Query psy3671
Match_columns 266
No_of_seqs 203 out of 654
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 22:39:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3671.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3671hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f1e_A Protein APAG; APAG prot 100.0 7.8E-40 2.7E-44 269.0 12.5 97 169-266 1-97 (127)
2 1xvs_A Protein APAG; MCSG APC2 100.0 3.3E-39 1.1E-43 264.9 11.9 95 171-266 2-96 (126)
3 1tza_A APAG protein, SOR45; st 100.0 7.3E-39 2.5E-43 265.2 11.8 94 172-266 3-96 (134)
4 1xq4_A Protein APAG; all beta 100.0 1.2E-38 4.1E-43 265.3 11.8 96 170-266 6-101 (139)
5 1vbv_A Hypothetical protein B0 99.9 6E-28 2E-32 192.4 6.8 99 13-149 3-101 (105)
6 3nrf_A APAG protein; structura 92.5 0.43 1.5E-05 37.5 7.3 75 172-248 2-78 (106)
7 3cfu_A Uncharacterized lipopro 66.0 28 0.00097 28.4 8.4 57 174-230 10-80 (159)
8 3qby_A Hepatoma-derived growth 56.1 5.6 0.00019 29.9 2.1 26 14-44 4-29 (94)
9 4fu6_A PC4 and SFRS1-interacti 55.5 5.4 0.00018 32.5 2.1 27 13-44 20-46 (153)
10 2l89_A PWWP domain-containing 49.0 8.5 0.00029 29.6 2.1 27 13-44 3-29 (108)
11 1ri0_A Hepatoma-derived growth 48.9 11 0.00036 29.2 2.7 26 13-43 17-42 (110)
12 2daq_A WHSC1L1 protein, isofor 38.6 16 0.00055 27.8 2.3 28 12-44 5-32 (110)
13 2gfu_A DNA mismatch repair pro 38.0 17 0.00058 28.8 2.4 27 13-44 20-46 (134)
14 1h3z_A Hypothetical 62.8 kDa p 36.7 16 0.00055 27.8 2.0 26 13-43 4-29 (109)
15 3llr_A DNA (cytosine-5)-methyl 34.7 20 0.00069 29.5 2.4 26 14-44 15-40 (154)
16 1khc_A DNA cytosine-5 methyltr 32.6 25 0.00084 28.6 2.6 27 13-44 9-35 (147)
17 1pjr_A PCRA; DNA repair, DNA r 27.9 13 0.00043 37.2 0.0 19 15-34 672-690 (724)
18 3pfs_A Bromodomain and PHD fin 27.6 48 0.0016 27.5 3.5 32 11-47 32-63 (158)
19 3isy_A Bsupi, intracellular pr 27.4 2.2E+02 0.0075 22.2 7.7 57 199-256 20-85 (120)
20 3exm_A Phosphatase SC4828; nuc 23.4 31 0.0011 30.4 1.7 44 3-46 13-57 (237)
No 1
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=100.00 E-value=7.8e-40 Score=268.98 Aligned_cols=97 Identities=35% Similarity=0.652 Sum_probs=91.5
Q ss_pred ceeeccCCeEEEEEeEEecCcCCCCCcceeEEEEEEEEECCcccEEEeeeeEEEEeCCCcEEEEecCCccCCCceeeCCC
Q psy3671 169 VHKETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGVVGQEPVLSKSL 248 (266)
Q Consensus 169 ~~~~tT~gI~V~V~~~y~~~~s~~~~~~y~f~Y~IrIeN~~~~~vQL~~RhW~I~d~~G~~~~V~G~GVVG~~P~L~pge 248 (266)
