 ENPYECHECGKAFSRKYQLISH 31
Score = 25.9 bits (58), Expect = 7.8
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEK 293
Y+C C RK L H + H GEK
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEK 39
Score = 25.9 bits (58), Expect = 8.5
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C +CG+ F L H+R H+ E
Sbjct: 15 CHECGKAFSRKYQLISHQR-THAGEKPSGP 43
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 2e-12
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TGEKP+ C CGK+FSQ S L H+ IHT + S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEK-PSGPSS 45
Score = 52.1 bits (126), Expect = 4e-09
Identities = 20/73 (27%), Positives = 25/73 (34%), Gaps = 29/73 (39%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHK 113
+ T EK + C ECGK FS + L H+
Sbjct: 2 SSGSSGTGEKPYKCNECGK-----------------------------AFSQTSKLARHQ 32
Query: 114 RVHTGEKPFVCES 126
R+HTGEKP S
Sbjct: 33 RIHTGEKPSGPSS 45
Score = 44.8 bits (107), Expect = 2e-06
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C+ CGKAFS + LA H++ H+G+KP +
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKPSGPSS 45
Score = 44.0 bits (105), Expect = 3e-06
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 342 HKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ +G+KPY C CGK+F+Q + L H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQ 32
Score = 34.4 bits (80), Expect = 0.007
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C+ CG F ++S L +H+ IHTGE+
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 34.0 bits (79), Expect = 0.010
Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E Y+C+ CGK F + H +RIH EKP
Sbjct: 1 GSSGS-SGTGEKPYKCNECGKAFSQTSKLARH-QRIHT------------------GEKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 31.7 bits (73), Expect = 0.064
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
T E+ C+ C +F +++ +H+R +HT E+P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQR-IHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.12
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T E+P+ C C F ++ L RH
Sbjct: 2 SSGS-SGTGEKPYKCNECGKAFSQTSKLARH 31
Score = 30.9 bits (71), Expect = 0.14
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PY+C+ C +F + +H RI H+ +P +
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRI--HTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.21
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+ +PY+CN C +F + L +H + H E
Sbjct: 6 SGTGEKPYKCNECGKAFSQTSKLARHQRIHTGE 38
Score = 28.3 bits (64), Expect = 0.98
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C CG+ F+Q + +H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARH 31
Score = 27.1 bits (61), Expect = 2.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +CGK +++ S L H
Sbjct: 10 EKPYKCNECGKAFSQTSKLARH 31
Score = 25.6 bits (57), Expect = 9.3
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C +CG+ F L H+R +H+ E
Sbjct: 15 CNECGKAFSQTSKLARHQR-IHTGEKPSGP 43
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 2e-12
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TGE+P C CGKSF Q + L H+ IHT + S
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKP-SGPSS 45
Score = 50.6 bits (122), Expect = 1e-08
Identities = 18/73 (24%), Positives = 23/73 (31%), Gaps = 29/73 (39%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHK 113
+ T E+ C ECGK F +L H+
Sbjct: 2 SSGSSGTGERPHKCNECGK-----------------------------SFIQSAHLIQHQ 32
Query: 114 RVHTGEKPFVCES 126
R+HTGEKP S
Sbjct: 33 RIHTGEKPSGPSS 45
Score = 46.3 bits (111), Expect = 4e-07
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G++P+ C CGKSF Q+A L H
Sbjct: 1 GSSGSSGTGERPHKCNECGKSFIQSAHLIQHQ 32
Score = 43.3 bits (103), Expect = 6e-06
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCE 355
C+ CGK+F +L H++ H+G+KP
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 0.002
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
RPH C+ CG F +S+ L+QH+ IHTGE+
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEK 39
Score = 32.5 bits (75), Expect = 0.038
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
T ER C+ C SF + +H+R +HT E+P
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQR-IHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.054
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ RP++CN C SF + HL QH + H
Sbjct: 6 SGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 31.7 bits (73), Expect = 0.056
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 20/62 (32%)
Query: 630 HRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFK 689
+ E ++C+ CGK F ++ +H +RIH EKP
Sbjct: 3 SGS-SGTGERPHKCNECGKSFIQSAHLIQH-QRIHT------------------GEKPSG 42
Query: 690 CN 691
+
Sbjct: 43 PS 44
Score = 31.3 bits (72), Expect = 0.10
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + RP++C+ C SF + +H RI H+ +P +
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRI--HTGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.10
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T ERPH C C +F +S HL +H
Sbjct: 3 SGS-SGTGERPHKCNECGKSFIQSAHLIQH 31
Score = 30.2 bits (69), Expect = 0.26
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGER H C CG+ F Q + +H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQH 31
Score = 26.7 bits (60), Expect = 4.2
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P C +CGK + + + L H
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQH 31
Score = 25.9 bits (58), Expect = 7.7
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C +CG+ F + L H+R +H+ E
Sbjct: 15 CNECGKSFIQSAHLIQHQR-IHTGEKPSGP 43
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 2e-12
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TG KP+ C CGK+FSQ S L H+ +HT + S
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEK-PSGPSS 45
Score = 51.4 bits (124), Expect = 6e-09
Identities = 20/72 (27%), Positives = 23/72 (31%), Gaps = 29/72 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
T K + C ECGK FS + L H+R
Sbjct: 3 SGSSGTGGKPYQCNECGK-----------------------------AFSQTSKLARHQR 33
Query: 115 VHTGEKPFVCES 126
VHTGEKP S
Sbjct: 34 VHTGEKPSGPSS 45
Score = 45.2 bits (108), Expect = 9e-07
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C+ CGKAFS + LA H++ H+G+KP +
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKPSGPSS 45
Score = 43.7 bits (104), Expect = 3e-06
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 341 AHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G KPY C CGK+F+Q + L H
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQ 32
Score = 35.2 bits (82), Expect = 0.003
Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + YQC+ CGK F + H +R+H EKP
Sbjct: 1 GSSGS-SGTGGKPYQCNECGKAFSQTSKLARH-QRVHT------------------GEKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 34.8 bits (81), Expect = 0.006
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C+ CG F ++S L +H+ +HTGE+
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 31.7 bits (73), Expect = 0.067
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T +P+ C C F ++ L RH
Sbjct: 2 SSGS-SGTGGKPYQCNECGKAFSQTSKLARH 31
Score = 31.7 bits (73), Expect = 0.068
Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PY+C+ C +F + +H R+ H+ +P +
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRV--HTGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.13
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+ +PYQCN C +F + L +H + H E
Sbjct: 6 SGTGGKPYQCNECGKAFSQTSKLARHQRVHTGE 38
Score = 29.8 bits (68), Expect = 0.36
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T + C+ C +F +++ +H+R VHT E+P
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQR-VHTGEKPSGP 43
Score = 28.7 bits (65), Expect = 0.92
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TG + + C CG+ F+Q + +H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARH 31
Score = 27.1 bits (61), Expect = 3.1
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
P+ C +CGK +++ S L H
Sbjct: 10 GKPYQCNECGKAFSQTSKLARH 31
Score = 25.6 bits (57), Expect = 9.3
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C +CG+ F L H+R VH+ E
Sbjct: 15 CNECGKAFSQTSKLARHQR-VHTGEKPSGP 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 2e-12
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TGEKP+ C CGK F+Q+S L H+ IHT + S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEK-PSGPSS 45
Score = 50.6 bits (122), Expect = 1e-08
Identities = 19/72 (26%), Positives = 24/72 (33%), Gaps = 29/72 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
T EK + C ECGK F +S +L H+
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNS-----------------------------HLARHRG 33
Query: 115 VHTGEKPFVCES 126
+HTGEKP S
Sbjct: 34 IHTGEKPSGPSS 45
Score = 46.3 bits (111), Expect = 5e-07
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G+KPY C CGK F QN+ L H
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARHR 32
Score = 44.0 bits (105), Expect = 2e-06
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C+ CGK F+ ++LA H+ H+G+KP +
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 34.4 bits (80), Expect = 0.008
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C+ CG F ++S L +HR IHTGE+
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 32.5 bits (75), Expect = 0.031
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T E+P+ C C F ++ HL RH
Sbjct: 2 SSGS-SGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 32.5 bits (75), Expect = 0.040
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E Y+C+ CGKVF ++ H + IH EKP
Sbjct: 1 GSSGS-SGTGEKPYKCNECGKVFTQNSHLARH-RGIHT------------------GEKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 31.3 bits (72), Expect = 0.077
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T E+ C+ C F ++ + +H+ +HT E+P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.089
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 195 KKHRIYVHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ +PY+CN C F + HL +H H
Sbjct: 2 SSGSS--GTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 30.9 bits (71), Expect = 0.12
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PY+C+ C F N +H I H+ +P +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGI--HTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 1.2
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C CG+ FTQ + +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 26.7 bits (60), Expect = 3.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +CGK++ + S L H
Sbjct: 10 EKPYKCNECGKVFTQNSHLARH 31
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 2e-12
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 111 VHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TGEKP+ C CGKSF + S L +H+ IHT S
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGEN-PSGPSS 45
Score = 50.6 bits (122), Expect = 1e-08
Identities = 19/72 (26%), Positives = 24/72 (33%), Gaps = 29/72 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
T EK + C +CGK F+ S L VH+R
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKS-----------------------------QLHVHQR 33
Query: 115 VHTGEKPFVCES 126
+HTGE P S
Sbjct: 34 IHTGENPSGPSS 45
Score = 44.8 bits (107), Expect = 1e-06
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+ + +G+KPY C CGKSF + + L H
Sbjct: 1 GSSGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 44.1 bits (105), Expect = 3e-06
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C CGK+F ++ L H++ H+G+ P +
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45
Score = 35.6 bits (83), Expect = 0.003
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C CG F K S L H+ IHTGE
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGEN 39
Score = 31.7 bits (73), Expect = 0.060
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T E+ C C SF +++ H+R +HT E P
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQR-IHTGENPSGP 43
Score = 31.0 bits (71), Expect = 0.14
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C CG+ F ++ + H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 30.6 bits (70), Expect = 0.16
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ +PY+C+ C SF + L H + H
Sbjct: 6 SGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 30.6 bits (70), Expect = 0.18
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PYEC C SF + H RI H+ P +
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRI--HTGENPSGPS 44
Score = 30.2 bits (69), Expect = 0.20
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
G + E Y+C CGK F K + H +RIH
Sbjct: 1 GSSGS-SGTGEKPYECSDCGKSFIKKSQLHVH-QRIH 35
Score = 30.2 bits (69), Expect = 0.23
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T E+P+ C C +F K L H
Sbjct: 2 SSGS-SGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 28.3 bits (64), Expect = 1.1
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C+DCG+ F L +H+R +H+ EN
Sbjct: 15 CSDCGKSFIKKSQLHVHQR-IHTGENPSGP 43
Score = 27.9 bits (63), Expect = 1.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C CGK + KKS L++H
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVH 31
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 3e-12
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TGE+P++C CGK+F+ S+L H+ IHT + S
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEK-PSGPSS 45
Score = 50.2 bits (121), Expect = 2e-08
Identities = 19/72 (26%), Positives = 24/72 (33%), Gaps = 29/72 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
T E+ +IC CGK F S NL H++
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRS-----------------------------NLIKHQK 33
Query: 115 VHTGEKPFVCES 126
+HTGEKP S
Sbjct: 34 IHTGEKPSGPSS 45
Score = 44.8 bits (107), Expect = 2e-06
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
C +CGKAF+ ++NL H+K H+G+KP
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 3e-06
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 341 AHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+ + +G++PY+C CGK+F ++L H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKH 31
Score = 36.3 bits (85), Expect = 0.002
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
RP++C +CG F S L++H+ IHTGE+
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 34.8 bits (81), Expect = 0.005
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGER +IC VCG+ FT R + KH
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKH 31
Score = 30.9 bits (71), Expect = 0.14
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + RPY C +C +F KH +I H+ +P +
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKI--HTGEKPSGPS 44
Score = 30.5 bits (70), Expect = 0.17
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E Y C CGK F + + +H ++IH EKP
Sbjct: 1 GSSGS-SGTGERPYICTVCGKAFTDRSNLIKH-QKIHT------------------GEKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 30.5 bits (70), Expect = 0.18
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQ 443
+ T ER C +C +F + + KH++ +HT E+P
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQK-IHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.25
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ RPY C +C +F +L +H K H
Sbjct: 6 SGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 29.8 bits (68), Expect = 0.29
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
T ERP+ C C F +L +H K
Sbjct: 3 SGS-SGTGERPYICTVCGKAFTDRSNLIKHQKI 34
Score = 28.6 bits (65), Expect = 0.80
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C CGK + +S+L H
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKH 31
Score = 26.3 bits (59), Expect = 5.2
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
CT CG+ F + L H++ +H+ E
Sbjct: 15 CTVCGKAFTDRSNLIKHQK-IHTGEKPSGP 43
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 3e-12
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
TGEKP+ C+ C KSF SSL +H+ IHT
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHT 36
Score = 52.1 bits (126), Expect = 4e-09
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVC 124
K + CDVC K F ++LTVH+R+HTGEKP
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 3e-07
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G+KPY C+ C KSF +SL H
Sbjct: 1 GSSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQ 32
Score = 44.8 bits (107), Expect = 1e-06
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
CD+C K+F ++L H++ H+G+KP
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 0.002
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ CD+C F+ S+L H+ IHTGE+
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
Score = 33.6 bits (78), Expect = 0.012
Identities = 15/64 (23%), Positives = 20/64 (31%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E Y+CD C K F + H +RIH EKP
Sbjct: 1 GSSGS-SGTGEKPYKCDVCHKSFRYGSSLTVH-QRIHT------------------GEKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 32.1 bits (74), Expect = 0.043
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQ 443
+ T E+ CD+C+ SF+ + + H+R +HT E+P
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQR-IHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.049
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PY+CD+C+ SF+ H RI H+ +P +
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRI--HTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.058
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C VC + F ++ H
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
Score = 30.2 bits (69), Expect = 0.21
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T E+P+ C C +F+ L H
Sbjct: 3 SGS-SGTGEKPYKCDVCHKSFRYGSSLTVH 31
Score = 30.2 bits (69), Expect = 0.24
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ +PY+C++C+ SF+ L H + H
Sbjct: 6 SGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 27.9 bits (63), Expect = 1.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C C K + SSL +H
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVH 31
Score = 27.1 bits (61), Expect = 2.8
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C C + F +L +H+R +H+ E
Sbjct: 15 CDVCHKSFRYGSSLTVHQR-IHTGEKPSGP 43
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 61.0 bits (149), Expect = 3e-12
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TGEKP+ C+ CGK+FSQ + L H+ +HT + S
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEK-PSGPSS 45
Score = 50.6 bits (122), Expect = 1e-08
Identities = 22/72 (30%), Positives = 26/72 (36%), Gaps = 29/72 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
T EK + C+ECGK FS T+L H+R
Sbjct: 3 SGSSGTGEKPYECKECGK-----------------------------AFSQTTHLIQHQR 33
Query: 115 VHTGEKPFVCES 126
VHTGEKP S
Sbjct: 34 VHTGEKPSGPSS 45
Score = 44.8 bits (107), Expect = 2e-06
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G+KPY C+ CGK+F+Q L H
Sbjct: 1 GSSGSSGTGEKPYECKECGKAFSQTTHLIQHQ 32
Score = 44.0 bits (105), Expect = 3e-06
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
C CGKAFS T+L H++ H+G+KP
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.006
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C CG F +++ L+QH+ +HTGE+
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEK 39
Score = 31.7 bits (73), Expect = 0.075
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+ +PY+C C +F + HL QH + H E
Sbjct: 6 SGTGEKPYECKECGKAFSQTTHLIQHQRVHTGE 38
Score = 31.3 bits (72), Expect = 0.092
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 20/62 (32%)
Query: 630 HRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFK 689
+ E Y+C CGK F ++ +H +R+H EKP
Sbjct: 3 SGS-SGTGEKPYECKECGKAFSQTTHLIQH-QRVHT------------------GEKPSG 42
Query: 690 CN 691
+
Sbjct: 43 PS 44
Score = 31.3 bits (72), Expect = 0.092
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
T E+ C C +F + +H+R VHT E+P
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQR-VHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.099
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T E+P+ C+ C F ++ HL +H
Sbjct: 2 SSGS-SGTGEKPYECKECGKAFSQTTHLIQH 31
Score = 30.6 bits (70), Expect = 0.19
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C CG+ F+Q + +H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQH 31
Score = 30.2 bits (69), Expect = 0.20
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PYEC C +F +H R+ H+ +P +
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRV--HTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 2.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +CGK +++ + L H
Sbjct: 10 EKPYECKECGKAFSQTTHLIQH 31
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 3e-12
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TGEKP+ C CGK+F+Q ++L H+ IHT + S
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEK-PSGPSS 45
Score = 51.7 bits (125), Expect = 5e-09
Identities = 21/73 (28%), Positives = 26/73 (35%), Gaps = 29/73 (39%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHK 113
+ T EK + C ECGK F + NLT H+
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKA-----------------------------NLTQHQ 32
Query: 114 RVHTGEKPFVCES 126
R+HTGEKP S
Sbjct: 33 RIHTGEKPSGPSS 45
Score = 46.0 bits (110), Expect = 6e-07
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G+KPY C CGK+FAQ A+L H
Sbjct: 1 GSSGSSGTGEKPYRCGECGKAFAQKANLTQHQ 32
Score = 44.0 bits (105), Expect = 2e-06
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
C CGKAF+ + NL H++ H+G+KP
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.005
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C CG F + + L QH+ IHTGE+
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 32.5 bits (75), Expect = 0.032
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E Y+C CGK F K + +H +RIH EKP
Sbjct: 1 GSSGS-SGTGEKPYRCGECGKAFAQKANLTQH-QRIHT------------------GEKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 31.3 bits (72), Expect = 0.077
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C CG+ F Q+ + +H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQH 31
Score = 30.9 bits (71), Expect = 0.11
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PY C C +F +H RI H+ +P +
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRI--HTGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.12
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ +PY+C C +F + +L QH + H
Sbjct: 6 SGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 30.2 bits (69), Expect = 0.26
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T E+P+ C C F + +L +H
Sbjct: 3 SGS-SGTGEKPYRCGECGKAFAQKANLTQH 31
Score = 29.0 bits (66), Expect = 0.58
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T E+ C C +F + +H+R +HT E+P
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQR-IHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 1.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +CGK + +K++L H
Sbjct: 10 EKPYRCGECGKAFAQKANLTQH 31
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 3e-12
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
TGEKP+ CE CGK ++ +L +H+ +HT
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHT 36
Score = 52.5 bits (127), Expect = 3e-09
Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 29/72 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
T EK + CE+CGK + + NL +H++
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKF-----------------------------NLDMHQK 33
Query: 115 VHTGEKPFVCES 126
VHTGE+P S
Sbjct: 34 VHTGERPSGPSS 45
Score = 45.2 bits (108), Expect = 9e-07
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G+KPY CE CGK + +L H
Sbjct: 1 GSSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQ 32
Score = 45.2 bits (108), Expect = 1e-06
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
C+ CGK ++ + NL H+K H+G++P
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 34.4 bits (80), Expect = 0.007
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E Y+C+ CGK + SK + H +++H E+P
Sbjct: 1 GSSGS-SGTGEKPYKCEKCGKGYNSKFNLDMH-QKVHT------------------GERP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 34.4 bits (80), Expect = 0.007
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C+ CG + L H+ +HTGER
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGER 39
Score = 31.0 bits (71), Expect = 0.11
Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PY+C+ C + + + H ++ H+ RP +
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKV--HTGERPSGPS 44
Score = 31.0 bits (71), Expect = 0.12
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T E+P+ C+ C + +L H
Sbjct: 2 SSGS-SGTGEKPYKCEKCGKGYNSKFNLDMH 31
Score = 30.6 bits (70), Expect = 0.18
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T E+ C+ C + + + H++ VHT ERP
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQK-VHTGERPSGP 43
Score = 30.2 bits (69), Expect = 0.25
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C CG+G+ + + H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
Score = 29.8 bits (68), Expect = 0.29
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ +PY+C C + +L H K H
Sbjct: 6 SGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 29.4 bits (67), Expect = 0.39
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +CGK YN K +L MH
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMH 31
Score = 26.3 bits (59), Expect = 5.4
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C CG+ + + L +H++ VH+ E
Sbjct: 15 CEKCGKGYNSKFNLDMHQK-VHTGERPSGP 43
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 3e-12
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TGEKP C CGKSFS +S L +H+ IHT S
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGEN-PSGPSS 45
Score = 51.0 bits (123), Expect = 1e-08
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 82 RHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVC 124
K H C CGK FS + L VH+R+HTGE P
Sbjct: 2 SSGS-SGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 43.7 bits (104), Expect = 4e-06
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
C CGK+FS + L H++ H+G+ P
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 42.9 bits (102), Expect = 7e-06
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 342 HKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ +G+KP+ C CGKSF+ N+ L H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQ 32
Score = 35.6 bits (83), Expect = 0.002
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+PH C CG F +S L+ H+ IHTGE
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGEN 39
Score = 31.7 bits (73), Expect = 0.071
Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E ++C CGK F + H +RIH E P
Sbjct: 1 GSSGS-SGTGEKPHECRECGKSFSFNSQLIVH-QRIHT------------------GENP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 31.4 bits (72), Expect = 0.081
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
T E+ C C SF ++++ H+R +HT E P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQR-IHTGENPSGP 43
Score = 31.4 bits (72), Expect = 0.092
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T E+PH C+ C +F + L H
Sbjct: 2 SSGS-SGTGEKPHECRECGKSFSFNSQLIVH 31
Score = 31.0 bits (71), Expect = 0.11
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +P+EC C SF N + H RI H+ P +
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRI--HTGENPSGPS 44
Score = 29.0 bits (66), Expect = 0.64
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+ +P++C C SF L H + H E
Sbjct: 6 SGTGEKPHECRECGKSFSFNSQLIVHQRIHTGE 38
Score = 28.7 bits (65), Expect = 0.81
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ H C CG+ F+ + H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVH 31
Score = 27.5 bits (62), Expect = 2.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P C +CGK ++ S L +H
Sbjct: 10 EKPHECRECGKSFSFNSQLIVH 31
Score = 27.5 bits (62), Expect = 2.2
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C +CG+ F N L +H+R +H+ EN
Sbjct: 15 CRECGKSFSFNSQLIVHQR-IHTGENPSGP 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 3e-12
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 111 VHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECS 154
+GEKP+ C CGK+FSQ S L H+ HT + S
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEK-PSGPS 44
Score = 51.0 bits (123), Expect = 8e-09
Identities = 18/71 (25%), Positives = 23/71 (32%), Gaps = 29/71 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
+ EK + C ECGK FS + L+ H+R
Sbjct: 3 SGSSGSGEKPYGCNECGK-----------------------------TFSQKSILSAHQR 33
Query: 115 VHTGEKPFVCE 125
HTGEKP
Sbjct: 34 THTGEKPSGPS 44
Score = 46.0 bits (110), Expect = 6e-07
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCE 355
C+ CGK FS ++ L+AH++TH+G+KP
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 1e-06
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 341 AHKKTHSGDKPYVCETCGKSFAQNASLKYHHDT 373
+ + SG+KPY C CGK+F+Q + L H T
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRT 34
Score = 35.6 bits (83), Expect = 0.003
Identities = 16/64 (25%), Positives = 20/64 (31%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G S E Y C+ CGK F K + H +R H EKP
Sbjct: 1 GSSGS-SGSGEKPYGCNECGKTFSQKSILSAH-QRTHT------------------GEKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 33.3 bits (77), Expect = 0.015
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C+ CG F + S L H+ HTGE+
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEK 39
Score = 31.0 bits (71), Expect = 0.13
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
S +PY CN C +F + L H +TH
Sbjct: 6 SGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 31.0 bits (71), Expect = 0.14
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + S +PY C+ C +F H R H+ +P +
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRT--HTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.17
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
+ E+P+ C C TF + L H +T
Sbjct: 3 SGS-SGSGEKPYGCNECGKTFSQKSILSAHQRT 34
Score = 29.0 bits (66), Expect = 0.52
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
+GE+ + C CG+ F+Q+ + H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAH 31
Score = 28.3 bits (64), Expect = 1.0
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ + E+ C+ C +F + + H+R HT E+P
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQR-THTGEKPSGP 43
Score = 27.9 bits (63), Expect = 1.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +CGK +++KS L H
Sbjct: 10 EKPYGCNECGKTFSQKSILSAH 31
Score = 26.7 bits (60), Expect = 4.2
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C +CG+ F L H+R H+ E
Sbjct: 15 CNECGKTFSQKSILSAHQR-THTGEKPSGP 43
Score = 26.0 bits (58), Expect = 7.0
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEK 293
Y C C +K L H + HTGEK
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEK 39
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 3e-12
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TGE+ + C CGK+F Q S+L +H+ IH + S
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEK-PSGPSS 45
Score = 49.8 bits (120), Expect = 3e-08
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 29/70 (41%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
T E+ + C ECGK F+ S L++H+R
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKS-----------------------------TLSMHQR 33
Query: 115 VHTGEKPFVC 124
+H GEKP
Sbjct: 34 IHRGEKPSGP 43
Score = 44.1 bits (105), Expect = 3e-06
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
C CGKAF ++ L+ H++ H G+KP
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 43.7 bits (104), Expect = 4e-06
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 342 HKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+ +G++ Y C CGK+F Q ++L H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMH 31
Score = 34.4 bits (80), Expect = 0.007
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
R + C CG F + S L H+ IH GE+
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEK 39
Score = 32.5 bits (75), Expect = 0.031
Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E Y+C CGK F K + H +RIH EKP
Sbjct: 1 GSSGS-SGTGERHYECSECGKAFIQKSTLSMH-QRIHR------------------GEKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 31.7 bits (73), Expect = 0.060
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGER + C CG+ F Q+ + H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMH 31
Score = 31.0 bits (71), Expect = 0.13
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + R YEC C +F H RI H +P +
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRI--HRGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.21
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+ R Y+C+ C +F + L H + H E
Sbjct: 6 SGTGERHYECSECGKAFIQKSTLSMHQRIHRGE 38
Score = 30.2 bits (69), Expect = 0.25
Identities = 8/31 (25%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T ER + C C F + L H
Sbjct: 2 SSGS-SGTGERHYECSECGKAFIQKSTLSMH 31
Score = 29.8 bits (68), Expect = 0.31
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
T ER C C +F + + H+R +H E+P
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQR-IHRGEKPSGP 43
Score = 28.3 bits (64), Expect = 1.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E + C +CGK + +KS+L MH
Sbjct: 10 ERHYECSECGKAFIQKSTLSMH 31
Score = 26.7 bits (60), Expect = 3.8
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C++CG+ F L +H+R +H E
Sbjct: 15 CSECGKAFIQKSTLSMHQR-IHRGEKPSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 3e-12
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECS 154
TGEKP++C CGKSF Q S L H+ IHT + S
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKP-SGPS 44
Score = 51.0 bits (123), Expect = 9e-09
Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 29/72 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
T EK +IC ECGK F+ S +L H+R
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKS-----------------------------HLNRHRR 33
Query: 115 VHTGEKPFVCES 126
+HTGEKP S
Sbjct: 34 IHTGEKPSGPSS 45
Score = 47.1 bits (113), Expect = 2e-07
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G+KPY+C CGKSF Q + L H
Sbjct: 1 GSSGSSGTGEKPYICNECGKSFIQKSHLNRHR 32
Score = 44.8 bits (107), Expect = 2e-06
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCE 355
C+ CGK+F +++L H++ H+G+KP
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.007
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P++C+ CG F + S L +HR IHTGE+
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEK 39
Score = 32.9 bits (76), Expect = 0.027
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
T E+P+ C C +F + HL RH +
Sbjct: 2 SSGS-SGTGEKPYICNECGKSFIQKSHLNRHRRI 34
