BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3672
(178 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BLW|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|C Chain C, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|E Chain E, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|G Chain G, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|I Chain I, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|K Chain K, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|M Chain M, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|O Chain O, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLX|A Chain A, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|C Chain C, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|E Chain E, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|G Chain G, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|I Chain I, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|K Chain K, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|M Chain M, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|O Chain O, Yeast Isocitrate Dehydrogenase (Apo Form)
Length = 349
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 67/144 (46%), Gaps = 30/144 (20%)
Query: 31 RFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMA-KLYPVWTNRKMITGFIWTTR 89
RF++ NRK VTAVHKANIMKLGDGLF N E+ K YP
Sbjct: 164 RFAFDFAKKYNRKSVTAVHKANIMKLGDGLFRNIITEIGQKEYP---------------- 207
Query: 90 DINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFD-----VMVMPNLYGNIV 144
DI+V I V N + Q V+ PHQFDV+V P++YG I ++ P L
Sbjct: 208 DIDV------SSIIVDNASMQAVAKPHQFDVLVTPSMYGTILGNIGAALIGGPGLVAGA- 260
Query: 145 DNLASDSVISRTGSCQQSCDMVSE 168
N D + GS D+ +
Sbjct: 261 -NFGRDYAVFEPGSRHVGLDIKGQ 283
>pdb|3BLV|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|C Chain C, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|E Chain E, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|G Chain G, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
Length = 354
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 65/144 (45%), Gaps = 30/144 (20%)
Query: 31 RFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMA-KLYPVWTNRKMITGFIWTTR 89
RF++ NRK VTAVHKANI KLGDGLF N E+ K YP
Sbjct: 164 RFAFDFAKKYNRKSVTAVHKANIXKLGDGLFRNIITEIGQKEYP---------------- 207
Query: 90 DINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFD-----VMVMPNLYGNIV 144
DI+V I V N + Q V+ PHQFDV+V P+ YG I ++ P L
Sbjct: 208 DIDV------SSIIVDNASXQAVAKPHQFDVLVTPSXYGTILGNIGAALIGGPGLVAGA- 260
Query: 145 DNLASDSVISRTGSCQQSCDMVSE 168
N D + GS D+ +
Sbjct: 261 -NFGRDYAVFEPGSRHVGLDIKGQ 283
>pdb|1WPW|A Chain A, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
pdb|1WPW|B Chain B, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
Length = 336
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 24/93 (25%)
Query: 39 LSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTI 98
L RKKVT VHKAN+M++ DGLF +C R ++ G + +
Sbjct: 158 LRRRKKVTCVHKANVMRITDGLFAEAC------------RSVLKGKVEYSE--------- 196
Query: 99 RRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIF 131
+ V +V NP FDV+V N+YG+I
Sbjct: 197 ---MYVDAAAANLVRNPQMFDVIVTENVYGDIL 226
>pdb|1X0L|A Chain A, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
pdb|1X0L|B Chain B, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
Length = 333
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 27/107 (25%)
Query: 42 RKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRI 101
RK + HKAN++ L GLFL++ KE+AK +P+ +NV +
Sbjct: 162 RKTLHIAHKANVLPLTQGLFLDTVKEVAKDFPL----------------VNV------QD 199
Query: 102 ITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLA 148
I V N Q+V P +FDV+V NL G+I +L +V L
Sbjct: 200 IIVDNCAMQLVMRPERFDVIVTTNLLGDILS-----DLAAGLVGGLG 241
>pdb|3ASJ|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|C Chain C, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|D Chain D, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
Length = 334
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 27/107 (25%)
Query: 42 RKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRI 101
RK + HKAN++ L GLFL++ KE+AK +P+ +NV +
Sbjct: 163 RKTLHIAHKANVLPLTQGLFLDTVKEVAKDFPL----------------VNV------QD 200
Query: 102 ITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLA 148
I V N Q+V P +FDV+V NL G+I +L +V L
Sbjct: 201 IIVDNCAMQLVMRPERFDVIVTTNLLGDILS-----DLAAGLVGGLG 242
>pdb|3BLW|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|D Chain D, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|F Chain F, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|H Chain H, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|J Chain J, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|L Chain L, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|N Chain N, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|P Chain P, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLX|B Chain B, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|D Chain D, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|F Chain F, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|H Chain H, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|J Chain J, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|L Chain L, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|N Chain N, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|P Chain P, Yeast Isocitrate Dehydrogenase (Apo Form)