+++++|+||+|+|.|.|+|++|+|.+++|+|+|+|||+|+++.+|||++|||+|+|++|++++|+|+||||+||+|.||+
T Consensus 1 ~~~~~t~~I~V~V~~~y~~e~S~p~~~~y~faY~I~I~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVG~qP~L~PGe 80 (127)
T 2f1e_A 1 MQDDPRYRVEVEVSPRFLAHQSTPDEGRYAFAYSIRIQNAGAVPARLVARHWQITDGNGRTEQVDGEGVVGEQPWLRPGE 80 (127)
T ss_dssp -----CCCEEEEEEEEECSTTCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEEETTSCEEEEEESSBTTBCCEECTTC
T ss_pred CccceECCEEEEEEEEEchhhCCCcCCEEEEEEEEEEEeCCCCCEEEEeceEEEEeCCCCEEEEECCCeecCCCcCCCCC
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeeceEecCCceeC
Q psy3671 249 PAFQYSSHVSLQAPSGHM 266 (266)
Q Consensus 249 ~~F~Y~S~~~l~t~~G~M 266 (266)
+|+|+|||.|+||.|+|
T Consensus 81 -~f~YtSg~~L~tp~G~M 97 (127)
T 2f1e_A 81 -AFHYTSGVLLETEQGQM 97 (127)
T ss_dssp -EEEEEEEEEESSSCEEE
T ss_pred -ceEEeCCcCcCCCcEEE
Confidence 99999999999999998
No 2
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=100.00 E-value=3.3e-39 Score=264.86 Aligned_cols=95 Identities=31% Similarity=0.544 Sum_probs=93.4
Q ss_pred eeccCCeEEEEEeEEecCcCCCCCcceeEEEEEEEEECCcccEEEeeeeEEEEeCCCcEEEEecCCccCCCceeeCCCCc
Q psy3671 171 KETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGVVGQEPVLSKSLPA 250 (266)
Q Consensus 171 ~~tT~gI~V~V~~~y~~~~s~~~~~~y~f~Y~IrIeN~~~~~vQL~~RhW~I~d~~G~~~~V~G~GVVG~~P~L~pge~~ 250 (266)
.++|+||+|+|.|+|+|++|+|.+++|+|+|+|||+|+++.+|||++|||+|+|++|++++|+|+||||+||+|.||+ +
T Consensus 2 ~~~t~~I~V~V~~~y~~e~S~p~~~~y~faY~I~I~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVG~qP~L~PGe-~ 80 (126)
T 1xvs_A 2 DVSLPCIKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTVQLMSRRWLITDADGKQTVVEGDGVVGEQPRIKAND-E 80 (126)
T ss_dssp BCSCCCEEEEEEEEECGGGCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEEETTCCEEEEEEESBTTBCCEECTTC-E
T ss_pred CcccCCEEEEEEEEEchhcCCCcCCEEEEEEEEEEEECCCCCEEEEecEEEEEeCCCCEEEEECCceEcCCCcCCCCC-c
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred eEEeeceEecCCceeC
Q psy3671 251 FQYSSHVSLQAPSGHM 266 (266)
Q Consensus 251 F~Y~S~~~l~t~~G~M 266 (266)
|+|+|+|.|+||.|+|
T Consensus 81 f~YtSg~~L~tp~G~M 96 (126)
T 1xvs_A 81 YTYSSGTALDTPVGVM 96 (126)
T ss_dssp EEEEEEEEESSSEEEE
T ss_pred eEEeCCcCcCCCcEEE
Confidence 9999999999999998
No 3
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=100.00 E-value=7.3e-39 Score=265.23 Aligned_cols=94 Identities=36% Similarity=0.646 Sum_probs=92.7