Score = 32.1 bits (74), Expect = 0.046
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ +PY CN C SF + HL +H + H
Sbjct: 6 SGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 32.1 bits (74), Expect = 0.046
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E Y C+ CGK F K ++ H +RIH EKP
Sbjct: 1 GSSGS-SGTGEKPYICNECGKSFIQKSHLNRH-RRIHT------------------GEKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 30.6 bits (70), Expect = 0.17
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PY C+ C SF +H RI H+ +P +
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRI--HTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.18
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T E+ C+ C SF + + +H+R +HT E+P
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRR-IHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.31
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ +IC CG+ F Q+ + +H
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRH 31
Score = 27.5 bits (62), Expect = 2.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +CGK + +KS L H
Sbjct: 10 EKPYICNECGKSFIQKSHLNRH 31
Score = 25.6 bits (57), Expect = 9.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 685 EKPFKCNLCGTGFESDRQVSGHR 707
EKP+ CN CG F ++ HR
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHR 32
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 3e-12
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
TGEK + C+ CGKSFS+ L H+ +H+
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHS 36
Score = 52.5 bits (127), Expect = 3e-09
Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 29/73 (39%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHK 113
+ T EKL+ C+ECGK FS L H+
Sbjct: 2 SSGSSGTGEKLYNCKECGK-----------------------------SFSRAPCLLKHE 32
Query: 114 RVHTGEKPFVCES 126
R+H+GEKP S
Sbjct: 33 RLHSGEKPSGPSS 45
Score = 46.0 bits (110), Expect = 6e-07
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G+K Y C+ CGKSF++ L H
Sbjct: 1 GSSGSSGTGEKLYNCKECGKSFSRAPCLLKHE 32
Score = 44.1 bits (105), Expect = 2e-06
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
C CGK+FS L H++ HSG+KP
Sbjct: 15 CKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 36.0 bits (84), Expect = 0.002
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+ + C CG F ++ LL+H +H+GE+
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGEK 39
Score = 33.3 bits (77), Expect = 0.019
Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E Y C CGK F + +H +R+H EKP
Sbjct: 1 GSSGS-SGTGEKLYNCKECGKSFSRAPCLLKH-ERLHS------------------GEKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 32.9 bits (76), Expect = 0.027
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + + Y C C SF KH R+ HS +P +
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERL--HSGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.083
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+ + Y C C SF R L +H + H+ E
Sbjct: 6 SGTGEKLYNCKECGKSFSRAPCLLKHERLHSGE 38
Score = 31.0 bits (71), Expect = 0.12
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T E+ C C SF + KH+R +H+ E+P
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHER-LHSGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.22
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T E+ + C+ C +F ++ L +H
Sbjct: 3 SGS-SGTGEKLYNCKECGKSFSRAPCLLKH 31
Score = 29.0 bits (66), Expect = 0.55
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C CG+ F++ + KH
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKH 31
Score = 27.9 bits (63), Expect = 1.4
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E + C +CGK +++ L H
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKH 31
Score = 26.3 bits (59), Expect = 5.4
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C +CG+ F L H R +HS E
Sbjct: 15 CKECGKSFSRAPCLLKHER-LHSGEKPSGP 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 3e-12
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
+ EKP+ CE CGK +++ +L +H+ +H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHM 36
Score = 55.6 bits (135), Expect = 2e-10
Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 29/73 (39%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHK 113
+ + EK + CE+CGK + NL +H+
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRL-----------------------------NLDMHQ 32
Query: 114 RVHTGEKPFVCES 126
RVH GEK S
Sbjct: 33 RVHMGEKTSGPSS 45
Score = 46.7 bits (112), Expect = 3e-07
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + S +KPY CE CGK + + +L H
Sbjct: 1 GSSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQ 32
Score = 44.0 bits (105), Expect = 2e-06
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C+ CGK ++ + NL H++ H G+K +
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45
Score = 34.8 bits (81), Expect = 0.005
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C+ CG + + L H+ +H GE+
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 32.5 bits (75), Expect = 0.031
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G S E Y+C+ CGK + + + H +R+H+ EK
Sbjct: 1 GSSGS-SGSVEKPYKCEDCGKGYNRRLNLDMH-QRVHM------------------GEKT 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 32.1 bits (74), Expect = 0.041
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + S +PY+C+ C + H R+ H + +
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRV--HMGEKTSGPS 44
Score = 31.7 bits (73), Expect = 0.061
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
+ E+ + C CG+G+ +R + H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
Score = 31.7 bits (73), Expect = 0.067
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
S +PY+C C + R +L H + H
Sbjct: 6 SGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 30.9 bits (71), Expect = 0.14
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ + E+ C+ C + + H+R VH E+
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQR-VHMGEKTSGP 43
Score = 29.8 bits (68), Expect = 0.32
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRH 458
+ E+P+ C+ C + + +L H
Sbjct: 3 SGS-SGSVEKPYKCEDCGKGYNRRLNLDMH 31
Score = 29.8 bits (68), Expect = 0.36
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C CGK YN++ +L MH
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMH 31
Score = 26.7 bits (60), Expect = 4.0
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C DCG+ + L +H+R VH E T
Sbjct: 15 CEDCGKGYNRRLNLDMHQR-VHMGEKTSGP 43
Score = 26.7 bits (60), Expect = 4.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEK 293
Y+C C R+ L H ++H GEK
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 25.9 bits (58), Expect = 7.5
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 685 EKPFKCNLCGTGF 697
EKP+KC CG G+
Sbjct: 10 EKPYKCEDCGKGY 22
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 3e-12
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TGEKP+ C CGK F+Q+S L H+ +HT + S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGK-PSGPSS 45
Score = 49.8 bits (120), Expect = 3e-08
Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 29/72 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
T EK + C ECGK VF+ ++L H+R
Sbjct: 3 SGSSGTGEKPYKCNECGK-----------------------------VFTQNSHLARHRR 33
Query: 115 VHTGEKPFVCES 126
VHTG KP S
Sbjct: 34 VHTGGKPSGPSS 45
Score = 46.0 bits (110), Expect = 5e-07
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G+KPY C CGK F QN+ L H
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARHR 32
Score = 44.4 bits (106), Expect = 2e-06
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C+ CGK F+ ++LA H++ H+G KP +
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKPSGPSS 45
Score = 34.4 bits (80), Expect = 0.007
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C+ CG F ++S L +HR +HTG +
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGK 39
Score = 33.3 bits (77), Expect = 0.019
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E Y+C+ CGKVF ++ H +R+H KP
Sbjct: 1 GSSGS-SGTGEKPYKCNECGKVFTQNSHLARH-RRVHT------------------GGKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 32.5 bits (75), Expect = 0.035
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T E+P+ C C F ++ HL RH
Sbjct: 2 SSGS-SGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 31.7 bits (73), Expect = 0.060
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T E+ C+ C F ++ + +H+R VHT +P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRR-VHTGGKPSGP 43
Score = 31.3 bits (72), Expect = 0.079
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ +PY+CN C F + HL +H + H
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 31.0 bits (71), Expect = 0.12
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PY+C+ C F N +H R+ H+ +P +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRV--HTGGKPSGPS 44
Score = 28.3 bits (64), Expect = 1.1
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C CG+ FTQ + +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 26.7 bits (60), Expect = 3.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +CGK++ + S L H
Sbjct: 10 EKPYKCNECGKVFTQNSHLARH 31
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 4e-12
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
+GEKP+ C CGK F+Q+S L H IHT + S
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEK-PSGPSS 45
Score = 52.1 bits (126), Expect = 4e-09
Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 29/71 (40%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHK 113
+ + EK + C ECGK VF+ ++LT H
Sbjct: 2 SSGSSGSGEKPYKCNECGK-----------------------------VFTQNSHLTNHW 32
Query: 114 RVHTGEKPFVC 124
R+HTGEKP
Sbjct: 33 RIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 3e-07
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + SG+KPY C CGK F QN+ L H
Sbjct: 1 GSSGSSGSGEKPYKCNECGKVFTQNSHLTNHW 32
Score = 43.6 bits (104), Expect = 4e-06
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
C+ CGK F+ ++L H + H+G+KP
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.008
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C+ CG F ++S L H IHTGE+
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 34.0 bits (79), Expect = 0.009
Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 20/62 (32%)
Query: 630 HRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFK 689
S E Y+C+ CGKVF ++ H RIH EKP
Sbjct: 3 SGS-SGSGEKPYKCNECGKVFTQNSHLTNH-WRIHT------------------GEKPSG 42
Query: 690 CN 691
+
Sbjct: 43 PS 44
Score = 31.7 bits (73), Expect = 0.071
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ + E+ C+ C F ++ + H R +HT E+P
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWR-IHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.096
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
S +PY+CN C F + HL H + H
Sbjct: 6 SGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 30.5 bits (70), Expect = 0.15
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRH 458
+ E+P+ C C F ++ HL H
Sbjct: 3 SGS-SGSGEKPYKCNECGKVFTQNSHLTNH 31
Score = 30.5 bits (70), Expect = 0.16
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + S +PY+C+ C F N H RI H+ +P +
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRI--HTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 1.1
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
+GE+ + C CG+ FTQ + H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNH 31
Score = 27.1 bits (61), Expect = 2.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +CGK++ + S L H
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNH 31
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 4e-12
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
TGEKP+ C CGK+F++ S L IH+ HT
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHT 36
Score = 51.7 bits (125), Expect = 5e-09
Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 29/73 (39%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHK 113
+ T EK + C +CGK F S L +H+
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKS-----------------------------GLHIHQ 32
Query: 114 RVHTGEKPFVCES 126
+ HTGE+ S
Sbjct: 33 QSHTGERHSGPSS 45
Score = 46.0 bits (110), Expect = 6e-07
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G+KPY C CGK+F + + L H
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQ 32
Score = 44.8 bits (107), Expect = 2e-06
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
C CGKAF+ ++ L H+++H+G++
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 33.3 bits (77), Expect = 0.016
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 826 PHMCDLCGARFKKSSALLQHRPIHTGER 853
P+ C CG F + S L H+ HTGER
Sbjct: 12 PYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 30.9 bits (71), Expect = 0.11
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E Y+C CGK F K + H ++ H E+
Sbjct: 1 GSSGS-SGTGEKPYKCSDCGKAFTRKSGLHIH-QQSHT------------------GERH 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 30.2 bits (69), Expect = 0.26
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PY+C C +F H + H+ R +
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQS--HTGERHSGPS 44
Score = 29.8 bits (68), Expect = 0.28
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C CG+ FT++ + H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
Score = 29.8 bits (68), Expect = 0.36
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+ +PY+C+ C +F R L H ++H E
Sbjct: 6 SGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
Score = 29.0 bits (66), Expect = 0.57
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C CGK + +KS L++H
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIH 31
Score = 29.0 bits (66), Expect = 0.59
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
T E+P+ C C F + L H ++
Sbjct: 2 SSGS-SGTGEKPYKCSDCGKAFTRKSGLHIHQQS 34
Score = 27.1 bits (61), Expect = 2.8
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C+DCG+ F L IH++ H+ E
Sbjct: 15 CSDCGKAFTRKSGLHIHQQ-SHTGERHSGP 43
Score = 26.7 bits (60), Expect = 4.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEK 293
Y+C C RK L H + HTGE+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGER 39
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 4e-12
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TGEKP+ C CGK+FS SSL H+ IHT ++ S
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKK-PSGPSS 45
Score = 51.4 bits (124), Expect = 6e-09
Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 29/72 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
T EK + C +CGK FS ++LT H+
Sbjct: 3 SGSSGTGEKPYECNQCGK-----------------------------AFSVRSSLTTHQA 33
Query: 115 VHTGEKPFVCES 126
+HTG+KP S
Sbjct: 34 IHTGKKPSGPSS 45
Score = 45.6 bits (109), Expect = 9e-07
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCE 355
C+ CGKAFS +++L H+ H+G KP
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 44.1 bits (105), Expect = 2e-06
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+ + +G+KPY C CGK+F+ +SL H
Sbjct: 1 GSSGSSGTGEKPYECNQCGKAFSVRSSLTTH 31
Score = 33.3 bits (77), Expect = 0.016
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C+ CG F S+L H+ IHTG++
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 32.1 bits (74), Expect = 0.046
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E Y+C+ CGK F + + H + IH +KP
Sbjct: 1 GSSGS-SGTGEKPYECNQCGKAFSVRSSLTTH-QAIHT------------------GKKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 30.6 bits (70), Expect = 0.18
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C CG+ F+ R ++ H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTH 31
Score = 30.2 bits (69), Expect = 0.21
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PYEC+ C +F H I H+ +P +
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAI--HTGKKPSGPS 44
Score = 29.4 bits (67), Expect = 0.40
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+ +PY+CN C +F L H H +
Sbjct: 6 SGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGK 38
Score = 29.4 bits (67), Expect = 0.43
Identities = 8/31 (25%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T E+P+ C C F L H
Sbjct: 2 SSGS-SGTGEKPYECNQCGKAFSVRSSLTTH 31
Score = 28.7 bits (65), Expect = 0.85
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
T E+ C+ C +F + + H+ +HT ++P
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQA-IHTGKKPSGP 43
Score = 27.5 bits (62), Expect = 2.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C QCGK ++ +SSL H
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTH 31
Score = 26.0 bits (58), Expect = 6.9
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C CG+ F +L H+ +H+ +
Sbjct: 15 CNQCGKAFSVRSSLTTHQA-IHTGKKPSGP 43
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 60.6 bits (148), Expect = 4e-12
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECS 154
TG++P+ C CGK+F SSL H+ HT + S
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEK-PSGPS 44
Score = 50.6 bits (122), Expect = 1e-08
Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 29/70 (41%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
T ++ + C ECGK F T S +L H+R
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKS-----------------------------SLICHRR 33
Query: 115 VHTGEKPFVC 124
HTGEKP
Sbjct: 34 SHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 6e-07
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G +PY C CGK+F +SL H
Sbjct: 1 GSSGSSGTGQRPYECIECGKAFKTKSSLICHR 32
Score = 45.2 bits (108), Expect = 1e-06
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
C CGKAF +++L H+++H+G+KP
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 0.001
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
RP+ C CG FK S+L+ HR HTGE+
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEK 39
Score = 32.1 bits (74), Expect = 0.042
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSETRPYQCN 211
S + + RPYEC C +FKT HR H+ +P +
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHR-RSHTGEKPSGPS 44
Score = 31.4 bits (72), Expect = 0.080
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + + Y+C CGK F +K + H +R H EKP
Sbjct: 1 GSSGS-SGTGQRPYECIECGKAFKTKSSLICH-RRSHT------------------GEKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 31.4 bits (72), Expect = 0.096
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
T +RP+ C C FK L H ++
Sbjct: 2 SSGS-SGTGQRPYECIECGKAFKTKSSLICHRRS 34
Score = 31.4 bits (72), Expect = 0.100
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
T +R C C +FKT + + H+R HT E+P
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRR-SHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.16
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+ RPY+C C +FK L H ++H E
Sbjct: 6 SGTGQRPYECIECGKAFKTKSSLICHRRSHTGE 38
Score = 30.2 bits (69), Expect = 0.21
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TG+R + C CG+ F + ++ H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICH 31
Score = 29.0 bits (66), Expect = 0.61
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
+ P+ C +CGK + KSSL H
Sbjct: 10 QRPYECIECGKAFKTKSSLICH 31
Score = 27.9 bits (63), Expect = 1.5
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C +CG+ F +L HRR H+ E
Sbjct: 15 CIECGKAFKTKSSLICHRR-SHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 9.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEK 293
Y+C C K K +L H + HTGEK
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEK 39
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.7 bits (148), Expect = 4e-12
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TGEKP+ C CGK+F +SS H+ +HT ++ S
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQR-PSGPSS 45
Score = 51.8 bits (125), Expect = 5e-09
Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 29/73 (39%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHK 113
+ T EK + C ECGK F ++ T H+
Sbjct: 2 SSGSSGTGEKPYKCMECGK-----------------------------AFGDNSSCTQHQ 32
Query: 114 RVHTGEKPFVCES 126
R+HTG++P S
Sbjct: 33 RLHTGQRPSGPSS 45
Score = 45.6 bits (109), Expect = 6e-07
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G+KPY C CGK+F N+S H
Sbjct: 1 GSSGSSGTGEKPYKCMECGKAFGDNSSCTQHQ 32
Score = 44.1 bits (105), Expect = 2e-06
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCE 355
C CGKAF ++ H++ H+G +P
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 35.2 bits (82), Expect = 0.003
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C CG F +S+ QH+ +HTG+R
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQR 39
Score = 34.1 bits (79), Expect = 0.010
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E Y+C CGK F +H +R+H ++P
Sbjct: 1 GSSGS-SGTGEKPYKCMECGKAFGDNSSCTQH-QRLHT------------------GQRP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 31.8 bits (73), Expect = 0.058
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PY+C C +F N +H R+ H+ RP +
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRL--HTGQRPSGPS 44
Score = 31.4 bits (72), Expect = 0.087
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T E+ C C +F ++ +H+R +HT +RP
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQR-LHTGQRPSGP 43
Score = 31.0 bits (71), Expect = 0.13
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+ +PY+C C +F QH + H +
Sbjct: 6 SGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQ 38
Score = 29.5 bits (67), Expect = 0.42
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T E+P+ C C F + +H
Sbjct: 3 SGS-SGTGEKPYKCMECGKAFGDNSSCTQH 31
Score = 28.7 bits (65), Expect = 0.73
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C CG+ F + +H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQH 31
Score = 27.5 bits (62), Expect = 2.0
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +CGK + SS H
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQH 31
Score = 27.2 bits (61), Expect = 3.0
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C +CG+ F +N + H+R +H+ +
Sbjct: 15 CMECGKAFGDNSSCTQHQR-LHTGQRPSGP 43
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 4e-12
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
TGEKP+ CE CGK+F S L H+ IHT
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHT 36
Score = 53.3 bits (129), Expect = 2e-09
Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 29/72 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
T EK + CEECGK F+ S L H+R
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDS-----------------------------QLQEHQR 33
Query: 115 VHTGEKPFVCES 126
+HTGEKP S
Sbjct: 34 IHTGEKPSGPSS 45
Score = 45.2 bits (108), Expect = 1e-06
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C+ CGKAF + L H++ H+G+KP +
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKPSGPSS 45
Score = 44.4 bits (106), Expect = 2e-06
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 341 AHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G+KPY CE CGK+F ++ L+ H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQ 32
Score = 35.2 bits (82), Expect = 0.004
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C+ CG F S L +H+ IHTGE+
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEK 39
Score = 34.4 bits (80), Expect = 0.008
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E Y C+ CGK F ++EH +RIH EKP
Sbjct: 1 GSSGS-SGTGEKPYNCEECGKAFIHDSQLQEH-QRIHTG------------------EKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 31.0 bits (71), Expect = 0.13
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T E+P+ C+ C F L+ H
Sbjct: 2 SSGS-SGTGEKPYNCEECGKAFIHDSQLQEH 31
Score = 30.6 bits (70), Expect = 0.19
Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PY C+ C +F + + ++H RI H+ +P +
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRI--HTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.21
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T E+ C+ C +F D+++++H+R +HT E+P
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQR-IHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.30
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ +PY C C +F L++H + H
Sbjct: 6 SGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 29.0 bits (66), Expect = 0.53
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C CG+ F +++H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
Score = 27.9 bits (63), Expect = 1.7
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +CGK + S L H
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEH 31
Score = 26.0 bits (58), Expect = 6.9
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C +CG+ F ++ L H+R +H+ E
Sbjct: 15 CEECGKAFIHDSQLQEHQR-IHTGEKPSGP 43
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 5e-12
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECS 154
TGEKPF C C K+F+ S+L +H+ HT + S
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEK-PSGPS 44
Score = 53.3 bits (129), Expect = 1e-09
Identities = 23/73 (31%), Positives = 25/73 (34%), Gaps = 29/73 (39%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHK 113
+ T EK F C EC K F T S NL VH+
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKS-----------------------------NLIVHQ 32
Query: 114 RVHTGEKPFVCES 126
R HTGEKP S
Sbjct: 33 RTHTGEKPSGPSS 45
Score = 46.3 bits (111), Expect = 4e-07
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C C KAF+ ++NL H++TH+G+KP +
Sbjct: 15 CSECQKAFNTKSNLIVHQRTHTGEKPSGPSS 45
Score = 44.8 bits (107), Expect = 1e-06
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+ + +G+KP+ C C K+F ++L H
Sbjct: 1 GSSGSSGTGEKPFECSECQKAFNTKSNLIVH 31
Score = 33.2 bits (77), Expect = 0.016
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P C C F S L+ H+ HTGE+
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEK 39
Score = 29.8 bits (68), Expect = 0.33
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 20/63 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E ++C C K F +K + H +R H EKP
Sbjct: 1 GSSGS-SGTGEKPFECSECQKAFNTKSNLIVH-QRTHT------------------GEKP 40
Query: 688 FKC 690
Sbjct: 41 SGP 43
Score = 29.4 bits (67), Expect = 0.38
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T E+ C C +F T + + H+R HT E+P
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQR-THTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.43
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ C C + F + + H
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVH 31
Score = 29.0 bits (66), Expect = 0.63
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ +P++C+ C +F +L H +TH
Sbjct: 6 SGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 28.6 bits (65), Expect = 0.71
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E PF C +C K +N KS+L +H
Sbjct: 10 EKPFECSECQKAFNTKSNLIVH 31
Score = 28.2 bits (64), Expect = 1.1
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
T E+P C C F +L H +T
Sbjct: 3 SGS-SGTGEKPFECSECQKAFNTKSNLIVHQRT 34
Score = 27.8 bits (63), Expect = 1.5
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQC 210
S + + +P+EC C +F T H R H+ +P
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRT--HTGEKPSGP 43
Score = 26.7 bits (60), Expect = 3.8
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C++C + F L +H+R H+ E
Sbjct: 15 CSECQKAFNTKSNLIVHQR-THTGEKPSGP 43
Score = 25.5 bits (57), Expect = 9.5
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 685 EKPFKCNLCGTGF 697
EKPF+C+ C F
Sbjct: 10 EKPFECSECQKAF 22
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 60.2 bits (147), Expect = 5e-12
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
TG KP+VC CGK+F S L IH HT
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHT 36
Score = 50.9 bits (123), Expect = 8e-09
Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 29/71 (40%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHK 113
+ T K ++C ECGK F + S L +H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKS-----------------------------YLIIHT 32
Query: 114 RVHTGEKPFVC 124
R HTGE
Sbjct: 33 RTHTGESGPSS 43
Score = 46.3 bits (111), Expect = 4e-07
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDT 373
+ + +G KPYVC CGK+F + L H T
Sbjct: 1 GSSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRT 34
Score = 45.6 bits (109), Expect = 8e-07
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
C+ CGKAF ++ L H +TH+G+
Sbjct: 15 CNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 33.6 bits (78), Expect = 0.013
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 826 PHMCDLCGARFKKSSALLQHRPIHTGER 853
P++C+ CG F+ S L+ H HTGE
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTHTGES 39
Score = 31.3 bits (72), Expect = 0.090
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
G + Y C+ CGK F SK Y+ H R H
Sbjct: 1 GSSGS-SGTGMKPYVCNECGKAFRSKSYLIIH-TRTH 35
Score = 30.9 bits (71), Expect = 0.11
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ +PY CN C +F+ +L H +TH
Sbjct: 6 SGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 30.1 bits (69), Expect = 0.21
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
T +P+ C C F+ +L H++T
Sbjct: 2 SSGS-SGTGMKPYVCNECGKAFRSKSYLIIHTRT 34
Score = 29.8 bits (68), Expect = 0.32
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T + C+ C +F++ + + H R HT E +
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTR-THTGESGPSS 43
Score = 28.2 bits (64), Expect = 1.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
P+ C +CGK + KS L +H
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIH 31
Score = 27.8 bits (63), Expect = 1.6
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TG + ++C CG+ F + + H
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
Score = 27.8 bits (63), Expect = 1.6
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQC 210
S + + ++PY C+ C +F++ H R H+
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRT--HTGESGPSS 43
Score = 26.7 bits (60), Expect = 3.5
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C +CG+ F + L IH R H+ E+
Sbjct: 15 CNECGKAFRSKSYLIIHTR-THTGESGPSS 43
Score = 25.5 bits (57), Expect = 9.2
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEK 293
Y C C + K L H + HTGE
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGES 39
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 5e-12
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
G+K F C C K+F+Q SSL +H+ IHT
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHT 36
Score = 51.7 bits (125), Expect = 5e-09
Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 29/72 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
+KLF C EC K F+ ++LTVH+R
Sbjct: 3 SGSSGAGKKLFKCNECKK-----------------------------TFTQSSSLTVHQR 33
Query: 115 VHTGEKPFVCES 126
+HTGEKP S
Sbjct: 34 IHTGEKPSGPSS 45
Score = 47.5 bits (114), Expect = 2e-07
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G K + C C K+F Q++SL H
Sbjct: 1 GSSGSSGAGKKLFKCNECKKTFTQSSSLTVHQ 32
Score = 43.3 bits (103), Expect = 5e-06
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
C+ C K F+ ++L H++ H+G+KP
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.008
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+ C+ C F +SS+L H+ IHTGE+
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEK 39
Score = 34.0 bits (79), Expect = 0.011
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + + ++C+ C K F + H +RIH EKP
Sbjct: 1 GSSGS-SGAGKKLFKCNECKKTFTQSSSLTVH-QRIHT------------------GEKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 31.3 bits (72), Expect = 0.086
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ ++ C+ C +F + + H+R +HT E+P
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQR-IHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.11
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + + ++C+ C +F + H RI H+ +P +
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRI--HTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.27
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ + ++CN C +F + L H + H
Sbjct: 6 SGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 28.2 bits (64), Expect = 1.0
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
G++ C C + FTQ ++ H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
Score = 28.2 bits (64), Expect = 1.1
Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRH 458
++ C C TF +S L H
Sbjct: 3 SGS-SGAGKKLFKCNECKKTFTQSSSLTVH 31
Score = 28.2 bits (64), Expect = 1.1
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
+ F C +C K + + SSL +H
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVH 31
Score = 27.5 bits (62), Expect = 2.3
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C +C + F + +L +H+R +H+ E
Sbjct: 15 CNECKKTFTQSSSLTVHQR-IHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 7.5
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 685 EKPFKCNLCGTGF 697
+K FKCN C F
Sbjct: 10 KKLFKCNECKKTF 22
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 61.2 bits (149), Expect = 5e-12
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 77 SSALRRHKKAVHLKIKDHSCDV--CGKVFSCPTNLTVHKRVHTGEKPFVC--ESCGKSFS 132
SS + +I+ H C CGK + ++L H R HTGEKPF C + C + F+
Sbjct: 2 SSGSSGPQID-SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFA 60
Query: 133 QHSSLFIHKMIH 144
+ L H+ H
Sbjct: 61 RSDELSRHRRTH 72
Score = 48.5 bits (116), Expect = 1e-07
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 396 SKLNAHLKIHTEERACFCDI--CNHSFKTDNEVKKHKRFVHTDERPHACQY--CSATFKK 451
S + + R+ C C ++ + +K H R HT E+P +C + C F +
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTR-THTGEKPFSCSWKGCERRFAR 61
Query: 452 SDHLKRHSKT 461
SD L RH +T
Sbjct: 62 SDELSRHRRT 71
Score = 45.8 bits (109), Expect = 1e-06
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 315 KSVHLKIKDLCCDM--CGKAFSCQTNLAAHKKTHSGDKPYVC--ETCGKSFAQNASLKYH 370
+ +I+ C CGK + ++L AH +TH+G+KP+ C + C + FA++ L H
Sbjct: 9 QIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
Score = 42.0 bits (99), Expect = 3e-05
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 337 TNLAAHKKTHSGDKPYVC--ETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQ--CPKKF 392
+ + + S + ++C CGK++ +++ LK H T H K F CS C ++F
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRT-HTGEKP--FSCSWKGCERRF 59
Query: 393 YRNSKLNAHLKIH 405
R+ +L+ H + H
Sbjct: 60 ARSDELSRHRRTH 72
Score = 41.6 bits (98), Expect = 4e-05
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 164 SKLTSHLKTHSDLRPYECDI--CNASFKTNYERKKHRIYVHSETRPYQCNL--CNASFKR 219
S + S +R + C C ++ + K H H+ +P+ C+ C F R
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAH-TRTHTGEKPFSCSWKGCERRFAR 61
Query: 220 PGHLKQHGKTH 230
L +H +TH