Length = 354
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 26/102 (25%)
Query: 32 FSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDI 91
F Y + + R +V VHK+ I +L DGLF+N KE++K YP T +
Sbjct: 173 FEYARAI--GRPRVIVVHKSTIQRLADGLFVNVAKELSKEYPDLTLETEL---------- 220
Query: 92 NVFIWTIRRIITVFNWTRQIVSNPHQFD--VMVMPNLYGNIF 131
+ N ++V+NP + V V PNLYG+I
Sbjct: 221 ------------IDNSVLKVVTNPSAYTDAVSVCPNLYGDIL 250
>pdb|3BLV|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|D Chain D, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|F Chain F, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|H Chain H, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
Length = 354
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 26/102 (25%)
Query: 32 FSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDI 91
F Y + + R +V VHK+ I +L DGLF+N KE++K YP T +
Sbjct: 173 FEYARAI--GRPRVIVVHKSTIQRLADGLFVNVAKELSKEYPDLTLETEL---------- 220
Query: 92 NVFIWTIRRIITVFNWTRQIVSNPHQFD--VMVMPNLYGNIF 131
+ N ++V+NP + V V PNLYG+I
Sbjct: 221 ------------IDNSVLKVVTNPSAYTDAVSVCPNLYGDIL 250
>pdb|3AH3|A Chain A, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|B Chain B, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|C Chain C, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|D Chain D, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
Length = 334
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 22/90 (24%)
Query: 42 RKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRI 101
RK + HKAN++ L GLFL++ KE+AK +P+ +NV +
Sbjct: 163 RKTLHIAHKANVLPLTQGLFLDTVKEVAKDFPL----------------VNV------QD 200
Query: 102 ITVFNWTRQIVSNPHQFDVMVMPNLYGNIF 131
I V N Q+V P ++DV+V NL G+I
Sbjct: 201 IIVDNCATQLVMRPERYDVIVTTNLLGDIL 230
>pdb|3TY3|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY3|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY4|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
pdb|3TY4|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
Length = 366
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 19/87 (21%)
Query: 45 VTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRIITV 104
VT +HK+N+M + DGLF SC+ L P + + INV + + V
Sbjct: 195 VTIIHKSNVMSVTDGLFRESCRHAQSLDPSYAS-------------INVDEQIVDSM--V 239
Query: 105 FNWTRQIVSNPHQFDVMVMPNLYGNIF 131
+ R+ P FDV+V PNLYG+I
Sbjct: 240 YRLFRE----PECFDVVVAPNLYGDIL 262
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
pdb|2D1C|B Chain B, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
Length = 496
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 22/101 (21%)
Query: 31 RFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRD 90
RF++ RKKV K+NIMKL +G + +++A+ YP D
Sbjct: 172 RFAFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVAQEYP----------------D 215
Query: 91 INVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIF 131
I I V N Q+V P QF+V+V N+ G+I
Sbjct: 216 IEAV------HIIVDNAAHQLVKRPEQFEVIVTTNMNGDIL 250
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
pdb|3U1H|B Chain B, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
Length = 390
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 23/93 (24%)
Query: 39 LSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTI 98
L+ +KKVT+V KAN+++ L+ +E+AK YP M+
Sbjct: 200 LTRKKKVTSVDKANVLE-SSRLWREVAEEVAKEYPDVELEHML----------------- 241
Query: 99 RRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIF 131
V N Q++ NP QFDV+V N++G+I
Sbjct: 242 -----VDNAAMQLIRNPRQFDVIVTENMFGDIL 269
>pdb|2DHT|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7
pdb|2DHT|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7
pdb|2E0C|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7 At 2.0 A Resolution
pdb|2E0C|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7 At 2.0 A Resolution
pdb|2E5M|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain 7
pdb|2E5M|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain 7
Length = 409
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 42 RKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRI 101
RKKVT +HK N+MK +G F E+A K FI T +IN +I
Sbjct: 215 RKKVTIMHKGNVMKYTEGAFREWAYEVA--------LKEYRDFIVTEEEINQGKPDQGKI 266
Query: 102 I----TVFNWTRQIVSNPHQFDVMVMPNLYGN 129
I N +QI+ P ++D+++ PN+ G+
Sbjct: 267 ILNDRIADNMFQQIIIRPEEYDIILAPNVNGD 298
