Query psy3672
Match_columns 178
No_of_seqs 115 out of 1115
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 22:40:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3672.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3672hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0473 LeuB Isocitrate/isopro 100.0 2.9E-50 6.2E-55 356.6 8.0 137 3-164 132-273 (348)
2 PLN00123 isocitrate dehydrogen 100.0 5.8E-48 1.3E-52 344.6 11.3 138 3-165 146-284 (360)
3 PRK08997 isocitrate dehydrogen 100.0 9.8E-48 2.1E-52 340.5 11.8 139 3-167 123-264 (334)
4 PRK03437 3-isopropylmalate deh 100.0 1E-47 2.2E-52 341.5 10.5 142 3-167 134-280 (344)
5 PRK14025 multifunctional 3-iso 100.0 1.7E-47 3.7E-52 338.5 11.5 139 3-167 118-261 (330)
6 PLN00118 isocitrate dehydrogen 100.0 9.9E-47 2.1E-51 338.0 11.3 139 3-167 162-302 (372)
7 PRK09222 isocitrate dehydrogen 100.0 9.2E-47 2E-51 346.9 11.3 139 3-167 127-266 (482)
8 TIGR02089 TTC tartrate dehydro 100.0 1.1E-46 2.3E-51 335.8 10.3 138 3-167 138-283 (352)
9 TIGR00175 mito_nad_idh isocitr 100.0 1.5E-46 3.2E-51 332.8 11.1 140 3-167 123-263 (333)
10 TIGR02924 ICDH_alpha isocitrat 100.0 8.8E-47 1.9E-51 346.2 9.9 139 3-167 123-262 (473)
11 PRK08194 tartrate dehydrogenas 100.0 1.1E-46 2.3E-51 335.8 9.6 141 3-167 136-280 (352)
12 TIGR02088 LEU3_arch isopropylm 100.0 4.1E-46 8.9E-51 328.8 11.3 137 3-167 120-256 (322)
13 TIGR00169 leuB 3-isopropylmala 100.0 7.1E-46 1.5E-50 330.2 11.6 137 3-167 137-279 (349)
14 PLN02329 3-isopropylmalate deh 100.0 3.9E-46 8.4E-51 337.3 9.7 137 3-167 184-327 (409)
15 PRK07006 isocitrate dehydrogen 100.0 6E-46 1.3E-50 336.4 10.1 129 13-167 186-334 (409)
16 PRK06451 isocitrate dehydrogen 100.0 1.6E-45 3.5E-50 333.8 11.0 146 13-167 185-334 (412)
17 TIGR00183 prok_nadp_idh isocit 100.0 7.3E-45 1.6E-49 329.9 10.5 130 12-167 192-341 (416)
18 PRK00772 3-isopropylmalate deh 100.0 2.5E-44 5.4E-49 321.2 11.8 137 3-167 140-282 (358)
19 PF00180 Iso_dh: Isocitrate/is 100.0 7.2E-45 1.6E-49 322.8 6.0 136 3-164 133-276 (348)
20 PRK07362 isocitrate dehydrogen 100.0 2.3E-43 5.1E-48 322.4 8.9 150 12-167 199-398 (474)
21 KOG0785|consensus 100.0 3.4E-44 7.4E-49 314.6 2.3 136 4-164 157-293 (365)
22 PTZ00435 isocitrate dehydrogen 100.0 5E-42 1.1E-46 310.8 11.1 126 13-167 178-312 (413)
23 TIGR00127 nadp_idh_euk isocitr 100.0 7.6E-42 1.6E-46 309.3 10.8 126 13-167 176-310 (409)
24 PRK08299 isocitrate dehydrogen 100.0 1E-41 2.2E-46 308.0 10.9 123 17-167 177-309 (402)
25 KOG0784|consensus 100.0 6.6E-42 1.4E-46 302.5 4.9 126 13-163 173-298 (375)
26 PLN00103 isocitrate dehydrogen 100.0 1.9E-40 4.1E-45 300.4 10.2 127 14-168 178-314 (410)
27 PLN00096 isocitrate dehydrogen 100.0 6.9E-40 1.5E-44 294.7 10.1 125 15-167 167-308 (393)
28 PLN03065 isocitrate dehydrogen 100.0 5.4E-39 1.2E-43 295.0 11.0 126 13-167 246-380 (483)
29 COG0538 Icd Isocitrate dehydro 100.0 1.6E-36 3.4E-41 271.5 9.7 144 12-164 182-328 (407)
30 KOG0786|consensus 100.0 2.5E-32 5.5E-37 236.2 6.5 141 3-166 140-288 (363)
31 KOG1526|consensus 99.8 7.8E-22 1.7E-26 174.3 5.3 126 15-161 188-314 (422)
32 cd06308 PBP1_sensor_kinase_lik 76.6 32 0.0007 27.8 9.5 84 28-126 106-191 (270)
33 PRK13810 orotate phosphoribosy 64.3 21 0.00046 29.4 5.9 83 50-140 3-96 (187)
34 PRK12862 malic enzyme; Reviewe 61.5 17 0.00037 36.4 5.6 97 22-139 610-719 (763)
35 cd06320 PBP1_allose_binding Pe 60.3 71 0.0015 25.8 8.2 83 27-125 105-190 (275)
36 cd06323 PBP1_ribose_binding Pe 57.8 84 0.0018 25.0 8.2 83 29-126 106-190 (268)
37 PF12847 Methyltransf_18: Meth 53.6 56 0.0012 22.9 5.9 61 32-125 15-78 (112)
38 cd01545 PBP1_SalR Ligand-bindi 50.3 1.1E+02 0.0023 24.4 7.7 23 27-49 103-125 (270)
39 cd06294 PBP1_ycjW_transcriptio 48.9 1.3E+02 0.0028 24.0 8.0 84 27-125 107-191 (270)
40 cd06309 PBP1_YtfQ_like Peripla 47.6 1.4E+02 0.0029 24.2 7.9 86 27-127 107-195 (273)
41 cd06311 PBP1_ABC_sugar_binding 44.9 1.6E+02 0.0035 23.7 8.0 81 28-126 111-194 (274)
42 cd06313 PBP1_ABC_sugar_binding 43.1 1.8E+02 0.004 23.7 8.2 20 107-126 173-192 (272)
43 cd06305 PBP1_methylthioribose_ 42.7 1.7E+02 0.0038 23.3 8.1 19 107-125 171-191 (273)
44 TIGR00651 pta phosphate acetyl 42.6 54 0.0012 29.1 5.1 106 14-140 146-268 (303)
45 cd06300 PBP1_ABC_sugar_binding 41.6 1.8E+02 0.004 23.3 8.5 22 106-127 174-195 (272)
46 cd06319 PBP1_ABC_sugar_binding 40.7 1.9E+02 0.0041 23.2 9.7 32 18-49 99-132 (277)
47 PRK11041 DNA-binding transcrip 40.3 1.4E+02 0.0031 24.5 7.1 20 106-125 202-221 (309)
48 cd06287 PBP1_LacI_like_8 Ligan 39.9 2.1E+02 0.0046 23.5 8.3 23 27-49 103-125 (269)
49 PF00532 Peripla_BP_1: Peripla 39.8 2.3E+02 0.005 23.9 8.8 82 28-125 104-188 (279)
50 KOG1014|consensus 37.3 1.1E+02 0.0024 27.8 6.3 88 31-128 64-162 (312)
51 PF00175 NAD_binding_1: Oxidor 36.2 1.5E+02 0.0032 20.6 7.2 89 26-124 8-99 (109)
52 cd06322 PBP1_ABC_sugar_binding 35.8 2.3E+02 0.0049 22.6 8.5 83 28-127 105-189 (267)
53 PF03602 Cons_hypoth95: Conser 35.3 74 0.0016 25.9 4.6 20 33-53 57-76 (183)
54 cd06288 PBP1_sucrose_transcrip 35.1 2E+02 0.0044 22.8 7.1 23 27-49 101-123 (269)
55 cd01542 PBP1_TreR_like Ligand- 35.0 2.2E+02 0.0048 22.5 7.2 23 27-49 99-121 (259)
56 cd06270 PBP1_GalS_like Ligand 34.7 2.4E+02 0.0052 22.6 8.3 19 107-125 167-185 (268)
57 cd01537 PBP1_Repressors_Sugar_ 34.7 2.1E+02 0.0045 22.2 6.9 45 28-73 104-148 (264)