Sbjct: 62 SDELSRHRRTH 72
Score = 41.6 bits (98), Expect = 4e-05
Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 29/94 (30%)
Query: 107 TNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKL 166
+ + + + + +C G C K +F++S L
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPG---------------------------CGKTYFKSSHL 35
Query: 167 TSHLKTHSDLRPYECDI--CNASFKTNYERKKHR 198
+H +TH+ +P+ C C F + E +HR
Sbjct: 36 KAHTRTHTGEKPFSCSWKGCERRFARSDELSRHR 69
Score = 41.6 bits (98), Expect = 4e-05
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 822 PEVRPHMCDL--CGARFKKSSALLQHRPIHTGER-HIC--PVCGRGFTQRGAMKKHVST 875
+R H+C CG + KSS L H HTGE+ C C R F + + +H T
Sbjct: 13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Score = 38.5 bits (90), Expect = 4e-04
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 52 LKNHVRIHTKEKLFIC--EECGKQFVTSSALRRHKK 85
LK H R HT EK F C + C ++F S L RH++
Sbjct: 35 LKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
Score = 31.2 bits (71), Expect = 0.20
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 202 HSETRPYQCNL--CNASFKRPGHLKQHGKTHNTE 233
S R + C+ C ++ + HLK H +TH E
Sbjct: 12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGE 45
Score = 28.9 bits (65), Expect = 1.3
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 29/82 (35%)
Query: 267 YQC--PMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDL 324
+ C P C + L+ H + HTGEK +C G
Sbjct: 18 HICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKG----------------------- 54
Query: 325 CCDMCGKAFSCQTNLAAHKKTH 346
C + F+ L+ H++TH
Sbjct: 55 ----CERRFARSDELSRHRRTH 72
Score = 28.1 bits (63), Expect = 2.4
Identities = 22/86 (25%), Positives = 26/86 (30%), Gaps = 34/86 (39%)
Query: 768 PFAC--PQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPEVR 825
C P CGK Y K S L H T G++
Sbjct: 17 SHICSHPGCGKTYFKSSHLKAHTRTHTGEK------------------------------ 46
Query: 826 PHMCDL--CGARFKKSSALLQHRPIH 849
P C C RF +S L +HR H
Sbjct: 47 PFSCSWKGCERRFARSDELSRHRRTH 72
Score = 27.7 bits (62), Expect = 3.6
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 601 QTTSGTRRFQLCACTDCGRMFYNNGALGIHRRAVHSQENTYQCD--PCGKVFPSKKYMRE 658
Q S R +C+ CG+ ++ + L H R H+ E + C C + F +
Sbjct: 9 QIDSSRIRSHICSHPGCGKTYFKSSHLKAHTR-THTGEKPFSCSWKGCERRFARSDELSR 67
Query: 659 HIKRIH 664
H +R H
Sbjct: 68 H-RRTH 72
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 5e-12
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
+GEKPF CE CGK F+Q+S L H+ +HT
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHT 36
Score = 50.6 bits (122), Expect = 1e-08
Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 29/73 (39%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHK 113
+ + EK F CEECGK+F +S L H+
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNS-----------------------------QLHSHQ 32
Query: 114 RVHTGEKPFVCES 126
RVHTGEKP S
Sbjct: 33 RVHTGEKPSGPSS 45
Score = 46.4 bits (111), Expect = 4e-07
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + SG+KP+ CE CGK F QN+ L H
Sbjct: 1 GSSGSSGSGEKPFKCEECGKRFTQNSQLHSHQ 32
Score = 42.5 bits (101), Expect = 9e-06
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
C+ CGK F+ + L +H++ H+G+KP
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.005
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P C+ CG RF ++S L H+ +HTGE+
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEK 39
Score = 32.5 bits (75), Expect = 0.038
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G S E ++C+ CGK F + H +R+H EKP
Sbjct: 1 GSSGS-SGSGEKPFKCEECGKRFTQNSQLHSH-QRVHT------------------GEKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 31.0 bits (71), Expect = 0.12
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
S +P++C C F + L H + H
Sbjct: 6 SGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 31.0 bits (71), Expect = 0.12
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + S +P++C+ C F N + H R+ H+ +P +
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRV--HTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.19
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRH 458
+ E+P C+ C F ++ L H
Sbjct: 3 SGS-SGSGEKPFKCEECGKRFTQNSQLHSH 31
Score = 30.2 bits (69), Expect = 0.25
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ E+ C+ C F ++++ H+R VHT E+P
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQR-VHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.28
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
+GE+ C CG+ FTQ + H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
Score = 27.9 bits (63), Expect = 1.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E PF C +CGK + + S L+ H
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSH 31
Score = 26.7 bits (60), Expect = 4.3
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C +CG+ F N L H+R VH+ E
Sbjct: 15 CEECGKRFTQNSQLHSHQR-VHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 7.0
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQ 299
++C C + L H ++HTGEK
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
Score = 25.6 bits (57), Expect = 10.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 685 EKPFKCNLCGTGFESDRQVSGH 706
EKPFKC CG F + Q+ H
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSH 31
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.3 bits (147), Expect = 5e-12
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECS 154
GEKP+ C CGK+FS S L IH H+ + S
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEK-PSGPS 44
Score = 52.9 bits (128), Expect = 2e-09
Identities = 18/73 (24%), Positives = 23/73 (31%), Gaps = 29/73 (39%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHK 113
+ EK + C ECGK FS + L +H
Sbjct: 2 SSGSSGAGEKPYGCSECGK-----------------------------AFSSKSYLIIHM 32
Query: 114 RVHTGEKPFVCES 126
R H+GEKP S
Sbjct: 33 RTHSGEKPSGPSS 45
Score = 46.8 bits (112), Expect = 3e-07
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C CGKAFS ++ L H +THSG+KP +
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEKPSGPSS 45
Score = 46.4 bits (111), Expect = 4e-07
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDT 373
+ + +G+KPY C CGK+F+ + L H T
Sbjct: 1 GSSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRT 34
Score = 34.4 bits (80), Expect = 0.007
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C CG F S L+ H H+GE+
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 32.1 bits (74), Expect = 0.044
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
G + E Y C CGK F SK Y+ H R H
Sbjct: 1 GSSGS-SGAGEKPYGCSECGKAFSSKSYLIIH-MRTH 35
Score = 30.6 bits (70), Expect = 0.15
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+ +PY C+ C +F +L H +TH+ E
Sbjct: 6 SGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGE 38
Score = 30.6 bits (70), Expect = 0.16
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ E+ C C +F + + + H R H+ E+P
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMR-THSGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.30
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
E+P+ C C F +L H +T
Sbjct: 3 SGS-SGAGEKPYGCSECGKAFSSKSYLIIHMRT 34
Score = 29.1 bits (66), Expect = 0.64
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQC 210
S + + +PY C C +F + H R HS +P
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRT--HSGEKPSGP 43
Score = 28.3 bits (64), Expect = 1.1
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
GE+ + C CG+ F+ + + H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIH 31
Score = 27.9 bits (63), Expect = 1.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +CGK ++ KS L +H
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIH 31
Score = 27.1 bits (61), Expect = 3.3
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C++CG+ F + L IH R HS E
Sbjct: 15 CSECGKAFSSKSYLIIHMR-THSGEKPSGP 43
Score = 26.0 bits (58), Expect = 8.3
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCE 298
Y C C K L H++ H+GEK
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 60.2 bits (147), Expect = 6e-12
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TGEK + C CGK FS++S L H+ IHT + S
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEK-PSGPSS 45
Score = 52.5 bits (127), Expect = 3e-09
Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 29/72 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
T EK + C ECGK VFS + L+ H++
Sbjct: 3 SGSSGTGEKRYKCNECGK-----------------------------VFSRNSQLSQHQK 33
Query: 115 VHTGEKPFVCES 126
+HTGEKP S
Sbjct: 34 IHTGEKPSGPSS 45
Score = 45.2 bits (108), Expect = 1e-06
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G+K Y C CGK F++N+ L H
Sbjct: 1 GSSGSSGTGEKRYKCNECGKVFSRNSQLSQHQ 32
Score = 45.2 bits (108), Expect = 1e-06
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C+ CGK FS + L+ H+K H+G+KP +
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
Score = 34.8 bits (81), Expect = 0.005
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+ + C+ CG F ++S L QH+ IHTGE+
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 33.6 bits (78), Expect = 0.015
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 20/62 (32%)
Query: 630 HRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFK 689
+ E Y+C+ CGKVF + +H ++IH EKP
Sbjct: 3 SGS-SGTGEKRYKCNECGKVFSRNSQLSQH-QKIHT------------------GEKPSG 42
Query: 690 CN 691
+
Sbjct: 43 PS 44
Score = 31.3 bits (72), Expect = 0.076
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+ + Y+CN C F R L QH K H E
Sbjct: 6 SGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGE 38
Score = 31.3 bits (72), Expect = 0.096
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
T E+ C+ C F ++++ +H++ +HT E+P
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQK-IHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.10
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T E+ + C C F ++ L +H
Sbjct: 2 SSGS-SGTGEKRYKCNECGKVFSRNSQLSQH 31
Score = 30.6 bits (70), Expect = 0.17
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + + Y+C+ C F N + +H +I H+ +P +
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKI--HTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.56
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C CG+ F++ + +H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQH 31
Score = 26.7 bits (60), Expect = 4.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E + C +CGK++++ S L H
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQH 31
Score = 25.6 bits (57), Expect = 9.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 685 EKPFKCNLCGTGF 697
EK +KCN CG F
Sbjct: 10 EKRYKCNECGKVF 22
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 6e-12
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECS 154
GEKP+ C CGKSFS L H + HT R+ S
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHT-REKPSGPS 44
Score = 52.2 bits (126), Expect = 4e-09
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 85 KAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCES 126
+ K + C CGK FS LT H HT EKP S
Sbjct: 4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSS 45
Score = 44.8 bits (107), Expect = 1e-06
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + G+KPY C CGKSF+ + L H
Sbjct: 1 GSSGSSGEGEKPYQCSECGKSFSGSYRLTQHW 32
Score = 43.7 bits (104), Expect = 4e-06
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
C CGK+FS L H TH+ +KP
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 36.4 bits (85), Expect = 0.002
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C CG F S L QH HT E+
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREK 39
Score = 33.7 bits (78), Expect = 0.013
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSETRPYQCN 211
S + +PY+C C SF +Y +H I H+ +P +
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWI-THTREKPSGPS 44
Score = 32.1 bits (74), Expect = 0.044
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+PYQC+ C SF L QH TH
Sbjct: 6 SGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 31.4 bits (72), Expect = 0.095
Identities = 14/64 (21%), Positives = 17/64 (26%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G E YQC CGK F + +H H EKP
Sbjct: 1 GSSGS-SGEGEKPYQCSECGKSFSGSYRLTQH-WITHT------------------REKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 29.4 bits (67), Expect = 0.38
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 433 VHTDERPHACQYCSATFKKSDHLKRHSKT 461
E+P+ C C +F S L +H T
Sbjct: 6 SGEGEKPYQCSECGKSFSGSYRLTQHWIT 34
Score = 28.7 bits (65), Expect = 0.83
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ E+ C C SF + +H HT E+P
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWI-THTREKPSGP 43
Score = 28.3 bits (64), Expect = 1.2
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
GE+ + C CG+ F+ + +H
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQH 31
Score = 27.9 bits (63), Expect = 1.5
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +CGK ++ L H
Sbjct: 10 EKPYQCSECGKSFSGSYRLTQH 31
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 59.9 bits (146), Expect = 6e-12
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
+GEKP+ C CGK+F S L +H+ H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHA 36
Score = 49.8 bits (120), Expect = 3e-08
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 82 RHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVC 124
K + C+ CGK F + L VH+R H G
Sbjct: 2 SSGS-SGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 46.4 bits (111), Expect = 4e-07
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDT 373
+ + SG+KPY C CGK+F + L H T
Sbjct: 1 GSSGSSGSGEKPYECNECGKAFIWKSLLIVHERT 34
Score = 44.4 bits (106), Expect = 2e-06
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
C+ CGKAF ++ L H++TH+G
Sbjct: 15 CNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 32.5 bits (75), Expect = 0.036
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 826 PHMCDLCGARFKKSSALLQHRPIHTGER 853
P+ C+ CG F S L+ H H G
Sbjct: 12 PYECNECGKAFIWKSLLIVHERTHAGVS 39
Score = 31.3 bits (72), Expect = 0.079
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
G S E Y+C+ CGK F K + H +R H
Sbjct: 1 GSSGS-SGSGEKPYECNECGKAFIWKSLLIVH-ERTH 35
Score = 30.6 bits (70), Expect = 0.18
Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ + E+ C+ C +F + + H+R H +
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHER-THAGVSGPSS 43
Score = 29.4 bits (67), Expect = 0.40
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
S +PY+CN C +F L H +TH
Sbjct: 6 SGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 27.9 bits (63), Expect = 1.3
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
+ E+P+ C C F L H +T
Sbjct: 3 SGS-SGSGEKPYECNECGKAFIWKSLLIVHERT 34
Score = 27.9 bits (63), Expect = 1.6
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
+GE+ + C CG+ F + + H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVH 31
Score = 27.5 bits (62), Expect = 2.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +CGK + KS L +H
Sbjct: 10 EKPYECNECGKAFIWKSLLIVH 31
Score = 27.1 bits (61), Expect = 2.8
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQC 210
S + S +PYEC+ C +F H R H+
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERT--HAGVSGPSS 43
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 59.9 bits (146), Expect = 6e-12
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
GE+ C CGK F Q S+ H+ IHT
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHT 36
Score = 52.9 bits (128), Expect = 2e-09
Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 29/73 (39%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHK 113
+ E+ C +CGK F+ +S N H+
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQAS-----------------------------NFIQHR 32
Query: 114 RVHTGEKPFVCES 126
R+HTGEKP S
Sbjct: 33 RIHTGEKPSGPSS 45
Score = 46.4 bits (111), Expect = 4e-07
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + G++ + C CGK F Q ++ H
Sbjct: 1 GSSGSSGHGERGHRCSDCGKFFLQASNFIQHR 32
Score = 41.4 bits (98), Expect = 2e-05
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C CGK F +N H++ H+G+KP +
Sbjct: 15 CSDCGKFFLQASNFIQHRRIHTGEKPSGPSS 45
Score = 39.1 bits (92), Expect = 1e-04
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
R H C CG F ++S +QHR IHTGE+
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGEK 39
Score = 34.0 bits (79), Expect = 0.010
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
ER C C F + +H+R +HT E+P
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRR-IHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.021
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
GER H C CG+ F Q +H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQH 31
Score = 31.4 bits (72), Expect = 0.085
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRH 458
ER H C C F ++ + +H
Sbjct: 2 SSGS-SGHGERGHRCSDCGKFFLQASNFIQH 31
Score = 31.0 bits (71), Expect = 0.12
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
G E ++C CGK F +H +RIH
Sbjct: 1 GSSGS-SGHGERGHRCSDCGKFFLQASNFIQH-RRIH 35
Score = 31.0 bits (71), Expect = 0.12
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 196 KHRIYVHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
R ++C+ C F + + QH + H
Sbjct: 2 SSG-SSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 30.2 bits (69), Expect = 0.26
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + R + C C F +H RI H+ +P +
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRI--HTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 1.5
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E C CGK + + S+ H
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQH 31
Score = 25.6 bits (57), Expect = 9.2
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 685 EKPFKCNLCGTGF 697
E+ +C+ CG F
Sbjct: 10 ERGHRCSDCGKFF 22
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 60.8 bits (147), Expect = 6e-12
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 106 PTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSK 165
+ +++H G++ C CG F + S+L K C C+K + +
Sbjct: 3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRK--------TPMCEKCRKDSCQEAA 54
Query: 166 LTSHLKTHSDLRPY 179
L S +
Sbjct: 55 LNKDEGNESGKKTS 68
Score = 58.9 bits (142), Expect = 3e-11
Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 48 SKYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPT 107
S S +IH ++ C +CG F+ S L R K C+ C K
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKT--------PMCEKCRKDSCQEA 53
Query: 108 NLTVHKRVHTGEKPF 122
L + +G+K
Sbjct: 54 ALNKDEGNESGKKTS 68
Score = 58.1 bits (140), Expect = 7e-11
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 337 TNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNS 396
+ +K H GD+ C CG F + ++ L +++ C +C K + +
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRST----------LSRRKTPMCEKCRKDSCQEA 53
Query: 397 KLNAHLKIHTEER 409
LN + ++
Sbjct: 54 ALNKDEGNESGKK 66
Score = 49.3 bits (117), Expect = 8e-08
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 281 TLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLA 340
+ K+H G++ C +CG F R +S + K C+ C K + L
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGI------IFIR--RSTLSRRKTPMCEKCRKDSCQEAALN 56
Query: 341 AHKKTHSGDKPY 352
+ SG K
Sbjct: 57 KDEGNESGKKTS 68
Score = 40.0 bits (93), Expect = 2e-04
Identities = 11/73 (15%), Positives = 18/73 (24%), Gaps = 8/73 (10%)
Query: 162 RNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPG 221
+ K H R +C C F R S + C C +
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIF--------IRRSTLSRRKTPMCEKCRKDSCQEA 53
Query: 222 HLKQHGKTHNTEN 234
L + + +
Sbjct: 54 ALNKDEGNESGKK 66
Score = 37.3 bits (86), Expect = 0.001
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 7/65 (10%)
Query: 796 SEPTVCEACGKHVINIRNHMRQVHLYPEVRPHMCDLCGARFKKSSALLQHRPIHTGERHI 855
C CG I R+ + MC+ C + +AL + +G++
Sbjct: 16 DRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
Query: 856 CPVCG 860
P G
Sbjct: 69 GPSSG 73
Score = 33.1 bits (75), Expect = 0.049
Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 8/72 (11%)
Query: 394 RNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSD 453
+ KIH +R+ C C F +R + + C+ C +
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIF--------IRRSTLSRRKTPMCEKCRKDSCQEA 53
Query: 454 HLKRHSKTAHKE 465
L + +
Sbjct: 54 ALNKDEGNESGK 65
Score = 33.1 bits (75), Expect = 0.049
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 6/51 (11%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCGRGFTQRGAMKKHVST 875
R C CG F + S L + + +C C + Q A+ K
Sbjct: 17 RSQKCSKCGIIFIRRSTLSRRKT------PMCEKCRKDSCQEAALNKDEGN 61
Score = 30.8 bits (69), Expect = 0.28
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 9/51 (17%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
C+ CG +F RR+ S+ T C+ C K + + + +
Sbjct: 21 CSKCGIIF--------IRRSTLSRRKTPMCEKCRKDSCQEAALNKD-EGNE 62
Score = 30.4 bits (68), Expect = 0.44
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 838 KSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
S + + + IH G+R C CG F +R + +
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR 37
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 6e-12
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TGEKP+ C CGK F +S L H+ IHT + S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEK-PSGPSS 45
Score = 52.9 bits (128), Expect = 2e-09
Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 29/73 (39%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHK 113
+ T EK + C ECGK F +S L+ H+
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNS-----------------------------YLSRHQ 32
Query: 114 RVHTGEKPFVCES 126
R+HTGEKP S
Sbjct: 33 RIHTGEKPSGPSS 45
Score = 43.7 bits (104), Expect = 3e-06
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCE 355
C+ CGK F + L+ H++ H+G+KP
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 43.7 bits (104), Expect = 4e-06
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 342 HKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ +G+KPY C CGK F N+ L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQ 32
Score = 35.2 bits (82), Expect = 0.004
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C+ CG F+ +S L +H+ IHTGE+
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEK 39
Score = 34.4 bits (80), Expect = 0.008
Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E Y+C+ CGKVF Y+ H +RIH EKP
Sbjct: 1 GSSGS-SGTGEKPYKCNECGKVFRHNSYLSRH-QRIHT------------------GEKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 30.9 bits (71), Expect = 0.10
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+ +PY+CN C F+ +L +H + H E
Sbjct: 6 SGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGE 38
Score = 30.9 bits (71), Expect = 0.14
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T E+P+ C C F+ + +L RH
Sbjct: 3 SGS-SGTGEKPYKCNECGKVFRHNSYLSRH 31
Score = 30.9 bits (71), Expect = 0.14
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PY+C+ C F+ N +H RI H+ +P +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRI--HTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.25
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C CG+ F + +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
Score = 30.2 bits (69), Expect = 0.26
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
T E+ C+ C F+ ++ + +H+R +HT E+P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQR-IHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 1.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +CGK++ S L H
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRH 31
Score = 25.9 bits (58), Expect = 7.2
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C +CG++F +N L H+R +H+ E
Sbjct: 15 CNECGKVFRHNSYLSRHQR-IHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 9.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 685 EKPFKCNLCGTGFESDRQVSGH 706
EKP+KCN CG F + +S H
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRH 31
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 6e-12
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECS 154
TGE PF+C CGK F+ ++L IH+ IHT + S
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHT-GERPSGPS 44
Score = 54.0 bits (131), Expect = 8e-10
Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 30/75 (40%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHK 113
+ T E FIC ECGK F + NL +H+
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKT-----------------------------NLIIHQ 32
Query: 114 RVHTGEKPFVCESCG 128
++HTGE+P S G
Sbjct: 33 KIHTGERPSGP-SSG 46
Score = 44.0 bits (105), Expect = 2e-06
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 341 AHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+ + +G+ P++C CGK F +L H
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIH 31
Score = 44.0 bits (105), Expect = 3e-06
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
C CGK F+ +TNL H+K H+G++P
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 35.9 bits (84), Expect = 0.002
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
P +C CG F + L+ H+ IHTGER
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGER 39
Score = 32.9 bits (76), Expect = 0.022
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T E C C F + H++ +HT ERP
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQK-IHTGERPSGP 43
Score = 32.1 bits (74), Expect = 0.052
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + EN + C CGKVF K + H ++IH E+P
Sbjct: 1 GSSGS-SGTGENPFICSECGKVFTHKTNLIIH-QKIHT------------------GERP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 31.7 bits (73), Expect = 0.060
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE IC CG+ FT + + H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIH 31
Score = 31.7 bits (73), Expect = 0.065
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + P+ C C F H +I H+ RP +
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKI--HTGERPSGPS 44
Score = 30.2 bits (69), Expect = 0.25
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ P+ C+ C F +L H K H
Sbjct: 6 SGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 29.0 bits (66), Expect = 0.53
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E PF C +CGK++ K++L +H
Sbjct: 10 ENPFICSECGKVFTHKTNLIIH 31
Score = 28.6 bits (65), Expect = 0.86
Identities = 9/33 (27%), Positives = 10/33 (30%), Gaps = 1/33 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
T E P C C F +L H K
Sbjct: 3 SGS-SGTGENPFICSECGKVFTHKTNLIIHQKI 34
Score = 26.7 bits (60), Expect = 3.6
Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C++CG++F + L IH++ +H+ E
Sbjct: 15 CSECGKVFTHKTNLIIHQK-IHTGERPSGP 43
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 6e-12
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECS 154
TGEKP+ C+ CGK+F S L H +H+ + S
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGER-PSGPS 44
Score = 51.4 bits (124), Expect = 7e-09
Identities = 16/72 (22%), Positives = 22/72 (30%), Gaps = 29/72 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
T EK + C+ CGK F ++L H
Sbjct: 3 SGSSGTGEKPYKCQVCGK-----------------------------AFRVSSHLVQHHS 33
Query: 115 VHTGEKPFVCES 126
VH+GE+P S
Sbjct: 34 VHSGERPSGPSS 45
Score = 45.2 bits (108), Expect = 1e-06
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G+KPY C+ CGK+F ++ L HH
Sbjct: 1 GSSGSSGTGEKPYKCQVCGKAFRVSSHLVQHH 32
Score = 43.7 bits (104), Expect = 3e-06
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C +CGKAF ++L H HSG++P +
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERPSGPSS 45
Score = 36.3 bits (85), Expect = 0.001
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C +CG F+ SS L+QH +H+GER
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGER 39
Score = 32.9 bits (76), Expect = 0.028
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 20/62 (32%)
Query: 630 HRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFK 689
+ E Y+C CGK F ++ +H +H E+P
Sbjct: 3 SGS-SGTGEKPYKCQVCGKAFRVSSHLVQH-HSVHS------------------GERPSG 42
Query: 690 CN 691
+
Sbjct: 43 PS 44
Score = 32.5 bits (75), Expect = 0.031
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
T E+ C +C +F+ + + +H VH+ ERP
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHS-VHSGERPSGP 43
Score = 32.5 bits (75), Expect = 0.035
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+ +PY+C +C +F+ HL QH H+ E
Sbjct: 6 SGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGE 38
Score = 32.5 bits (75), Expect = 0.038
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T E+P+ CQ C F+ S HL +H
Sbjct: 2 SSGS-SGTGEKPYKCQVCGKAFRVSSHLVQH 31
Score = 30.9 bits (71), Expect = 0.11
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C VCG+ F + +H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQH 31
Score = 30.2 bits (69), Expect = 0.21
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PY+C +C +F+ + +H + HS RP +
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSV--HSGERPSGPS 44
Score = 26.7 bits (60), Expect = 4.2
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C CGK + S L H
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQH 31
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 6e-12
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
+GEKP+ C CGK+F +H+ L H+ IHT
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHT 36
Score = 51.3 bits (124), Expect = 7e-09
Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 29/72 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
+ EK + C ECGK F + +L H+R
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHT-----------------------------HLNEHRR 33
Query: 115 VHTGEKPFVCES 126
+HTG +P S
Sbjct: 34 IHTGYRPSGPSS 45
Score = 46.0 bits (110), Expect = 6e-07
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + SG+KPY C CGK+F ++ L H
Sbjct: 1 GSSGSSGSGEKPYKCSECGKAFHRHTHLNEHR 32
Score = 42.1 bits (100), Expect = 1e-05
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 29/71 (40%)
Query: 285 HLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAAHKK 344
+GEK C + CGKAF T+L H++
Sbjct: 3 SGSSGSGEKPYKCSE-----------------------------CGKAFHRHTHLNEHRR 33
Query: 345 THSGDKPYVCE 355
H+G +P
Sbjct: 34 IHTGYRPSGPS 44
Score = 34.4 bits (80), Expect = 0.006
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C CG F + + L +HR IHTG R
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYR 39
Score = 33.6 bits (78), Expect = 0.015
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 20/62 (32%)
Query: 630 HRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFK 689
S E Y+C CGK F ++ EH +RIH +P
Sbjct: 3 SGS-SGSGEKPYKCSECGKAFHRHTHLNEH-RRIHT------------------GYRPSG 42
Query: 690 CN 691
+
Sbjct: 43 PS 44
Score = 32.5 bits (75), Expect = 0.037
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
S +PY+C+ C +F R HL +H + H
Sbjct: 6 SGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGY 38
Score = 32.1 bits (74), Expect = 0.053
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRH 458
+ E+P+ C C F + HL H
Sbjct: 2 SSGS-SGSGEKPYKCSECGKAFHRHTHLNEH 31
Score = 30.2 bits (69), Expect = 0.26
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + S +PY+C C +F + +H RI H+ RP +
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRI--HTGYRPSGPS 44
Score = 30.2 bits (69), Expect = 0.27
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ E+ C C +F + +H+R +HT RP
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRR-IHTGYRPSGP 43
Score = 28.6 bits (65), Expect = 0.71
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
+GE+ + C CG+ F + + +H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEH 31
Score = 26.3 bits (59), Expect = 5.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +CGK +++ + L H
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEH 31
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 59.9 bits (146), Expect = 7e-12
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
TGEKP+ C+ CGKSF S L H+ +H+
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHS 36
Score = 50.6 bits (122), Expect = 1e-08
Identities = 18/71 (25%), Positives = 23/71 (32%), Gaps = 29/71 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
T EK + C+ECGK F + L H+R
Sbjct: 3 SGSSGTGEKPYNCKECGK-----------------------------SFRWASCLLKHQR 33
Query: 115 VHTGEKPFVCE 125
VH+GEKP
Sbjct: 34 VHSGEKPSGPS 44
Score = 46.4 bits (111), Expect = 3e-07
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+ + +G+KPY C+ CGKSF + L H
Sbjct: 1 GSSGSSGTGEKPYNCKECGKSFRWASCLLKH 31
Score = 44.9 bits (107), Expect = 1e-06
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCE 355
C CGK+F + L H++ HSG+KP
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.003
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C CG F+ +S LL+H+ +H+GE+
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEK 39
Score = 33.3 bits (77), Expect = 0.020
Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E Y C CGK F + +H +R+H EKP
Sbjct: 1 GSSGS-SGTGEKPYNCKECGKSFRWASCLLKH-QRVHSG------------------EKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 31.8 bits (73), Expect = 0.053
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PY C C SF+ KH R+ HS +P +
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRV--HSGEKPSGPS 44
Score = 31.8 bits (73), Expect = 0.067
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T E+ C C SF+ + + KH+R VH+ E+P
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQR-VHSGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.13
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T E+P+ C+ C +F+ + L +H
Sbjct: 3 SGS-SGTGEKPYNCKECGKSFRWASCLLKH 31
Score = 29.8 bits (68), Expect = 0.33
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+ +PY C C SF+ L +H + H+ E
Sbjct: 6 SGTGEKPYNCKECGKSFRWASCLLKHQRVHSGE 38
Score = 29.1 bits (66), Expect = 0.49
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C CG+ F + KH
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKH 31
Score = 27.1 bits (61), Expect = 2.4
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +CGK + S L H
Sbjct: 10 EKPYNCKECGKSFRWASCLLKH 31
Score = 26.8 bits (60), Expect = 3.5
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C +CG+ F L H+R VHS E
Sbjct: 15 CKECGKSFRWASCLLKHQR-VHSGEKPSGP 43
Score = 25.6 bits (57), Expect = 8.5
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQ 299
Y C C + L H ++H+GEK
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45
Score = 25.6 bits (57), Expect = 9.2