Q ss_pred eccCCeEEEEEeEEecCcCCCCCcceeEEEEEEEEECCcccEEEeeeeEEEEeCCCcEEEEecCCccCCCceeeCCCCce
Q psy3671 172 ETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGVVGQEPVLSKSLPAF 251 (266)
Q Consensus 172 ~tT~gI~V~V~~~y~~~~s~~~~~~y~f~Y~IrIeN~~~~~vQL~~RhW~I~d~~G~~~~V~G~GVVG~~P~L~pge~~F 251 (266)
++|+||+|+|.|.|+|++|+|.+.+|+|+|+|||+|+++.+|||++|||+|+|++|++++|+|+||||+||+|.||+ +|
T Consensus 3 ~~t~~I~V~V~~~y~~e~S~p~~~~y~faY~ItI~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVGeqP~L~PGe-~F 81 (134)
T 1tza_A 3 ALDNSIRVEVKTEYIEQQSSPEDEKYLFSYTITIINLGEQAAKLETRHWIITDANGKTSEVQGAGVVGETPTIPPNT-AY 81 (134)
T ss_dssp CGGGTEEEEEEEEEEEECCBTTBCCEEEEEEEEEEECSSSCEEEEEEEEEEEETTSCEEEEEEESBTTBCCEECTTE-EE
T ss_pred CccCCEEEEEEEEEchhhCCCCCCEEEEEEEEEEEeCCCCCEEEEecEEEEEeCCCCEEEEEcCceEcCCCcCCCCC-ce
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEeeceEecCCceeC
Q psy3671 252 QYSSHVSLQAPSGHM 266 (266)
Q Consensus 252 ~Y~S~~~l~t~~G~M 266 (266)
+|+|||.|+||.|+|
T Consensus 82 ~YtSg~~L~Tp~G~M 96 (134)
T 1tza_A 82 QYTSGTVLDTPFGIM 96 (134)
T ss_dssp EEEEEEEESSSEEEE
T ss_pred EEcCCcCcCCCceEE
Confidence 999999999999998
No 4
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=100.00 E-value=1.2e-38 Score=265.33 Aligned_cols=96 Identities=33% Similarity=0.607 Sum_probs=93.5
Q ss_pred eeeccCCeEEEEEeEEecCcCCCCCcceeEEEEEEEEECCcccEEEeeeeEEEEeCCCcEEEEecCCccCCCceeeCCCC
Q psy3671 170 HKETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGRGVVGQEPVLSKSLP 249 (266)
Q Consensus 170 ~~~tT~gI~V~V~~~y~~~~s~~~~~~y~f~Y~IrIeN~~~~~vQL~~RhW~I~d~~G~~~~V~G~GVVG~~P~L~pge~ 249 (266)
..++|+||+|+|.|.|+|++|+|.+.+|+|+|+|||+|+++.+|||++|||+|+|++|++++|+|+||||+||+|.||+
T Consensus 6 ~~~tT~gI~V~V~~~y~~e~S~p~~~~y~FaY~ItI~N~~~~~vQL~sRhW~ItD~~G~~~eV~G~GVVGeqPvL~PGe- 84 (139)
T 1xq4_A 6 RPVKPYDLTVSVTPRYVPEQSDPSQQQYVFAYTVRITNTGSHPAQVISRHWIITDGEERVQEVRGLGVVGQQPLLAPGE- 84 (139)
T ss_dssp -CCCSSCEEEEEEEEECGGGCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEECTTSCEEEEEEESSSSCCCEECTTC-
T ss_pred cccccCCEEEEEEEEEchhhCCCCCCEEEEEEEEEEEeCCCCCEEEEecEEEEEeCCCCEEEEECCCeecCCCcCCCCC-
Confidence 3478899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeeceEecCCceeC
Q psy3671 250 AFQYSSHVSLQAPSGHM 266 (266)
Q Consensus 250 ~F~Y~S~~~l~t~~G~M 266 (266)
+|+|+|+|.|+||.|+|
T Consensus 85 ~F~YtSg~~L~Tp~G~M 101 (139)
T 1xq4_A 85 TFEYTSGCPLPTPIGTM 101 (139)
T ss_dssp EEEEEEEEEESSSEEEE