58 cd06303 PBP1_LuxPQ_Quorum_Sens 32.3 2.8E+02 0.0061 22.6 8.7 19 107-125 180-198 (280)
59 PF00582 Usp: Universal stress 32.2 40 0.00086 23.5 2.2 26 23-49 12-37 (140)
60 cd06321 PBP1_ABC_sugar_binding 30.8 2.8E+02 0.0061 22.2 8.8 55 18-76 99-153 (271)
61 PRK07232 bifunctional malic en 30.7 1.6E+02 0.0034 29.8 6.7 126 14-168 591-732 (752)
62 cd06273 PBP1_GntR_like_1 This 29.2 2.9E+02 0.0064 21.9 7.2 20 106-125 167-186 (268)
63 cd06310 PBP1_ABC_sugar_binding 29.2 3E+02 0.0065 22.0 8.3 20 107-126 173-192 (273)
64 cd01574 PBP1_LacI Ligand-bindi 29.0 2.9E+02 0.0064 21.9 8.0 23 28-50 102-124 (264)
65 COG1609 PurR Transcriptional r 29.0 3.8E+02 0.0081 23.5 8.2 83 27-126 160-246 (333)
66 cd06293 PBP1_LacI_like_11 Liga 28.0 3.2E+02 0.0068 21.9 8.2 20 107-126 167-186 (269)
67 PF14542 Acetyltransf_CG: GCN5 27.6 84 0.0018 22.0 3.2 20 26-46 40-59 (78)
68 COG0655 WrbA Multimeric flavod 27.4 1.7E+02 0.0036 23.8 5.4 46 16-62 6-52 (207)
69 cd06271 PBP1_AglR_RafR_like Li 26.9 3.2E+02 0.0069 21.6 7.9 20 106-125 170-189 (268)
70 TIGR02634 xylF D-xylose ABC tr 26.8 3.8E+02 0.0083 22.5 8.4 21 106-126 172-193 (302)
71 cd06277 PBP1_LacI_like_1 Ligan 26.8 2.5E+02 0.0054 22.5 6.3 23 27-49 103-125 (268)
72 cd01988 Na_H_Antiporter_C The 26.7 72 0.0016 22.7 2.8 28 24-52 10-37 (132)
73 cd06296 PBP1_CatR_like Ligand- 26.4 3.1E+02 0.0067 21.8 6.8 20 107-126 168-187 (270)
74 PF07820 TraC: TraC-like prote 25.9 58 0.0013 24.6 2.2 38 24-74 24-61 (92)
75 cd01544 PBP1_GalR Ligand-bindi 25.7 3.6E+02 0.0078 21.8 7.8 24 28-51 98-121 (270)
76 PF00808 CBFD_NFYB_HMF: Histon 25.7 64 0.0014 21.6 2.2 23 24-46 35-57 (65)
77 cd06272 PBP1_hexuronate_repres 25.7 2.8E+02 0.006 22.1 6.3 22 106-127 161-182 (261)
78 PRK10355 xylF D-xylose transpo 25.6 3.3E+02 0.0071 23.5 7.2 22 106-127 199-221 (330)
79 PRK09982 universal stress prot 25.3 90 0.0019 23.5 3.2 27 24-51 14-40 (142)
80 cd06286 PBP1_CcpB_like Ligand- 25.2 3.5E+02 0.0075 21.4 7.3 22 105-126 163-184 (260)
81 cd07981 TAF12 TATA Binding Pro 25.1 39 0.00085 23.6 1.1 27 19-45 29-55 (72)
82 COG0375 HybF Zn finger protein 25.0 86 0.0019 24.5 3.1 24 26-49 7-30 (115)
83 PRK09653 eutD phosphotransacet 25.0 1.4E+02 0.0031 26.5 4.9 107 14-141 162-284 (324)
84 COG2205 KdpD Osmosensitive K+ 24.8 4.3E+02 0.0093 27.4 8.6 100 18-125 253-374 (890)
85 PRK10423 transcriptional repre 24.2 3.7E+02 0.0079 22.3 7.0 22 28-49 160-181 (327)
86 PF08883 DOPA_dioxygen: Dopa 4 24.1 88 0.0019 23.9 2.9 28 105-133 58-85 (104)
87 PRK05713 hypothetical protein; 23.4 4.7E+02 0.01 22.5 7.7 53 24-78 202-254 (312)
88 cd06267 PBP1_LacI_sugar_bindin 22.4 3.7E+02 0.0081 20.8 8.5 44 28-72 102-145 (264)
89 COG3681 L-cysteine desulfidase 22.2 41 0.00089 31.3 0.9 51 105-156 38-88 (433)
90 cd01989 STK_N The N-terminal d 22.1 93 0.002 22.9 2.7 26 24-50 10-35 (146)
91 PRK15005 universal stress prot 21.7 1E+02 0.0022 22.5 2.9 23 26-49 17-39 (144)
92 cd01536 PBP1_ABC_sugar_binding 21.7 4E+02 0.0086 20.8 8.5 83 28-125 105-189 (267)
93 COG1222 RPT1 ATP-dependent 26S 21.5 1E+02 0.0022 28.9 3.3 25 26-51 229-253 (406)
94 smart00803 TAF TATA box bindin 21.5 66 0.0014 22.2 1.6 26 22-47 32-57 (65)
95 cd06278 PBP1_LacI_like_2 Ligan 21.2 4.1E+02 0.009 20.9 7.3 24 26-49 99-122 (266)
96 cd01543 PBP1_XylR Ligand-bindi 20.8 4.4E+02 0.0096 21.1 7.1 22 29-50 96-117 (265)
97 KOG3040|consensus 20.7 2.1E+02 0.0046 25.2 4.9 104 15-134 112-216 (262)
98 cd02975 PfPDO_like_N Pyrococcu 20.4 3.5E+02 0.0076 19.7 6.2 55 25-82 6-61 (113)
99 TIGR02469 CbiT precorrin-6Y C5 20.2 3E+02 0.0065 19.2 5.0 21 31-51 32-52 (124)
No 1
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-50 Score=356.57 Aligned_cols=137 Identities=31% Similarity=0.377 Sum_probs=130.5
Q ss_pred eeecceeccc---ceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEE
Q psy3672 3 LYLLDRLRQL---SVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRK 79 (178)
Q Consensus 3 ~~~~~~~~~~---~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~ 79 (178)
+|||.+.+.. ++++++++||++++|||+|+|||+|++|+||+||+|||+|||+.++|+|+++++|++++||+|++++
T Consensus 132 ~Y~G~~~~~~~~~eva~~~~~~Tr~~~eRI~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva~~yPdv~~~~ 211 (348)
T COG0473 132 LYFGEEGRILGGGEVAIDTKVITRKGSERIARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVAKEYPDVELDH 211 (348)
T ss_pred cccCCCccccCCCeEEEEEEeccHHHHHHHHHHHHHHHHhhCCCceEEEehhhhhhhhhHHHHHHHHHHhhcCCCcchhH
Confidence 6999877422 3999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEEeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCC--C
Q psy3672 80 MITGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRT--G 157 (178)
Q Consensus 80 ~~v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~--~ 157 (178)
+++ |+++||||++|++||||||+|||||||||++|+++||+||+|||| +|+. +
T Consensus 212 ~~V----------------------D~aam~lV~~P~~FDViVt~NlFGDILSD~aa~l~GslGl~PSAn---ig~~~~~ 266 (348)
T COG0473 212 MYV----------------------DAAAMQLVRNPEQFDVIVTSNLFGDILSDEAAALTGSLGLAPSAN---LGDERGP 266 (348)
T ss_pred HhH----------------------HHHHHHHhhCccccCEEEEccchhHHHHhHHHHhcCccccCccCc---cCCCCCC
Confidence 999 999999999999999999999999999999999999999999999 6776 9
Q ss_pred ceecCcc
Q psy3672 158 SCQQSCD 164 (178)
Q Consensus 158 ~~fep~~ 164 (178)
+||||||
T Consensus 267 ~lfEPvH 273 (348)
T COG0473 267 ALFEPVH 273 (348)