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 51 SLKNHVRIHTKEKLFICEE 69
L H R+H+ EK
Sbjct: 27 CLLKHQRVHSGEKPSGPSS 45
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 7e-12
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECS 154
TGEKP+ C CGK F ++S L H++IHT + S
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEK-PSGPS 44
Score = 50.9 bits (123), Expect = 1e-08
Identities = 19/72 (26%), Positives = 24/72 (33%), Gaps = 29/72 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
T EK + C ECGK F +S +L H+
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNS-----------------------------HLARHQL 33
Query: 115 VHTGEKPFVCES 126
+HTGEKP S
Sbjct: 34 IHTGEKPSGPSS 45
Score = 45.2 bits (108), Expect = 1e-06
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G+KPY C CGK F +N+ L H
Sbjct: 1 GSSGSSGTGEKPYKCHECGKVFRRNSHLARHQ 32
Score = 43.6 bits (104), Expect = 3e-06
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C CGK F ++LA H+ H+G+KP +
Sbjct: 15 CHECGKVFRRNSHLARHQLIHTGEKPSGPSS 45
Score = 34.4 bits (80), Expect = 0.007
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C CG F+++S L +H+ IHTGE+
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEK 39
Score = 32.1 bits (74), Expect = 0.050
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 20/62 (32%)
Query: 630 HRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFK 689
+ E Y+C CGKVF ++ H + IH EKP
Sbjct: 3 SGS-SGTGEKPYKCHECGKVFRRNSHLARH-QLIHT------------------GEKPSG 42
Query: 690 CN 691
+
Sbjct: 43 PS 44
Score = 31.7 bits (73), Expect = 0.059
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T E+P+ C C F+++ HL RH
Sbjct: 2 SSGS-SGTGEKPYKCHECGKVFRRNSHLARH 31
Score = 31.7 bits (73), Expect = 0.068
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+ +PY+C+ C F+R HL +H H E
Sbjct: 6 SGTGEKPYKCHECGKVFRRNSHLARHQLIHTGE 38
Score = 29.8 bits (68), Expect = 0.30
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PY+C C F+ N +H I H+ +P +
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLI--HTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.52
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T E+ C C F+ ++ + +H+ +HT E+P
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQL-IHTGEKPSGP 43
Score = 27.8 bits (63), Expect = 1.5
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C CG+ F + + +H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARH 31
Score = 27.1 bits (61), Expect = 2.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +CGK++ + S L H
Sbjct: 10 EKPYKCHECGKVFRRNSHLARH 31
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 7e-12
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TGEKPF C CGKS++Q L H+ +HT + S
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKP-SGPSS 45
Score = 50.2 bits (121), Expect = 2e-08
Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 29/72 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
T EK F C ECGK ++ +LT H+R
Sbjct: 3 SGSSGTGEKPFKCGECGK-----------------------------SYNQRVHLTQHQR 33
Query: 115 VHTGEKPFVCES 126
VHTGEKP S
Sbjct: 34 VHTGEKPSGPSS 45
Score = 44.0 bits (105), Expect = 3e-06
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G+KP+ C CGKS+ Q L H
Sbjct: 1 GSSGSSGTGEKPFKCGECGKSYNQRVHLTQHQ 32
Score = 43.7 bits (104), Expect = 3e-06
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
C CGK+++ + +L H++ H+G+KP
Sbjct: 15 CGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.006
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P C CG + + L QH+ +HTGE+
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEK 39
Score = 32.1 bits (74), Expect = 0.045
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ +P++C C S+ + HL QH + H
Sbjct: 6 SGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 32.1 bits (74), Expect = 0.047
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 20/62 (32%)
Query: 630 HRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFK 689
+ E ++C CGK + + ++ +H +R+H EKP
Sbjct: 3 SGS-SGTGEKPFKCGECGKSYNQRVHLTQH-QRVHT------------------GEKPSG 42
Query: 690 CN 691
+
Sbjct: 43 PS 44
Score = 32.1 bits (74), Expect = 0.051
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T E+P C C ++ + HL +H
Sbjct: 2 SSGS-SGTGEKPFKCGECGKSYNQRVHLTQH 31
Score = 31.0 bits (71), Expect = 0.12
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +P++C C S+ +H R+ H+ +P +
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRV--HTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.42
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
T E+ C C S+ + +H+R VHT E+P
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQR-VHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.47
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ C CG+ + QR + +H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
Score = 27.5 bits (62), Expect = 2.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E PF C +CGK YN++ L H
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQH 31
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 7e-12
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECS 154
+GE+P+ C CGK+F +HS L H H + + S
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKS-SGPS 44
Score = 49.1 bits (118), Expect = 4e-08
Identities = 14/72 (19%), Positives = 19/72 (26%), Gaps = 29/72 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
+ E+ + C ECGK F S +L H +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHS-----------------------------HLIEHLK 33
Query: 115 VHTGEKPFVCES 126
H EK S
Sbjct: 34 RHFREKSSGPSS 45
Score = 43.7 bits (104), Expect = 3e-06
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + SG++PY C CGK+F +++ L H
Sbjct: 1 GSSGSSGSGERPYGCNECGKNFGRHSHLIEHL 32
Score = 41.3 bits (98), Expect = 2e-05
Identities = 12/72 (16%), Positives = 19/72 (26%), Gaps = 29/72 (40%)
Query: 285 HLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAAHKK 344
+GE+ C + CGK F ++L H K
Sbjct: 3 SGSSGSGERPYGCNE-----------------------------CGKNFGRHSHLIEHLK 33
Query: 345 THSGDKPYVCET 356
H +K +
Sbjct: 34 RHFREKSSGPSS 45
Score = 37.1 bits (87), Expect = 9e-04
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
S RPY CN C +F R HL +H K H E
Sbjct: 6 SGSGERPYGCNECGKNFGRHSHLIEHLKRHFRE 38
Score = 36.3 bits (85), Expect = 0.001
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
RP+ C+ CG F + S L++H H E+
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRHFREK 39
Score = 32.9 bits (76), Expect = 0.029
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
+ ERP+ C C F + HL H K
Sbjct: 3 SGS-SGSGERPYGCNECGKNFGRHSHLIEHLKR 34
Score = 31.3 bits (72), Expect = 0.088
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + S RPY C+ C +F + +H + H + +
Sbjct: 2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKR--HFREKSSGPS 44
Score = 30.6 bits (70), Expect = 0.17
Identities = 14/64 (21%), Positives = 19/64 (29%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G S E Y C+ CGK F ++ EH + H EK
Sbjct: 1 GSSGS-SGSGERPYGCNECGKNFGRHSHLIEH-LKRHFR------------------EKS 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 29.8 bits (68), Expect = 0.29
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
+GER + C CG+ F + + +H
Sbjct: 2 SSGSSGSGERPYGCNECGKNFGRHSHLIEH 31
Score = 28.6 bits (65), Expect = 0.95
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +CGK + + S L H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEH 31
Score = 27.1 bits (61), Expect = 3.3
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C +CG+ F + L H + H +E +
Sbjct: 15 CNECGKNFGRHSHLIEHLK-RHFREKSSGP 43
Score = 26.7 bits (60), Expect = 3.9
Identities = 11/31 (35%), Positives = 11/31 (35%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEKFVTC 297
Y C C R L HLK H EK
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 8e-12
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
TGEKP+ C CGK+F SSL IH+ H+
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHS 36
Score = 50.6 bits (122), Expect = 1e-08
Identities = 17/72 (23%), Positives = 23/72 (31%), Gaps = 29/72 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
T EK + C ECGK F ++L +H+
Sbjct: 3 SGSSGTGEKPYKCNECGK-----------------------------AFRARSSLAIHQA 33
Query: 115 VHTGEKPFVCES 126
H+GEKP S
Sbjct: 34 THSGEKPSGPSS 45
Score = 46.0 bits (110), Expect = 6e-07
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
C+ CGKAF +++LA H+ THSG+KP
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 44.5 bits (106), Expect = 2e-06
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+ + +G+KPY C CGK+F +SL H
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRARSSLAIH 31
Score = 33.3 bits (77), Expect = 0.018
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E Y+C+ CGK F ++ + H + H EKP
Sbjct: 1 GSSGS-SGTGEKPYKCNECGKAFRARSSLAIH-QATHS------------------GEKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 33.3 bits (77), Expect = 0.019
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C+ CG F+ S+L H+ H+GE+
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEK 39
Score = 31.4 bits (72), Expect = 0.089
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
T E+ C+ C +F+ + + H+ H+ E+P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQA-THSGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.23
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+ +PY+CN C +F+ L H TH+ E
Sbjct: 6 SGTGEKPYKCNECGKAFRARSSLAIHQATHSGE 38
Score = 29.8 bits (68), Expect = 0.34
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PY+C+ C +F+ H HS +P +
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQAT--HSGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.41
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
T E+P+ C C F+ L H T
Sbjct: 2 SSGS-SGTGEKPYKCNECGKAFRARSSLAIHQAT 34
Score = 29.4 bits (67), Expect = 0.43
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C CG+ F R ++ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIH 31
Score = 28.3 bits (64), Expect = 1.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +CGK + +SSL +H
Sbjct: 10 EKPYKCNECGKAFRARSSLAIH 31
Score = 26.3 bits (59), Expect = 4.8
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C +CG+ F +L IH+ HS E
Sbjct: 15 CNECGKAFRARSSLAIHQA-THSGEKPSGP 43
Score = 25.6 bits (57), Expect = 9.4
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEK 293
Y+C C + + +L H H+GEK
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEK 39
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 59.5 bits (145), Expect = 1e-11
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECS 154
TG+KPF C CGKSF +L H+ IHT + S
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEK-SGPSS 44
Score = 50.2 bits (121), Expect = 1e-08
Identities = 17/71 (23%), Positives = 21/71 (29%), Gaps = 29/71 (40%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHK 113
+ T +K F C CGK F NL H+
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKG-----------------------------NLVTHQ 32
Query: 114 RVHTGEKPFVC 124
R+HTGEK
Sbjct: 33 RIHTGEKSGPS 43
Score = 44.5 bits (106), Expect = 2e-06
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+ + +G KP+ C CGKSF +L H
Sbjct: 1 GSSGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
Score = 44.5 bits (106), Expect = 2e-06
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
C CGK+F + NL H++ H+G+K
Sbjct: 15 CTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 34.4 bits (80), Expect = 0.008
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + + ++C CGK F +K + H +RIH EK
Sbjct: 1 GSSGS-SGTGQKPFECTHCGKSFRAKGNLVTH-QRIHT------------------GEKS 40
Query: 688 FKCN 691
+
Sbjct: 41 GPSS 44
Score = 33.7 bits (78), Expect = 0.014
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P C CG F+ L+ H+ IHTGE+
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 31.4 bits (72), Expect = 0.080
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +P+EC C SF+ H RI H+ + +
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRI--HTGEKSGPSS 44
Score = 31.4 bits (72), Expect = 0.085
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+ +P++C C SF+ G+L H + H E
Sbjct: 6 SGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGE 38
Score = 31.4 bits (72), Expect = 0.089
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T ++ C C SF+ + H+R +HT E+
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQR-IHTGEKSGPS 43
Score = 29.8 bits (68), Expect = 0.31
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TG++ C CG+ F +G + H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
Score = 29.0 bits (66), Expect = 0.61
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T ++P C +C +F+ +L H
Sbjct: 3 SGS-SGTGQKPFECTHCGKSFRAKGNLVTH 31
Score = 28.7 bits (65), Expect = 0.89
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
+ PF C CGK + K +L H
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTH 31
Score = 27.9 bits (63), Expect = 1.6
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
CT CG+ F G L H+R +H+ E +
Sbjct: 15 CTHCGKSFRAKGNLVTHQR-IHTGEKSGPS 43
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 1e-11
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
TGEKP+ C CGKSF+ S L IH+ HT
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHT 36
Score = 50.6 bits (122), Expect = 1e-08
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 29/71 (40%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHK 113
+ T EK + C +CGK F S L +H+
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKS-----------------------------RLRIHQ 32
Query: 114 RVHTGEKPFVC 124
+ HTGE+
Sbjct: 33 KCHTGERHSGP 43
Score = 46.4 bits (111), Expect = 4e-07
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G+KPY C CGKSF + L+ H
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQ 32
Score = 43.7 bits (104), Expect = 3e-06
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
C CGK+F+ ++ L H+K H+G++
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 33.7 bits (78), Expect = 0.014
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERH 854
+P+ C CG F S L H+ HTGERH
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGERH 40
Score = 32.9 bits (76), Expect = 0.028
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E Y+C CGK F K +R H ++ H E+
Sbjct: 1 GSSGS-SGTGEKPYKCSDCGKSFTWKSRLRIH-QKCHT------------------GERH 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 31.4 bits (72), Expect = 0.089
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PY+C C SF + H + H+ R +
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKC--HTGERHSGPS 44
Score = 31.4 bits (72), Expect = 0.089
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T E+ C C SF + ++ H++ HT ER
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQK-CHTGERHSGP 43
Score = 29.8 bits (68), Expect = 0.35
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C CG+ FT + ++ H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 29.4 bits (67), Expect = 0.40
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ +PY+C+ C SF L+ H K H
Sbjct: 6 SGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 29.4 bits (67), Expect = 0.41
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
T E+P+ C C +F L+ H K
Sbjct: 3 SGS-SGTGEKPYKCSDCGKSFTWKSRLRIHQKC 34
Score = 27.9 bits (63), Expect = 1.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C CGK + KS L +H
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIH 31
Score = 27.5 bits (62), Expect = 2.1
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C+DCG+ F L IH++ H+ E
Sbjct: 15 CSDCGKSFTWKSRLRIHQK-CHTGERHSGP 43
Score = 26.3 bits (59), Expect = 5.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEK 293
Y+C C K LR H K HTGE+
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGER 39
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 1e-11
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
TG K F C CGK+F++ S+L +H+ IHT + S
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEK-PSGPSS 45
Score = 51.4 bits (124), Expect = 6e-09
Identities = 19/73 (26%), Positives = 25/73 (34%), Gaps = 29/73 (39%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHK 113
+ T K F C ECGK F S L++H+
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKS-----------------------------TLSMHQ 32
Query: 114 RVHTGEKPFVCES 126
++HTGEKP S
Sbjct: 33 KIHTGEKPSGPSS 45
Score = 44.4 bits (106), Expect = 2e-06
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+ + +G K + C CGK+F + ++L H
Sbjct: 1 GSSGSSGTGGKHFECTECGKAFTRKSTLSMH 31
Score = 43.7 bits (104), Expect = 4e-06
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCE 355
C CGKAF+ ++ L+ H+K H+G+KP
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.011
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+ C CG F + S L H+ IHTGE+
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEK 39
Score = 31.3 bits (72), Expect = 0.083
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 20/62 (32%)
Query: 630 HRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFK 689
+ ++C CGK F K + H ++IH EKP
Sbjct: 3 SGS-SGTGGKHFECTECGKAFTRKSTLSMH-QKIHT------------------GEKPSG 42
Query: 690 CN 691
+
Sbjct: 43 PS 44
Score = 30.6 bits (70), Expect = 0.15
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ + ++C C +F R L H K H
Sbjct: 6 SGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 29.8 bits (68), Expect = 0.32
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TG + C CG+ FT++ + H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMH 31
Score = 29.4 bits (67), Expect = 0.37
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + + +EC C +F H +I H+ +P +
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKI--HTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.41
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T + C C +F + + H++ +HT E+P
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQK-IHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.46
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
F C +CGK + +KS+L MH
Sbjct: 10 GKHFECTECGKAFTRKSTLSMH 31
Score = 28.6 bits (65), Expect = 0.72
Identities = 7/33 (21%), Positives = 9/33 (27%), Gaps = 1/33 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
T + C C F + L H K
Sbjct: 3 SGS-SGTGGKHFECTECGKAFTRKSTLSMHQKI 34
Score = 27.1 bits (61), Expect = 2.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQ 299
++C C RK TL H K+HTGEK
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
Score = 26.3 bits (59), Expect = 5.3
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
CT+CG+ F L +H++ +H+ E
Sbjct: 15 CTECGKAFTRKSTLSMHQK-IHTGEKPSGP 43
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 59.1 bits (144), Expect = 1e-11
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECS 154
TG KP+ C C K+FS S L +H+ HT + S
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVK-PSGPS 44
Score = 52.1 bits (126), Expect = 4e-09
Identities = 18/75 (24%), Positives = 22/75 (29%), Gaps = 30/75 (40%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHK 113
+ T K + C +C K F S L VH+
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKS-----------------------------QLIVHQ 32
Query: 114 RVHTGEKPFVCESCG 128
R HTG KP S G
Sbjct: 33 RSHTGVKPSGP-SSG 46
Score = 46.0 bits (110), Expect = 5e-07
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C C K FS ++ L H+++H+G KP +
Sbjct: 15 CSQCAKTFSLKSQLIVHQRSHTGVKPSGPSS 45
Score = 44.8 bits (107), Expect = 1e-06
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+ + +G KPY C C K+F+ + L H
Sbjct: 1 GSSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 34.4 bits (80), Expect = 0.007
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C C F S L+ H+ HTG +
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVK 39
Score = 30.6 bits (70), Expect = 0.14
Identities = 12/64 (18%), Positives = 16/64 (25%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + Y C C K F K + H +R H KP
Sbjct: 1 GSSGS-SGTGVKPYGCSQCAKTFSLKSQLIVH-QRSHT------------------GVKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 30.6 bits (70), Expect = 0.17
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + ++PY C C +F + H R H+ +P +
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRS--HTGVKPSGPS 44
Score = 30.2 bits (69), Expect = 0.21
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
T +P+ C C+ TF L H ++
Sbjct: 2 SSGS-SGTGVKPYGCSQCAKTFSLKSQLIVHQRS 34
Score = 29.8 bits (68), Expect = 0.33
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ +PY C+ C +F L H ++H
Sbjct: 6 SGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 29.0 bits (66), Expect = 0.51
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T + C C +F +++ H+R HT +P
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQR-SHTGVKPSGP 43
Score = 29.0 bits (66), Expect = 0.54
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TG + + C C + F+ + + H
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 28.3 bits (64), Expect = 1.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
P+ C QC K ++ KS L +H
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVH 31
Score = 27.5 bits (62), Expect = 2.3
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C+ C + F L +H+R H+
Sbjct: 15 CSQCAKTFSLKSQLIVHQR-SHTGVKPSGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 1e-11
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECS 154
+GEKPF CE CGK F+Q+S L H+ +HT + S
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEK-PSGPS 44
Score = 49.5 bits (119), Expect = 3e-08
Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 29/72 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
+ EK F CEECGK+F +S +L H+R
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNS-----------------------------HLHSHQR 33
Query: 115 VHTGEKPFVCES 126
VHTGEKP S
Sbjct: 34 VHTGEKPSGPSS 45
Score = 46.0 bits (110), Expect = 5e-07
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + SG+KP+ CE CGK F QN+ L H
Sbjct: 1 GSSGSSGSGEKPFQCEECGKRFTQNSHLHSHQ 32
Score = 43.3 bits (103), Expect = 6e-06
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C+ CGK F+ ++L +H++ H+G+KP +
Sbjct: 15 CEECGKRFTQNSHLHSHQRVHTGEKPSGPSS 45
Score = 34.8 bits (81), Expect = 0.006
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P C+ CG RF ++S L H+ +HTGE+
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 34.1 bits (79), Expect = 0.010
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G S E +QC+ CGK F ++ H +R+H EKP
Sbjct: 1 GSSGS-SGSGEKPFQCEECGKRFTQNSHLHSH-QRVHTG------------------EKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 32.1 bits (74), Expect = 0.043
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
S +P+QC C F + HL H + H E
Sbjct: 6 SGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGE 38
Score = 31.7 bits (73), Expect = 0.061
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRH 458
+ E+P C+ C F ++ HL H
Sbjct: 2 SSGS-SGSGEKPFQCEECGKRFTQNSHLHSH 31
Score = 31.0 bits (71), Expect = 0.11
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + S +P++C+ C F N H R+ H+ +P +
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRV--HTGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.11
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ E+ C+ C F ++ + H+R VHT E+P
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQR-VHTGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.13
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
+GE+ C CG+ FTQ + H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
Score = 27.9 bits (63), Expect = 1.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E PF C +CGK + + S L+ H
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSH 31
Score = 26.0 bits (58), Expect = 6.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEK 293
+QC C + L H ++HTGEK
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 26.0 bits (58), Expect = 6.9
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C +CG+ F N L H+R VH+ E
Sbjct: 15 CEECGKRFTQNSHLHSHQR-VHTGEKPSGP 43
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.0 bits (144), Expect = 1e-11
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECS 154
+GEKPF C+ CGK+F Q+ L H IHT + S
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEK-PSGPS 44
Score = 51.0 bits (123), Expect = 1e-08
Identities = 19/72 (26%), Positives = 24/72 (33%), Gaps = 29/72 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
+ EK F C+ECGK F + +L H R
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNI-----------------------------HLASHLR 33
Query: 115 VHTGEKPFVCES 126
+HTGEKP S
Sbjct: 34 IHTGEKPSGPSS 45
Score = 46.0 bits (110), Expect = 5e-07
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + SG+KP+ C+ CGK+F QN L H
Sbjct: 1 GSSGSSGSGEKPFKCKECGKAFRQNIHLASHL 32
Score = 44.8 bits (107), Expect = 1e-06
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C CGKAF +LA+H + H+G+KP +
Sbjct: 15 CKECGKAFRQNIHLASHLRIHTGEKPSGPSS 45
Score = 34.0 bits (79), Expect = 0.009
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P C CG F+++ L H IHTGE+
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEK 39
Score = 32.1 bits (74), Expect = 0.048
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRH 458
+ E+P C+ C F+++ HL H
Sbjct: 2 SSGS-SGSGEKPFKCKECGKAFRQNIHLASH 31
Score = 32.1 bits (74), Expect = 0.054
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
S +P++C C +F++ HL H + H
Sbjct: 6 SGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 31.3 bits (72), Expect = 0.095
Identities = 14/62 (22%), Positives = 19/62 (30%), Gaps = 20/62 (32%)
Query: 630 HRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFK 689
S E ++C CGK F ++ H RIH EKP
Sbjct: 3 SGS-SGSGEKPFKCKECGKAFRQNIHLASH-LRIHT------------------GEKPSG 42
Query: 690 CN 691
+
Sbjct: 43 PS 44
Score = 30.9 bits (71), Expect = 0.11
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + S +P++C C +F+ N H RI H+ +P +
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRI--HTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.22
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ + E+ C C +F+ + + H R +HT E+P
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLR-IHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.80
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
+GE+ C CG+ F Q + H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASH 31
Score = 27.1 bits (61), Expect = 2.6
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E PF C +CGK + + L H
Sbjct: 10 EKPFKCKECGKAFRQNIHLASH 31
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 1e-11
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
TGEKPF C+ CG +FS SLF H H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHE 36
Score = 49.1 bits (118), Expect = 4e-08
Identities = 12/35 (34%), Positives = 13/35 (37%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCES 126
K C CG FS +L H R H P S
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
Score = 47.2 bits (113), Expect = 2e-07
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDT 373
+ + +G+KP+ C+ CG +F+ + SL H +
Sbjct: 1 GSSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS 34
Score = 44.1 bits (105), Expect = 3e-06
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C CG FS +L H ++H P +
Sbjct: 15 CKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
Score = 35.6 bits (83), Expect = 0.003
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P C CG F S +L +H H P G
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPSSG 46
Score = 32.6 bits (75), Expect = 0.029
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQC 210
S + + +P++C C +F + KH R H T P
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS--HERTDPSGP 43
Score = 32.2 bits (74), Expect = 0.048
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 202 HSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+ +P+QC C +F L +H ++H
Sbjct: 7 GTGEKPFQCKECGMNFSWSCSLFKHLRSHERT 38
Score = 31.4 bits (72), Expect = 0.092
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
T E+P C+ C F S L +H ++
Sbjct: 3 SGS-SGTGEKPFQCKECGMNFSWSCSLFKHLRS 34
Score = 31.0 bits (71), Expect = 0.12
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLST 790
E PF C +CG ++ SL+ HL +
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRS 34
Score = 31.0 bits (71), Expect = 0.13
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T E+ C C +F + KH R H P
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLR-SHERTDPSGP 43
Score = 30.6 bits (70), Expect = 0.14
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKHVST 875
TGE+ C CG F+ ++ KH+ +
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS 34
Score = 28.7 bits (65), Expect = 0.88
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
G + E +QC CG F + +H R H
Sbjct: 1 GSSGS-SGTGEKPFQCKECGMNFSWSCSLFKH-LRSH 35
Score = 25.6 bits (57), Expect = 9.8
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEK 293
+QC C + +L HL+ H
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTD 39
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 58.7 bits (143), Expect = 2e-11
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
+GEKPF CE CGK F +S + H+ H+
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHS 36
Score = 53.7 bits (130), Expect = 1e-09
Identities = 21/75 (28%), Positives = 26/75 (34%), Gaps = 30/75 (40%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHK 113
+ + EK F CEECGK F T+S H+
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNS-----------------------------QCYSHQ 32
Query: 114 RVHTGEKPFVCESCG 128
R H+GEKP S G
Sbjct: 33 RSHSGEKPSGP-SSG 46
Score = 47.2 bits (113), Expect = 2e-07
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+ + SG+KP+ CE CGK F N+ H
Sbjct: 1 GSSGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
Score = 46.4 bits (111), Expect = 4e-07
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCG 358
C+ CGK F + +H+++HSG+KP G
Sbjct: 15 CEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 36.4 bits (85), Expect = 0.002
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+P C+ CG F +S H+ H+GE+ P G
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG 46
Score = 31.8 bits (73), Expect = 0.063
Identities = 15/67 (22%), Positives = 21/67 (31%), Gaps = 21/67 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G S E ++C+ CGK F + H +R H EKP
Sbjct: 1 GSSGS-SGSGEKPFKCEECGKGFYTNSQCYSH-QRSHS------------------GEKP 40
Query: 688 FKCNLCG 694
+ G
Sbjct: 41 SGPS-SG 46
Score = 31.0 bits (71), Expect = 0.11
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + S +P++C+ C F TN + H R HS +P +
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRS--HSGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.12
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
S +P++C C F H ++H+ E
Sbjct: 6 SGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGE 38
Score = 30.2 bits (69), Expect = 0.19
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQ 443
+ + E+ C+ C F T+++ H+R H+ E+P
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQR-SHSGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.25
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
+GE+ C CG+GF H
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
Score = 29.1 bits (66), Expect = 0.53
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
+ E+P C+ C F + H ++
Sbjct: 3 SGS-SGSGEKPFKCEECGKGFYTNSQCYSHQRS 34
Score = 29.1 bits (66), Expect = 0.62
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCG 647
C +CG+ FY N H+R HS E G
Sbjct: 15 CEECGKGFYTNSQCYSHQR-SHSGEKPSGPS-SG 46
Score = 28.3 bits (64), Expect = 1.2
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E PF C +CGK + S Y H
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSH 31
Score = 27.5 bits (62), Expect = 2.2
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCG 301
++C C H + H+GEK G
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 26.4 bits (59), Expect = 6.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 685 EKPFKCNLCGTGFESDRQVSGH 706
EKPFKC CG GF ++ Q H
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSH 31
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 58.7 bits (143), Expect = 2e-11
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
GEKP+ CE CG F +L H IHT
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHT 35
Score = 51.0 bits (123), Expect = 7e-09
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 341 AHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+ G+KPY CE CG F +LK H
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSH 30
Score = 47.9 bits (115), Expect = 1e-07
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPF 122
K + C++CG F L H R+HTG P
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 41.7 bits (99), Expect = 2e-05
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPY 352
C++CG F L +H + H+G P
Sbjct: 14 CEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 37.9 bits (89), Expect = 4e-04
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C++CG RF+ L H IHTG
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSG 38
Score = 34.0 bits (79), Expect = 0.008
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 434 HTDERPHACQYCSATFKKSDHLKRHSKT 461
E+P+ C+ C F+ LK H +
Sbjct: 6 SGGEKPYPCEICGTRFRHLQTLKSHLRI 33
Score = 34.0 bits (79), Expect = 0.009
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 202 HSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+PY C +C F+ LK H + H
Sbjct: 6 SGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 33.6 bits (78), Expect = 0.012
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKHV 873
GE+ + C +CG F +K H+
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHL 31
Score = 31.7 bits (73), Expect = 0.060
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHA 441
E+ C+IC F+ +K H R +HT P +
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLR-IHTGSGPSS 41
Score = 29.8 bits (68), Expect = 0.25
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPY 208
+ +PY C+IC F+ K H RI H+ + P
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI--HTGSGPS 40
Score = 29.8 bits (68), Expect = 0.32
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 633 AVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
E Y C+ CG F + ++ H+ RIH
Sbjct: 4 GSSGGEKPYPCEICGTRFRHLQTLKSHL-RIH 34
Score = 27.8 bits (63), Expect = 1.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEK 293
Y C +C + TL+ HL++HTG
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSG 38
Score = 27.1 bits (61), Expect = 2.6