T ss_pred ceEEcCCcCcCCCceEE
Confidence 99999999999999998
No 5
>1vbv_A Hypothetical protein B0966; protein degradation, structural genomics, unknown function; 2.70A {Escherichia coli} SCOP: b.34.17.1
Probab=99.94 E-value=6e-28 Score=192.36 Aligned_cols=99 Identities=18% Similarity=0.296 Sum_probs=69.5
Q ss_pred CCccCCCceEEecccCcceEEEcCccceeeecCCCCCCCCCCCcCCCCCccccCCCCceEEEEeeCCCcchhccccceee
Q psy3671 13 QGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDIPNKRDKPSDVNGSVGKEVKSKTHTFYQVLIDSRDCPYIRAQTEAVT 92 (266)
Q Consensus 13 ~~ky~~GQ~f~Hr~fgYRGVIl~~w~~~~~d~d~~~~~~~~~~~~~~~~~~~~~~~q~fYqvLvD~rD~~~~~~q~~~vt 92 (266)
.+||++||+|+||+||||||| +|.|+.++++|+|+. .++.+.++|+|||||||+|++|+++ +
T Consensus 3 ~~kf~IGqvvrHr~~gyrGVI--------~d~Dp~~~~~eew~~--~~~~~~~~~~QPfYhVL~e~~~~~~-------~- 64 (105)
T 1vbv_A 3 ASKFGIGQQVRHSLLGYLGVV--------VDIDPVYSLSEPSPD--ELAVNDELRAAPWYHVVMEDDNGLP-------V- 64 (105)
T ss_dssp CCSSCTTCEEEETTTCCEEEE--------EEEECC--------------------CCCEEEEEEECSSCCE-------E-
T ss_pred cceecCCCEEEecccCCCEEE--------EeECcccCCCHHHHH--hccccCccCCCCceEEEEeCCCCce-------e-
Confidence 689999999999999999999 789999999999994 4455567899999999999999773 3
Q ss_pred eeccCCCCCccceecCceecccCCcccCCCCCCCcccchhhhhhhccCCCCCCCccc
Q psy3671 93 FLGNQNSNKSLYAIPGLDYVAHEDILPYSCSHEQPLHHELFDKFLVHMPDKDPPFVA 149 (266)
Q Consensus 93 ~l~~~~~~~~ly~i~g~DyV~~~di~py~s~~~~pi~H~l~~~ff~~~~~~~~~~v~ 149 (266)
+.||||+||+|+++ +.||.||.++++|..+.++ .+.+
T Consensus 65 ----------------~~YVaEenL~~~~s--~~~i~HP~i~~~F~~f~~~--~y~p 101 (105)
T 1vbv_A 65 ----------------HTYLAEAQLSSELQ--DEHPEQPSMDELAQTIRKQ--LQAP 101 (105)
T ss_dssp ----------------EEEEEGGGEEECCC--SCCTTCHHHHHHHHHHTTC------
T ss_pred ----------------eeEEcHHhccccCC--CCCcCCCCHHHHhHhhcCC--cccc
Confidence 23679999999998 7899999999999998865 3544
No 6
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=92.53 E-value=0.43 Score=37.47 Aligned_cols=75 Identities=13% Similarity=0.056 Sum_probs=61.2
Q ss_pred eccCCeEEEEEeEEecCcCCCCCcceeEEEEEEEEECCcccEEEeeeeEEEEeCCCcEEEEec--CCccCCCceeeCCC
Q psy3671 172 ETTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRG--RGVVGQEPVLSKSL 248 (266)
Q Consensus 172 ~tT~gI~V~V~~~y~~~~s~~~~~~y~f~Y~IrIeN~~~~~vQL~~RhW~I~d~~G~~~~V~G--~GVVG~~P~L~pge 248 (266)
+++++|.|-+.+.=.+.-|..++..|-=+|.|.+.|++...+.|-.=..+.++.+|+.--.++ +-.. .=.|.||+