T ss_pred ceeecCC
Confidence 9999998
No 2
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=5.8e-48 Score=344.63 Aligned_cols=138 Identities=37% Similarity=0.483 Sum_probs=131.4
Q ss_pred eeecceeccc-ceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEE
Q psy3672 3 LYLLDRLRQL-SVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMI 81 (178)
Q Consensus 3 ~~~~~~~~~~-~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~ 81 (178)
+|++.+.+.. +++.+++++|++++|||+|+||+||++|+||+||++||+||||.+||+|+++|+|++++||+|++++++
T Consensus 146 ~Y~g~~~~~~~g~~~~~~v~Tr~~~eRIar~AF~~A~~r~rkkVt~v~KaNvl~~t~glf~~~~~eva~eyPdV~~~~~~ 225 (360)
T PLN00123 146 EYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVAKKYPGIKYNEII 225 (360)
T ss_pred eeccceeecCCCceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccccchhhHHHHHHHHHHhhCCCceEeeee
Confidence 6888876643 589999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred EeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCCceec
Q psy3672 82 TGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTGSCQQ 161 (178)
Q Consensus 82 v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~~~fe 161 (178)
+ |+++||||++|++||||||+|||||||||++|+++||+||+||+| +|+.++|||
T Consensus 226 V----------------------Da~~~~Lv~~P~~fDViVt~NlfGDILSDlaa~l~GglGl~pSan---ig~~~a~FE 280 (360)
T PLN00123 226 V----------------------DNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGN---VGADHAVFE 280 (360)
T ss_pred H----------------------HHHHHHHhhCcccCcEEEEcCcccchhhhHHHHhcCCcCccceEe---eCCCceEEE
Confidence 9 999999999999999999999999999999999999999999999 788899999
Q ss_pred Cccc
Q psy3672 162 SCDM 165 (178)
Q Consensus 162 p~~~ 165 (178)
|+|.
T Consensus 281 pvh~ 284 (360)
T PLN00123 281 QGAS 284 (360)
T ss_pred eccc
Confidence 9983
No 3
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=9.8e-48 Score=340.53 Aligned_cols=139 Identities=34% Similarity=0.399 Sum_probs=130.9
Q ss_pred eeecceecc---cceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEE
Q psy3672 3 LYLLDRLRQ---LSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRK 79 (178)
Q Consensus 3 ~~~~~~~~~---~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~ 79 (178)
+|++.+.+. ..++.+++++|++++|||+|+||++|++|+|++||++||+||||.|||+|+++|+|++++||+|++++
T Consensus 123 ~Y~g~~~~~~~~~~~a~~~~~~Tr~~~eRi~r~Af~~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~yP~V~~~~ 202 (334)
T PRK08997 123 MYSGEGQTVSEDGETAEATSIITRKGAERIVRFAYELARKEGRKKVTAVHKANIMKSTSGLFLKVAREVALRYPDIEFEE 202 (334)
T ss_pred eecCccceecCCCceEEEEEEeeHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcchhhhHHHHHHHHHHHhhCCCeEEEe
Confidence 688885432 23899999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEEeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCCce
Q psy3672 80 MITGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTGSC 159 (178)
Q Consensus 80 ~~v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~~~ 159 (178)
+++ |+++|||+++|++||||||+|||||||||++|+++||+||+||+| +|+..++
T Consensus 203 ~~v----------------------Da~~~~lv~~P~~fdVivt~NlfGDILSDlaa~l~GglGl~psan---ig~~~a~ 257 (334)
T PRK08997 203 MIV----------------------DATCMQLVMNPEQFDVIVTTNLFGDILSDLCAGLVGGLGMAPGAN---IGRDAAI 257 (334)
T ss_pred eeH----------------------HHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCCCCcCccee---ECCCceE
Confidence 999 999999999999999999999999999999999999999999999 7888999
Q ss_pred ecCccccc
Q psy3672 160 QQSCDMVS 167 (178)
Q Consensus 160 fep~~~~~ 167 (178)
|||+| |+
T Consensus 258 FEp~H-GS 264 (334)
T PRK08997 258 FEAVH-GS 264 (334)
T ss_pred EECCC-Cc
Confidence 99999 54
No 4
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=1e-47 Score=341.53 Aligned_cols=142 Identities=23% Similarity=0.233 Sum_probs=129.0
Q ss_pred eeecceec-----ccceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEE
Q psy3672 3 LYLLDRLR-----QLSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTN 77 (178)
Q Consensus 3 ~~~~~~~~-----~~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~ 77 (178)
+|++.+.+ ..+++++++++|+++++||+|+||++|++|+|++||++||+|||+.|+|+|+++|+|++++||+|++
T Consensus 134 ~Y~g~~~~~~~~~~~~~a~~~~~~Tr~~~~RIa~~AF~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~ 213 (344)
T PRK03437 134 PYTGNGGALRVGTPHEVATEVSVNTAFGVERVVRDAFERAQKRPRKHLTLVHKTNVLTFAGDLWQRTVDEVAAEYPDVTV 213 (344)
T ss_pred cccCCcccccCCCcceeEEEEEEecHHHHHHHHHHHHHHHHhCCCCeEEEEECCccccccchHHHHHHHHHHhhCCCceE
Confidence 58886422 3468999999999999999999999999998889999999999999999999999999999999999
Q ss_pred EEEEEeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCC
Q psy3672 78 RKMITGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTG 157 (178)
Q Consensus 78 ~~~~v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~ 157 (178)
+++++ |+++||||++|++||||||+|||||||||++|+++||+|++||+|+++-|..+
T Consensus 214 ~~~~v----------------------Da~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pSanig~~g~~~ 271 (344)
T PRK03437 214 DYQHV----------------------DAATIFMVTDPSRFDVIVTDNLFGDIITDLAAAVTGGIGLAASGNINPTGTNP 271 (344)
T ss_pred eehhH----------------------HHHHHHHhcCcccCcEEEEcccchhhhhHHHHHhcCCccccceeeecCCCCcc
Confidence 99999 99999999999999999999999999999999999999999999943212334
Q ss_pred ceecCccccc
Q psy3672 158 SCQQSCDMVS 167 (178)