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 51 SLKNHVRIHTKEK 63
+LK+H+RIHT
Sbjct: 26 TLKSHLRIHTGSG 38
Score = 26.7 bits (60), Expect = 4.0
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHL 788
E P+ C CG + +L HL
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHL 31
Score = 25.9 bits (58), Expect = 7.0
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 685 EKPFKCNLCGTGF 697
EKP+ C +CGT F
Sbjct: 9 EKPYPCEICGTRF 21
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 2e-11
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECS 154
+GE+PF C CGK F + S L H +H+ R+ S
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHS-REKSSGPS 44
Score = 49.8 bits (120), Expect = 2e-08
Identities = 16/72 (22%), Positives = 21/72 (29%), Gaps = 29/72 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
+ E+ F C ECGK F S +L H R
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRS-----------------------------HLAGHLR 33
Query: 115 VHTGEKPFVCES 126
+H+ EK S
Sbjct: 34 LHSREKSSGPSS 45
Score = 44.8 bits (107), Expect = 1e-06
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + SG++P+ C CGK F + + L H
Sbjct: 1 GSSGSSGSGERPFKCNECGKGFGRRSHLAGHL 32
Score = 42.9 bits (102), Expect = 7e-06
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C+ CGK F +++LA H + HS +K +
Sbjct: 15 CNECGKGFGRRSHLAGHLRLHSREKSSGPSS 45
Score = 35.6 bits (83), Expect = 0.003
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
RP C+ CG F + S L H +H+ E+
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 32.9 bits (76), Expect = 0.022
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
S RP++CN C F R HL H + H+ E
Sbjct: 6 SGSGERPFKCNECGKGFGRRSHLAGHLRLHSRE 38
Score = 32.5 bits (75), Expect = 0.031
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + S RP++C+ C F H R+ HS + +
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRL--HSREKSSGPS 44
Score = 32.5 bits (75), Expect = 0.037
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G S E ++C+ CGK F + ++ H R+H EK
Sbjct: 1 GSSGS-SGSGERPFKCNECGKGFGRRSHLAGH-LRLHS------------------REKS 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 30.2 bits (69), Expect = 0.23
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 433 VHTDERPHACQYCSATFKKSDHLKRH 458
+ ERP C C F + HL H
Sbjct: 6 SGSGERPFKCNECGKGFGRRSHLAGH 31
Score = 29.4 bits (67), Expect = 0.42
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
+GER C CG+GF +R + H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGH 31
Score = 28.3 bits (64), Expect = 1.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E PF C +CGK + ++S L H
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGH 31
Score = 26.7 bits (60), Expect = 4.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 685 EKPFKCNLCGTGFESDRQVSGH 706
E+PFKCN CG GF ++GH
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGH 31
Score = 26.3 bits (59), Expect = 5.0
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C +CG+ F L H R +HS+E +
Sbjct: 15 CNECGKGFGRRSHLAGHLR-LHSREKSSGP 43
Score = 26.0 bits (58), Expect = 7.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEK 293
++C C R+ L HL+LH+ EK
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREK 39
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 2e-11
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
TGEKP+ C CGK F+Q+S L H+ IHT
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHT 36
Score = 51.0 bits (123), Expect = 9e-09
Identities = 19/72 (26%), Positives = 25/72 (34%), Gaps = 29/72 (40%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
T EK + C ECGK VF+ ++L H+R
Sbjct: 3 SGSSGTGEKPYKCNECGK-----------------------------VFTQNSHLANHQR 33
Query: 115 VHTGEKPFVCES 126
+HTG KP S
Sbjct: 34 IHTGVKPSGPSS 45
Score = 45.2 bits (108), Expect = 1e-06
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C+ CGK F+ ++LA H++ H+G KP +
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKPSGPSS 45
Score = 44.0 bits (105), Expect = 3e-06
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 341 AHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G+KPY C CGK F QN+ L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQ 32
Score = 34.4 bits (80), Expect = 0.007
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C+ CG F ++S L H+ IHTG +
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 34.4 bits (80), Expect = 0.007
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E Y+C+ CGKVF ++ H +RIH KP
Sbjct: 1 GSSGS-SGTGEKPYKCNECGKVFTQNSHLANH-QRIHT------------------GVKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 31.7 bits (73), Expect = 0.065
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRH 458
T E+P+ C C F ++ HL H
Sbjct: 2 SSGS-SGTGEKPYKCNECGKVFTQNSHLANH 31
Score = 31.7 bits (73), Expect = 0.065
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T E+ C+ C F ++ + H+R +HT +P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQR-IHTGVKPSGP 43
Score = 31.7 bits (73), Expect = 0.070
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+ +PY+CN C F + HL H + H
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLANHQRIHTGV 38
Score = 31.7 bits (73), Expect = 0.073
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PY+C+ C F N H RI H+ +P +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRI--HTGVKPSGPS 44
Score = 29.0 bits (66), Expect = 0.68
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C CG+ FTQ + H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANH 31
Score = 27.5 bits (62), Expect = 2.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +CGK++ + S L H
Sbjct: 10 EKPYKCNECGKVFTQNSHLANH 31
Score = 25.6 bits (57), Expect = 9.2
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C +CG++F N L H+R +H+
Sbjct: 15 CNECGKVFTQNSHLANHQR-IHTGVKPSGP 43
Score = 25.6 bits (57), Expect = 9.5
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 685 EKPFKCNLCGTGF 697
EKP+KCN CG F
Sbjct: 10 EKPYKCNECGKVF 22
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 58.0 bits (141), Expect = 3e-11
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
+GEK C+ CGK+F S+L IH+ +H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHM 36
Score = 51.4 bits (124), Expect = 7e-09
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 85 KAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCES 126
+ K H+CD CGK F + L +H+RVH GEK S
Sbjct: 4 GSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSS 45
Score = 46.4 bits (111), Expect = 3e-07
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+ + SG+K + C+ CGK+F ++L+ H
Sbjct: 1 GSSGSSGSGEKSHTCDECGKNFCYISALRIH 31
Score = 40.3 bits (95), Expect = 6e-05
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+ H CD CG F SAL H+ +H GE+ P G
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG 46
Score = 38.7 bits (91), Expect = 2e-04
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
CD CGK F + L H++ H G+K +
Sbjct: 15 CDECGKNFCYISALRIHQRVHMGEKCSGPSS 45
Score = 32.6 bits (75), Expect = 0.028
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
G S E ++ CD CGK F +R H +R+H
Sbjct: 1 GSSGS-SGSGEKSHTCDECGKNFCYISALRIH-QRVH 35
Score = 31.4 bits (72), Expect = 0.084
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
+GE+ H C CG+ F A++ H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH 31
Score = 30.3 bits (69), Expect = 0.23
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ E++ CD C +F + ++ H+R VH E+
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQR-VHMGEKCSGP 43
Score = 29.9 bits (68), Expect = 0.28
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
S + + C+ C +F L+ H + H
Sbjct: 6 SGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 29.1 bits (66), Expect = 0.51
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 433 VHTDERPHACQYCSATFKKSDHLKRH 458
+ E+ H C C F L+ H
Sbjct: 6 SGSGEKSHTCDECGKNFCYISALRIH 31
Score = 28.3 bits (64), Expect = 0.95
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSETRPYQCN 211
S + S + + CD C +F + H+ VH + +
Sbjct: 2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQ-RVHMGEKCSGPS 44
Score = 27.9 bits (63), Expect = 1.2
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 760 GKINGDEPPFACPQCGKLYNKKSSLYMH 787
G E C +CGK + S+L +H
Sbjct: 4 GSSGSGEKSHTCDECGKNFCYISALRIH 31
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 57.9 bits (141), Expect = 4e-11
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
GEKP+ CE+CG F Q + L H +IHT
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHT 35
Score = 49.1 bits (118), Expect = 5e-08
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 342 HKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ G+KPY CETCG F Q A L+ H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHV 31
Score = 47.5 bits (114), Expect = 1e-07
Identities = 14/68 (20%), Positives = 19/68 (27%), Gaps = 29/68 (42%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
EK + CE CG +FV + +L H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVA-----------------------------HLRAHVL 32
Query: 115 VHTGEKPF 122
+HTG P
Sbjct: 33 IHTGSGPS 40
Score = 41.4 bits (98), Expect = 2e-05
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPY 352
C+ CG F +L AH H+G P
Sbjct: 14 CETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 35.6 bits (83), Expect = 0.003
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C+ CGARF + + L H IHTG
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSG 38
Score = 35.2 bits (82), Expect = 0.003
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+PY+C C A F + HL+ H H
Sbjct: 5 SSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 32.9 bits (76), Expect = 0.021
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 433 VHTDERPHACQYCSATFKKSDHLKRHSKT 461
E+P+ C+ C A F + HL+ H
Sbjct: 5 SSGGEKPYKCETCGARFVQVAHLRAHVLI 33
Score = 32.5 bits (75), Expect = 0.033
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKHVST 875
GE+ + C CG F Q ++ HV
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI 33
Score = 30.2 bits (69), Expect = 0.20
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHA 441
E+ C+ C F ++ H +HT P +
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVL-IHTGSGPSS 41
Score = 29.0 bits (66), Expect = 0.62
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 634 VHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
E Y+C+ CG F ++R H IH
Sbjct: 5 SSGGEKPYKCETCGARFVQVAHLRAH-VLIH 34
Score = 28.3 bits (64), Expect = 1.1
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 169 HLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPY 208
+ +PY+C+ C A F + H I H+ + P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI--HTGSGPS 40
Score = 25.6 bits (57), Expect = 9.3
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEK 293
Y+C C + LR H+ +HTG
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSG 38
Score = 25.6 bits (57), Expect = 9.9
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 685 EKPFKCNLCGTGF 697
EKP+KC CG F
Sbjct: 9 EKPYKCETCGARF 21
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 4e-11
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
+GEKP+ C CGK + + L H+ +HT
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHT 36
Score = 51.4 bits (124), Expect = 6e-09
Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 29/73 (39%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHK 113
+ + EK + C ECGK + +L H+
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRL-----------------------------DLDFHQ 32
Query: 114 RVHTGEKPFVCES 126
RVHTGEK S
Sbjct: 33 RVHTGEKLSGPSS 45
Score = 44.4 bits (106), Expect = 2e-06
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 341 AHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + SG+KPY C CGK + + L +H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQ 32
Score = 43.3 bits (103), Expect = 5e-06
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
C CGK + + +L H++ H+G+K
Sbjct: 15 CVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 34.4 bits (80), Expect = 0.008
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C CG +K+ L H+ +HTGE+
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 31.7 bits (73), Expect = 0.059
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
S +PY+C C +KR L H + H
Sbjct: 6 SGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 31.3 bits (72), Expect = 0.077
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G S E Y+C CGK + + + H +R+H EK
Sbjct: 1 GSSGS-SGSGEKPYKCVECGKGYKRRLDLDFH-QRVHT------------------GEKL 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 31.0 bits (71), Expect = 0.12
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + S +PY+C C +K + H R+ H+ + +
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRV--HTGEKLSGPS 44
Score = 31.0 bits (71), Expect = 0.13
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRH 458
+ E+P+ C C +K+ L H
Sbjct: 2 SSGS-SGSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 30.6 bits (70), Expect = 0.14
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
+GE+ + C CG+G+ +R + H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 30.6 bits (70), Expect = 0.16
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ + E+ C C +K ++ H+R VHT E+
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQR-VHTGEKLSGP 43
Score = 27.9 bits (63), Expect = 1.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +CGK Y ++ L H
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFH 31
Score = 27.1 bits (61), Expect = 3.2
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCD 644
C +CG+ + L H+R VH+ E
Sbjct: 15 CVECGKGYKRRLDLDFHQR-VHTGEKLSGPS 44
Score = 26.3 bits (59), Expect = 4.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEK 293
Y+C C KR+ L H ++HTGEK
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEK 39
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 5e-11
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECS 154
TGEKP+ C+ C K+F+Q + L H+ HT + S
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEK-PSGPS 44
Score = 49.5 bits (119), Expect = 3e-08
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 86 AVHLKI----KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCE 125
K + C VC K F+ +L H++ HTGEKP
Sbjct: 1 GSSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 46.0 bits (110), Expect = 5e-07
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCE 355
C +C KAF+ + +LA H+KTH+G+KP
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 1e-06
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+ + +G+KPY C+ C K+F Q A L H
Sbjct: 1 GSSGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
Score = 33.3 bits (77), Expect = 0.016
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C +C F + + L QH+ HTGE+
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 32.5 bits (75), Expect = 0.030
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
T E+P+ C+ CS F + HL +H KT
Sbjct: 2 SSGS-SGTGEKPYECKVCSKAFTQKAHLAQHQKT 34
Score = 32.5 bits (75), Expect = 0.039
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+ +PY+C +C+ +F + HL QH KTH E
Sbjct: 6 SGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGE 38
Score = 32.1 bits (74), Expect = 0.050
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + E Y+C C K F K ++ +H ++ H EKP
Sbjct: 1 GSSGS-SGTGEKPYECKVCSKAFTQKAHLAQH-QKTHT------------------GEKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 29.8 bits (68), Expect = 0.27
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +PYEC +C+ +F +H + H+ +P +
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKT--HTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.29
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T E+ C +C+ +F + +H++ HT E+P
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQK-THTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.33
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ + C VC + FTQ+ + +H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
Score = 27.5 bits (62), Expect = 2.2
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C C K + +K+ L H
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQH 31
Score = 26.3 bits (59), Expect = 6.1
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C C + F L H++ H+ E
Sbjct: 15 CKVCSKAFTQKAHLAQHQK-THTGEKPSGP 43
Score = 26.0 bits (58), Expect = 7.8
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCE 298
Y+C +C +K L H K HTGEK
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 57.2 bits (139), Expect = 5e-11
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
GEK + C C FSQ SSL +H+ +H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHV 36
Score = 48.7 bits (117), Expect = 6e-08
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCES 126
K C C FS ++L +H+ VH GEKP S
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS 45
Score = 45.2 bits (108), Expect = 9e-07
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+ + G+K + C C F+Q +SL+ H
Sbjct: 1 GSSGSSGMGEKTWKCRECDMCFSQASSLRLH 31
Score = 42.9 bits (102), Expect = 7e-06
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
C C FS ++L H+ H G+KP
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 33.7 bits (78), Expect = 0.012
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+ C C F ++S+L H+ +H GE+
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEK 39
Score = 32.5 bits (75), Expect = 0.031
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G E T++C C F +R H + +H+ EKP
Sbjct: 1 GSSGS-SGMGEKTWKCRECDMCFSQASSLRLH-QNVHV------------------GEKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 31.4 bits (72), Expect = 0.092
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + ++C C+ F + H + H +P +
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNV--HVGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.16
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ ++C C+ F + L+ H H
Sbjct: 6 SGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 29.4 bits (67), Expect = 0.44
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
GE+ C C F+Q +++ H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLH 31
Score = 28.3 bits (64), Expect = 1.1
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ E+ C C+ F + ++ H+ VH E+P
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQN-VHVGEKPSGP 43
Score = 27.9 bits (63), Expect = 1.7
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E + C +C +++ SSL +H
Sbjct: 10 EKTWKCRECDMCFSQASSLRLH 31
Score = 27.9 bits (63), Expect = 1.7
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 433 VHTDERPHACQYCSATFKKSDHLKRHSKT 461
E+ C+ C F ++ L+ H
Sbjct: 6 SGMGEKTWKCRECDMCFSQASSLRLHQNV 34
Score = 27.5 bits (62), Expect = 1.9
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C +C F +L +H+ VH E
Sbjct: 15 CRECDMCFSQASSLRLHQN-VHVGEKPSGP 43
Score = 27.1 bits (61), Expect = 2.5
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQ 299
++C C + + +LR H +H GEK
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS 45
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 57.2 bits (139), Expect = 6e-11
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIH-KMIHTQRQYRYECS 154
TG+KP+ C CGK+F Q++SL H + HT + S
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEK-PSGPS 45
Score = 50.3 bits (121), Expect = 2e-08
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVH 375
+ + +G KPY C CGK+F QN SL H H
Sbjct: 1 GSSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 47.6 bits (114), Expect = 1e-07
Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 28/73 (38%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHK 113
+ T +K + C ECGK F+ +++L RH +
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRH----------------------------WR 33
Query: 114 RVHTGEKPFVCES 126
HTGEKP S
Sbjct: 34 YYHTGEKPSGPSS 46
Score = 37.9 bits (89), Expect = 4e-04
Identities = 16/71 (22%), Positives = 22/71 (30%), Gaps = 30/71 (42%)
Query: 285 HLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAAH-K 343
TG+K C + CGKAF T+L H +
Sbjct: 3 SGSSGTGKKPYECIE-----------------------------CGKAFIQNTSLIRHWR 33
Query: 344 KTHSGDKPYVC 354
H+G+KP
Sbjct: 34 YYHTGEKPSGP 44
Score = 35.6 bits (83), Expect = 0.002
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSETRPYQCN 211
S + + +PYEC C +F N +H Y H+ +P +
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 35.6 bits (83), Expect = 0.003
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 825 RPHMCDLCGARFKKSSALLQH-RPIHTGER 853
+P+ C CG F ++++L++H R HTGE+
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEK 40
Score = 35.6 bits (83), Expect = 0.003
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T ++ C C +F + + +H R+ HT E+P
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 32.9 bits (76), Expect = 0.023
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 429 HKRFVHTDERPHACQYCSATFKKSDHLKRHSKTAH 463
T ++P+ C C F ++ L RH + H
Sbjct: 3 SGS-SGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 32.5 bits (75), Expect = 0.029
Identities = 12/64 (18%), Positives = 18/64 (28%), Gaps = 19/64 (29%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + + Y+C CGK F + H + H EKP
Sbjct: 1 GSSGS-SGTGKKPYECIECGKAFIQNTSLIRHWRYYHT------------------GEKP 41
Query: 688 FKCN 691
+
Sbjct: 42 SGPS 45
Score = 30.6 bits (70), Expect = 0.16
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKHVSTLH 877
TG++ + C CG+ F Q ++ +H H
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 30.6 bits (70), Expect = 0.19
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C +CG+ F N +L H R H+ E
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 27.5 bits (62), Expect = 1.8
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQH 226
+ +PY+C C +F + L +H
Sbjct: 6 SGTGKKPYECIECGKAFIQNTSLIRH 31
Score = 27.5 bits (62), Expect = 2.2
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKH 792
+ P+ C +CGK + + +SL H H
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYH 36
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 7e-11
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECS 154
TGEKP C CGK+F S L +H+ H + S
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDK-HSGPS 44
Score = 49.5 bits (119), Expect = 3e-08
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCES 126
K C CGK F + L +H+R H +K S
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSS 45
Score = 44.1 bits (105), Expect = 3e-06
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
C CGKAF ++ L H++TH DK
Sbjct: 15 CTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 43.3 bits (103), Expect = 6e-06
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 341 AHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+ + +G+KP C CGK+F + L H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
Score = 34.8 bits (81), Expect = 0.004
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERH 854
+P C CG F S L+ H+ H ++H
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTHVDDKH 40
Score = 31.0 bits (71), Expect = 0.12
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + +P +C C +F + H R H + + +
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRT--HVDDKHSGPS 44
Score = 31.0 bits (71), Expect = 0.13
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + + E +C CGK F K + H +R H+ +K
Sbjct: 1 GSSGSS-GTGEKPCKCTECGKAFCWKSQLIMH-QRTHV------------------DDKH 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 30.6 bits (70), Expect = 0.14
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T E+ C C C +F +++ H+R H D++
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQR-THVDDKHSGP 43
Score = 29.4 bits (67), Expect = 0.36
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 202 HSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ +P +C C +F L H +TH
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 29.1 bits (66), Expect = 0.56
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P C +CGK + KS L MH
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMH 31
Score = 28.3 bits (64), Expect = 0.94
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE+ C CG+ F + + H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
Score = 28.3 bits (64), Expect = 1.1
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 434 HTDERPHACQYCSATFKKSDHLKRHSKT 461
T E+P C C F L H +T
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQLIMHQRT 34
Score = 26.8 bits (60), Expect = 3.4
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
CT+CG+ F L +H+R H +
Sbjct: 15 CTECGKAFCWKSQLIMHQR-THVDDKHSGP 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 56.4 bits (137), Expect = 1e-10
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
+ K C CG+ F+ S L H+ IHT
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHT 36
Score = 51.0 bits (123), Expect = 9e-09
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCES 126
K H C CG+ F+ ++L H+R+HTGEKP S
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSS 45
Score = 45.6 bits (109), Expect = 8e-07
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + S K + C CG+ F + L H
Sbjct: 1 GSSGSSGSSTKSHQCHECGRGFTLKSHLNQHQ 32
Score = 42.9 bits (102), Expect = 7e-06
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C CG+ F+ +++L H++ H+G+KP +
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKPSGPSS 45
Score = 36.4 bits (85), Expect = 0.001
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+ H C CG F S L QH+ IHTGE+
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEK 39
Score = 33.3 bits (77), Expect = 0.015
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
+ + H C CGRGFT + + +H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
Score = 32.1 bits (74), Expect = 0.039
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 202 HSETRPYQCNLCNASFKRPGHLKQHGKTH 230
S T+ +QC+ C F HL QH + H
Sbjct: 7 GSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 30.2 bits (69), Expect = 0.24
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 631 RRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
+ S ++QC CG+ F K ++ +H +RIH
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQH-QRIH 35
Score = 29.8 bits (68), Expect = 0.30
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ ++ C C F + + +H+R +HT E+P
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQR-IHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.35
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 434 HTDERPHACQYCSATFKKSDHLKRH 458
+ + H C C F HL +H
Sbjct: 7 GSSTKSHQCHECGRGFTLKSHLNQH 31
Score = 27.9 bits (63), Expect = 1.6
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
C +CG+ + KS L H
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQH 31
Score = 27.5 bits (62), Expect = 2.0
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQC 210
S + S + ++C C F +H RI H+ +P
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRI--HTGEKPSGP 43
Score = 26.7 bits (60), Expect = 3.9
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 685 EKPFKCNLCGTGF 697
K +C+ CG GF
Sbjct: 10 TKSHQCHECGRGF 22
Score = 26.4 bits (59), Expect = 5.7
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 599 HGQTTSGTRRFQLCACTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
G + S T+ Q C +CGR F L H+R +H+ E
Sbjct: 3 SGSSGSSTKSHQ---CHECGRGFTLKSHLNQHQR-IHTGEKPSGP 43
Score = 26.4 bits (59), Expect = 6.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEK 293
+QC C K L H ++HTGEK
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEK 39
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 56.0 bits (136), Expect = 2e-10
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECS 154
G P+ C C KSFS L +H+ +HT R+ S
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHT-REKPSGPS 44
Score = 49.5 bits (119), Expect = 3e-08
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCES 126
+ C C K FS L VH+R+HT EKP S
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS 45
Score = 44.1 bits (105), Expect = 2e-06
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G PY C C KSF+ L H
Sbjct: 1 GSSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQ 32
Score = 42.9 bits (102), Expect = 8e-06
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
C C K+FS + L H++ H+ +KP
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 33.3 bits (77), Expect = 0.019
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
P+ C C F LL H+ +HT E+
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVHQRMHTREK 39
Score = 32.9 bits (76), Expect = 0.023
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + + + PY+C C SF H R+ H+ +P +
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRM--HTREKPSGPS 44
Score = 31.7 bits (73), Expect = 0.065
Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G + N Y+C C K F K + H +R+H EKP
Sbjct: 1 GSSGS-SGAGVNPYKCSQCEKSFSGKLRLLVH-QRMHT------------------REKP 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 29.8 bits (68), Expect = 0.29
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 202 HSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ PY+C+ C SF L H + H
Sbjct: 7 GAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 29.0 bits (66), Expect = 0.66
Identities = 5/29 (17%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
G + C C + F+ + + H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
Score = 28.7 bits (65), Expect = 0.86
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
P+ C QC K ++ K L +H
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVH 31
Score = 27.1 bits (61), Expect = 2.7
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ C C SF + H+R +HT E+P
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQR-MHTREKPSGP 43
Score = 26.7 bits (60), Expect = 3.5
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 434 HTDERPHACQYCSATFKKSDHLKRH 458
P+ C C +F L H
Sbjct: 7 GAGVNPYKCSQCEKSFSGKLRLLVH 31
Score = 26.3 bits (59), Expect = 5.2
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQ 299
Y+C C+ K L H ++HT EK
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS 45
Score = 26.3 bits (59), Expect = 5.3
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C+ C + F L +H+R +H++E
Sbjct: 15 CSQCEKSFSGKLRLLVHQR-MHTREKPSGP 43
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 55.7 bits (135), Expect = 2e-10
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
GE P++C CGKSF+Q SL +H+ +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCS 35
Score = 45.0 bits (107), Expect = 1e-06
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 341 AHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+ G+ PY+C CGKSF Q SL H
Sbjct: 1 GSSGSSGGETPYLCGQCGKSFTQRGSLAVH 30
Score = 44.6 bits (106), Expect = 2e-06
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPF 122
+ C CGK F+ +L VH+R + P
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 40.3 bits (95), Expect = 6e-05
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPY 352
C CGK+F+ + +LA H+++ S P
Sbjct: 14 CGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 34.2 bits (79), Expect = 0.008
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
P++C CG F + +L H+ +
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSCSQSG 38
Score = 33.4 bits (77), Expect = 0.013
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
GE ++C CG+ FTQRG++ H
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVH 30
Score = 31.9 bits (73), Expect = 0.051
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C QCGK + ++ SL +H
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVH 30
Score = 31.5 bits (72), Expect = 0.075
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 202 HSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
PY C C SF + G L H ++ +
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQS 37
Score = 28.0 bits (63), Expect = 1.2
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQE 638
C CG+ F G+L +H+R SQ
Sbjct: 14 CGQCGKSFTQRGSLAVHQR-SCSQS 37
Score = 27.6 bits (62), Expect = 1.6
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 635 HSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
E Y C CGK F + + H +R
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVH-QRSC 34
Score = 26.1 bits (58), Expect = 5.3
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 434 HTDERPHACQYCSATFKKSDHLKRH 458
E P+ C C +F + L H
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVH 30
Score = 25.7 bits (57), Expect = 8.7
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEK 293
Y C C ++ +L H + +
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSG 38
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.0 bits (136), Expect = 2e-10
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECS 154
+G+KP+ C+ C K+F Q L HK +HT + S
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERS-SGPS 44
Score = 50.6 bits (122), Expect = 1e-08
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCES 126
K + C C K F +L HKRVHTGE+ S
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS 45
Score = 44.5 bits (106), Expect = 2e-06
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + SG KPY C+ C K+F Q L H
Sbjct: 1 GSSGSSGSGKKPYECKECRKTFIQIGHLNQHK 32
Score = 44.1 bits (105), Expect = 3e-06
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCE 355
C C K F +L HK+ H+G++
Sbjct: 15 CKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 34.1 bits (79), Expect = 0.009
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C C F + L QH+ +HTGER
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 32.9 bits (76), Expect = 0.028
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 202 HSETRPYQCNLCNASFKRPGHLKQHGKTH 230
S +PY+C C +F + GHL QH + H
Sbjct: 7 GSGKKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 32.5 bits (75), Expect = 0.037
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S + S +PYEC C +F +H R+ H+ R +
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRV--HTGERSSGPS 44
Score = 30.6 bits (70), Expect = 0.17
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 20/64 (31%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKP 687
G S + Y+C C K F ++ +H KR+H E+
Sbjct: 1 GSSGS-SGSGKKPYECKECRKTFIQIGHLNQH-KRVHT------------------GERS 40
Query: 688 FKCN 691
+
Sbjct: 41 SGPS 44
Score = 30.2 bits (69), Expect = 0.24
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 434 HTDERPHACQYCSATFKKSDHLKRHSKT 461
+ ++P+ C+ C TF + HL +H +
Sbjct: 7 GSGKKPYECKECRKTFIQIGHLNQHKRV 34
Score = 29.8 bits (68), Expect = 0.33
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKH 872