>pdb|1W0D|A Chain A, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|B Chain B, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|C Chain C, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|D Chain D, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|2G4O|A Chain A, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|B Chain B, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|C Chain C, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|D Chain D, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
Length = 337
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 22/90 (24%)
Query: 42 RKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRI 101
RK +T VHK N++ GL+L + E+ + YP D+ V
Sbjct: 171 RKHLTLVHKTNVLTFAGGLWLRTVDEVGECYP----------------DVEVAYQ----- 209
Query: 102 ITVFNWTRQIVSNPHQFDVMVMPNLYGNIF 131
V T ++++P +FDV+V NL+G+I
Sbjct: 210 -HVDAATIHMITDPGRFDVIVTDNLFGDII 238
>pdb|3VMK|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
pdb|3VMK|B Chain B, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
Length = 375
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 23/91 (25%)
Query: 40 SNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIR 99
RKKVT+V KAN++ L+ +E+AK YP D+ +
Sbjct: 194 GRRKKVTSVDKANVLAC-SVLWREVVEEVAKDYP----------------DVEL------ 230
Query: 100 RIITVFNWTRQIVSNPHQFDVMVMPNLYGNI 130
I + N T Q++ P++FDVM+ NL+G+I
Sbjct: 231 EHIYIDNATMQLLRRPNEFDVMLCSNLFGDI 261
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella
Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2
(M) From N-Terminal: 20% O Middle 70% M Residual 10% O
Length = 375
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 23/91 (25%)
Query: 40 SNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIR 99
RKKVT+V KAN++ L+ +E+AK YP D+ +
Sbjct: 194 GRRKKVTSVDKANVLAC-SVLWREVVEEVAKDYP----------------DVEL------ 230
Query: 100 RIITVFNWTRQIVSNPHQFDVMVMPNLYGNI 130
I + N T Q++ P++FDVM+ NL+G+I
Sbjct: 231 EHIYIDNATMQLLRRPNEFDVMLCSNLFGDI 261
>pdb|2IV0|A Chain A, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
pdb|2IV0|B Chain B, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
Length = 412
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 40 SNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIW---TTRDINVFIW 96
+NRK VT VHK NIMK +G F + E+AK + + +W + I
Sbjct: 213 NNRKSVTLVHKGNIMKYTEGAFRDWGYEVAKQ--EFGEYCITEDELWDKYGGKQPEGKIV 270
Query: 97 TIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGN 129
RI N +QI++ ++DV+ +PNL G+
Sbjct: 271 VKDRIAD--NMFQQILTRTDEYDVIALPNLNGD 301
>pdb|1BL5|A Chain A, Isocitrate Dehydrogenase From E. Coli Single Turnover Laue
Structure Of Rate-limited Product Complex, 10 Msec Time
Resolution
Length = 414
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 23 EETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMIT 82
EE R + + ++R VT VHK NIMK +G F + ++A+ ++I
Sbjct: 201 EEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREE---FGGELID 257
Query: 83 GFIW-TTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGN 129
G W ++ N + + + + +QI+ P ++DV+ NL G+
Sbjct: 258 GGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGD 305
>pdb|1GRO|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 23 EETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMIT 82
EE R + + ++R VT VHK NIMK +G F + ++A+ ++I
Sbjct: 203 EEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREE---FGGELID 259
Query: 83 GFIW-TTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGN 129
G W ++ N + + + + +QI+ P ++DV+ NL G+
Sbjct: 260 GGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGD 307
>pdb|1CW7|A Chain A, Low Temperature Structure Of Wild-Type Idh Complexed With
Mg- Isocitrate
Length = 416
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 23 EETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMIT 82
EE R + + ++R VT VHK NIMK +G F + ++A+ ++I
Sbjct: 203 EEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREE---FGGELID 259
Query: 83 GFIW-TTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGN 129
G W ++ N + + + + +QI+ P ++DV+ NL G+
Sbjct: 260 GGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGD 307
>pdb|6ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 23 EETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMIT 82
EE R + + ++R VT VHK NIMK +G F + ++A+ ++I
Sbjct: 203 EEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREE---FGGELID 259
Query: 83 GFIW-TTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGN 129
G W ++ N + + + + +QI+ P ++DV+ NL G+
Sbjct: 260 GGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGD 307
>pdb|1GRP|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 23 EETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMIT 82
EE R + + ++R VT VHK NIMK +G F + ++A+ ++I
Sbjct: 203 EEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREE---FGGELID 259
Query: 83 GFIW-TTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGN 129
G W ++ N + + + + +QI+ P ++DV+ NL G+
Sbjct: 260 GGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGD 307
>pdb|1P8F|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB1|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB3|A Chain A, Sites Of Binding And Orientation In A Four Location Model
For Protein Stereospecificity.