Q Consensus 158 ~~fep~~~~~ 167 (178)
+||||+| |+
T Consensus 272 a~FEp~H-GS 280 (344)
T PRK03437 272 SMFEPVH-GS 280 (344)
T ss_pred eeEecCC-CC
Confidence 8999999 54
No 5
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-47 Score=338.51 Aligned_cols=139 Identities=26% Similarity=0.269 Sum_probs=131.2
Q ss_pred eeecceecc-cceeeeEEeeecccccHHHHHHHHHHHhC----CCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEE
Q psy3672 3 LYLLDRLRQ-LSVCDKVSLRYEETIDPCPRFSYVQDLLS----NRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTN 77 (178)
Q Consensus 3 ~~~~~~~~~-~~~~~~~~~~t~~~~eRiar~AFe~A~~~----~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~ 77 (178)
+|++.+.+. .+++.+++++|+++++||+|+||++|++| +||+||++||+||||.|||+|+++|+|++++||+|++
T Consensus 118 ~Y~g~~~~~~~~~~~~~~~~Tr~~~~Ri~r~Af~~A~~r~~~~~~k~Vt~v~KaNvl~~t~glf~e~~~eva~~yp~i~~ 197 (330)
T PRK14025 118 LYKGIEAEIADGVTVATRVITRKASERIFRFAFEMAKRRKKMGKEGKVTCAHKANVLKKTDGLFKKTFYEVAKEYPDIKA 197 (330)
T ss_pred eecCcccccCCCceEEeEeccHHHHHHHHHHHHHHHHhccccCCCCeEEEEECCCchhhhhHHHHHHHHHHHhhCCCeEE
Confidence 688876553 46899999999999999999999999999 6788999999999999999999999999999999999
Q ss_pred EEEEEeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCC
Q psy3672 78 RKMITGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTG 157 (178)
Q Consensus 78 ~~~~v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~ 157 (178)
+++++ |+++|+||++|++||||||+|||||||||++|+++||+||+||+| +|+.+
T Consensus 198 ~~~~v----------------------Da~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GglGl~psan---ig~~~ 252 (330)
T PRK14025 198 EDYYV----------------------DAMNMYIITRPQTFDVVVTSNLFGDILSDGAAGLVGGLGLAPSAN---IGDKY 252 (330)
T ss_pred EeeeH----------------------HHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcCCCCccccee---eCCCc
Confidence 99999 999999999999999999999999999999999999999999999 78889
Q ss_pred ceecCccccc
Q psy3672 158 SCQQSCDMVS 167 (178)
Q Consensus 158 ~~fep~~~~~ 167 (178)
+||||+| |+
T Consensus 253 a~FEp~H-GS 261 (330)
T PRK14025 253 GLFEPVH-GS 261 (330)
T ss_pred ceeEcCC-CC
Confidence 9999999 54
No 6
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=9.9e-47 Score=337.97 Aligned_cols=139 Identities=30% Similarity=0.425 Sum_probs=130.7
Q ss_pred eeecceecc-cceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEE
Q psy3672 3 LYLLDRLRQ-LSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMI 81 (178)
Q Consensus 3 ~~~~~~~~~-~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~ 81 (178)
+|++.+.+. .+++.+++++|++++|||+|+||+||++|+||+||++||+||||.|||+|+++|+|++++||+|++++++
T Consensus 162 ~Y~g~~~~~~~gv~~~~~v~Tr~~~eRIar~AF~~A~~r~~k~Vt~v~KaNvlk~tdglf~e~~~eva~eyPdI~~~~~~ 241 (372)
T PLN00118 162 EYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRKRVSAIHKANIMKKTDGLFLKCCREVAEKYPEIVYEEVI 241 (372)
T ss_pred cccceeeeccCCeEEEEEecCHHHHHHHHHHHHHHHHHcCCCeEEEEECCccchhhhHHHHHHHHHHHhhCCCceEEeee
Confidence 688876543 3589999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred EeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCC-Ccee
Q psy3672 82 TGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRT-GSCQ 160 (178)
Q Consensus 82 v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~-~~~f 160 (178)
+ |+++||||++|++||||||+|||||||||++|+++||+||+||+| +|+. .+||
T Consensus 242 V----------------------Da~a~~Lv~~P~~fDViVt~NLfGDILSDlaa~l~GglGlapSan---ig~~~~a~F 296 (372)
T PLN00118 242 I----------------------DNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCN---IGENGLALA 296 (372)
T ss_pred H----------------------HHHHHHhccCcccCcEEEEcCcccchhhHHHHHhcCCcccCccee---ecCCCCeEE
Confidence 9 999999999999999999999999999999999999999999999 7777 6999
Q ss_pred cCccccc
Q psy3672 161 QSCDMVS 167 (178)
Q Consensus 161 ep~~~~~ 167 (178)
||+| |+
T Consensus 297 EpvH-GS 302 (372)
T PLN00118 297 EAVH-GS 302 (372)
T ss_pred ECCC-CC
Confidence 9999 44
No 7
>PRK09222 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=9.2e-47 Score=346.85 Aligned_cols=139 Identities=31% Similarity=0.366 Sum_probs=133.1
Q ss_pred eeecceeccc-ceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEE
Q psy3672 3 LYLLDRLRQL-SVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMI 81 (178)
Q Consensus 3 ~~~~~~~~~~-~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~ 81 (178)
+|++.+.++. +++.+++++|++++|||+|+||+||++|+||+||++||+||||.|||+|+++|+|++++||+|++++++
T Consensus 127 ~Y~G~e~~~~~~~~~~~k~iTr~~~eRI~r~AFe~A~~r~rkkVt~v~KaNVmk~tdglf~~v~~eva~eyPdI~~~~~~ 206 (482)
T PRK09222 127 LYAGIEHRQTPDVYQCLKLISRPGSEKIIRYAFEYARANGRKKVTCLTKDNIMKLTDGLFHKVFDEIAKEYPDIEAEHYI 206 (482)
T ss_pred eeccceeecCCCeeeEeeccCHHHHHHHHHHHHHHHHhcCCCeEEEEECCCcccccchHHHHHHHHHHhhCCCceEeeee
Confidence 6999877654 689999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred EeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCCceec
Q psy3672 82 TGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTGSCQQ 161 (178)
Q Consensus 82 v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~~~fe 161 (178)
+ |+++|+|+++|++||||||+|||||||||++|+++||+||+||+| +|+.++|||
T Consensus 207 V----------------------Da~a~~Lv~~P~~FDVIVt~NLfGDILSDlaa~l~GslGlapSan---ig~~~amFE 261 (482)
T PRK09222 207 V----------------------DIGAARLATNPENFDVIVTPNLYGDILSDIAAEISGSVGLAGSAN---IGEEYAMFE 261 (482)