+G++ + C C + F Q G + +H
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQH 31
Score = 27.9 bits (63), Expect = 1.4
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ + ++ C C +F + +HKR VHT ER
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKR-VHTGERSSGP 43
Score = 26.7 bits (60), Expect = 3.6
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
+ P+ C +C K + + L H
Sbjct: 10 KKPYECKECRKTFIQIGHLNQH 31
Score = 26.0 bits (58), Expect = 6.9
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 49 KYSLKNHVRIHTKEKLFICEE 69
L H R+HT E+
Sbjct: 25 IGHLNQHKRVHTGERSSGPSS 45
Score = 26.0 bits (58), Expect = 7.7
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C +C + F G L H+R VH+ E +
Sbjct: 15 CKECRKTFIQIGHLNQHKR-VHTGERSSGP 43
Score = 25.6 bits (57), Expect = 8.8
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQ 299
Y+C C+ + L H ++HTGE+
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERSSGPSS 45
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 55.6 bits (135), Expect = 2e-10
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
TGE P+ C CGK FS+ L H+ H+
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHS 36
Score = 46.0 bits (110), Expect = 6e-07
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVC 124
+ C CGKVFS L H++ H+G+
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 42.5 bits (101), Expect = 8e-06
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
C CGK FS + L +H+KTHSG
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 42.1 bits (100), Expect = 1e-05
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 341 AHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+ + +G+ PY C CGK F++ L H
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSH 31
Score = 35.6 bits (83), Expect = 0.003
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
P+ C CG F + L+ H+ H+G+
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTHSGQS 39
Score = 30.5 bits (70), Expect = 0.16
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 202 HSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ PY+C C F R L H KTH
Sbjct: 7 GTGENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 29.8 bits (68), Expect = 0.34
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 434 HTDERPHACQYCSATFKKSDHLKRHSKT 461
T E P+ C C F + D L H KT
Sbjct: 7 GTGENPYECCECGKVFSRKDQLVSHQKT 34
Score = 29.0 bits (66), Expect = 0.56
Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 400 AHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ T E C C F +++ H++ H+ + +
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQK-THSGQSGPSS 43
Score = 29.0 bits (66), Expect = 0.58
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 628 GIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
G + EN Y+C CGKVF K + H ++ H
Sbjct: 1 GSSGS-SGTGENPYECCECGKVFSRKDQLVSH-QKTH 35
Score = 28.2 bits (64), Expect = 0.96
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +CGK++++K L H
Sbjct: 10 ENPYECCECGKVFSRKDQLVSH 31
Score = 28.2 bits (64), Expect = 1.2
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQC 210
S + + PYEC C F + H + HS
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKT--HSGQSGPSS 43
Score = 27.5 bits (62), Expect = 1.7
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
TGE + C CG+ F+++ + H
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSH 31
Score = 26.3 bits (59), Expect = 5.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEK 293
Y+C C V RKD L H K H+G+
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQS 39
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 54.1 bits (131), Expect = 7e-10
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 113 KRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECS 154
+GEKPF C C K+FS S L +H+ H + S
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHA-EEKPSGPS 42
Score = 51.4 bits (124), Expect = 6e-09
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCES 126
K C C K FS + L VH++ H EKP S
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43
Score = 45.2 bits (108), Expect = 9e-07
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCET 356
C C KAFS ++ L H++TH+ +KP +
Sbjct: 13 CSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43
Score = 39.4 bits (93), Expect = 1e-04
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 343 KKTHSGDKPYVCETCGKSFAQNASLKYHHDT 373
SG+KP+ C C K+F+ + L H T
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQT 32
Score = 35.6 bits (83), Expect = 0.002
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P C C F S LL H+ H E+
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEK 37
Score = 34.0 bits (79), Expect = 0.009
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 383 FQCSQCPKKFYRNSKLNAHLKIHTEER 409
F CS C K F S L H + H EE+
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEK 37
Score = 33.7 bits (78), Expect = 0.013
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 19/59 (32%)
Query: 633 AVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFKCN 691
+ S E + C C K F SK Y+ H ++ H EKP +
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVH-QQTHA------------------EEKPSGPS 42
Score = 31.0 bits (71), Expect = 0.10
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
S +P+ C+ C +F +L H +TH E
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEE 36
Score = 29.4 bits (67), Expect = 0.46
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 171 KTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQCN 211
S +P+ C C +F + H + H+E +P +
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQT--HAEEKPSGPS 42
Score = 28.7 bits (65), Expect = 0.68
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C+ C + F + L +H++ H++E
Sbjct: 13 CSCCEKAFSSKSYLLVHQQ-THAEEKPSGP 41
Score = 28.7 bits (65), Expect = 0.75
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E PF C C K ++ KS L +H
Sbjct: 8 EKPFGCSCCEKAFSSKSYLLVH 29
Score = 28.7 bits (65), Expect = 0.76
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 403 KIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ E+ C C +F + + + H++ H +E+P
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQ-THAEEKPSGP 41
Score = 28.3 bits (64), Expect = 1.1
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 433 VHTDERPHACQYCSATFKKSDHLKRHSKT 461
+ E+P C C F +L H +T
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQT 32
Score = 25.6 bits (57), Expect = 9.1
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 848 IHTGER-HICPVCGRGFTQRGAMKKH 872
+GE+ C C + F+ + + H
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVH 29
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 53.7 bits (130), Expect = 1e-09
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
T K + C CGK+F++ L H+ IHT
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHT 36
Score = 43.0 bits (102), Expect = 7e-06
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + + K Y C CGK+F + L H
Sbjct: 1 GSSGSSGTDSKSYNCNECGKAFTRIFHLTRHQ 32
Score = 39.9 bits (94), Expect = 8e-05
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKK 85
T K + C ECGK F L RH+K
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQK 33
Score = 36.8 bits (86), Expect = 0.001
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTEN 234
++++ Y CN C +F R HL +H K H ++
Sbjct: 6 SGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKS 39
Score = 34.1 bits (79), Expect = 0.008
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
C+ CGKAF+ +L H+K H+
Sbjct: 15 CNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 33.7 bits (78), Expect = 0.010
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRHSKT 461
TD + + C C F + HL RH K
Sbjct: 2 SSGS-SGTDSKSYNCNECGKAFTRIFHLTRHQKI 34
Score = 32.6 bits (75), Expect = 0.029
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGE 852
+ + C+ CG F + L +H+ IHT +
Sbjct: 11 KSYNCNECGKAFTRIFHLTRHQKIHTRK 38
Score = 29.9 bits (68), Expect = 0.29
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 844 QHRPIHTGER-HICPVCGRGFTQRGAMKKH 872
T + + C CG+ FT+ + +H
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRH 31
Score = 28.3 bits (64), Expect = 1.1
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 630 HRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
+ +Y C+ CGK F ++ H ++IH
Sbjct: 3 SGS-SGTDSKSYNCNECGKAFTRIFHLTRH-QKIH 35
Score = 26.4 bits (59), Expect = 4.6
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 761 KINGDEPPFACPQCGKLYNKKSSLYMH 787
D + C +CGK + + L H
Sbjct: 5 SSGTDSKSYNCNECGKAFTRIFHLTRH 31
Score = 26.0 bits (58), Expect = 6.1
Identities = 7/42 (16%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
T+ ++ C+ C +F + +H++ +HT + +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQK-IHTRKSGPSS 43
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 53.3 bits (129), Expect = 1e-09
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 113 KRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
+GE P+ C CGK+F++ L H+ H
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHA 34
Score = 47.1 bits (113), Expect = 2e-07
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVC 124
+ C CGK F+ L H+R H GE
Sbjct: 9 NPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 43.7 bits (104), Expect = 3e-06
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
C CGKAF+ + L +H++TH+G+
Sbjct: 13 CSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 41.3 bits (98), Expect = 2e-05
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 343 KKTHSGDKPYVCETCGKSFAQNASLKYH 370
SG+ PY C CGK+F + L H
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISH 29
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
P+ C CG F + L+ H+ H GE P G
Sbjct: 9 NPYECSECGKAFNRKDQLISHQRTHAGESG--PSSG 42
Score = 32.5 bits (75), Expect = 0.035
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 202 HSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
S PY+C+ C +F R L H +TH E
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 30.2 bits (69), Expect = 0.23
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 632 RAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
+ S EN Y+C CGK F K + H +R H
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISH-QRTH 33
Score = 29.4 bits (67), Expect = 0.41
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 434 HTDERPHACQYCSATFKKSDHLKRHSKT 461
+ E P+ C C F + D L H +T
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRT 32
Score = 28.6 bits (65), Expect = 0.63
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 3/41 (7%)
Query: 171 KTHSDLRPYECDICNASFKTNYERKKH-RIYVHSETRPYQC 210
S PYEC C +F + H R H+
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRT--HAGESGPSS 41
Score = 28.2 bits (64), Expect = 0.98
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P+ C +CGK +N+K L H
Sbjct: 8 ENPYECSECGKAFNRKDQLISH 29
Score = 27.5 bits (62), Expect = 1.8
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 403 KIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHAC 442
+ E C C +F +++ H+R H E +
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQR-THAGESGPSS 41
Score = 27.5 bits (62), Expect = 2.0
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C++CG+ F L H+R H+ E+
Sbjct: 13 CSECGKAFNRKDQLISHQR-THAGESGPSS 41
Score = 26.7 bits (60), Expect = 3.9
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEK 293
Y+C C RKD L H + H GE
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGES 37
Score = 26.3 bits (59), Expect = 5.1
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 846 RPIHTGER-HICPVCGRGFTQRGAMKKH 872
+GE + C CG+ F ++ + H
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISH 29
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 53.3 bits (129), Expect = 1e-09
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 113 KRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
+G++ + C+ CGKSF Q SL +H+ IHT
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHT 34
Score = 46.8 bits (112), Expect = 3e-07
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPF 122
+ + C CGK F +LT+H+R+HTG P
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 41.0 bits (97), Expect = 3e-05
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPY 352
C CGK+F + +L H++ H+G P
Sbjct: 13 CQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 39.5 bits (93), Expect = 9e-05
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 343 KKTHSGDKPYVCETCGKSFAQNASLKYHH 371
SG + Y C+ CGKSF Q SL H
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHE 30
Score = 36.0 bits (84), Expect = 0.002
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
R + C CG F++ +L H IHTG
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTGSG 37
Score = 32.5 bits (75), Expect = 0.027
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 383 FQCSQCPKKFYRNSKLNAHLKIHTEER 409
++C +C K F + L H +IHT
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSG 37
Score = 31.4 bits (72), Expect = 0.079
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 206 RPYQCNLCNASFKRPGHLKQHGKTHNTE 233
R Y+C C SF++ G L H + H
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTGS 36
Score = 29.1 bits (66), Expect = 0.45
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
+ + C +CGK + +K SL +H
Sbjct: 8 QRVYECQECGKSFRQKGSLTLH 29
Score = 28.3 bits (64), Expect = 0.96
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 635 HSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
S + Y+C CGK F K + H +RIH
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLH-ERIH 33
Score = 28.3 bits (64), Expect = 1.1
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 434 HTDERPHACQYCSATFKKSDHLKRH 458
+ +R + CQ C +F++ L H
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLH 29
Score = 27.2 bits (61), Expect = 2.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEK 293
Y+C C ++K +L H ++HTG
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSG 37
Score = 26.0 bits (58), Expect = 6.2
Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 849 HTGER-HICPVCGRGFTQRGAMKKH 872
+G+R + C CG+ F Q+G++ H
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLH 29
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 52.3 bits (126), Expect = 3e-09
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 113 KRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
+GEKP+ C C ++FS ++ L H+ +HT
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 41.9 bits (99), Expect = 1e-05
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 343 KKTHSGDKPYVCETCGKSFAQNASLKYHH 371
SG+KPY C C ++F+ N L H
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQHQ 30
Score = 40.4 bits (95), Expect = 5e-05
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVC 124
K +SC C + FS L H+++HT +
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 36.9 bits (86), Expect = 0.001
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVC 354
C C + FS L H+K H+
Sbjct: 13 CAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 35.8 bits (83), Expect = 0.002
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P+ C C F ++ L+QH+ +HT +
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMHTVKS 37
Score = 35.0 bits (81), Expect = 0.005
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 383 FQCSQCPKKFYRNSKLNAHLKIHTEERA 410
+ C++C + F N++L H K+HT +
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSG 38
Score = 33.1 bits (76), Expect = 0.020
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 202 HSETRPYQCNLCNASFKRPGHLKQHGKTHNTEN 234
S +PY C C +F L QH K H ++
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKS 37
Score = 31.5 bits (72), Expect = 0.063
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 434 HTDERPHACQYCSATFKKSDHLKRHSKT 461
+ E+P++C C TF ++ L +H K
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKM 32
Score = 26.9 bits (60), Expect = 3.2
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 766 EPPFACPQCGKLYNKKSSLYMH 787
E P++C +C + ++ + L H
Sbjct: 8 EKPYSCAECKETFSDNNRLVQH 29
Score = 26.5 bits (59), Expect = 3.7
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 633 AVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
+ S E Y C C + F + +H +++H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQH-QKMH 33
Score = 26.1 bits (58), Expect = 6.0
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQC 643
C +C F +N L H++ +H+ ++
Sbjct: 13 CAECKETFSDNNRLVQHQK-MHTVKSGPSS 41
Score = 25.7 bits (57), Expect = 8.3
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 849 HTGER-HICPVCGRGFTQRGAMKKH 872
+GE+ + C C F+ + +H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQH 29
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 51.3 bits (122), Expect = 1e-08
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 96 CDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
C+ CG P+ L H R HT +P+ C C SF +L H
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Score = 50.9 bits (121), Expect = 2e-08
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 65 FICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGEK 120
+ICEECG + S L++H + H ++ + C C F NLT H + K
Sbjct: 2 YICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 48.2 bits (114), Expect = 1e-07
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDT 373
C+ CG + L H +TH+ +PY C C SF +L H +
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 43.2 bits (101), Expect = 8e-06
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 296 TCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAAHKKTHSGDK 350
CE+CG + K+H+++ H ++ C C +F + NL H K+ + K
Sbjct: 3 ICEECGIRXKKPSMLKKHIRT-HTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 42.8 bits (100), Expect = 1e-05
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 150 RYECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKH 197
+Y C C + + S L H++TH+D+RPY C CN SFKT KH
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 41.2 bits (96), Expect = 4e-05
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 122 FVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHS 174
++CE CG + S L H HT + Y C++C F LT H+K+ +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVR-PYHCTYCNFSFKTKGNLTKHMKSKA 53
Score = 40.9 bits (95), Expect = 5e-05
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 352 YVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHLKIHTEER 409
Y+CE CG + + LK H T R + C+ C F L H+K +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRT---HTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 38.5 bits (89), Expect = 3e-04
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 179 YECDICNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQHGKTHNTENK 235
Y C+ C K KKH I H++ RPY C CN SFK G+L +H K+ K
Sbjct: 2 YICEECGIRXKKPSMLKKH-IRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 38.2 bits (88), Expect = 4e-04
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 827 HMCDLCGARFKKSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKHVST 875
++C+ CG R KK S L +H HT R + C C F +G + KH+ +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 38.2 bits (88), Expect = 5e-04
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 383 FQCSQCPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDER 438
+ C +C + + S L H++ HT+ R C CN SFKT + KH + +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK-SKAHSK 56
Score = 37.4 bits (86), Expect = 8e-04
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 266 RYQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKS 316
+Y C C I K+ L+ H++ HT + C C +H+KS
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 37.4 bits (86), Expect = 0.001
Identities = 13/54 (24%), Positives = 21/54 (38%)
Query: 800 VCEACGKHVINIRNHMRQVHLYPEVRPHMCDLCGARFKKSSALLQHRPIHTGER 853
+CE CG + + + +VRP+ C C FK L +H +
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 36.2 bits (83), Expect = 0.002
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 413 CDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHLKRHSKTAHKE 465
C+ C K + +KKH R HTD RP+ C YC+ +FK +L +H K+
Sbjct: 4 CEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 35.5 bits (81), Expect = 0.004
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 43 SRQHLSKYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKK 85
+ LK H+R HT + + C C F T L +H K
Sbjct: 8 GIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 33.2 bits (75), Expect = 0.031
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIK 661
C +CG L H R H+ Y C C F +K + +H+K
Sbjct: 4 CEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 30.1 bits (67), Expect = 0.35
Identities = 19/86 (22%), Positives = 23/86 (26%), Gaps = 31/86 (36%)
Query: 208 YQCNLCNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITWGVDMVRY 267
Y C C K+P LK+H +TH Y
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRP-------------------------------Y 30
Query: 268 QCPMCQIVLKRKDTLRHHLKLHTGEK 293
C C K K L H+K K
Sbjct: 31 HCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 26.2 bits (57), Expect = 8.3
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 761 KINGDEPPFACPQCGKLYNKKSSLYMHLSTKHG 793
+ + D P+ C C + K +L H+ +K
Sbjct: 22 RTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 49.9 bits (119), Expect = 2e-08
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCESC 127
K +C++CGK+F +L HK H+GEKP+
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 44.2 bits (104), Expect = 3e-06
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 322 KDLCCDMCGKAFSCQTNLAAHKKTHSGDKPYVCETC 357
K + C++CGK F +L HK +HSG+KPY
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 38.8 bits (90), Expect = 2e-04
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 405 HTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSA 447
+ C+IC F+ + +HK H+ E+P++ S
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKL-SHSGEKPYSSGPSSG 48
Score = 37.6 bits (87), Expect = 5e-04
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 171 KTHSDLRPYECDICNASFKTNYERKKHRIYVHSETRPYQCNLCNA 215
+ + C+IC F+ Y +H++ HS +PY +
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKL-SHSGEKPYSSGPSSG 48
Score = 37.6 bits (87), Expect = 6e-04
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 822 PEVRPHMCDLCGARFKKSSALLQHRPIHTGER 853
+ C++CG F+ L +H+ H+GE+
Sbjct: 8 RTRKQVACEICGKIFRDVYHLNRHKLSHSGEK 39
Score = 36.8 bits (85), Expect = 0.001
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 114 RVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
K CE CGK F L HK+ H+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHS 36
Score = 34.9 bits (80), Expect = 0.006
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 150 RYECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNA 186
+ C C K F L H +HS +PY +
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG 48
Score = 34.5 bits (79), Expect = 0.007
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 202 HSETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+ C +C F+ HL +H +H+ E
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGE 38
Score = 34.1 bits (78), Expect = 0.010
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 434 HTDERPHACQYCSATFKKSDHLKRHSKT 461
+ AC+ C F+ HL RH +
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLS 34
Score = 33.0 bits (75), Expect = 0.023
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 600 GQTTSGTRRFQLCACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPC 646
G + S R + AC CG++F + L H+ HS E Y P
Sbjct: 1 GSSGSSGRTRKQVACEICGKIFRDVYHLNRHKL-SHSGEKPYSSGPS 46
Score = 31.1 bits (70), Expect = 0.11
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 380 KRLFQCSQCPKKFYRNSKLNAHLKIHTEERACFCDICN 417
++ C C K F LN H H+ E+ +
Sbjct: 10 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 31.1 bits (70), Expect = 0.13
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 344 KTHSGDKPYVCETCGKSFAQNASLKYH 370
+ K CE CGK F L H
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRH 31
Score = 28.0 bits (62), Expect = 1.4
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 266 RYQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQC 300
+ C +C + + L H H+GEK +
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 26.4 bits (58), Expect = 6.4
Identities = 11/59 (18%), Positives = 16/59 (27%), Gaps = 19/59 (32%)
Query: 635 HSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFKCNLC 693
C+ CGK+F ++ H K H EKP+
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRH-KLSHSG------------------EKPYSSGPS 46
Score = 26.1 bits (57), Expect = 7.2
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 48 SKYSLKNHVRIHTKEKLFICEEC 70
Y L H H+ EK +
Sbjct: 24 DVYHLNRHKLSHSGEKPYSSGPS 46
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 49.6 bits (119), Expect = 3e-08
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 112 HKRVHTGEKPFVC--ESCGKSFSQHSSLFIHKMIHTQRQYRYECS 154
TGEKPF C CG FS+ L H+ H+ S
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHS-GVKPSGPS 46
Score = 49.6 bits (119), Expect = 3e-08
Identities = 18/73 (24%), Positives = 22/73 (30%), Gaps = 27/73 (36%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHK 113
+ T EK F C G CG FS L+ H+
Sbjct: 2 SSGSSGTGEKPFACTWPG---------------------------CGWRFSRSDELSRHR 34
Query: 114 RVHTGEKPFVCES 126
R H+G KP S
Sbjct: 35 RSHSGVKPSGPSS 47
Score = 42.3 bits (100), Expect = 1e-05
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 340 AAHKKTHSGDKPYVC--ETCGKSFAQNASLKYHHDTVHALVKKRLFQCS 386
+ + +G+KP+ C CG F+++ L H + H+ VK S
Sbjct: 1 GSSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS-HSGVKP--SGPS 46
Score = 38.4 bits (90), Expect = 3e-04
Identities = 17/72 (23%), Positives = 22/72 (30%), Gaps = 27/72 (37%)
Query: 285 HLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAAHKK 344
TGEK C G CG FS L+ H++
Sbjct: 3 SGSSGTGEKPFACTWPG---------------------------CGWRFSRSDELSRHRR 35
Query: 345 THSGDKPYVCET 356
+HSG KP +
Sbjct: 36 SHSGVKPSGPSS 47
Score = 37.7 bits (88), Expect = 5e-04
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 429 HKRFVHTDERPHACQY--CSATFKKSDHLKRHSKT 461
T E+P AC + C F +SD L RH ++
Sbjct: 3 SGS-SGTGEKPFACTWPGCGWRFSRSDELSRHRRS 36
Score = 36.5 bits (85), Expect = 0.001
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 400 AHLKIHTEER--ACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQ 443
+ T E+ AC C F +E+ +H+R H+ +P
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRR-SHSGVKPSGPS 46
Score = 33.4 bits (77), Expect = 0.017
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 825 RPHMCD--LCGARFKKSSALLQHRPIHTGER 853
+P C CG RF +S L +HR H+G +
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVK 41
Score = 31.9 bits (73), Expect = 0.060
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 168 SHLKTHSDLRPYECD--ICNASFKTNYERKKHRIYVHSETRPYQCN 211
S + + +P+ C C F + E +HR HS +P +
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHR-RSHSGVKPSGPS 46
Score = 28.4 bits (64), Expect = 0.90
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 201 VHSETRPYQCN--LCNASFKRPGHLKQHGKTHNTENK 235
+ +P+ C C F R L +H ++H+
Sbjct: 6 SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 26.9 bits (60), Expect = 3.4
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 845 HRPIHTGER-HIC--PVCGRGFTQRGAMKKHVST 875
TGE+ C P CG F++ + +H +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS 36
Score = 26.5 bits (59), Expect = 4.5
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 599 HGQTTSGTRRFQLCACTDCGRMFYNNGALGIHRRAVHSQENTYQCD 644
G + +G + F C CG F + L HRR HS
Sbjct: 3 SGSSGTGEKPFA-CTWPGCGWRFSRSDELSRHRR-SHSGVKPSGPS 46
Score = 26.5 bits (59), Expect = 5.0
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 267 YQC--PMCQIVLKRKDTLRHHLKLHTGEKFVTCE 298
+ C P C R D L H + H+G K
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 6e-08
Identities = 79/561 (14%), Positives = 148/561 (26%), Gaps = 214/561 (38%)
Query: 2 QDFTIVTFVIKLSNKNASW------------QNTTEMYISLLDLTSVPYVLPHSRQHLSK 49
Q+ + FV ++ N + T MYI D L + Q +K
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD------RLYNDNQVFAK 128
Query: 50 YSLKNHV-RIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTN 108
Y +V R+ KL ++A+ L+++ N
Sbjct: 129 Y----NVSRLQPYLKL-------------------RQAL-LELRPAK------------N 152
Query: 109 LTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKF---FRNSK 165
+ + G GK+ + + Y+ +C K F +N
Sbjct: 153 VLID-----GVL-----GSGKT-----WV----ALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 166 LTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQ 225
+ L + + N+ + HS + + A +R K
Sbjct: 194 -----SPETVLEMLQ-KLLY-QIDPNWTSRSD----HSSNIKLRIHSIQAELRRLLKSKP 242
Query: 226 HGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITWGVDMVRYQCPMCQIVLKRK----DT 281
+ LL V L + Q + C + ++ R D
Sbjct: 243 Y-------ENCLL---V----------LLNVQNAKAWNAFNLSCKI--LLTTRFKQVTDF 280
Query: 282 L----RHHLKL-HTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQ 336
L H+ L H E K L LK + + +DL ++
Sbjct: 281 LSAATTTHISLDHHSMTLTPDE--VKSL-----L---LKYLDCRPQDLPREVL------- 323
Query: 337 TNLAAHKKTHSGDKPYVCETCGKSFAQNAS-----LKYHHDTVHALVK-----------K 380
T+ P +S + + D + +++ +
Sbjct: 324 -------TTN----PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 381 RLFQ-CSQCPK--------------------------KFYRNSKLNAHLK-----IHTEE 408
++F S P K ++ S + K I
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP--- 429
Query: 409 RACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKS--D-----HLKRHSKT 461
+ + ++ +NE H+ V D + S D H+ H K
Sbjct: 430 -SIYLELKVKL---ENEYALHRSIV--DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 462 AHKEMYQSEDIDQQTILLDPR 482
E + + + + LD R
Sbjct: 484 I--EHPERMTLFRM-VFLDFR 501
Score = 44.5 bits (104), Expect = 2e-04
Identities = 40/274 (14%), Positives = 76/274 (27%), Gaps = 56/274 (20%)
Query: 4 FTIVTFVIKLSNKNASWQN---------TTEMYISLLDLTSVPYVLPHSRQHLSKYS-LK 53
+ + + A+W N TT + SL L P R+ + S
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE--PAEY---RKMFDRLSVFP 382
Query: 54 NHVRIHTK--------EKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSC 105
I T + S + + K + I ++ K
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK---L 439
Query: 106 PTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMI--HTQRQYRYECSHCQKKFFRN 163
+H+ + + + + I H + E + F +
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499
Query: 164 -----SKL----------TSHLKTHSDLRPYECDICNASFKTNYERKKHRI--YVHSETR 206
K+ S L T L+ Y+ IC+ YER + I ++
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND--PKYERLVNAILDFLPK--- 554
Query: 207 PYQCNLCNASFKRPGHLKQHGKTHNTENKGLLEE 240
+ NL + + L + E++ + EE
Sbjct: 555 -IEENLICSKYTD---LLRIAL--MAEDEAIFEE 582
Score = 39.8 bits (92), Expect = 0.005
Identities = 81/621 (13%), Positives = 165/621 (26%), Gaps = 199/621 (32%)
Query: 401 HLKIHT-EERACFCDICNH---SFKTD---NEVKKHKRFVHTDE-------RPHACQYCS 446
H+ T E + + DI + +F + +V+ + + + E A
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 447 ATF-----KKSDHLKRHSKTAHKEMY-------QSEDIDQQTILLDPRTYVHPYVPYQGD 494
F K+ + +++ + + Y ++E + R Y+ D
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS---MMTRMYIEQRDRLYND 122
Query: 495 PHDLKKISISRVHT----RK--------------------KELLVSSTCAQQDPEPLQSA 530
K ++SR+ R+ K + C +
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 531 SI------EVITPNA--DPSQNLFCIKCNASFTSSP-----------AMQSHLK-----K 566
I +P + Q L + + ++TS ++Q+ L+ K
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 567 VH--------NFSNP---NRFDC-C-------FCSEIFNLKKDYHEHLKKEH---GQTTS 604
+ N N N F+ C F L H+ +H T
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 605 GTRRFQLCA-CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRI 663
+ L DC L + R + + +R+ +
Sbjct: 302 EVK--SLLLKYLDCRPQDLPREVLTTNPRRL-------------SIIAES--IRDGLATW 344
Query: 664 ----HINQGRVRKQREPRPPAKPDSEKPFKCNLCGTGFESDRQVSGHRVNCAFFVLKPEE 719
H+N ++ E + + +P R+ + F P
Sbjct: 345 DNWKHVNCDKLTTIIE----SSLNVLEP----------AEYRK---MFDRLSVF---PPS 384
Query: 720 AKLTGELTAT----TPDKESFVIMPKLKKK---KKEDKIGTVR----------------- 755
A + L + + V++ KL K +K+ K T+
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 756 ---------QSKLGKINGDEPP--------------FACPQCGKLYNKKSSLYMHLSTKH 792
+ D P + + +++
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 793 GK-RSEPTVCEACGKHVINIRNHMRQVHLYPEVRPHMCDLCGARFKKSSALLQHRPIHTG 851
K R + T A G +I N ++Q+ Y +P++CD + +A+L P
Sbjct: 505 QKIRHDSTAWNASG----SILNTLQQLKFY---KPYICDNDPKYERLVNAILDFLPKIEE 557
Query: 852 ERHICPVCGRGFTQRGAMKKH 872
+ M +
Sbjct: 558 NLICSKYT--DLLRIALMAED 576
Score = 35.2 bits (80), Expect = 0.12
Identities = 60/420 (14%), Positives = 110/420 (26%), Gaps = 112/420 (26%)
Query: 3 DFTIVTFVIKLSNKNASWQNTTEMYISL---LDLTSVPYVLPHSRQHLSKYSLKNHVRIH 59
DF I F + L N N S + EM L +D S L +S++ +R
Sbjct: 181 DFKI--FWLNLKNCN-SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 60 TKEK-----LFICEE-------------CGKQFVTS----------SALRRHKKAVHLKI 91
K K L + C K +T+ +A H H +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 92 ---KDHSCDVCGKVFSCPTN------LTVHKRVHTGEKPFVCESCGKSFSQHSS------ 136
D + K C LT + P +S +
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTN--------PRRLSIIAESIRDGLATWDNWK 348
Query: 137 -LFIHKMIHTQR-----QYRYECSHCQKKF--FR-NSKLTSH-LKTH-SDLRPYEC-DIC 184
+ K+ E + F ++ + + L D+ + +
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 185 NASFKT---NYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQHGKTHNTENKGLLEEH 241
N K + K+ I + S + L+ H + +++ +
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKV-----------KLENEYALHRS----IVDHY 453
Query: 242 ----VFSCKAKRKENLDSYQITW-------GVDMVRYQCPMCQIVL-----KRKDTLRHH 285
F LD Y ++ + L ++K +RH
Sbjct: 454 NIPKTFDSDDLIPPYLDQY-FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK--IRH- 509
Query: 286 LKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAAHKKT 345
+ L + +K ++ K + L + + NL K T
Sbjct: 510 ----DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 49.1 bits (116), Expect = 2e-07
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 144 HTQRQYRYECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHS 203
+ + Y+C C K + SH + + C C+ F + +++H
Sbjct: 10 PVENKEVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEHE--SKC 65
Query: 204 ETRPYQCNLCNASFKRPGHLKQHGKTHNTEN 234
E + C C +FK + +H + +N
Sbjct: 66 EYKKLTCLECMRTFKSSFSIWRHQVEVHNQN 96
Score = 49.1 bits (116), Expect = 3e-07
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 380 KRLFQCSQCPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERP 439