pdb|1AI2|A Chain A, Isocitrate Dehydrogenase Complexed With Isocitrate, Nadp+,
And Calcium (flash-cooled)
pdb|1AI3|A Chain A, Orbital Steering In The Catalytic Power Of Enzymes: Small
Structural Changes With Large Catalytic Consequences
pdb|1IKA|A Chain A, Structure Of Isocitrate Dehydrogenase With
Alpha-Ketoglutarate At 2.7 Angstroms Resolution:
Conformational Changes Induced By Decarboxylation Of
Isocitrate
pdb|1SJS|A Chain A, Access To Phosphorylation In Isocitrate Dehydrogenase May
Occur By Domain Shifting
pdb|3ICD|A Chain A, Structure Of A Bacterial Enzyme Regulated By
Phosphorylation, Isocitrate Dehydrogenase
pdb|5ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|9ICD|A Chain A, Catalytic Mechanism Of Nadp+-Dependent Isocitrate
Dehydrogenase: Implications From The Structures Of
Magnesium-Isocitrate And Nadp+ Complexes
pdb|3LCB|C Chain C, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|3LCB|D Chain D, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|4AJ3|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Nadp - The
Pseudo-Michaelis Complex
pdb|4AJA|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Thionadp
Length = 416
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 23 EETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMIT 82
EE R + + ++R VT VHK NIMK +G F + ++A+ ++I
Sbjct: 203 EEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREE---FGGELID 259
Query: 83 GFIW-TTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGN 129
G W ++ N + + + + +QI+ P ++DV+ NL G+
Sbjct: 260 GGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGD 307
>pdb|4ICD|A Chain A, Regulation Of Isocitrate Dehydrogenase By Phosphorylation
Involves No Long-Range Conformational Change In The Free
Enzyme
Length = 416
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 23 EETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMIT 82
EE R + + ++R VT VHK NIMK +G F + ++A+ ++I
Sbjct: 203 EEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREE---FGGELID 259
Query: 83 GFIW-TTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGN 129
G W ++ N + + + + +QI+ P ++DV+ NL G+
Sbjct: 260 GGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGD 307
>pdb|1HJ6|A Chain A, Isocitrate Dehydrogenase S113e Mutant Complexed With
Isopropylmalate, Nadp+ And Magnesium (Flash-Cooled)
pdb|7ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|8ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 23 EETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMIT 82
EE R + + ++R VT VHK NIMK +G F + ++A+ ++I
Sbjct: 203 EEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREE---FGGELID 259
Query: 83 GFIW-TTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGN 129
G W ++ N + + + + +QI+ P ++DV+ NL G+
Sbjct: 260 GGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGD 307
>pdb|1IDD|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme
pdb|1IDE|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Steady-State
Intermediate Complex (Laue Determination)
Length = 416
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 23 EETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMIT 82
EE R + + ++R VT VHK NIMK +G F + ++A+ ++I
Sbjct: 203 EEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREE---FGGELID 259
Query: 83 GFIW-TTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGN 129
G W ++ N + + + + +QI+ P ++DV+ NL G+
Sbjct: 260 GGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGD 307
>pdb|2AYQ|A Chain A, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
pdb|2AYQ|B Chain B, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
Length = 366
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 23/90 (25%)
Query: 42 RKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRI 101
RKK+ +V KAN+++ ++ +E AK YP M+
Sbjct: 182 RKKLASVDKANVLE-SSRMWREIAEETAKKYPDVELSHML-------------------- 220
Query: 102 ITVFNWTRQIVSNPHQFDVMVMPNLYGNIF 131