T Consensus 2 ~~~d~v~V~At~k~~GS~s~~~k~~ytktFdV~vaNl~~~~idLsk~C~~a~~~~gkef~ldTVde~L~--~g~lk~g~ 78 (106)
T 3nrf_A 2 AAPDAVMVFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRLDTVDEELT--ADTLKPGA 78 (106)
T ss_dssp ---CCCEEEEEEEEEEEEEETTEEEEEEEEEEEEECCSSSCEECTTCEEEEEETTSCEEEEEEECGGGG--CSEECTTC
T ss_pred CCcCcEEEEeeccccccEEeCCeeEEEEEEEEEEecCCCCccccchhhheeeCcCCCEEEecccchhhh--hccccCCC
Confidence 467899999999999999999999999999999999999999999999999999998655554 1112 22788886
No 7
>3cfu_A Uncharacterized lipoprotein YJHA; YJHA_bacsu, SR562, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Bacillus subtilis}
Probab=66.02 E-value=28 Score=28.42 Aligned_cols=57 Identities=11% Similarity=0.034 Sum_probs=41.3
Q ss_pred cCCeEEEEEeEEecCc-----------CCC---CCcceeEEEEEEEEECCcccEEEeeeeEEEEeCCCcEE
Q psy3671 174 TENVRVTVIPFYMGCR-----------DSP---TSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLE 230 (266)
Q Consensus 174 T~gI~V~V~~~y~~~~-----------s~~---~~~~y~f~Y~IrIeN~~~~~vQL~~RhW~I~d~~G~~~ 230 (266)
..+++|+|...-.... ..| ....-+..-.|+|+|.+++++..-.=.+.+.|++|+.-
T Consensus 10 ~~~~evTVnsv~~~~~~e~~~~~~~~~~~p~~~~~G~~fviV~VTIeN~g~e~~~~s~~~F~L~d~dG~~~ 80 (159)
T 3cfu_A 10 AGHTNFTVNKVDRVQKGEYMNVGGAVNEETKTIKDDEERLIIEVTMENIGEDSISYNFIGFDLRDKNDQSV 80 (159)
T ss_dssp ETTEEEEEEEEEEECSSCBEESSCC------CBCCCSEEEEEEEEEEECSSSCEEEEGGGEEEECTTCCBC
T ss_pred ECCEEEEEEEEEEcCCCceeecccccccCccccCCCCEEEEEEEEEEECCCCceeeCcccEEEEeCCCCEE
Confidence 3678888876654321 223 34445678999999999999988777899999999754
No 8
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=56.15 E-value=5.6 Score=29.93 Aligned_cols=26 Identities=31% Similarity=0.658 Sum_probs=22.8
Q ss_pred CccCCCceEEecccCcceEEEcCccceeeec
Q psy3671 14 GKYSTGQLFLHRVFGYRGIVLFPWLARVYDR 44 (266)
Q Consensus 14 ~ky~~GQ~f~Hr~fgYRGVIl~~w~~~~~d~ 44 (266)
.+|.+|++|.-|+-||. .|||++++.
T Consensus 4 ~~f~~GdlVwaK~~g~p-----~WPa~V~~~ 29 (94)
T 3qby_A 4 HAFKPGDLVFAKMKGYP-----HWPARIDDI 29 (94)
T ss_dssp CCCCTTCEEEECCTTSC-----CEEEEECCC
T ss_pred CcCccCCEEEEecCCCC-----CCCEEEeec
Confidence 47999999999999996 799999873
No 9
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=55.54 E-value=5.4 Score=32.46 Aligned_cols=27 Identities=30% Similarity=0.645 Sum_probs=23.7
Q ss_pred CCccCCCceEEecccCcceEEEcCccceeeec
Q psy3671 13 QGKYSTGQLFLHRVFGYRGIVLFPWLARVYDR 44 (266)
Q Consensus 13 ~~ky~~GQ~f~Hr~fgYRGVIl~~w~~~~~d~ 44 (266)
..+|.+|+||.-|+-||. .|||+|++.