T ss_pred H----------------------HHHHHHHhcCcccceEEEEcccccchhhHHHHHhcCCccccccee---cCCCceeeE
Confidence 9 999999999999999999999999999999999999999999999 788899999
Q ss_pred Cccccc
Q psy3672 162 SCDMVS 167 (178)
Q Consensus 162 p~~~~~ 167 (178)
|+| |+
T Consensus 262 pvH-GS 266 (482)
T PRK09222 262 AVH-GS 266 (482)
T ss_pred CCC-CC
Confidence 999 54
No 8
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=100.00 E-value=1.1e-46 Score=335.79 Aligned_cols=138 Identities=21% Similarity=0.191 Sum_probs=128.0
Q ss_pred eeecceec-----ccceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEE
Q psy3672 3 LYLLDRLR-----QLSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTN 77 (178)
Q Consensus 3 ~~~~~~~~-----~~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~ 77 (178)
+|+|.+.+ ..+++++++++|++++|||+|+||++|++| |++||++||+|||+.|+|+|+++|+|++++||+|++
T Consensus 138 ~Y~G~~~~~~~~~~~~~a~~~~~~tr~~~eRi~r~Af~~A~~r-r~kVt~v~KaNvl~~t~~lf~~~~~eva~~yp~v~~ 216 (352)
T TIGR02089 138 EYSGVGGRIHRGTDEEVATQNAIFTRKGVERIMRFAFELAQKR-RKHLTSATKSNGIRHSMPFWDEVFAEVAAEYPDVEW 216 (352)
T ss_pred ccccccccccCCccceeEEEeEEecHHHHHHHHHHHHHHHHHc-CCCEEEEeCCcchhhhhHHHHHHHHHHHhhCCCceE
Confidence 68887533 236899999999999999999999999998 889999999999999999999999999999999999
Q ss_pred EEEEEeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCC-
Q psy3672 78 RKMITGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRT- 156 (178)
Q Consensus 78 ~~~~v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~- 156 (178)
+++++ |+++||||++|++||||||+|||||||||++|+++||+||+||+| +|+.
T Consensus 217 ~~~~v----------------------D~~~~~lv~~P~~fDVivt~NlfGDILSD~aa~l~GglGl~psan---ig~~~ 271 (352)
T TIGR02089 217 DSYHI----------------------DALAARFVLKPETFDVIVASNLFGDILSDLGAALMGSLGVAPSAN---INPEG 271 (352)
T ss_pred eeehH----------------------HHHHHHHhcChhhCcEEEecccchhhhhHHHHHhcCCccccceEE---ecCCC
Confidence 99999 999999999999999999999999999999999999999999999 5543
Q ss_pred --CceecCccccc
Q psy3672 157 --GSCQQSCDMVS 167 (178)
Q Consensus 157 --~~~fep~~~~~ 167 (178)
.++|||+| |+
T Consensus 272 ~~~a~fEp~H-GS 283 (352)
T TIGR02089 272 KFPSMFEPVH-GS 283 (352)
T ss_pred CcceeeecCC-CC
Confidence 38999999 54
No 9
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=100.00 E-value=1.5e-46 Score=332.78 Aligned_cols=140 Identities=40% Similarity=0.482 Sum_probs=131.5
Q ss_pred eeecceecc-cceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEE
Q psy3672 3 LYLLDRLRQ-LSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMI 81 (178)
Q Consensus 3 ~~~~~~~~~-~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~ 81 (178)
+|++.+.+. .+++.+++++|+++++||+|+||++|++|++|+||++||+||||.|||+|+++++|++++||+|++++++
T Consensus 123 ~Y~g~~~~~~~~~~~~~~~~Tr~~~eRi~r~Af~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva~~yp~v~~~~~~ 202 (333)
T TIGR00175 123 EYSGLEHESVPGVVESLKVITRDKSERIARYAFEYARKNGRKKVTAVHKANIMKLADGLFLNVCREVAKEYPDITFESMI 202 (333)
T ss_pred cccceeEeccCCeEEEEEecCHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhHHHHHHHHHHHHHHCCCCeeeeee
Confidence 688876553 3589999999999999999999999999987889999999999999999999999999999999999999
Q ss_pred EeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCCceec
Q psy3672 82 TGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTGSCQQ 161 (178)
Q Consensus 82 v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~~~fe 161 (178)
+ |+++|+||++|++||||||+|||||||||++|+++||+||+||+| +|+.+++||
T Consensus 203 v----------------------Da~~~~lv~~P~~fdViVt~NlfGDILSDlaa~l~GslGl~pSan---ig~~~a~fE 257 (333)
T TIGR00175 203 V----------------------DNTCMQLVSRPSQFDVMVMPNLYGNILSNLGAGLVGGPGLVPGAN---IGRDYAVFE 257 (333)
T ss_pred H----------------------HHHHHHHhcCcccccEEEEccccchhhhHHHHHhcCCcccCceeE---EcCCCceEe
Confidence 9 999999999999999999999999999999999999999999999 788899999
Q ss_pred Cccccc
Q psy3672 162 SCDMVS 167 (178)
Q Consensus 162 p~~~~~ 167 (178)
|++=|+
T Consensus 258 p~~hGS 263 (333)
T TIGR00175 258 PGVRHT 263 (333)
T ss_pred ccCCCC
Confidence 987554
No 10
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=100.00 E-value=8.8e-47 Score=346.23 Aligned_cols=139 Identities=28% Similarity=0.342 Sum_probs=132.8
Q ss_pred eeecceeccc-ceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEE
Q psy3672 3 LYLLDRLRQL-SVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMI 81 (178)
Q Consensus 3 ~~~~~~~~~~-~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~ 81 (178)
+|+|.+.++. +++.+++++|++++|||+|+||+||++|+||+||++||+||||.|||+|+++|+|++++||+|++++++
T Consensus 123 lY~G~e~~~~~~~~~~~kviTr~g~eRI~r~AFe~A~~r~rkkVT~v~KaNVmk~tdglf~e~~~eva~eyPdI~~e~~~ 202 (473)
T TIGR02924 123 LYTGIEYRQTPDTYECTKLITRSGSEKICRYAFEYARKHNRKKVTCLTKDNIMKMTDGIFHKIFDKIAAEYPDIESEHYI 202 (473)
T ss_pred eecCceeeccCChheEeEecCHHHHHHHHHHHHHHHHhcCCCeEEEEECCccccccchhHHHHHHHHHhhCCCcEEeeHH
Confidence 6999877654 589999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred EeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCCceec
Q psy3672 82 TGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTGSCQQ 161 (178)
Q Consensus 82 v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~~~fe 161 (178)
+ |+++|+|+++|++||||||+|||||||||++|+++||+||+||+| +|+.++|||
T Consensus 203 V----------------------Da~a~~Lv~~P~~FDVIVt~NLfGDILSDlaA~l~GslGlapSaN---iG~~~amFE 257 (473)
