RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3671
         (266 letters)



>d1xvsa_ b.1.23.1 (A:) ApaG {Vibrio cholerae [TaxId: 666]}
          Length = 124

 Score =  113 bits (284), Expect = 2e-32
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 1/94 (1%)

Query: 173 TTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETV 232
           +   +++ V   Y+  + +P    + + Y I ++NL   TVQL  R W I    G    V
Sbjct: 4   SLPCIKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTVQLMSRRWLITDADGKQTVV 63

Query: 233 RGRGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
            G GVVG++P + K+   + YSS  +L  P G M
Sbjct: 64  EGDGVVGEQPRI-KANDEYTYSSGTALDTPVGVM 96


>d1tzaa_ b.1.23.1 (A:) ApaG {Shewanella oneidensis [TaxId: 70863]}
          Length = 132

 Score =  110 bits (276), Expect = 4e-31
 Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)

Query: 173 TTENVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETV 232
              ++RV V   Y+  + SP    Y + Y I + NLGE   +L  RHW I   +G    V
Sbjct: 2   LDNSIRVEVKTEYIEQQSSPEDEKYLFSYTITIINLGEQAAKLETRHWIITDANGKTSEV 61

Query: 233 RGRGVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
           +G GVVG+ P +     A+QY+S   L  P G M
Sbjct: 62  QGAGVVGETPTI-PPNTAYQYTSGTVLDTPFGIM 94


>d1xq4a_ b.1.23.1 (A:) ApaG {Bordetella pertussis [TaxId: 520]}
          Length = 123

 Score =  103 bits (259), Expect = 9e-29
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 176 NVRVTVIPFYMGCRDSPTSSVYWWRYCIRLENLGELTVQLRERHWRIFSLSGTLETVRGR 235
           ++ V+V P Y+  +  P+   Y + Y +R+ N G    Q+  RHW I      ++ VRG 
Sbjct: 6   DLTVSVTPRYVPEQSDPSQQQYVFAYTVRITNTGSHPAQVISRHWIITDGEERVQEVRGL 65

Query: 236 GVVGQEPVLSKSLPAFQYSSHVSLQAPSGHM 266
           GVVGQ+P+L+     F+Y+S   L  P G M
Sbjct: 66  GVVGQQPLLAPG-ETFEYTSGCPLPTPIGTM 95


>d1vbva1 b.34.17.1 (A:3-97) Hypothetical protein YccV {Escherichia
           coli [TaxId: 562]}
          Length = 95

 Score = 38.7 bits (90), Expect = 6e-05
 Identities = 16/122 (13%), Positives = 33/122 (27%), Gaps = 35/122 (28%)

Query: 15  KYSTGQLFLHRVFGYRGIVLFPWLARVYDRDIPNKRDKPSDVNGSVGKEVKSKTHTFYQV 74
           K+  GQ   H + GY G+V+          DI             +    + +   +Y V
Sbjct: 3   KFGIGQQVRHSLLGYLGVVV----------DIDPVYSLSEPSPDELAVNDELRAAPWYHV 52

Query: 75  LIDSRDCPYIRAQTEAVTFLGNQNSNKSLYAIPGLDYVAHEDILPYSCSHEQPLHHELFD 134
           +++  +   +                          Y+A   +       E P    + +
Sbjct: 53  VMEDDNGLPVHT------------------------YLAEAQLSSEL-QDEHPEQPSMDE 87

Query: 135 KF 136
             
Sbjct: 88  LA 89


>d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS)
          domain {Archaeon (Methanocaldococcus jannaschii)
          [TaxId: 2190]}
          Length = 126

 Score = 30.8 bits (69), Expect = 0.066
 Identities = 15/60 (25%), Positives = 26/60 (43%)

Query: 30 RGIVLFPWLARVYDRDIPNKRDKPSDVNGSVGKEVKSKTHTFYQVLIDSRDCPYIRAQTE 89
          +G++L P +A +    +P       D+     KE+  K    ++V ID RD    R   +
Sbjct: 1  KGLILPPIVAPIQVVIVPLIFKGKEDIVMEKAKEIYEKLKGKFRVHIDDRDIRPGRKFND 60


>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP)
           {Escherichia coli [TaxId: 562]}
          Length = 796

 Score = 25.4 bits (55), Expect = 9.1
 Identities = 10/44 (22%), Positives = 19/44 (43%)

Query: 121 SCSHEQPLHHELFDKFLVHMPDKDPPFVAQQTLRTWQRKNHPWL 164
           +  H   +  +LF ++    P+K        T R W ++ +P L
Sbjct: 421 AALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPAL 464


>d1hc7a1 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS)
          domain {Thermus thermophilus [TaxId: 274]}
          Length = 127

 Score = 24.4 bits (52), Expect = 9.4
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 30 RGIVLFPWLARVYDRDIPNKRDKPSDVNGSVGKEVKSKTHT-FYQVLIDSRD 80
          RG+VL P LA +    +P  +D+  +      + ++        +V +D RD
Sbjct: 1  RGLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRD 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.432 

Gapped
Lambda     K      H
   0.267   0.0657    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,020,639
Number of extensions: 45978
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 10
Length of query: 266
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 182
Effective length of database: 1,254,276
Effective search space: 228278232
Effective search space used: 228278232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)