T Consensus 20 ~~~f~~GdlVwaK~~g~p-----~WPa~V~~~ 46 (153)
T 4fu6_A 20 TRDFKPGDLIFAKMKGYP-----HWPARVDEV 46 (153)
T ss_dssp GGGCCTTCEEEECCTTSC-----CEEEEECCC
T ss_pred ccCCCCCCEEEEeCCCCC-----CCCEEEeEc
Confidence 467999999999999996 699999873
No 10
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=49.00 E-value=8.5 Score=29.62 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=23.7
Q ss_pred CCccCCCceEEecccCcceEEEcCccceeeec
Q psy3671 13 QGKYSTGQLFLHRVFGYRGIVLFPWLARVYDR 44 (266)
Q Consensus 13 ~~ky~~GQ~f~Hr~fgYRGVIl~~w~~~~~d~ 44 (266)
...|.+|++|.-|+=||. .|||+|++.
T Consensus 3 ~~~~~~GdlVwaK~~gyP-----~WPa~V~~~ 29 (108)
T 2l89_A 3 DDRLNFGDRILVKAPGYP-----WWPALLLRR 29 (108)
T ss_dssp SCCCCTTEEEEEECSSSC-----EEEEEEEEE
T ss_pred CCcccCCCEEEEEeCCcC-----CCceEecCc
Confidence 457999999999999996 699999985
No 11
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=48.88 E-value=11 Score=29.22 Aligned_cols=26 Identities=35% Similarity=0.749 Sum_probs=23.5
Q ss_pred CCccCCCceEEecccCcceEEEcCccceeee
Q psy3671 13 QGKYSTGQLFLHRVFGYRGIVLFPWLARVYD 43 (266)
Q Consensus 13 ~~ky~~GQ~f~Hr~fgYRGVIl~~w~~~~~d 43 (266)
..+|.+|++|.=|+-||. .|||++++
T Consensus 17 ~~~~~~GdlVwaK~kGyP-----~WPa~V~~ 42 (110)
T 1ri0_A 17 QKEYKCGDLVFAKMKGYP-----HWPARIDE 42 (110)
T ss_dssp SSSCCTTCEEEEEETTEE-----EEEEEEEC
T ss_pred cCCCCCCCEEEEEeCCCC-----CCCEEEec
Confidence 568999999999999996 79999987
No 12
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=38.55 E-value=16 Score=27.78 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=24.1
Q ss_pred CCCccCCCceEEecccCcceEEEcCccceeeec
Q psy3671 12 VQGKYSTGQLFLHRVFGYRGIVLFPWLARVYDR 44 (266)
Q Consensus 12 ~~~ky~~GQ~f~Hr~fgYRGVIl~~w~~~~~d~ 44 (266)
...+|.+|++|.-|+=||. .|||+++|.
T Consensus 5 ~g~~~~~GdlVwaK~~g~p-----~WPa~V~~~ 32 (110)
T 2daq_A 5 SSGKLHYKQIVWVKLGNYR-----WWPAEICNP 32 (110)
T ss_dssp CCCSCCSSEEEEEECSSSC-----EEEEEECCT
T ss_pred CCCCCCCCCEEEEEeCCCC-----CCceeeCCh
Confidence 3457999999999999986 799999985
No 13
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=37.95 E-value=17 Score=28.79 Aligned_cols=27 Identities=30% Similarity=0.646 Sum_probs=23.9
Q ss_pred CCccCCCceEEecccCcceEEEcCccceeeec
Q psy3671 13 QGKYSTGQLFLHRVFGYRGIVLFPWLARVYDR 44 (266)
Q Consensus 13 ~~ky~~GQ~f~Hr~fgYRGVIl~~w~~~~~d~ 44 (266)
...|.+|++|.-|+-||. .|||+|++.