T TIGR02924 203 V----------------------DIGMARLATNPENFDVIVTPNLYGDILSDVAAEISGSVGLAGSAN---IGEEYAMFE 257 (473)
T ss_pred H----------------------HHHHHHHhhCcccceEEEEccccchhhhHHHHHhcCCcCccccee---cCCCcceee
Confidence 9 999999999999999999999999999999999999999999999 788899999
Q ss_pred Cccccc
Q psy3672 162 SCDMVS 167 (178)
Q Consensus 162 p~~~~~ 167 (178)
|+| |+
T Consensus 258 pvH-GS 262 (473)
T TIGR02924 258 AVH-GS 262 (473)
T ss_pred cCC-Cc
Confidence 999 54
No 11
>PRK08194 tartrate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-46 Score=335.85 Aligned_cols=141 Identities=19% Similarity=0.170 Sum_probs=127.5
Q ss_pred eeecceec----ccceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEE
Q psy3672 3 LYLLDRLR----QLSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNR 78 (178)
Q Consensus 3 ~~~~~~~~----~~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~ 78 (178)
+|++.+.+ ..+++++++++|++++|||+|+||++|++| +++||++||+|||+.|+|+|+++++|++++||+|+++
T Consensus 136 ~Y~g~~~~~~~g~~~~a~~~~~~Tr~~~eRI~r~Af~~A~~r-~~~Vt~v~KaNvl~~t~~lf~~~~~eva~~yp~V~~~ 214 (352)
T PRK08194 136 EYSEVGGRIHRGEDEIAIQNAVFTRKGTERAMRYAFELAAKR-RKHVTSATKSNGIVHSMPFWDEVFQEVGKDYPEIETD 214 (352)
T ss_pred cccCCCccccCCccceEEEEEEeeHHHHHHHHHHHHHHHHHc-CCcEEEEeCcchhhhhHHHHHHHHHHHHhhCCCceee
Confidence 68876422 236899999999999999999999999998 7789999999999999999999999999999999999
Q ss_pred EEEEeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCCc
Q psy3672 79 KMITGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTGS 158 (178)
Q Consensus 79 ~~~v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~~ 158 (178)
++++ |+++||||++|++||||||+|||||||||++|+++||+||+||+|+++-|+..+
T Consensus 215 ~~~v----------------------Da~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GslGl~pSanig~~~~~~a 272 (352)
T PRK08194 215 SQHI----------------------DALAAFFVTRPEEFDVIVASNLFGDILTDIGAAIMGSIGIAPAANINVNGKYPS 272 (352)
T ss_pred ehhH----------------------HHHHHHHhhChhhCcEEEEccchHHHHhHHHHHhcCCccccceeeecCCCCcce
Confidence 9999 999999999999999999999999999999999999999999999432222348
Q ss_pred eecCccccc
Q psy3672 159 CQQSCDMVS 167 (178)
Q Consensus 159 ~fep~~~~~ 167 (178)
+|||+| |+
T Consensus 273 lFEp~H-GS 280 (352)
T PRK08194 273 MFEPVH-GS 280 (352)
T ss_pred EEECCC-CC
Confidence 999999 54
No 12
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=100.00 E-value=4.1e-46 Score=328.79 Aligned_cols=137 Identities=28% Similarity=0.349 Sum_probs=129.8
Q ss_pred eeecceecccceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEEE
Q psy3672 3 LYLLDRLRQLSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMIT 82 (178)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v 82 (178)
+|++...+..+++.+++++|++++|||+|+||++|++|+| +||++||+||||.|+|+|+++|+|++++|| |+++++++
T Consensus 120 ~Y~g~~~~~~~~a~~~~~~tr~~~eRi~r~AF~~A~~r~~-~Vt~v~KaNvl~~t~glf~~~~~eva~~yp-v~~~~~~v 197 (322)
T TIGR02088 120 LYAGFEFGFSDRAIAIRVITREGSERIARFAFNLAKERNR-KVTCVHKANVLKGTDGLFREVCREIAKRYG-VEYRDMYV 197 (322)
T ss_pred eeeccccccCcceEEEEEecHHHHHHHHHHHHHHHHHcCC-cEEEEeCCcchhhhHHHHHHHHHHHHHhCC-eeeeeeeH
Confidence 6888876666789999999999999999999999999865 599999999999999999999999999999 99999999
Q ss_pred eeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCCceecC
Q psy3672 83 GFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTGSCQQS 162 (178)
Q Consensus 83 ~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~~~fep 162 (178)
|+++|+||++|++||||||+|||||||||++|+++||+||+||+| +|+.++||||
T Consensus 198 ----------------------Da~~~~lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSan---ig~~~a~fep 252 (322)
T TIGR02088 198 ----------------------DSAAMNLVKDPWRFDVIVTTNMFGDILSDLASALAGSLGLAPSAN---IGDRKALFEP 252 (322)
T ss_pred ----------------------HHHHHHHhhCCcCceEEEecCcccchhhHHHHhhcCCCCCCceeE---EcCCceEEec
Confidence 999999999999999999999999999999999999999999999 7888999999
Q ss_pred ccccc
Q psy3672 163 CDMVS 167 (178)
Q Consensus 163 ~~~~~ 167 (178)
+| |+
T Consensus 253 ~h-Gs 256 (322)
T TIGR02088 253 VH-GS 256 (322)
T ss_pred CC-CC
Confidence 99 44
No 13
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=100.00 E-value=7.1e-46 Score=330.22 Aligned_cols=137 Identities=23% Similarity=0.228 Sum_probs=126.9
Q ss_pred eeecceecc-----cceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEE
Q psy3672 3 LYLLDRLRQ-----LSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTN 77 (178)
Q Consensus 3 ~~~~~~~~~-----~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~ 77 (178)
+|.+.+.+. .+++++++++|++++|||+|+||+||++|+ ++||++||+|||| ++|+|+++|+|++++||+|++
T Consensus 137 ~Y~g~~~~~~~~~~~~~a~~~~~~Tr~~~eRI~r~AF~~A~~r~-~~Vt~v~KaNvlk-t~glf~~~~~eva~~yP~I~~ 214 (349)
T TIGR00169 137 IYFGEPKGRFGAGGEGEAWDTEVYTKPEIERIARVAFEMARKRR-KKVTSVDKANVLE-SSRLWRKTVEEIAKEYPDVEL 214 (349)
T ss_pred eecCCCccccCCCCcceEEEEEEeeHHHHHHHHHHHHHHHHHcC-CcEEEEECCcccc-hhHHHHHHHHHHHhhCCCceE
Confidence 577765421 368999999999999999999999999985 4999999999999 999999999999999999999
Q ss_pred EEEEEeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCC-C
Q psy3672 78 RKMITGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISR-T 156 (178)
Q Consensus 78 ~~~~v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~-~ 156 (178)
+++++ |+++++||++|++||||||+|||||||||++|+++||+|++||+| +|+ .