V + + Q+++NP QFDV+V N++G+I
Sbjct: 221 --VDSTSMQLIANPGQFDVIVTENMFGDIL 248
>pdb|4AJB|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii) And
Thionadp
pdb|4AJC|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate, Calcium(Ii)
And Adenine Nucleotide Phosphate
pdb|4AJR|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate,
Magnesium(Ii) And Nadph - The Product Complex
pdb|4AJS|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii),
Adenosine 2',5'-Biphosphate And
Ribosylnicotinamide-5'-Phosphate
Length = 416
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 23 EETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMIT 82
EE R + + ++R VT VHK NIMK +G F + ++A+ ++I
Sbjct: 203 EEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREE---FGGELID 259
Query: 83 GFIW-TTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGN 129
G W ++ N + + + + +QI+ P ++DV+ NL G+
Sbjct: 260 GGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGD 307
>pdb|1V53|A Chain A, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
pdb|1V53|B Chain B, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
Length = 366
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 23/90 (25%)
Query: 42 RKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRI 101
RKK+ +V KAN+++ ++ +E AK YP M+
Sbjct: 182 RKKLASVDKANVLE-SSRMWREIAEETAKKYPDVELSHML-------------------- 220
Query: 102 ITVFNWTRQIVSNPHQFDVMVMPNLYGNIF 131
V + + Q+++NP QFDV+V N++G+I
Sbjct: 221 --VDSTSMQLIANPGQFDVIVTENMFGDIL 248
>pdb|1ISO|A Chain A, Isocitrate Dehydrogenase: Structure Of An Engineered
Nadp+--> Nad+ Specificity-Reversal Mutant
Length = 416
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 23 EETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMIT 82
EE R + + ++R VT VHK NIMK +G F + ++A+ ++I
Sbjct: 203 EEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREE---FGGELID 259
Query: 83 GFIW-TTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGN 129
G W ++ N + + + + +QI+ P ++DV+ NL G+
Sbjct: 260 GGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGD 307
>pdb|1V5B|A Chain A, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|B Chain B, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|C Chain C, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|D Chain D, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|E Chain E, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|F Chain F, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|G Chain G, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|H Chain H, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
Length = 366
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 23/90 (25%)
Query: 42 RKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRI 101
RKK+ +V KAN+++ ++ +E AK YP M+
Sbjct: 182 RKKLASVDKANVLE-SSRMWREIAEETAKKYPDVELSHML-------------------- 220
Query: 102 ITVFNWTRQIVSNPHQFDVMVMPNLYGNIF 131
V + Q+++NP QFDV+V N++G+I
Sbjct: 221 --VDSTAMQLIANPGQFDVIVTENMFGDIL 248
>pdb|3DMS|A Chain A, 1.65a Crystal Structure Of Isocitrate Dehydrogenase From
Burkholderia Pseudomallei
Length = 427
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 40 SNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTT-RDINVFIWTI 98
++RK VT VHK NIMK +G F ++ +A+ ++I G W ++ +
Sbjct: 230 NDRKSVTLVHKGNIMKFTEGAFRDAGYALAQKE---FGAELIDGGPWMKFKNPKTGNEIV 286
Query: 99 RRIITVFNWTRQIVSNPHQFDVMVMPNLYGN 129
+ + +QI+ P ++DV+ NL G+
Sbjct: 287 VKDSIADAFLQQILLRPAEYDVIATLNLNGD 317
>pdb|1CNZ|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
pdb|1CNZ|B Chain B, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
Length = 363
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 23/90 (25%)
Query: 42 RKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRI 101
R+KVT++ KAN+++ L+ ++AK YP D+ + I
Sbjct: 187 RRKVTSIDKANVLQ-SSILWREIVNDVAKTYP----------------DVELAHMYID-- 227
Query: 102 ITVFNWTRQIVSNPHQFDVMVMPNLYGNIF 131