T Consensus 20 ~~~~~~GdlVwaK~~g~P-----~WPa~V~~~ 46 (134)
T 2gfu_A 20 SSDFSPGDLVWAKMEGYP-----WWPSLVYNH 46 (134)
T ss_dssp SCCCCTTSEEEECCTTSC-----CEEEECCCC
T ss_pred CCCCCCCCEEEEeecCCC-----CCCeeecch
Confidence 458999999999999994 899999984
No 14
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP, chromatin, beta-barrel; NMR {Schizosaccharomyces pombe} SCOP: b.34.9.2
Probab=36.70 E-value=16 Score=27.83 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=22.9
Q ss_pred CCccCCCceEEecccCcceEEEcCccceeee
Q psy3671 13 QGKYSTGQLFLHRVFGYRGIVLFPWLARVYD 43 (266)
Q Consensus 13 ~~ky~~GQ~f~Hr~fgYRGVIl~~w~~~~~d 43 (266)
...|.+|++|.-|+-||. .|||++++
T Consensus 4 ~~~~~~GdlVwaK~~gyP-----~WPa~V~~ 29 (109)
T 1h3z_A 4 RVNYKPGMRVLTKMSGFP-----WWPSMVVT 29 (109)
T ss_dssp CCCCCTTCEEEEEETTEE-----EEEEEECC
T ss_pred cccCCCCCEEEEEeCCcC-----CCCEEEcc
Confidence 457999999999999994 79999996
No 15
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=34.74 E-value=20 Score=29.51 Aligned_cols=26 Identities=19% Similarity=0.500 Sum_probs=23.3
Q ss_pred CccCCCceEEecccCcceEEEcCccceeeec
Q psy3671 14 GKYSTGQLFLHRVFGYRGIVLFPWLARVYDR 44 (266)
Q Consensus 14 ~ky~~GQ~f~Hr~fgYRGVIl~~w~~~~~d~ 44 (266)
..|.+|++|.-|+-||. .|||+|++.
T Consensus 15 ~~f~~GDLVWaKvkG~P-----wWPa~V~~~ 40 (154)
T 3llr_A 15 RGFGIGELVWGKLRGFS-----WWPGRIVSW 40 (154)
T ss_dssp CCCCTTCEEEECCTTSC-----CEEEEEECG
T ss_pred CCCccCCEEEEecCCCC-----CCCEEEecc
Confidence 46999999999999994 899999995
No 16
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=32.58 E-value=25 Score=28.60 Aligned_cols=27 Identities=22% Similarity=0.473 Sum_probs=23.5
Q ss_pred CCccCCCceEEecccCcceEEEcCccceeeec
Q psy3671 13 QGKYSTGQLFLHRVFGYRGIVLFPWLARVYDR 44 (266)
Q Consensus 13 ~~ky~~GQ~f~Hr~fgYRGVIl~~w~~~~~d~ 44 (266)
...|.+|++|.-|+-||. .|||+|++.
T Consensus 9 ~~~~~~GDlVWaKvkGyP-----wWPa~V~~~ 35 (147)
T 1khc_A 9 DKEFGIGDLVWGKIKGFS-----WWPAMVVSW 35 (147)
T ss_dssp SSSCCTTCEEEEEETTTE-----EEEEEEECG
T ss_pred CccCcCCCEEEEecCCcC-----CCCEEeccc
Confidence 457999999999999994 799999985
No 17
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=27.86 E-value=13 Score=37.20 Aligned_cols=19 Identities=32% Similarity=0.597 Sum_probs=0.0
Q ss_pred ccCCCceEEecccCcceEEE
Q psy3671 15 KYSTGQLFLHRVFGYRGIVL 34 (266)
Q Consensus 15 ky~~GQ~f~Hr~fgYRGVIl 34 (266)
.|.+|+.|.|++||. |+|+
T Consensus 672 ~~~~g~~v~h~~fg~-g~v~ 690 (724)
T 1pjr_A 672 SWKVGDRANHRKWGI-GTVV 690 (724)
T ss_dssp --------------------
T ss_pred ccccCCEeeccCCCC-ceEE
Confidence 589999999999996 9985