T Consensus 215 ~~~~v----------------------Da~~~~Lv~~P~~fDViv~~NlfGDILSDlaa~l~GglGlapSan---ig~~~ 269 (349)
T TIGR00169 215 EHQYI----------------------DNAAMQLVKSPTQFDVVVTGNIFGDILSDEASVIPGSLGMLPSAS---LGSDG 269 (349)
T ss_pred EeeeH----------------------HHHHHHHHhCccCceEEEEcCcccchhhHHHHHhcCCCCCCceEE---ECCCC
Confidence 99999 999999999999999999999999999999999999999999999 774 4
Q ss_pred CceecCccccc
Q psy3672 157 GSCQQSCDMVS 167 (178)
Q Consensus 157 ~~~fep~~~~~ 167 (178)
.+||||+| |+
T Consensus 270 ~a~FEp~H-GS 279 (349)
T TIGR00169 270 FGLFEPVH-GS 279 (349)
T ss_pred CEEEECCC-CC
Confidence 79999999 54
No 14
>PLN02329 3-isopropylmalate dehydrogenase
Probab=100.00 E-value=3.9e-46 Score=337.31 Aligned_cols=137 Identities=20% Similarity=0.215 Sum_probs=127.3
Q ss_pred eeecceec------ccceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeE
Q psy3672 3 LYLLDRLR------QLSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWT 76 (178)
Q Consensus 3 ~~~~~~~~------~~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~ 76 (178)
+|++.+.+ ..+++.+++++|++++|||+|+||++|++|+ ++||++||+|||+ ++|+|+++|+|++++||+|+
T Consensus 184 ~Y~G~~~~~~~~~~~~~~a~~~~~iTr~~~eRI~r~AFe~A~~r~-~kVT~v~KaNVl~-t~~lf~~~~~evA~eyPdV~ 261 (409)
T PLN02329 184 IYFGEPRGITINENGEEVGVSTEIYAAHEIDRIARVAFETARKRR-GKLCSVDKANVLD-ASILWRKRVTALASEYPDVE 261 (409)
T ss_pred eecCCCcceecccCCceeEEEeEEecHHHHHHHHHHHHHHHHHcC-CeEEEEECCCCcc-chHHHHHHHHHHHhhCCCcc
Confidence 68886422 2468999999999999999999999999984 6999999999999 99999999999999999999
Q ss_pred EEEEEEeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCC
Q psy3672 77 NRKMITGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRT 156 (178)
Q Consensus 77 ~~~~~v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~ 156 (178)
++++++ |+++||||++|++||||||+|||||||||++|+++||+||+||+| +|+.
T Consensus 262 ~~~~~V----------------------Da~a~~LV~~P~~FDVIVt~NLfGDILSDlaa~l~GglGlaPSan---ig~~ 316 (409)
T PLN02329 262 LSHMYV----------------------DNAAMQLIRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSAS---LGES 316 (409)
T ss_pred cchhHH----------------------HHHHHHHhcCchhCCEEEEcCcccccccHHHHHhcCCcccCceee---cCCC
Confidence 999999 999999999999999999999999999999999999999999999 7776
Q ss_pred -CceecCccccc
Q psy3672 157 -GSCQQSCDMVS 167 (178)
Q Consensus 157 -~~~fep~~~~~ 167 (178)
.+||||+| |+
T Consensus 317 ~~a~FEpvH-GS 327 (409)
T PLN02329 317 GPGLFEPIH-GS 327 (409)
T ss_pred CceeeeccC-CC
Confidence 58999999 54
No 15
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=100.00 E-value=6e-46 Score=336.38 Aligned_cols=129 Identities=22% Similarity=0.246 Sum_probs=120.9
Q ss_pred ceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHh-hC-------------------
Q psy3672 13 SVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAK-LY------------------- 72 (178)
Q Consensus 13 ~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~-eY------------------- 72 (178)
+++++++++|++++|||+|+||+||++|+||+||++||+||||+|||+|++|+.|+++ +|
T Consensus 186 ~~a~~~~v~Tr~~~eRi~r~AFe~A~~r~rkkVt~v~KaNVlk~tdglf~~~~~eva~~ey~~~~~~~~~~~~~~~~~~~ 265 (409)
T PRK07006 186 TSGIGIKPVSEEGTERLVRAAIEYAIDNDRKSVTLVHKGNIMKFTEGAFKDWGYQLAEEEFGDELIDGGPWDKIKNPETG 265 (409)
T ss_pred cceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchHHHHHHHHHHHHHHhhhhhhccccccccccccCC
Confidence 4678999999999999999999999999888999999999999999999999889998 78
Q ss_pred CCeEEEEEEEeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccc
Q psy3672 73 PVWTNRKMITGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSV 152 (178)
Q Consensus 73 pdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ 152 (178)
|+|+++++++ |+++||||++|++||||||+|||||||||++|+++||+||+||+|
T Consensus 266 p~v~~~~~~v----------------------Da~~~~lv~~P~~fDVIvt~NlfGDILSDlaa~l~GglGlapSan--- 320 (409)
T PRK07006 266 KEIIVKDSIA----------------------DAFLQQILLRPAEYDVIATMNLNGDYISDALAAQVGGIGIAPGAN--- 320 (409)
T ss_pred CCceeehHHH----------------------HHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcccce---
Confidence 6777777776 999999999999999999999999999999999999999999999
Q ss_pred cCCCCceecCccccc
Q psy3672 153 ISRTGSCQQSCDMVS 167 (178)
Q Consensus 153 ig~~~~~fep~~~~~ 167 (178)
+|+..+||||+| |+
T Consensus 321 ig~~~a~FEpvH-GS 334 (409)
T PRK07006 321 INDGHAIFEATH-GT 334 (409)
T ss_pred eCCCceEEECCC-Cc
Confidence 778789999999 54
No 16
>PRK06451 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1.6e-45 Score=333.79 Aligned_cols=146 Identities=21% Similarity=0.185 Sum_probs=124.6
Q ss_pred ceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHh-hCCCeEEEEEEEeeeeccccc
Q psy3672 13 SVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAK-LYPVWTNRKMITGFIWTTRDI 91 (178)
Q Consensus 13 ~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~-eYpdv~~~~~~v~~~~~~~~~ 91 (178)
+++.+++++|+.+++||+|+||+||++|+||+||++||+||||.|||+|+++++|+++ +||+..+.+..+ ..+|++
T Consensus 185 ~~a~~~~~~t~~~~eRIar~AF~~A~~r~~kkVt~v~KaNVlk~t~glf~~~~~eva~~eypd~~~~~~~~---~~~y~~ 261 (412)
T PRK06451 185 DTGIGIKLISKFKTQRIARMAIKYAIDHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEFRDYVVTEEEV---TKNYNG 261 (412)
T ss_pred ceecceeeeeHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchhhHHHHHHHHHHHhCCcccccccch---hhcccc
Confidence 5788999999999999999999999999888999999999999999999999999997 899733322222 112322
Q ss_pred cc---eeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCCceecCccccc
Q psy3672 92 NV---FIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTGSCQQSCDMVS 167 (178)
Q Consensus 92 ~~---~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~~~fep~~~~~ 167 (178)
+. .|.+++.++ |+++||||++|++||||||+|||||||||++|+++||+||+||+| +|+.+++|||+| |+
T Consensus 262 ~~~~~~I~~~~~~v--Da~~~~Lv~~P~~FDVivt~NlfGDILSDlaa~l~GglGl~pSan---ig~~~alFEpvH-GS 334 (412)
T PRK06451 262 VPPSGKVIINDRIA--DNMFQQIIIRPDEYDIILAPNVNGDYISDAAGALVGNIGMLGGAN---IGDTGGMFEAIH-GT 334 (412)
T ss_pred ccccCceEEEeeeH--HHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcCchhhcceee---eCCCCceeECCC-CC
Confidence 22 244445544 999999999999999999999999999999999999999999999 788899999999 44
No 17
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type. Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.