K ++QC C K + +H ++ A C C+ F + ++H+ + +
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES--KCEYKK 69
Query: 440 HACQYCSATFKKSDHLKRHSKTAHKE 465
C C TFK S + RH H +
Sbjct: 70 LTCLECMRTFKSSFSIWRHQVEVHNQ 95
Score = 48.4 bits (114), Expect = 5e-07
Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 118 GEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSDLR 177
++ + C C S H+ + + C +C +FF H ++ + +
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLC---RNAAVCPYCSLRFFSPELKQEH-ESKCEYK 68
Query: 178 PYECDICNASFKTNYERKKHRIYVHSE 204
C C +FK+++ +H++ VH++
Sbjct: 69 KLTCLECMRTFKSSFSIWRHQVEVHNQ 95
Score = 43.4 bits (101), Expect = 2e-05
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
Query: 62 EKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
++++ C C + + H++ C C F P H+ K
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLCRNAAV---CPYCSLRFFSPELKQEHES-KCEYKK 69
Query: 122 FVCESCGKSFSQHSSLFIHKM-IHTQ 146
C C ++F S++ H++ +H Q
Sbjct: 70 LTCLECMRTFKSSFSIWRHQVEVHNQ 95
Score = 43.0 bits (100), Expect = 3e-05
Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 6/97 (6%)
Query: 341 AHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNA 400
+ + Y C C + H C C +F+
Sbjct: 6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR-----NAAVCPYCSLRFFSPELKQE 60
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDE 437
H + E + C C +FK+ + +H+ VH
Sbjct: 61 H-ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQN 96
Score = 42.2 bits (98), Expect = 7e-05
Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 4/85 (4%)
Query: 291 GEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAAHKKTHSGDK 350
++ C C +L + H + C C F L ++ K
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNAAV---CPYCSLRFF-SPELKQEHESKCEYK 68
Query: 351 PYVCETCGKSFAQNASLKYHHDTVH 375
C C ++F + S+ H VH
Sbjct: 69 KLTCLECMRTFKSSFSIWRHQVEVH 93
Score = 39.1 bits (90), Expect = 6e-04
Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 5/91 (5%)
Query: 787 HLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPEVRPHMCDLCGARFKKSSALLQHR 846
++ + + +C A ++ +H R +C C RF +H
Sbjct: 8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR-----NAAVCPYCSLRFFSPELKQEHE 62
Query: 847 PIHTGERHICPVCGRGFTQRGAMKKHVSTLH 877
++ C C R F ++ +H +H
Sbjct: 63 SKCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93
Score = 36.8 bits (84), Expect = 0.004
Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 5/92 (5%)
Query: 81 RRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIH 140
V K + + C +C S H+R+ VC C F H
Sbjct: 5 SSGASPVENK-EVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEH 61
Query: 141 KMIHTQRQYRYECSHCQKKFFRNSKLTSHLKT 172
+ ++ C C + F + + H
Sbjct: 62 ESKCEYKKLT--CLECMRTFKSSFSIWRHQVE 91
Score = 36.4 bits (83), Expect = 0.007
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQHG 227
S + Y+C +CNA + E+ H + C C+ F P ++H
Sbjct: 6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAA---VCPYCSLRFFSPELKQEHE 62
Query: 228 KTHNTENKGLLE 239
+ LE
Sbjct: 63 SKCEYKKLTCLE 74
Score = 36.0 bits (82), Expect = 0.009
Identities = 20/114 (17%), Positives = 29/114 (25%), Gaps = 34/114 (29%)
Query: 205 TRPYQCNLCNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITWGVDM 264
YQC LCNA H +
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLCRN-------------------------------- 41
Query: 265 VRYQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVH 318
CP C + + + H +K TC +C + ++ RH VH
Sbjct: 42 -AAVCPYCSLRFFSPELKQEHESKCEYKKL-TCLECMRTFKSSFSIWRHQVEVH 93
Score = 35.6 bits (81), Expect = 0.012
Identities = 14/93 (15%), Positives = 25/93 (26%), Gaps = 12/93 (12%)
Query: 572 NPNRFDCCFCSEIFNLKKDYHEHLKKEHGQTTSGTRRFQLCACTDCGRMFYNNGALGIHR 631
N + C C+ + + H + C C F++ H
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNAA----------VCPYCSLRFFSPELKQEHE 62
Query: 632 RAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
+ C C + F S + H +H
Sbjct: 63 S--KCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93
Score = 34.9 bits (79), Expect = 0.025
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 38 YVLPHSRQHLSKYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVH 88
V P+ LK + K C EC + F +S ++ RH+ VH
Sbjct: 43 AVCPYCSLRFFSPELKQEHESKCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93
Score = 34.1 bits (77), Expect = 0.045
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 14/93 (15%)
Query: 547 CIKCNASFTSSPAMQSHLKKVHNFSNPNRFDCCFCSEIFNLKKDYHEHLKKEHGQTTSGT 606
C CNA +S SH + N C +CS F + EH ++
Sbjct: 19 CRLCNAKLSSLLEQGSHERLCRN-----AAVCPYCSLRFFSPELKQEH------ESKCEY 67
Query: 607 RRFQLCACTDCGRMFYNNGALGIHRRAVHSQEN 639
++ C +C R F ++ ++ H+ VH+Q N
Sbjct: 68 KKLT---CLECMRTFKSSFSIWRHQVEVHNQNN 97
Score = 31.4 bits (70), Expect = 0.34
Identities = 20/112 (17%), Positives = 28/112 (25%), Gaps = 26/112 (23%)
Query: 597 KEHGQTTSGTRRFQLCACTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYM 656
+Q C C + G H R N C C F S +
Sbjct: 5 SSGASPVENKEVYQ---CRLCNAKLSSLLEQGSHERLCR---NAAVCPYCSLRFFSPELK 58
Query: 657 REHIKRIHINQGRVRKQREPRPPAKPDSEKPFKCNLCGTGFESDRQVSGHRV 708
+EH + K C C F+S + H+V
Sbjct: 59 QEHESKC--------------------EYKKLTCLECMRTFKSSFSIWRHQV 90
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 44.2 bits (105), Expect = 2e-06
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIH 144
R TG KPF C C +SFS+ L +H+ H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 38.5 bits (90), Expect = 2e-04
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 434 HTDERPHACQYCSATFKKSDHLKRHSKT 461
T +P C C +F +SDHL H K
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRKR 33
Score = 36.9 bits (86), Expect = 8e-04
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 342 HKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+ +G KP+ C C +SF+++ L H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALH 30
Score = 36.5 bits (85), Expect = 0.001
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 202 HSETRPYQCNLCNASFKRPGHLKQHGKTH 230
+ +P+QC C+ SF R HL H K H
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 36.2 bits (84), Expect = 0.001
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKI 91
R T K F C +C + F S L H+K H+ +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK-RHMLV 37
Score = 31.5 bits (72), Expect = 0.069
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 383 FQCSQCPKKFYRNSKLNAHLKIH 405
FQC C + F R+ L H K H
Sbjct: 12 FQCPDCDRSFSRSDHLALHRKRH 34
Score = 28.1 bits (63), Expect = 1.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 318 HLKIKDLCCDMCGKAFSCQTNLAAHKKTH 346
IK C C ++FS +LA H+K H
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 27.7 bits (62), Expect = 1.3
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 845 HRPIHTGER-HICPVCGRGFTQRGAMKKHVSTLHHLVL 881
TG + CP C R F++ + H H+++
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR--HMLV 37
Score = 26.5 bits (59), Expect = 4.1
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 88 HLKIKDHSCDVCGKVFSCPTNLTVHKRVH 116
IK C C + FS +L +H++ H
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 26.1 bits (58), Expect = 5.3
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 824 VRPHMCDLCGARFKKSSALLQHRPIH 849
++P C C F +S L HR H
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 25.8 bits (57), Expect = 8.2
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 169 HLKTHSDLRPYECDICNASF 188
+ + ++P++C C+ SF
Sbjct: 2 STRGSTGIKPFQCPDCDRSF 21
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 44.5 bits (105), Expect = 2e-06
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
GE PF C C + F+Q + L H+ H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 37.1 bits (86), Expect = 7e-04
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHH 371
+ + +G+ P+ C C + F Q L H
Sbjct: 1 GSSGSSGAGENPFKCSKCDRVFTQRNYLVQHE 32
Score = 34.8 bits (80), Expect = 0.006
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 202 HSETRPYQCNLCNASFKRPGHLKQHGKTHNTEN 234
+ P++C+ C+ F + +L QH +TH ++
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 34.1 bits (78), Expect = 0.009
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
C C +VF+ L H+R H +
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 32.9 bits (75), Expect = 0.027
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 383 FQCSQCPKKFYRNSKLNAHLKIHTEERA 410
F+CS+C + F + + L H + H +
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 32.5 bits (74), Expect = 0.029
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
P C C F + + L+QH H +
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 31.4 bits (71), Expect = 0.074
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 632 RAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
+ + EN ++C C +VF + Y+ +H +R H
Sbjct: 4 GSSGAGENPFKCSKCDRVFTQRNYLVQH-ERTH 35
Score = 31.4 bits (71), Expect = 0.097
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKP 351
C C + F+ + L H++TH+
Sbjct: 15 CSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 30.2 bits (68), Expect = 0.21
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 151 YECSHCQKKFFRNSKLTSHLKTHSD 175
++CS C + F + + L H +TH+
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 30.2 bits (68), Expect = 0.23
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 54 NHVRIHTKEKLFICEECGKQFVTSSALRRHKK 85
+ E F C +C + F + L +H++
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHER 33
Score = 28.3 bits (63), Expect = 0.98
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 434 HTDERPHACQYCSATFKKSDHLKRHSKT 461
E P C C F + ++L +H +T
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHERT 34
Score = 27.9 bits (62), Expect = 1.6
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKRSE 797
E PF C +C +++ +++ L H T K
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHARKSGP 41
Score = 27.1 bits (60), Expect = 2.9
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEK 293
++C C V +++ L H + H +
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHARKS 39
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 45.3 bits (106), Expect = 8e-06
Identities = 25/121 (20%), Positives = 39/121 (32%), Gaps = 8/121 (6%)
Query: 347 SGDKPYVC--ETCGKSFAQNASLKYHHDTVHA--LVKKRLFQCSQCPKKFYRNSKLNAHL 402
SG K Y+ + +YH T L++ + P+ +S L L
Sbjct: 8 SGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL 67
Query: 403 KIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHLKRHSKTA 462
+ C +C F + +K+H R E C C F +D H
Sbjct: 68 ASKAISQFV-CPLCLMPFSSSVSLKQHIR---YTEHTKVCPVCKKEFTSTDSALDHVCKK 123
Query: 463 H 463
H
Sbjct: 124 H 124
Score = 43.8 bits (102), Expect = 3e-05
Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 3/108 (2%)
Query: 772 PQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEAC--GKHVINIRNHMRQVHLYPEVRPHMC 829
+ H T KR + + +++ +++ ++ + +C
Sbjct: 18 KGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVC 77
Query: 830 DLCGARFKKSSALLQHRPIHTGERHICPVCGRGFTQRGAMKKHVSTLH 877
LC F S +L QH + +CPVC + FT + HV H
Sbjct: 78 PLCLMPFSSSVSLKQHIRYTEHTK-VCPVCKKEFTSTDSALDHVCKKH 124
Score = 42.2 bits (98), Expect = 9e-05
Identities = 19/123 (15%), Positives = 37/123 (30%), Gaps = 9/123 (7%)
Query: 115 VHTGEKPFVC--ESCGKSFSQHSSLFIHKMIHTQRQYRYE---CSHCQKKFFRNSKLTSH 169
V +G K ++ + + H++ Q++ + S
Sbjct: 6 VDSGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYR 65
Query: 170 LKTHSDLRPYECDICNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQH-GK 228
L + + C +C F ++ K+H + C +C F H K
Sbjct: 66 LLASKAISQFVCPLCLMPFSSSVSLKQH---IRYTEHTKVCPVCKKEFTSTDSALDHVCK 122
Query: 229 THN 231
HN
Sbjct: 123 KHN 125
Score = 39.1 bits (90), Expect = 0.001
Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 5/111 (4%)
Query: 270 PMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDL---CC 326
I + ++ R+H ++ + + + L K + C
Sbjct: 18 KGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVC 77
Query: 327 DMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHAL 377
+C FS +L H + + VC C K F S H H +
Sbjct: 78 PLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 38.8 bits (89), Expect = 0.002
Identities = 27/122 (22%), Positives = 39/122 (31%), Gaps = 10/122 (8%)
Query: 26 MYISLLDLTSVPYVLPH-------SRQHLSKYSLKNHVRIHTKEKLFICEECGKQFVTSS 78
M S +D S Y+ H + + L +Y + + Q + S
Sbjct: 1 MTESDVDSGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDES 60
Query: 79 ALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLF 138
+ A I C +C FS +L H R E VC C K F+ S
Sbjct: 61 SYLYRLLASKA-ISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSAL 117
Query: 139 IH 140
H
Sbjct: 118 DH 119
Score = 38.0 bits (87), Expect = 0.003
Identities = 19/122 (15%), Positives = 35/122 (28%), Gaps = 10/122 (8%)
Query: 282 LRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAA 341
+ +L H G + ++L + K + I +++
Sbjct: 10 SKKYLSNHKG---IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHN--PQLLDESSYLY 64
Query: 342 HKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAH 401
+VC C F+ + SLK H + C C K+F H
Sbjct: 65 RLLASKAISQFVCPLCLMPFSSSVSLKQ-----HIRYTEHTKVCPVCKKEFTSTDSALDH 119
Query: 402 LK 403
+
Sbjct: 120 VC 121
Score = 37.2 bits (85), Expect = 0.005
Identities = 12/111 (10%), Positives = 32/111 (28%), Gaps = 5/111 (4%)
Query: 99 CGKVFSCPTNLTVHKRVHTGEKPFVC---ESCGKSFSQHSSLFIHKMIHTQRQYRYECSH 155
+ H+ ++ S ++++++ ++ ++ C
Sbjct: 20 IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPL 79
Query: 156 CQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSETR 206
C F + L H++ C +C F + H H+
Sbjct: 80 CLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDSALDHVCKKHNICV 128
Score = 32.2 bits (72), Expect = 0.23
Identities = 15/114 (13%), Positives = 31/114 (27%), Gaps = 6/114 (5%)
Query: 322 KDLCCDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKR 381
K + + + L +K + +++ L +
Sbjct: 18 KGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAI----S 73
Query: 382 LFQCSQCPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHT 435
F C C F + L H++ + C +C F + + H H
Sbjct: 74 QFVCPLCLMPFSSSVSLKQHIRYTEHTKVC--PVCKKEFTSTDSALDHVCKKHN 125
Score = 31.4 bits (70), Expect = 0.42
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
C C F ++ +L H R E+T C C K F S +H+ + H
Sbjct: 77 CPLCLMPFSSSVSLKQHIR---YTEHTKVCPVCKKEFTSTDSALDHVCKKH 124
Score = 30.7 bits (68), Expect = 0.99
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 838 KSSALLQHRPIHTGERHICPVCGRGFTQRGAMKKHVSTLHH 878
+SS L + + +CP+C F+ ++K+H+ H
Sbjct: 59 ESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEH 99
Score = 28.7 bits (63), Expect = 3.9
Identities = 14/96 (14%), Positives = 24/96 (25%), Gaps = 3/96 (3%)
Query: 374 VHALVKKRLFQCSQCPKKFYRNSKLNAHLKIHTEERACFCDI---CNHSFKTDNEVKKHK 430
V + KK L H ++R + ++ D ++
Sbjct: 6 VDSGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYR 65
Query: 431 RFVHTDERPHACQYCSATFKKSDHLKRHSKTAHKEM 466
C C F S LK+H +
Sbjct: 66 LLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTK 101
Score = 27.6 bits (60), Expect = 9.5
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHG 793
E CP C K + S H+ KH
Sbjct: 98 EHTKVCPVCKKEFTSTDSALDHVCKKHN 125
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 43.7 bits (102), Expect = 3e-04
Identities = 6/53 (11%), Positives = 10/53 (18%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIH 144
+ + S + + C C L H H
Sbjct: 151 STRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 42.9 bits (100), Expect = 6e-04
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 120 KPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSD 175
+ E+ S+H + + + Y+C C F L +H+ +H
Sbjct: 151 STRIAEATSAIVSKHPARVGLPPTASS-GHGYQCHVCSAVLFSPLDLDAHVASHGL 205
Score = 39.8 bits (92), Expect = 0.004
Identities = 8/33 (24%), Positives = 10/33 (30%)
Query: 84 KKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVH 116
+ C VC V P +L H H
Sbjct: 171 LPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 38.7 bits (89), Expect = 0.011
Identities = 25/202 (12%), Positives = 49/202 (24%), Gaps = 5/202 (2%)
Query: 653 KKYMREHIKRIHINQGRVRKQREPRPPAKPDSEKPFKCNLCGTGFESDRQVSGHRVNCAF 712
K+ R+ + ++ + D + S+R+ R A
Sbjct: 2 KRIPRKTKGKSSGKGNDSTERSDDGSSQLRDKQNNKAGPATTEPGTSNREQYRARPGIAS 61
Query: 713 FVLKPEEAKLTGELTATTPDKESFVIMPKLKKKKKEDKIGTVRQSKLGKINGDEP----- 767
E A+L + + L + E K ++ + D+
Sbjct: 62 VQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQVT 121
Query: 768 PFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPEVRPH 827
+S + + K + EA V + +
Sbjct: 122 YSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGY 181
Query: 828 MCDLCGARFKKSSALLQHRPIH 849
C +C A L H H
Sbjct: 182 QCHVCSAVLFSPLDLDAHVASH 203
Score = 36.8 bits (84), Expect = 0.046
Identities = 7/34 (20%), Positives = 10/34 (29%)
Query: 314 LKSVHLKIKDLCCDMCGKAFSCQTNLAAHKKTHS 347
L C +C +L AH +H
Sbjct: 171 LPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHG 204
Score = 36.4 bits (83), Expect = 0.047
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 201 VHSETRPYQCNLCNASFKRPGHLKQHGKTHNTENKGLL 238
S YQC++C+A P L H +H L
Sbjct: 174 TASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTL 211
Score = 35.6 bits (81), Expect = 0.086
Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 634 VHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
S + YQC C V S + H H
Sbjct: 174 TASSGHGYQCHVCSAVLFSPLDLDAH-VASH 203
Score = 35.6 bits (81), Expect = 0.096
Identities = 8/48 (16%), Positives = 10/48 (20%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDT 373
+ S T S Y C C L H +
Sbjct: 155 AEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVAS 202
Score = 35.2 bits (80), Expect = 0.11
Identities = 7/55 (12%), Positives = 11/55 (20%), Gaps = 3/55 (5%)
Query: 34 TSVPYVLPHSRQHLSKYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVH 88
T + + + C C + L H A H
Sbjct: 152 TRIAEATSAIVSKHPARVGLP--PTASSGHGYQCHVCSAVLFSPLDLDAH-VASH 203
Score = 34.1 bits (77), Expect = 0.30
Identities = 9/75 (12%), Positives = 19/75 (25%), Gaps = 4/75 (5%)
Query: 340 AAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALV----KKRLFQCSQCPKKFYRN 395
+ + + +++ H L +QC C +
Sbjct: 134 SRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSP 193
Query: 396 SKLNAHLKIHTEERA 410
L+AH+ H
Sbjct: 194 LDLDAHVASHGLHGN 208
Score = 33.7 bits (76), Expect = 0.35
Identities = 22/165 (13%), Positives = 46/165 (27%), Gaps = 9/165 (5%)
Query: 717 PEEAKLTGELTATTPDKESFVIMPKLKKKKKEDKIGTVRQSKLGKINGDEPPFACPQCGK 776
E+ + + + ES + K + DK G R + + + + +
Sbjct: 50 REQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEADEATQKQ 109
Query: 777 LYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPEVRPHMCDLCGARF 836
+ S + E ++ Q + + + A
Sbjct: 110 AKDTDKS---KAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTR----IAEATSAIV 162
Query: 837 KKSSALLQHRPIHTGER-HICPVCGRGFTQRGAMKKHVSTLHHLV 880
K A + P + + C VC + HV++ H L
Sbjct: 163 SKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVAS-HGLH 206
Score = 32.1 bits (72), Expect = 1.1
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 515 VSSTCAQQDPEPLQSASIEVITPNADPSQNLF-CIKCNASFTSSPAMQSHL 564
+S+ A+ + V P S + + C C+A S + +H+
Sbjct: 150 MSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHV 200
Score = 30.6 bits (68), Expect = 2.9
Identities = 4/68 (5%), Positives = 14/68 (20%), Gaps = 1/68 (1%)
Query: 370 HHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKH 429
++ ++ + C +C+ + ++ H
Sbjct: 140 DNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAH 199
Query: 430 KRFVHTDE 437
H
Sbjct: 200 VA-SHGLH 206
Score = 30.2 bits (67), Expect = 3.6
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 4/39 (10%)
Query: 602 TTSGTRRFQLCACTDCGRMFYNNGALGIHRRAVHSQENT 640
T S +Q C C + ++ L H H
Sbjct: 174 TASSGHGYQ---CHVCSAVLFSPLDLDAHVA-SHGLHGN 208
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 38.2 bits (88), Expect = 0.001
Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 4/79 (5%)
Query: 280 DTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLC---CDMCGKAFSCQ 336
H+ + E C+ C Q + F H+ S H + C C
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 337 TNLAAH-KKTHSGDKPYVC 354
L+ H K H G++ +
Sbjct: 64 DALSEHNLKYHPGEENFKL 82
Score = 34.4 bits (78), Expect = 0.030
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 4/78 (5%)
Query: 51 SLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIK---DHSCDVCGKVFSCPT 107
++ + E + C+ C Q + H + H + + C C +
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 108 NLTVH-KRVHTGEKPFVC 124
L+ H + H GE+ F
Sbjct: 65 ALSEHNLKYHPGEENFKL 82
Score = 33.6 bits (76), Expect = 0.054
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 342 HKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKR-LFQCSQCPKKFYRNSKLNA 400
+++ + Y C+ C +H D+ H V + C +C R L+
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 401 H-LKIHTEER 409
H LK H E
Sbjct: 69 HNLKYHPGEE 78
Score = 33.2 bits (75), Expect = 0.068
Identities = 14/71 (19%), Positives = 20/71 (28%), Gaps = 3/71 (4%)
Query: 168 SHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSETR---PYQCNLCNASFKRPGHLK 224
+ + YEC C H H Y C CN KR L
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS 67
Query: 225 QHGKTHNTENK 235
+H ++ +
Sbjct: 68 EHNLKYHPGEE 78
Score = 33.2 bits (75), Expect = 0.076
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 135 SSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLKT-HSDLR---PYECDICNASFKT 190
H + + + YEC +C + + T H+ + H ++ Y C CN K
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 191 NYERKKHRIYVHSETRPYQCNL 212
+H + H ++ +
Sbjct: 63 YDALSEHNLKYHPGEENFKLTM 84
Score = 32.1 bits (72), Expect = 0.18
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 3/66 (4%)
Query: 401 HLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDER---PHACQYCSATFKKSDHLKR 457
+ + E C C N H H + + C C+ K+ D L
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 458 HSKTAH 463
H+ H
Sbjct: 69 HNLKYH 74
Score = 29.4 bits (65), Expect = 1.8
Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 4/86 (4%)
Query: 559 AMQSHLKKVHNFSNPNRFDCCFCSEIFNLKKDYHEHLKKEHGQTTSGTRRFQLCACTDCG 618
A H N ++C +C+ + H+ EH C +C
Sbjct: 2 AHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEH----PNVVLNSSYVCVECN 57
Query: 619 RMFYNNGALGIHRRAVHSQENTYQCD 644
+ AL H H E ++
Sbjct: 58 FLTKRYDALSEHNLKYHPGEENFKLT 83
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 35.0 bits (81), Expect = 0.003
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 438 RPHACQYCSATFKKSDHLKRHSKTAHKE 465
R C+ C+ F + +HLKRH ++ E
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 35.0 bits (81), Expect = 0.003
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 206 RPYQCNLCNASFKRPGHLKQHGKTHNTE 233
R + C +C +F R HLK+H ++H E
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 30.7 bits (70), Expect = 0.089
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEK 120
+ C+VC + F+ +L H R HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 30.4 bits (69), Expect = 0.13
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
R +C++C F + L +H HT E+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 29.2 bits (66), Expect = 0.31
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEK 293
+ C +C R++ L+ H + HT EK
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 29.2 bits (66), Expect = 0.37
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 381 RLFQCSQCPKKFYRNSKLNAHLKIHTEER 409
R F C C + F R L H + HT E+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 28.4 bits (64), Expect = 0.57
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 120 KPFVCESCGKSFSQHSSLFIHKMIHTQ 146
+ FVCE C ++F++ L H HT
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTN 27
Score = 26.1 bits (58), Expect = 4.3
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 322 KDLCCDMCGKAFSCQTNLAAHKKTHSGDK 350
+ C++C +AF+ Q +L H ++H+ +K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 25.7 bits (57), Expect = 5.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 350 KPYVCETCGKSFAQNASLKYHHDT 373
+ +VCE C ++FA+ LK H+ +
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS 24
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 34.3 bits (79), Expect = 0.007
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 90 KIKDHSCDV--CGKVFSCPTNLTVHKRVHTGEK 120
K K H C + CGKV+ ++L H R HTGE+
Sbjct: 5 KKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 32.7 bits (75), Expect = 0.025
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 822 PEVRPHMCDL--CGARFKKSSALLQHRPIHTGER 853
+ + H+C + CG + K+S L H HTGER
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 30.0 bits (68), Expect = 0.24
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 437 ERPHACQY--CSATFKKSDHLKRHSKT 461
++ H C C + K+ HL+ H +
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRW 32
Score = 29.6 bits (67), Expect = 0.32
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 379 KKRLFQCS--QCPKKFYRNSKLNAHLKIHTEER 409
KK+ C C K + + S L AHL+ HT ER
Sbjct: 5 KKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 27.3 bits (61), Expect = 2.3
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 329 CGKAFSCQTNLAAHKKTHSGDK 350
CGK + ++L AH + H+G++
Sbjct: 16 CGKVYGKTSHLRAHLRWHTGER 37
Score = 26.9 bits (60), Expect = 2.4
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 203 SETRPYQCNL--CNASFKRPGHLKQHGKTHNTE 233
+ + + C++ C + + HL+ H + H E
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE 36
Score = 26.9 bits (60), Expect = 2.7
Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 143 IHTQRQYRYECSH--CQKKFFRNSKLTSHLKTHS 174
+ ++ ++ C C K + + S L +HL+ H+
Sbjct: 1 MDPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHT 34
Score = 26.2 bits (58), Expect = 5.5
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 117 TGEKPFVC--ESCGKSFSQHSSLFIHKMIHT 145
+K +C + CGK + + S L H HT
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHT 34
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 34.1 bits (78), Expect = 0.008
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 149 YRYECSHCQKKFFRNSKLTSHLKTHSDLRP 178
Y++ C C K+F R+ L+ H+ H L
Sbjct: 1 YKFACPECPKRFMRSDHLSKHITLHELLGE 30
Score = 28.3 bits (63), Expect = 0.74
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 383 FQCSQCPKKFYRNSKLNAHLKIHTEER 409
F C +CPK+F R+ L+ H+ +H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLG 29
Score = 28.0 bits (62), Expect = 0.96
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 208 YQCNLCNASFKRPGHLKQHGKTHNTENK 235
+ C C F R HL +H H +
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGE 30
Score = 25.6 bits (56), Expect = 7.5
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 441 ACQYCSATFKKSDHLKRHSKT 461
AC C F +SDHL +H
Sbjct: 4 ACPECPKRFMRSDHLSKHITL 24
Score = 25.3 bits (55), Expect = 9.2
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 266 RYQCPMCQIVLKRKDTLRHHLKLHTGEK 293
++ CP C R D L H+ LH
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHELLG 29
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 34.1 bits (77), Expect = 0.009
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 434 HTDERPHACQYCSATFKKSDHLKRHSKTAHKEMYQS 469
+ E+P++C C FK+ D + H ++ + +S
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKS 40
Score = 34.1 bits (77), Expect = 0.009
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 202 HSETRPYQCNLCNASFKRPGHLKQHGKTHN 231
S +PY C +C FKR + H ++H+
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
Score = 29.5 bits (65), Expect = 0.44
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTG 291
Y CP+C + KRKD + +H++ H G
Sbjct: 11 YSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 28.7 bits (63), Expect = 0.79
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 346 HSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKK 380
SG+KPY C CG F + + YH + V K
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 39
Score = 27.2 bits (59), Expect = 2.8
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 151 YECSHCQKKFFRNSKLTSHLKTHS 174
Y C C +F R +++ H+++H
Sbjct: 11 YSCPVCGLRFKRKDRMSYHVRSHD 34
Score = 27.2 bits (59), Expect = 3.1
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICP 857
+P+ C +CG RFK+ + H H G
Sbjct: 9 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSG 41
Score = 26.4 bits (57), Expect = 5.9
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 116 HTGEKPFVCESCGKSFSQHSSLFIHKMIH 144
+GEKP+ C CG F + + H H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 26.4 bits (57), Expect = 5.9
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 765 DEPPFACPQCGKLYNKKSSLYMHLSTKHG 793
E P++CP CG + +K + H+ + G
Sbjct: 7 GEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 33.3 bits (76), Expect = 0.014
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 149 YRYECSHCQKKFFRNSKLTSHLKTHSDLR 177
Y++ C C K+F R+ LT H+ H + +
Sbjct: 1 YKFACPECPKRFMRSDHLTLHILLHENKK 29
Score = 29.1 bits (65), Expect = 0.42
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 383 FQCSQCPKKFYRNSKLNAHLKIHTEER 409
F C +CPK+F R+ L H+ +H ++
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
Score = 26.4 bits (58), Expect = 3.2
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 208 YQCNLCNASFKRPGHLKQHGKTHNTE 233
+ C C F R HL H H +
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENK 28
Score = 26.0 bits (57), Expect = 5.3
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 266 RYQCPMCQIVLKRKDTLRHHLKLHTGEK 293
++ CP C R D L H+ LH +K
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENKK 29
Score = 25.6 bits (56), Expect = 7.6
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 441 ACQYCSATFKKSDHLKRHSKT 461
AC C F +SDHL H
Sbjct: 4 ACPECPKRFMRSDHLTLHILL 24
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 33.0 bits (76), Expect = 0.016
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 825 RPHMCD--LCGARFKKSSALLQHRPIHTGER 853
RP MC CG RF +S L +H+ HTGE+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 32.2 bits (74), Expect = 0.029
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 92 KDHSCDV--CGKVFSCPTNLTVHKRVHTGEK 120
+ C CGK F+ L HKR HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 30.3 bits (69), Expect = 0.14
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 120 KPFVC--ESCGKSFSQHSSLFIHKMIHT 145
+PF+C CGK F++ L HK HT
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHT 28
Score = 29.5 bits (67), Expect = 0.31
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 438 RPHACQY--CSATFKKSDHLKRHSKT 461
RP C + C F +SD L+RH +T
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRT 26
Score = 28.0 bits (63), Expect = 0.90
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 383 FQCS--QCPKKFYRNSKLNAHLKIHTEER 409
F C+ C K+F R+ +L H + HT E+
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 28.0 bits (63), Expect = 0.92
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 206 RPYQCN--LCNASFKRPGHLKQHGKTH 230
RP+ C C F R L++H +TH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 27.2 bits (61), Expect = 1.7
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 151 YECSH--CQKKFFRNSKLTSHLKTHS 174
+ C+ C K+F R+ +L H +TH+
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHT 28
Score = 26.8 bits (60), Expect = 2.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 329 CGKAFSCQTNLAAHKKTHSGDK 350
CGK F+ L HK+TH+G+K
Sbjct: 10 CGKRFTRSDELQRHKRTHTGEK 31
Score = 26.0 bits (58), Expect = 4.3
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 267 YQCPM--CQIVLKRKDTLRHHLKLHTGEK 293
+ C C R D L+ H + HTGEK
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 37.1 bits (85), Expect = 0.016
Identities = 10/53 (18%), Positives = 17/53 (32%)
Query: 96 CDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQ 148
+ K + T+H+ + GEK E + L + RQ
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 31.7 bits (71), Expect = 0.94
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 635 HSQENTYQCDPCGKVFPSKKYMREHIKRIHINQGR 669
E Q + +V + + +R I + QG+
Sbjct: 203 ARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQGK 237
Score = 30.6 bits (68), Expect = 2.1
Identities = 10/55 (18%), Positives = 17/55 (30%)
Query: 36 VPYVLPHSRQHLSKYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLK 90
V Y + ++ S H + EK E+ + LR L+
Sbjct: 180 VWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLR 234
Score = 29.8 bits (66), Expect = 3.4
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 3/63 (4%)
Query: 113 KRVHTGEKPFV--CESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHL 170
+ + GE V E K S IH+ + + R + ++ L +
Sbjct: 170 RDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEK-RLQREKSEQVLDNPEDLRGPI 228
Query: 171 KTH 173
Sbjct: 229 HLS 231
Score = 29.8 bits (66), Expect = 3.6
Identities = 6/45 (13%), Positives = 12/45 (26%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYH 370
+ K + H+ G+K E + L+
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGP 227
Score = 29.4 bits (65), Expect = 4.8
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Query: 57 RIHTKEKLFI--CEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKR 114
I E L + E+ K+ + S H+ + K + +V P +L
Sbjct: 171 DIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGE-KRLQREKSEQVLDNPEDLRGPIH 229
Query: 115 VHTGEK 120
+ +
Sbjct: 230 LSVLRQ 235
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 32.9 bits (74), Expect = 0.024
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 117 TGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
+ EK C CG+ F Q+ SL H+++H
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHM 36
Score = 31.3 bits (70), Expect = 0.10
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGERHICPVCG 860
+ H C CG F + +L++H+ +H G+++ P G
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG 46
Score = 28.6 bits (63), Expect = 0.77
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEK 120
K H C CG++F +L H+ +H G+K
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 26.3 bits (57), Expect = 6.7
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 60 TKEKLFICEECGKQFVTSSALRRHK 84
++EK C ECG+ F +L H+
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQ 32
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 37.5 bits (86), Expect = 0.025
Identities = 10/47 (21%), Positives = 19/47 (40%)
Query: 834 ARFKKSSALLQHRPIHTGERHICPVCGRGFTQRGAMKKHVSTLHHLV 880
A ++ PI ++C VC F+ A+ +H+ + H
Sbjct: 97 AAVVSDPQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRSDHRDD 143