No 18
>3pfs_A Bromodomain and PHD finger-containing protein 3; structural genomics, structural genomics consortium, SGC, PW domain, protein binding; 1.90A {Homo sapiens} PDB: 3lyi_A*
Probab=27.56 E-value=48 Score=27.50 Aligned_cols=32 Identities=22% Similarity=0.411 Sum_probs=25.9
Q ss_pred CCCCccCCCceEEecccCcceEEEcCccceeeecCCC
Q psy3671 11 KVQGKYSTGQLFLHRVFGYRGIVLFPWLARVYDRDIP 47 (266)
Q Consensus 11 ~~~~ky~~GQ~f~Hr~fgYRGVIl~~w~~~~~d~d~~ 47 (266)
.....|.+|++|.-|.=||. .|||.++|-+-+
T Consensus 32 ~~~~~~~pgdlVWAK~~GyP-----wwPa~Iidp~~p 63 (158)
T 3pfs_A 32 EDRGDLEPLELVWAKCRGYP-----SYPALIIDPKMP 63 (158)
T ss_dssp SCCSCCCTTCEEEEECTTSC-----EEEEEEECTTSC
T ss_pred CcCCCCCCCCEEEEecCCCC-----CCCEEEcCCCCc
Confidence 33568999999999998887 688888986543
No 19
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=27.44 E-value=2.2e+02 Score=22.20 Aligned_cols=57 Identities=9% Similarity=0.171 Sum_probs=38.4
Q ss_pred EEEEEEEEECCcccEEEeee-----eEEEEeCCCcEEEEecCCccCCCc----eeeCCCCceEEeec
Q psy3671 199 WRYCIRLENLGELTVQLRER-----HWRIFSLSGTLETVRGRGVVGQEP----VLSKSLPAFQYSSH 256 (266)
Q Consensus 199 f~Y~IrIeN~~~~~vQL~~R-----hW~I~d~~G~~~~V~G~GVVG~~P----~L~pge~~F~Y~S~ 256 (266)
-.+.+++.|.++.+|.|.-+ -..+.|.+|+.----..|=--.|. .|.||+ +-.|.=-
T Consensus 20 v~~~ltv~N~s~~~v~l~f~Sgq~~Df~v~d~~G~~VwrwS~~~~FtQa~~~~tl~pGE-~~~f~~~ 85 (120)
T 3isy_A 20 IKFNMSLKNQSERAIEFQFSTGQKFELVVYDSEHKERYRYSKEKMFTQAFQNLTLESGE-TYDFSDV 85 (120)
T ss_dssp EEEEEEEEECSSSCEEEEESSSCCEEEEEECTTCCEEEETTTTCCCCCCCEEEEECTTC-EEEEEEE
T ss_pred EEEEEEEEcCCCCcEEEEeCCCCEEEEEEECCCCCEEEEccccchhhhhhceEEECCCC-EEEEEEE
Confidence 47788999999999988753 477788887533322444333332 789998 7777643
No 20
>3exm_A Phosphatase SC4828; nucleoside diphosphatase, GDP/UDP'ASE, non-HYD GDP analogue, lipocalcin fold, metalloprotein, hydrolase; HET: GP2; 1.65A {Streptomyces coelicolor A3} PDB: 3cbt_A* 3bxt_A
Probab=23.41 E-value=31 Score=30.44 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=25.5
Q ss_pred ccccccCCCCCCccCCCceEEecccCc-ceEEEcCccceeeecCC
Q psy3671 3 EIGKLDTPKVQGKYSTGQLFLHRVFGY-RGIVLFPWLARVYDRDI 46 (266)
Q Consensus 3 ~vG~l~~~~~~~ky~~GQ~f~Hr~fgY-RGVIl~~w~~~~~d~d~ 46 (266)
++|.--.+.+-+.|.+||++++|...| .|=+=..+++++...|.
T Consensus 13 ~~~~~~~~~~~~~~~pG~~v~~r~~~~~~gr~h~~~p~rvv~dd~ 57 (237)
T 3exm_A 13 GPGAEGPPGPVGHWAPGSHILWRYRENGGPHVHIARPVTVVRDDA 57 (237)
T ss_dssp -----------CCCCTTCEEEEEEECTTSSSEEEEEEEEEEEEET
T ss_pred cCCccCCCCCCCCCCCCCEEEEEEeecCCCCeeEEEeEEEEeECC
Confidence 455544455667899999999997777 56555567777777653
Done!