N T Q++ +P QFDV++ NL+G+I
Sbjct: 228 ----NATMQLIKDPSQFDVLLCSNLFGDIL 253
>pdb|1HQS|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
pdb|1HQS|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
Length = 423
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 15/102 (14%)
Query: 41 NRKKVTAVHKANIMKLGDGLFLNSCKEMA-KLYP----VWTNRKMI--------TGFIWT 87
RK VT VHK NIMK +G F N E+A K Y W I +
Sbjct: 212 GRKSVTLVHKGNIMKFTEGAFKNWGYELAEKEYGDKVFTWAQYDRIAEEQGKDAANKAQS 271
Query: 88 TRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGN 129
+ I I +F +QI++ P++FDV+ NL G+
Sbjct: 272 EAEAAGKIIIKDSIADIF--LQQILTRPNEFDVVATMNLNGD 311
>pdb|1CW1|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase Mutant K230m
Bound To Isocitrate And Mn2+
pdb|1CW4|A Chain A, Crystal Structure Of K230m Isocitrate Dehydrogenase In
Complex With Alpha-Ketoglutarate
pdb|1IDC|A Chain A, Isocitrate Dehydrogenase From E.coli (mutant K230m),
Steady-state Intermediate Complex Determined By Laue
Crystallography
pdb|1IDF|A Chain A, Isocitrate Dehydrogenase K230m Mutant Apo Enzyme
Length = 416
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 23 EETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMIT 82
EE R + + ++R VT VH NIMK +G F + ++A+ ++I
Sbjct: 203 EEGTKRLVRAAIEYAIANDRDSVTLVHMGNIMKFTEGAFKDWGYQLAREE---FGGELID 259
Query: 83 GFIW-TTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGN 129
G W ++ N + + + + +QI+ P ++DV+ NL G+
Sbjct: 260 GGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGD 307
>pdb|1VLC|A Chain A, Crystal Structure Of 3-isopropylmalate Dehydrogenase
(tm0556) From Thermotoga Maritima At 1.90 A Resolution
Length = 366
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 25/102 (24%)
Query: 42 RKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRI 101
RKKVT+V KAN++ L+ E+A+ YP D+ +
Sbjct: 191 RKKVTSVDKANVL-YSSMLWRKVVNEVAREYP----------------DVEL------TH 227
Query: 102 ITVFNWTRQIVSNPHQFDVMVMPNLYGNIF--DVMVMPNLYG 141
I V N Q++ P QFDV++ N++G+I + +P G
Sbjct: 228 IYVDNAAMQLILKPSQFDVILTTNMFGDILSDESAALPGSLG 269
>pdb|3VKZ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At Atmospheric Pressure
pdb|3VL2|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 160 Mpa
pdb|3VL3|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 340 Mpa
pdb|3VL4|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 410 Mpa
pdb|3VL6|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 580 Mpa
pdb|3VL7|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 650 Mpa
pdb|3VMJ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1
Length = 375
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 28/119 (23%)
Query: 40 SNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIR 99
RKKVT+V KAN++ +C + W R+++ D+ +
Sbjct: 194 GRRKKVTSVDKANVL---------ACSVL------W--RQVVEEVAVDFPDVEL------ 230
Query: 100 RIITVFNWTRQIVSNPHQFDVMVMPNLYGNIF-DVMVMPNLYGNIVDNLASDSVISRTG 157
I + N T Q++ P +FDVM+ NL+G+I D + M L G++ L S + ++ TG
Sbjct: 231 EHIYIDNATMQLLRRPDEFDVMLCSNLFGDILSDEIAM--LTGSM--GLLSSASMNSTG 285
>pdb|1CM7|A Chain A, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
pdb|1CM7|B Chain B, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
Length = 363
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 23/90 (25%)
Query: 42 RKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRI 101
R KVT++ KAN+++ L+ E+A YP D+ + I
Sbjct: 187 RHKVTSIDKANVLQ-SSILWREIVNEIATEYP----------------DVELAHMYID-- 227
Query: 102 ITVFNWTRQIVSNPHQFDVMVMPNLYGNIF 131
N T Q++ +P QFDV++ NL+G+I
Sbjct: 228 ----NATMQLIKDPSQFDVLLCSNLFGDIL 253
>pdb|3UDU|A Chain A, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|B Chain B, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|C Chain C, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|D Chain D, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|E Chain E, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|F Chain F, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|G Chain G, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|H Chain H, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