Score = 32.5 bits (73), Expect = 0.89
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 637 QENTYQCDPCGKVFPSKKYMREHIKRIH 664
++Y C+ C F + + EH++ H
Sbjct: 113 NPSSYVCNVCNARFSTMSALSEHLRSDH 140
Score = 31.3 bits (70), Expect = 1.7
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 516 SSTCAQQDPEPLQSASIEVITPNADPSQNLFCIKCNASFTSSPAMQSHLKKVH 568
+ A + + +TP +PS + C CNA F++ A+ HL+ H
Sbjct: 89 AVANATKPAAVVSDPQSMKVTPIVNPSSYV-CNVCNARFSTMSALSEHLRSDH 140
Score = 31.3 bits (70), Expect = 2.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 65 FICEECGKQFVTSSALRRHKKAVH 88
++C C +F T SAL H ++ H
Sbjct: 117 YVCNVCNARFSTMSALSEHLRSDH 140
Score = 31.3 bits (70), Expect = 2.0
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKR 114
+ C+VC FS + L+ H R
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLR 137
Score = 30.6 bits (68), Expect = 3.3
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 614 CTDCGRMFYNNGALGIHRRAVHS 636
C C F AL H R+ H
Sbjct: 119 CNVCNARFSTMSALSEHLRSDHR 141
Score = 30.2 bits (67), Expect = 4.0
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 440 HACQYCSATFKKSDHLKRHSKTAHK 464
+ C C+A F L H ++ H+
Sbjct: 117 YVCNVCNARFSTMSALSEHLRSDHR 141
Score = 30.2 bits (67), Expect = 4.1
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 350 KPYVCETCGKSFAQNASLKYHHDTVHALV 378
YVC C F+ ++L H + H
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRSDHRDD 143
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 34.2 bits (77), Expect = 0.032
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 266 RYQCPMCQIVLKR--KDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVH 318
CP C +V ++ +H + + C+ C KQ H + H
Sbjct: 24 EAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH 78
Score = 33.0 bits (74), Expect = 0.086
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 413 CDICNH-SFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHLKRHSKTAH 463
C CN + KT +KKH + CQ+C FK L H+ H
Sbjct: 27 CPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH 78
Score = 29.1 bits (64), Expect = 1.8
Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 350 KPYVCETCGKSFAQN-ASLKYHHDTVHALVKKRLFQCSQCPKKFYRNSKLNAHLK 403
VC TC + LK H + L +C C K+F + LN H
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDA--LKCQHCRKQFKSKAGLNYHTM 75
Score = 29.1 bits (64), Expect = 1.9
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 51 SLKNHVRI-HTKEKLFICEECGKQFVTSSALRRHKKAVH 88
LK H+ + + C+ C KQF + + L H A H
Sbjct: 40 GLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH 78
Score = 29.1 bits (64), Expect = 2.2
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 613 ACTDCGRMFYNN-GALGIHRRAVHSQENTYQCDPCGKVFPSKKYMREHIKRIHINQ 667
C C + L H ++ +C C K F SK + H H +
Sbjct: 26 VCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
Score = 28.0 bits (61), Expect = 4.2
Identities = 14/49 (28%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 179 YECDICNA-SFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHLKQH 226
C CN + KT KKH +C C FK L H
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYH 73
Score = 28.0 bits (61), Expect = 4.8
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 765 DEPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPT 799
+ C C K + K+ L H +H +
Sbjct: 51 LQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDA 85
Score = 27.6 bits (60), Expect = 7.1
Identities = 13/57 (22%), Positives = 17/57 (29%), Gaps = 2/57 (3%)
Query: 322 KDLCCDMCGKAF-SCQTNLAAHKKT-HSGDKPYVCETCGKSFAQNASLKYHHDTVHA 376
+ C C L H + C+ C K F A L YH H+
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Score = 27.6 bits (60), Expect = 7.6
Identities = 13/60 (21%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Query: 293 KFVTCEQCGKQLHG-VYAFKRHLKSVHLKIKDLCCDMCGKAFSCQTNLAAHKKTHSGDKP 351
C C + K+H++ L C C K F + L H KP
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 32.0 bits (72), Expect = 0.035
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 91 IKDHSCDVCGKVFSCPTNLTVHKRVHTGEK 120
+K + C C + F+ P L H R+HTGEK
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 29.3 bits (65), Expect = 0.35
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 824 VRPHMCDLCGARFKKSSALLQHRPIHTGER 853
++P++C C +F AL +H IHTGE+
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 29.0 bits (64), Expect = 0.51
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 206 RPYQCNLCNASFKRPGHLKQHGKTHNTE 233
+PY C C F PG L++H + H E
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGE 29
Score = 27.4 bits (60), Expect = 1.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 120 KPFVCESCGKSFSQHSSLFIHKMIHT 145
KP+VC C + F+ +L H IHT
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHT 27
Score = 26.6 bits (58), Expect = 3.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 151 YECSHCQKKFFRNSKLTSHLKTHS 174
Y C HCQ++F L H++ H+
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHT 27
Score = 26.3 bits (57), Expect = 3.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 264 MVRYQCPMCQIVLKRKDTLRHHLKLHTGEK 293
M Y C CQ L+ H+++HTGEK
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 33.7 bits (76), Expect = 0.044
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 266 RYQCPMCQIVLKRK-DTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVH 318
CP CQ V ++ + L+ H++ E F TC CGKQL + K H+ + H
Sbjct: 34 SVSCPTCQAVGRKTIEGLKKHMENCKQEMF-TCHHCGKQLRSLAGMKYHVMANH 86
Score = 30.6 bits (68), Expect = 0.57
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 51 SLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVH 88
LK H+ +E F C CGKQ + + ++ H A H
Sbjct: 50 GLKKHMENCKQEM-FTCHHCGKQLRSLAGMKYHVMANH 86
Score = 28.3 bits (62), Expect = 3.5
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 829 CDLCGARFKKS-SALLQHRPIHTGERHICPVCGRGFTQRGAMKKHVSTLH 877
C C A +K+ L +H E C CG+ MK HV H
Sbjct: 37 CPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANH 86
Score = 28.3 bits (62), Expect = 3.6
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 413 CDICNH-SFKTDNEVKKHKRFVHTDERPHACQYCSATFKKSDHLKRHSKTAH 463
C C KT +KKH + + C +C + +K H H
Sbjct: 37 CPTCQAVGRKTIEGLKKHME--NCKQEMFTCHHCGKQLRSLAGMKYHVMANH 86
Score = 27.5 bits (60), Expect = 6.5
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 766 EPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEP 798
+ F C CGK + + H+ H
Sbjct: 60 QEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSG 92
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 31.8 bits (71), Expect = 0.066
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 826 PHMCDLCGARFKKSSALLQHRPIHTGE 852
C CG F+ SS L++H+ +H GE
Sbjct: 12 TSECQECGKIFRHSSLLIEHQALHAGE 38
Score = 29.9 bits (66), Expect = 0.33
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 96 CDVCGKVFSCPTNLTVHKRVHTGE 119
C CGK+F + L H+ +H GE
Sbjct: 15 CQECGKIFRHSSLLIEHQALHAGE 38
Score = 28.7 bits (63), Expect = 0.76
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 118 GEKPFVCESCGKSFSQHSSLFIHKMIHT 145
+ C+ CGK F S L H+ +H
Sbjct: 9 AKTTSECQECGKIFRHSSLLIEHQALHA 36
Score = 27.6 bits (60), Expect = 1.9
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGD 349
C CGK F + L H+ H+G+
Sbjct: 15 CQECGKIFRHSSLLIEHQALHAGE 38
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 31.3 bits (70), Expect = 0.079
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGE 852
+ H+CD+CG +FK L H+ +HT +
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 27.9 bits (61), Expect = 1.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGE 119
K H CD+CGK F L HK +HT +
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 27.5 bits (60), Expect = 1.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGD 349
CDMCGK F + L +HK H+ D
Sbjct: 12 CDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 25.9 bits (56), Expect = 6.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 849 HTGERHICPVCGRGFTQRGAMKKH 872
+G+ H+C +CG+ F +G +K H
Sbjct: 5 SSGKTHLCDMCGKKFKSKGTLKSH 28
Score = 25.6 bits (55), Expect = 7.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 119 EKPFVCESCGKSFSQHSSLFIHKMIHT 145
K +C+ CGK F +L HK++HT
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLHT 33
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 31.7 bits (71), Expect = 0.079
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 86 AVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHT 117
+ K K C+ C K FSC LT H+R+HT
Sbjct: 5 SSGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 30.6 bits (68), Expect = 0.18
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 116 HTGEKPFVCESCGKSFSQHSSLFIHKMIHTQ 146
EK F C C K+FS L H+ IHT+
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHTR 37
Score = 27.9 bits (61), Expect = 1.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 316 SVHLKIKDLCCDMCGKAFSCQTNLAAHKKTHS 347
S K K C+ C K FSC L H++ H+
Sbjct: 5 SSGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 27.5 bits (60), Expect = 2.2
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 633 AVHSQENTYQCDPCGKVFPSKKYMREHIKRIH 664
+ +E ++C+ C K F KY+ +H +RIH
Sbjct: 5 SSGQKEKCFKCNKCEKTFSCSKYLTQH-ERIH 35
Score = 26.3 bits (57), Expect = 6.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 59 HTKEKLFICEECGKQFVTSSALRRHKK 85
KEK F C +C K F S L +H++
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHER 33
Score = 25.9 bits (56), Expect = 7.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 378 VKKRLFQCSQCPKKFYRNSKLNAHLKIHT 406
K++ F+C++C K F + L H +IHT
Sbjct: 8 QKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 31.3 bits (70), Expect = 0.11
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 349 DKPYVCETCGKSFAQNASLKYHHDTVH 375
DKPY C+ CGK + L YH+ H
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYAHSH 31
Score = 26.7 bits (58), Expect = 5.4
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 765 DEPPFACPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCE 802
+ P+AC CGK Y + L H + H E E
Sbjct: 4 RDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEGEDKE 41
Score = 26.3 bits (57), Expect = 6.9
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 436 DERPHACQYCSATFKKSDHLKRHSKTAHKEMYQSEDIDQQT 476
++P+AC C +K L H +H + ED +
Sbjct: 4 RDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEGEDKEDSQ 44
Score = 25.9 bits (56), Expect = 7.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 825 RPHMCDLCGARFKKSSALLQHR 846
+P+ CD+CG R+K L H
Sbjct: 6 KPYACDICGKRYKNRPGLSYHY 27
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 30.6 bits (68), Expect = 0.15
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 261 GVDMVRYQCPMCQIVLKRKDTLRHHLKLHTGEK 293
G + C C V K K +L+ HL++HT EK
Sbjct: 4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 28.3 bits (62), Expect = 0.82
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 91 IKDHSCDVCGKVFSCPTNLTVHKRVHTGEK 120
K +C+ C KVF +L H R+HT EK
Sbjct: 7 GKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 28.3 bits (62), Expect = 1.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 381 RLFQCSQCPKKFYRNSKLNAHLKIHTEER 409
++F C C K F L AHL+IHT E+
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 25.6 bits (55), Expect = 9.1
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 120 KPFVCESCGKSFSQHSSLFIHKMIHTQRQ 148
K F CE C K F SL H IHT +
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
e.59.1.1
Length = 309
Score = 34.4 bits (78), Expect = 0.15
Identities = 25/168 (14%), Positives = 43/168 (25%), Gaps = 22/168 (13%)
Query: 41 PHSRQHLSKYSLKNHVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCG 100
R+ + L + + + + L + AV C CG
Sbjct: 130 EGQRKAWAIALLSGQFDLLPAALVPFLGAALQVAWSHWLLGLEEGAVVETESRTLCPACG 189
Query: 101 KVFSCPTNLTVHKR-VHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHC--- 156
S P + + TG + C C R +CSHC
Sbjct: 190 ---SPPMAGMIRQGGKETGLRYLSCSLCA---------------CEWHYVRIKCSHCEES 231
Query: 157 QKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSE 204
+ + + + + LR C C K Y ++
Sbjct: 232 KHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLKQFYLEFDRHADALAD 279
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 34.6 bits (79), Expect = 0.16
Identities = 39/293 (13%), Positives = 70/293 (23%), Gaps = 27/293 (9%)
Query: 260 WGVDMVRYQCPMCQIVLKRKDTLRHHLKLHTGEKFVT-CEQCGKQLHGVYAFKRHLKSVH 318
WG +QC +C V+ H + H E C K +H +H
Sbjct: 59 WGFGKQGFQCQVCSFVV--------HKRCH--EFVTFSCPGADKGPASDDPRSKHKFKIH 108
Query: 319 LKIKDLCCDMCG--------KAFSCQ-TNLAAHKKTHSGDKPYVCETCGKSFAQNASLKY 369
CD CG + C + HK+ V CG + Y
Sbjct: 109 TYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVM----NVPSLCGTDHTERRGRIY 164
Query: 370 HHDTVHALVKKRLFQCSQ--CPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVK 427
+ V + + ++ P S LK+ + ++ + N
Sbjct: 165 IQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEW 224
Query: 428 KHKRFVHTDERPHACQYCSATFKKSDHLKRHSKTAHKEMYQSEDIDQQTILLDPRTYVHP 487
F + + S D R+ SE
Sbjct: 225 NET-FRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQEE 283
Query: 488 YVPYQGDPHDLKKISISRVHTRKKELLVSSTCAQQDPEPLQSASIEVITPNAD 540
+ + + + + + + + S N D
Sbjct: 284 GEYFNVPVPPEGSEGNEELRQKFERAKIGQGTKAPEEKTANTISKFDNNGNRD 336
Score = 28.8 bits (64), Expect = 9.0
Identities = 26/155 (16%), Positives = 38/155 (24%), Gaps = 14/155 (9%)
Query: 55 HVRIHTKEKLFICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCG--------KVFSCP 106
H R H + F C K + +HK +H CD CG + C
Sbjct: 76 HKRCH-EFVTFSCPGADKGPASDDPRSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCD 134
Query: 107 -TNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSK 165
+ VHKR V CG ++ + + + +
Sbjct: 135 TCMMNVHKRCVM----NVPSLCGTDHTERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPN 190
Query: 166 LTSHLKTHSDLRPYECDICNASFKTNYERKKHRIY 200
S L P KT
Sbjct: 191 GLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWN 225
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.37.1.5
Length = 121
Score = 32.3 bits (73), Expect = 0.25
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 540 DPSQNLFCIKCNASFTSSPAMQSHLKKVHNFSNPNRFDCCFCSEIFNLKKDYHEHLK 596
Q+ C+ C+ F S+ SH K H F+ S + +++ ++K
Sbjct: 11 HGRQHTPCLFCDRLFASAEETFSHCKLEHQFN--------IDSMVHKHGLEFYGYIK 59
Score = 30.7 bits (69), Expect = 0.64
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 573 PNRFDCCFCSEIFNLKKDYHEHLKKEHG 600
C FC +F ++ H K EH
Sbjct: 13 RQHTPCLFCDRLFASAEETFSHCKLEHQ 40
Score = 29.9 bits (67), Expect = 1.6
Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 11/75 (14%)
Query: 204 ETRPYQCNLCNASFKRPGHLKQHGKTHNTENKGLLEEHVFSC-KAKRKENLDSYQITWGV 262
+ C C+ F H EH F+ K L+ Y +
Sbjct: 12 GRQHTPCLFCDRLFASAEETFSH----------CKLEHQFNIDSMVHKHGLEFYGYIKLI 61
Query: 263 DMVRYQCPMCQIVLK 277
+ +R + P + +
Sbjct: 62 NFIRLKNPTVEYMNS 76
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 33.1 bits (75), Expect = 0.25
Identities = 9/33 (27%), Positives = 11/33 (33%), Gaps = 7/33 (21%)
Query: 96 CDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCG 128
C C P + R G+ VC CG
Sbjct: 24 CPECK---VYPPKIVE--RFSEGD--VVCALCG 49
Score = 31.9 bits (72), Expect = 0.55
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 14/55 (25%)
Query: 771 CPQCGKLYNKKSSLYMHLSTKHGKRSEPTVCEACGKHVINIRNHMRQVHLYPEVR 825
CP+C K + G + VC CG V++ + V E R
Sbjct: 24 CPECKVYPPK-----IVERFSEG---D-VVCALCG-LVLS----DKLVDTRSEWR 64
Score = 29.6 bits (66), Expect = 2.9
Identities = 13/60 (21%), Positives = 18/60 (30%), Gaps = 27/60 (45%)
Query: 247 AKRKENLDSYQITWGVDMVRYQCPMC-----QIVLKRKDTLRHHLKLHTGEKFVTCEQCG 301
+R NL+ CP C +IV + G+ V C CG
Sbjct: 12 GRRGPNLNIVLT----------CPECKVYPPKIV---ERF-------SEGD--VVCALCG 49
Score = 29.2 bits (65), Expect = 4.1
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 8/37 (21%)
Query: 66 ICEECGKQFVTSSALRRHKKAVHLKIKDHSCDVCGKV 102
C EC + R + D C +CG V
Sbjct: 23 TCPECKV--YPPKIVERFSEG------DVVCALCGLV 51
Score = 28.9 bits (64), Expect = 5.3
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 7/35 (20%)
Query: 324 LCCDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCG 358
L C C + ++ GD VC CG
Sbjct: 22 LTCPECK---VYPPKIV--ERFSEGD--VVCALCG 49
>3ov0_A Cytochrome C family protein; multiheme cytochrome C, electron
transfer, Fe reduction, GEO sulfurreducens; HET: HEM;
3.20A {Geobacter sulfurreducens}
Length = 318
Score = 33.5 bits (74), Expect = 0.29
Identities = 35/300 (11%), Positives = 68/300 (22%), Gaps = 21/300 (7%)
Query: 86 AVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
+HLK +++C +C + + EK C +C H+ + +
Sbjct: 21 DIHLKKYNNNCRICHIALFDLRKPKRY-TMLDMEKGKSCGAC------HTGMKAFSVADD 73
Query: 146 QRQYRYECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSET 205
+ R + +R + +H P C + +
Sbjct: 74 SQCVRCHSGSARPVAYRMKGAGEAVFSHEVHVPMLEGKCRTCHSNREITGGRNVTMAQME 133
Query: 206 RPYQCNLCNASFKRPGHLKQHGKTHNTENKGLLEEHVFSCKAKRKENLDSYQITWGVDMV 265
+ C C+ GK H A + + +
Sbjct: 134 KGKSCGACHNDKMAFTVAGNCGKCHKGMTPPKTVNFKMKGVADAAFSHEFHLGM------ 187
Query: 266 RYQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHGVYAFKRHLKSVHLKIKDLC 325
Y+C C L + +K +C C ++ H +K
Sbjct: 188 -YKCNECHTKLFAYKAGAKRFTMADMDKGKSCGACHNG-KDAFSSASDCGKCHPGLKPAK 245
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDKPYVCETCGKSFAQNASLKYHHDTVHALVKKRLFQC 385
+ H + C C + K C
Sbjct: 246 LTYKTSVGEAYFDHDIHLSM------FKCADCHTKVFKYRKGSAPATMADMEKGKSCGVC 299
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 31.9 bits (71), Expect = 0.30
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 504 SRVHTRKKELLVSSTCAQQDPEPLQSASIEVITPNADPSQNLFCIKCNASFTSSPAMQSH 563
SR H K ++ + P + + ++ C CN +F+S +SH
Sbjct: 54 SRKHANKVRRYMAINQGED-SVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVVAESH 112
Query: 564 LK-KVH 568
K H
Sbjct: 113 YIGKTH 118
Score = 29.9 bits (66), Expect = 1.7
Identities = 11/84 (13%), Positives = 23/84 (27%), Gaps = 2/84 (2%)
Query: 206 RPYQCNLCNASFKRPGHLKQH--GKTHNTENKGLLEEHVFSCKAKRKENLDSYQITWGVD 263
QC +C+A H + H + + + + K+ + +
Sbjct: 31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGE 90
Query: 264 MVRYQCPMCQIVLKRKDTLRHHLK 287
CP+C + H
Sbjct: 91 DRSKCCPVCNMTFSSPVVAESHYI 114
Score = 29.5 bits (65), Expect = 2.1
Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 6/84 (7%)
Query: 153 CSHCQKKFFRNSKLTSHLKTHSDLR----PYECDICNASFKTNYERKKHRIYVHSETRPY 208
C C S+ +H ++ + S + E R
Sbjct: 35 CKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSK 94
Query: 209 QCNLCNASFKRPGHLKQH--GKTH 230
C +CN +F P + H GKTH
Sbjct: 95 CCPVCNMTFSSPVVAESHYIGKTH 118
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 29.7 bits (67), Expect = 0.30
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 381 RLFQCSQCPKKFYRNSKLNAHLKIHTEERA 410
R + CS C ++F L H+ +H +RA
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDRA 34
Score = 27.0 bits (60), Expect = 2.6
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
R + C C F+ + AL H +H +R
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDR 33
Score = 26.6 bits (59), Expect = 3.2
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 63 KLFICEECGKQFVTSSALRRHKKA 86
+ + C C ++F ++ AL H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNV 28
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 29.4 bits (65), Expect = 0.31
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 91 IKDHSCDVCGKVFSCPTNLTVHKRVHTG 118
++ +SC VCGK FS + H RVHTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 27.1 bits (59), Expect = 2.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 824 VRPHMCDLCGARFKKSSALLQHRPIHTG 851
+RP+ C +CG RF + H +HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 25.1 bits (54), Expect = 9.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 120 KPFVCESCGKSFSQHSSLFIHKMIHT 145
+P+ C CGK FS + H +HT
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHT 27
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex,
restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE;
1.50A {Helicobacter pylori} PDB: 3fc3_A*
Length = 200
Score = 32.2 bits (72), Expect = 0.53
Identities = 18/115 (15%), Positives = 31/115 (26%), Gaps = 7/115 (6%)
Query: 112 HKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQRQYRYECSHCQKKFFRNSKLTSHLK 171
R G +C C + ++ R C C+K ++ K
Sbjct: 66 IYRTGKGYDKKICNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNIDGVKLSSTEKK 125
Query: 172 THSDLR-----PYECDICNASFKTNYERKKHRIYVHS--ETRPYQCNLCNASFKR 219
++ + C IC + H R + C+ CN R
Sbjct: 126 KMDEIAPPKGSVFTCPICEKRSIVGVTANLVHDHNHDTGWGREWICDSCNTGLGR 180
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 28.9 bits (64), Expect = 0.56
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 149 YRYECSHCQKKFFRNSKLTSHLKT 172
Y + C C K+F R+ L+ H+KT
Sbjct: 1 YAFACPACPKRFMRSDALSKHIKT 24
Score = 28.5 bits (63), Expect = 0.76
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 383 FQCSQCPKKFYRNSKLNAHLK 403
F C CPK+F R+ L+ H+K
Sbjct: 3 FACPACPKRFMRSDALSKHIK 23
Score = 28.1 bits (62), Expect = 0.99
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 441 ACQYCSATFKKSDHLKRHSKTA 462
AC C F +SD L +H KTA
Sbjct: 4 ACPACPKRFMRSDALSKHIKTA 25
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 28.6 bits (63), Expect = 0.63
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 96 CDVCGKVFSCPTNLTVHKRVHTGEK 120
C +CGK F+ ++L H R HTGEK
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 28.6 bits (63), Expect = 0.70
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 322 KDLCCDMCGKAFSCQTNLAAHKKTHSGDK 350
K C MCGKAF+ ++L AH + H+G+K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 28.2 bits (62), Expect = 0.97
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 120 KPFVCESCGKSFSQHSSLFIHKMIHT 145
KP C CGK+F+Q SSL H HT
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHT 26
Score = 28.2 bits (62), Expect = 0.97
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 825 RPHMCDLCGARFKKSSALLQHRPIHTGER 853
+P C +CG F ++S+L+ H HTGE+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 28.1 bits (62), Expect = 0.80
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 350 KPYVCETCGKSFAQNASLKYH 370
KPYVCE CGK F Q++ L H
Sbjct: 1 KPYVCERCGKRFVQSSQLANH 21
Score = 26.2 bits (57), Expect = 3.9
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 120 KPFVCESCGKSFSQHSSLFIHKMIH 144
KP+VCE CGK F Q S L H H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
Score = 25.4 bits (55), Expect = 7.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 63 KLFICEECGKQFVTSSALRRH 83
K ++CE CGK+FV SS L H
Sbjct: 1 KPYVCERCGKRFVQSSQLANH 21
Score = 25.0 bits (54), Expect = 9.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 825 RPHMCDLCGARFKKSSALLQH 845
+P++C+ CG RF +SS L H
Sbjct: 1 KPYVCERCGKRFVQSSQLANH 21
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1
Length = 88
Score = 29.8 bits (66), Expect = 0.83
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 151 YECSHCQKKFFRNSKLTSHLKTHSD 175
Y+C HC K ++LTSHL H++
Sbjct: 26 YQCKHCDSKLQSTAELTSHLNIHNE 50
Score = 28.3 bits (62), Expect = 2.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 382 LFQCSQCPKKFYRNSKLNAHLKIHTEE 408
+QC C K ++L +HL IH EE
Sbjct: 25 TYQCKHCDSKLQSTAELTSHLNIHNEE 51
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.93
Identities = 6/33 (18%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 521 QQDPEPLQSASIEVITPNADPSQNLFCIKCNAS 553
+Q + LQ+ S+++ ++ P+ + A+
Sbjct: 19 KQALKKLQA-SLKLYADDSAPA-----LAIKAT 45
Score = 30.3 bits (67), Expect = 1.6
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 15/39 (38%)
Query: 157 QKKFFRNSKLTSHLKTHSDLRPYECD------ICNASFK 189
+K+ + KL + LK Y D I A+ +
Sbjct: 18 EKQALK--KLQASLK------LYADDSAPALAI-KATME 47
Score = 29.9 bits (66), Expect = 2.0
Identities = 6/26 (23%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 343 KKTHSGDKPYVCETCGKSFAQNASLK 368
KK + K Y ++ + A A+++
Sbjct: 23 KKLQASLKLYADDS-APALAIKATME 47
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.9 bits (61), Expect = 1.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 267 YQCPMCQIVLKRKDTLRHHLKLHTGEK 293
Y+CP C K L HL+ HTGEK
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 27.1 bits (59), Expect = 2.3
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 92 KDHSCDVCGKVFSCPTNLTVHKRVHTGEK 120
K + C C + NL VH R HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 25.6 bits (55), Expect = 9.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 326 CDMCGKAFSCQTNLAAHKKTHSGDK 350
C C A + + NL H + H+G+K
Sbjct: 12 CPQCSYASAIKANLNVHLRKHTGEK 36
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein,
C2H2 type zinc-finger, structural genomics; NMR {Mus
musculus} SCOP: g.37.1.2 g.37.1.2
Length = 79
Score = 29.1 bits (65), Expect = 1.4
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 264 MVRYQCPMCQIVLKRKDTLRHHLKLHTGEKFVTCEQCGKQLHG 306
MV + C C +K K + H+ + ++C CGK G
Sbjct: 8 MVFFTCNACGESVK-KIQVEKHVSNCRNCECLSCIDCGKDFWG 49
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 27.9 bits (62), Expect = 1.7
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 381 RLFQC--SQCPKKFYRNSKLNAHLKIHTEER 409
+ F+C C K F R + +H++ H E+R
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 27.1 bits (60), Expect = 2.7
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 150 RYECSH--CQKKFFRNSKLTSHLKTHSDLR 177
+EC C K F R + SH++TH + R
Sbjct: 18 TFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 26.7 bits (59), Expect = 4.2
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 329 CGKAFSCQTNLAAHKKTHSGDK 350
C K F + N+ +H +TH D+
Sbjct: 26 CTKTFKRRYNIRSHIQTHLEDR 47
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 27.4 bits (60), Expect = 1.9
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 116 HTGEKPFVCESCGKSFSQHSSLFIHKMIHT 145
+G++PFVC C +F+ ++ H +HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 27.4 bits (60), Expect = 2.0
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 346 HSGDKPYVCETCGKSFAQNAS----LKYHHDTV 374
SG +P+VC C +F A+ LK H DT+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL 34
Score = 26.6 bits (58), Expect = 4.1
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 173 HSDLRPYECDICNASFKTNYERKKHRIYVHSET 205
S RP+ C IC ++F T +H + VH++T
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARH-LKVHTDT 33
Score = 25.5 bits (55), Expect = 8.9
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 202 HSETRPYQCNLCNASFKRPGHLKQHGKTH 230
S RP+ C +C ++F + +H K H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 27.1 bits (59), Expect = 2.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 65 FICEECGKQFVTSSALRRHKKAVH 88
++C C K+FV+S LR H + VH
Sbjct: 8 YVCALCLKKFVSSIRLRSHIREVH 31
Score = 25.9 bits (56), Expect = 6.4
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 347 SGDKPYVCETCGKSFAQNASLKYHHDTVHA 376
SG YVC C K F + L+ H VH
Sbjct: 3 SGSSGYVCALCLKKFVSSIRLRSHIREVHG 32
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.2 bits (59), Expect = 2.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 203 SETRPYQCNLCNASFKRPGHLKQHGKTHNTE 233
S +P++C+LC + + +LK H H+TE
Sbjct: 5 SSGKPFKCSLCEYATRSKSNLKAHMNRHSTE 35
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 28.4 bits (63), Expect = 2.4
Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 4/74 (5%)
Query: 164 SKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHSETRPYQCNLCNASFKRPGHL 223
S + H +T LR C C+ + K+H + R C C + L
Sbjct: 3 SGSSGHEETECPLRLAVCQHCDLELSIL-KLKEH--EDYCGARTELCGNCGRNVLV-KDL 58
Query: 224 KQHGKTHNTENKGL 237
K H + E G
Sbjct: 59 KTHPEVCGREGSGP 72
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 3.3
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 22/83 (26%)
Query: 71 GKQFVTSSALRRH--KKAVHLKIKDHSCDVCGKVFSC-------PTNLTVH------KRV 115
G +S + +A +H D G FS P NLT+H KR+
Sbjct: 1632 GMDLYKTSKAAQDVWNRA-----DNHFKDTYG--FSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 116 HTGEKPFVCESCGKSFSQHSSLF 138
+ E+ + +F
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIF 1707
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 26.4 bits (58), Expect = 3.5
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 350 KPYVCETCGKSFAQNASLKYHHDTVHA 376
K Y C C ++F + L H +H+
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHS 27
Score = 26.4 bits (58), Expect = 4.4
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 856 CPVCGRGFTQRGAMKKHVSTLH 877
C +C R FT+R + +H +H
Sbjct: 5 CGLCNRAFTRRDLLIRHAQKIH 26
Score = 26.0 bits (57), Expect = 6.2
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 438 RPHACQYCSATFKKSDHLKRHSKTAHK 464
+ +AC C+ F + D L RH++ H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHS 27
Score = 25.6 bits (56), Expect = 8.4
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 267 YQCPMCQIVLKRKD-TLRHHLKLHTG 291
Y C +C R+D +RH K+H+G
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIHSG 28
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 26.1 bits (57), Expect = 5.0
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 119 EKPFVCE--SCGKSFSQHSSLFIHKMIHTQR 147
++P+ C+ C K+F ++ L HK H ++
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
Score = 25.7 bits (56), Expect = 6.6
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 147 RQYRYECSHCQKKFFRNSKLTSHLKTHSD 175
R Y + C K F RN L H K+H +
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
>3ax1_A Serrate RNA effector molecule; miRNA processing, protein binding;
2.74A {Arabidopsis thaliana}
Length = 358
Score = 29.2 bits (64), Expect = 6.4
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 6/66 (9%)
Query: 423 DNEVKKHKRFVHTDERPHACQYCSATFKKSDHLKRHSKTAHKEMYQSEDIDQQTI----- 477
D V+K + + + + C+ F ++ + +H K H E+ +
Sbjct: 290 DPHVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVYKHLKLKHTELVTELTTKVREELYFQN 349
Query: 478 -LLDPR 482
L
Sbjct: 350 YLEHHH 355
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal,
alternative splicing, hydrolase, phosphoprotein,
polymorphism, thiol protease; 2.40A {Homo sapiens}
Length = 323
Score = 29.4 bits (64), Expect = 6.5
Identities = 18/130 (13%), Positives = 32/130 (24%), Gaps = 3/130 (2%)
Query: 87 VHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFSQHSSLFIHKMIHTQ 146
+L + P ++ + + + SL T+
Sbjct: 134 WYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLSAEDSQSTE 193
Query: 147 RQY---RYECSHCQKKFFRNSKLTSHLKTHSDLRPYECDICNASFKTNYERKKHRIYVHS 203
+ C + K S T +LR Y KT+ + K +
Sbjct: 194 SNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTHRQFSKTNMVDLC 253
Query: 204 ETRPYQCNLC 213
P Q N
Sbjct: 254 PKVPKQDNSS 263
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 28.3 bits (63), Expect = 6.9
Identities = 11/120 (9%), Positives = 24/120 (20%), Gaps = 9/120 (7%)
Query: 65 FICEECGKQFVTSSALRRHK---KAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGEKP 121
C +C R K K C C + +
Sbjct: 34 LKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHC 93
Query: 122 FVCESCGKSFSQHSSLFIHK------MIHTQRQYRYECSHCQKKFFRNSKLTSHLKTHSD 175
F C C + + ++ + + + + + + H
Sbjct: 94 FACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGGSGGSGGSGGGTPMVAASPERHDG 153
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger,
bromodomain, H4K16 acetylation, breast C
transcription-protein binding complex; HET: ALY; 1.70A
{Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Length = 184
Score = 28.4 bits (63), Expect = 7.8
Identities = 10/75 (13%), Positives = 22/75 (29%)
Query: 381 RLFQCSQCPKKFYRNSKLNAHLKIHTEERACFCDICNHSFKTDNEVKKHKRFVHTDERPH 440
L C +CPK F+ + + + E C + + + +
Sbjct: 15 ELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDCDAPSHNSEKKKTEG 74
Query: 441 ACQYCSATFKKSDHL 455
+ +K + L
Sbjct: 75 LVKLTPIDKRKCERL 89
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA
complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA
6MA; 2.05A {Streptococcus pneumoniae}
Length = 257
Score = 28.8 bits (64), Expect = 8.0
Identities = 12/47 (25%), Positives = 15/47 (31%), Gaps = 9/47 (19%)
Query: 542 SQNLFCIKCNASFTSSPAMQSHLKKVHNFSNPNRFDCCFCSEIFNLK 588
+ +C C + L N F C CSE F LK
Sbjct: 32 YRQSYCPNCGNN---------PLNHFENNRPVADFYCNHCSEEFELK 69
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 27.7 bits (61), Expect = 8.5
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 65 FICEECGKQFVTSSALRRHKK 85
C C + F+ S+ L+ H +
Sbjct: 51 HRCLACARYFIDSTNLKTHFR 71
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_m 1ysh_D 2zkr_z
Length = 92
Score = 27.1 bits (60), Expect = 8.8
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Query: 77 SSALRRHKKAVHLKIKDHSCDVCGKVFSCPTNLTVHKRVHTGEKPFVCESCGKSFS 132
+S ++ KK + + C+ CGK KR G + C+ CGK +
Sbjct: 20 ASLRKQIKKMEVSQHSKYFCEFCGK--------FAVKRKAVG--IWGCKDCGKVKA 65
>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein,
pseudo-symmetric motifs, metal transport; 2.30A
{Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A
Length = 118
Score = 27.6 bits (62), Expect = 9.0
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 570 FSNPNRFDCCFCSEIFNLKKDYHEH 594
F+NPN D C C E F L H
Sbjct: 90 FTNPNVKDECGCGESFKLAAALDHH 114
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 25.6 bits (55), Expect = 9.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 850 TGERHICPVCGRGFTQRGAMKKHVSTLH 877
+G + CPVC + F++ +K H+ T H
Sbjct: 6 SGRSYSCPVCEKSFSEDRLIKSHIKTNH 33
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 25.6 bits (55), Expect = 9.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 208 YQCNLCNASFKRPGHLKQHGKTH 230
Y+C+ C A+F HL QH KTH
Sbjct: 13 YECSKCQATFNLRKHLIQHQKTH 35
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron
transfer, DIIR center, oxidoreductase; 1.40A
{Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1
PDB: 1yv1_A 1yux_A
Length = 202
Score = 28.2 bits (62), Expect = 9.8
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 14/63 (22%)
Query: 799 TVCEACGKHVINIRNHMRQVHLYPEVRPHMCDLCGARFKKSSALLQHRPIHTGER-HICP 857
A H + + + H+C +CG IH GE CP
Sbjct: 144 RAKLAESVHAERYLAAYNDIDAPDDDKFHLCPICGY-------------IHKGEDFEKCP 190
Query: 858 VCG 860
+C
Sbjct: 191 ICF 193
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.133 0.423
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,584,139
Number of extensions: 793452
Number of successful extensions: 7317
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5739
Number of HSP's successfully gapped: 2769
Length of query: 919
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 817
Effective length of database: 3,853,851
Effective search space: 3148596267
Effective search space used: 3148596267
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.0 bits)