Length = 361
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 78 RKMITGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIF 131
R+++ +DIN+ + V N QIV NP FDVM+ NL+G+I
Sbjct: 203 REVVANVAKDYQDINL------EYMYVDNAAMQIVKNPSIFDVMLCSNLFGDIL 250
>pdb|1V94|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Aeropyrum Pernix
pdb|1V94|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Aeropyrum Pernix
pdb|1TYO|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix In Complex With Etheno-Nadp
pdb|1TYO|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix In Complex With Etheno-Nadp
pdb|1XGV|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix
pdb|1XGV|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix
pdb|1XKD|A Chain A, Ternary Complex Of Isocitrate Dehydrogenase From The
Hyperthermophile Aeropyrum Pernix
pdb|1XKD|B Chain B, Ternary Complex Of Isocitrate Dehydrogenase From The
Hyperthermophile Aeropyrum Pernix
Length = 435
Score = 33.1 bits (74), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 15/92 (16%)
Query: 45 VTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRIITV 104
VT +HK NIMK +G F+ E+A + + T +++ +R +
Sbjct: 228 VTIMHKGNIMKYTEGAFMRWAYEVA--------LEKFREHVVTEQEVQEKYGGVRPEGKI 279
Query: 105 F-------NWTRQIVSNPHQFDVMVMPNLYGN 129
N +QI++ P + V+V PNL G+
Sbjct: 280 LVNDRIADNMLQQIITRPWDYQVIVAPNLNGD 311
>pdb|3UDO|A Chain A, Crystal Structure Of Putative Isopropylamlate
Dehydrogenase From Campylobacter Jejuni
Length = 361
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 78 RKMITGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIF 131
R+++ +DIN+ V N QIV NP FDV + NL+G+I
Sbjct: 203 REVVANVAKDYQDINL------EYXYVDNAAXQIVKNPSIFDVXLCSNLFGDIL 250
>pdb|3R8W|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
Length = 405
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 104 VFNWTRQIVSNPHQFDVMVMPNLYGNIF 131
V N Q+V +P QFD +V N++G+I
Sbjct: 263 VDNAAMQLVRDPKQFDTIVTNNIFGDIL 290
>pdb|4IWH|A Chain A, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
pdb|4IWH|B Chain B, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
Length = 363
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 104 VFNWTRQIVSNPHQFDVMVMPNLYGNIF 131
V N Q+ P QFDV+V N++G+I
Sbjct: 229 VDNAAMQLAKAPKQFDVIVTGNMFGDIL 256
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 30.4 bits (67), Expect = 0.62, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 37 DLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIW 96
DLL R+ + H +K DG F KE L V +NRK GF+ R INV +
Sbjct: 544 DLL--RQSLVHRHPELEIKSVDG-FQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVT 600
Query: 97 TIRRIITVFNWTRQIVSNPHQF 118
RR + V +R + N H F
Sbjct: 601 RARRHVAVICDSRTV--NNHAF 620
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 30.4 bits (67), Expect = 0.62, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 37 DLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIW 96
DLL R+ + H +K DG F KE L V +NRK GF+ R INV +
Sbjct: 544 DLL--RQSLVHRHPELEIKSVDG-FQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVT 600
Query: 97 TIRRIITVFNWTRQIVSNPHQF 118
RR + V +R + N H F
Sbjct: 601 RARRHVAVICDSRTV--NNHAF 620
>pdb|1A05|A Chain A, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
pdb|1A05|B Chain B, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
Length = 358
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 104 VFNWTRQIVSNPHQFDVMVMPNLYGNIF 131
V N Q++ P QFDV++ N++G+I
Sbjct: 221 VDNAAMQLIRAPAQFDVLLTGNMFGDIL 248
>pdb|3FMX|X Chain X, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Putida Complexed With Nadh
Length = 364
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 24/102 (23%)
Query: 32 FSYVQDLLS--NRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTR 89
Y DL RK VT+ K+N M + + + MA YP + W +
Sbjct: 172 LKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAMAAHYPHVS---------WDKQ 222
Query: 90 DINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIF 131
I++ + V P +FDV+V NL+G+I
Sbjct: 223 HIDIL-------------CARFVLQPERFDVVVASNLFGDIL 251
>pdb|1VDE|A Chain A, Pi-Scei, A Homing Endonuclease With Protein Splicing
Activity
pdb|1VDE|B Chain B, Pi-Scei, A Homing Endonuclease With Protein Splicing
Activity
pdb|1DFA|A Chain A, Crystal Structure Of Pi-Scei In C2 Space Group
Length = 454
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 15/131 (11%)
Query: 55 KLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDIN---VFIWTIR-----------R 100
K DG + KE++K YP+ + + + R + F WTI R
Sbjct: 113 KAPDGRIVELVKEVSKSYPISEGPERANELVESYRKASNKAYFEWTIEARDLSLLGSHVR 172
Query: 101 IITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGN-IVDNLASDSVISRTGSC 159
T + + N H FD M + I V+ L G I D L+ + S
Sbjct: 173 KATYQTYAPILYENDHFFDYMQKSKFHLTIEGPKVLAYLLGLWIGDGLSDRATFSVDSRD 232
Query: 160 QQSCDMVSEFA 170
+ V+E+A
Sbjct: 233 TSLMERVTEYA 243
>pdb|1EF0|A Chain A, Crystal Structure Of Pi-Scei Miniprecursor
pdb|1EF0|B Chain B, Crystal Structure Of Pi-Scei Miniprecursor
Length = 462
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 15/131 (11%)
Query: 55 KLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDIN---VFIWTIR-----------R 100
K DG + KE++K YP+ + + + R + F WTI R
Sbjct: 117 KAPDGRIVELVKEVSKSYPISEGPERANELVESYRKASNKAYFEWTIEARDLSLLGSHVR 176
Query: 101 IITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGN-IVDNLASDSVISRTGSC 159
T + + N H FD M + I V+ L G I D L+ + S
Sbjct: 177 KATYQTYAPILYENDHFFDYMQKSKFHLTIEGPKVLAYLLGLWIGDGLSDRATFSVDSRD 236
Query: 160 QQSCDMVSEFA 170
+ V+E+A
Sbjct: 237 TSLMERVTEYA 247
>pdb|1UM2|A Chain A, Crystal Structure Of The Vma1-Derived Endonuclease With
The Ligated Extein Segment
pdb|1UM2|B Chain B, Crystal Structure Of The Vma1-Derived Endonuclease With
The Ligated Extein Segment
Length = 454
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 15/131 (11%)
Query: 55 KLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDIN---VFIWTIR-----------R 100
K DG + KE++K YP+ + + + R + F WTI R
Sbjct: 113 KAPDGRIVELVKEVSKSYPISEGPERANELVESYRKASNKAYFEWTIEARDLSLLGSHVR 172
Query: 101 IITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGN-IVDNLASDSVISRTGSC 159
T + + N H FD M + I V+ L G I D L+ + S
Sbjct: 173 KATYQTYAPILYENDHFFDYMQKSKFHLTIEGPKVLAYLLGLWIGDGLSDRATFSVDSRD 232
Query: 160 QQSCDMVSEFA 170
+ V+E+A
Sbjct: 233 TSLMERVTEYA 243
>pdb|1JVA|A Chain A, Crystal Structure Of The Vma1-Derived Endonuclease Bearing
The N And C Extein Propeptides
pdb|1JVA|B Chain B, Crystal Structure Of The Vma1-Derived Endonuclease Bearing
The N And C Extein Propeptides
Length = 475
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 15/131 (11%)
Query: 55 KLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDIN---VFIWTIR-----------R 100
K DG + KE++K YP+ + + + R + F WTI R
Sbjct: 124 KAPDGRIVELVKEVSKSYPISEGPERANELVESYRKASNKAYFEWTIEARDLSLLGSHVR 183
Query: 101 IITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGN-IVDNLASDSVISRTGSC 159
T + + N H FD M + I V+ L G I D L+ + S
Sbjct: 184 KATYQTYAPILYENDHFFDYMQKSKFHLTIEGPKVLAYLLGLWIGDGLSDRATFSVDSRD 243
Query: 160 QQSCDMVSEFA 170
+ V+E+A
Sbjct: 244 TSLMERVTEYA 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.137 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,600,269
Number of Sequences: 62578
Number of extensions: 166152
Number of successful extensions: 542
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 447
Number of HSP's gapped (non-prelim): 86
length of query: 178
length of database: 14,973,337
effective HSP length: 92
effective length of query: 86
effective length of database: 9,216,161
effective search space: 792589846
effective search space used: 792589846
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)