Probab=100.00 E-value=7.3e-45 Score=329.91 Aligned_cols=130 Identities=24% Similarity=0.244 Sum_probs=122.1
Q ss_pred cceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHh-hC------------------
Q psy3672 12 LSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAK-LY------------------ 72 (178)
Q Consensus 12 ~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~-eY------------------ 72 (178)
.+++.+++++|+++++||+|+||++|++|+|++||++||+||||.|||+|++|+.|+++ +|
T Consensus 192 ~~~a~~~~~~tr~~~~Riar~AFe~A~~r~rk~Vt~v~KaNvlk~tdglf~e~~~eva~~ey~~~~~~~~lw~~~~~p~~ 271 (416)
T TIGR00183 192 EDSGIGIKPISEEGTKRLVRAAIEYAIENDRKSVTLVHKGNIMKFTEGAFRDWGYELAKKEFGAECITWGLWDKYKNPNP 271 (416)
T ss_pred cccEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccchhhHHHHHHHHHHHHHhHhhhhccccccccCccc
Confidence 45788999999999999999999999999888999999999999999999999999998 68
Q ss_pred -CCeEEEEEEEeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCcccc
Q psy3672 73 -PVWTNRKMITGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDS 151 (178)
Q Consensus 73 -pdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~ 151 (178)
|+|+++++++ |+++||||++|++||||||+|||||||||++|+++||+||+||+|
T Consensus 272 ~p~I~~~~~~v----------------------Da~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GslGlapSan-- 327 (416)
T TIGR00183 272 GKEIVIKDRIA----------------------DAFLQQILTRPDEYDVIATMNLNGDYISDALAAQVGGIGIAPGAN-- 327 (416)
T ss_pred CCceeEeehhH----------------------HHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcceee--
Confidence 3788888887 999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceecCccccc
Q psy3672 152 VISRTGSCQQSCDMVS 167 (178)
Q Consensus 152 ~ig~~~~~fep~~~~~ 167 (178)
+|+..++|||+| |+
T Consensus 328 -ig~~~alFEp~H-GS 341 (416)
T TIGR00183 328 -IGDEIGIFEATH-GT 341 (416)
T ss_pred -eCCCceEEECCC-CC
Confidence 778899999999 54
No 18
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-44 Score=321.24 Aligned_cols=137 Identities=27% Similarity=0.273 Sum_probs=127.0
Q ss_pred eeecceec-----ccceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEE
Q psy3672 3 LYLLDRLR-----QLSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTN 77 (178)
Q Consensus 3 ~~~~~~~~-----~~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~ 77 (178)
+|.+.+.+ ..+++.+++++|+++++||+|+||+||++| +++||++||+|+|| ++|+|+++|+|++++||+|++
T Consensus 140 ~Y~g~~~~~~~~~~~~~a~~~~~iTr~~~~Ri~r~Af~~A~~r-~~~Vt~v~KaNvl~-~~glf~~~~~eva~eyp~i~~ 217 (358)
T PRK00772 140 IYFGEPRGREGLGGEERAFDTMVYTREEIERIARVAFELARKR-RKKVTSVDKANVLE-SSRLWREVVTEVAKEYPDVEL 217 (358)
T ss_pred eecCCcccccCCCCceeEEEEEEeeHHHHHHHHHHHHHHHHHc-CCcEEEEECccccc-cchHHHHHHHHHHhHCCCceE
Confidence 57776433 245899999999999999999999999998 46999999999999 899999999999999999999
Q ss_pred EEEEEeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCC-
Q psy3672 78 RKMITGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRT- 156 (178)
Q Consensus 78 ~~~~v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~- 156 (178)
+++++ |+++|+|+++|++||||||+|||||||||++|+++||+||+||+| +|+.
T Consensus 218 ~~~~v----------------------Da~~~~lv~~P~~fDViv~~NlfGDIlSDlaa~l~GglGl~psan---ig~~~ 272 (358)
T PRK00772 218 SHMYV----------------------DNAAMQLVRNPKQFDVIVTENLFGDILSDEAAMLTGSLGMLPSAS---LGESG 272 (358)
T ss_pred EEEeH----------------------HHHHHHHhhCcccCeEEeecCcccccccHHHHHhcCCCCCCcceE---eCCCC
Confidence 99999 999999999999999999999999999999999999999999999 7766
Q ss_pred CceecCccccc
Q psy3672 157 GSCQQSCDMVS 167 (178)
Q Consensus 157 ~~~fep~~~~~ 167 (178)
.++|||+| |+
T Consensus 273 ~a~FEp~H-GS 282 (358)
T PRK00772 273 PGLYEPIH-GS 282 (358)
T ss_pred ceeeecCC-Cc
Confidence 59999999 54
No 19
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=100.00 E-value=7.2e-45 Score=322.82 Aligned_cols=136 Identities=32% Similarity=0.384 Sum_probs=129.2
Q ss_pred eeecceecccc------eeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHh-hCCCe
Q psy3672 3 LYLLDRLRQLS------VCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAK-LYPVW 75 (178)
Q Consensus 3 ~~~~~~~~~~~------~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~-eYpdv 75 (178)
+|.+.+.+..+ ++.+++++|++++|||+|+||++|++|+||+||++||+|+|+.++ +|+++|+|+++ +||+|
T Consensus 133 ~Y~g~~~~~~~~~~~~~~a~~~~~~t~~~~eRi~r~AF~~A~~r~~k~Vt~v~KaNvl~~~~-lf~~~~~eva~~~yp~I 211 (348)
T PF00180_consen 133 LYSGIEHEIGDGGTPDEVAIDTKVITREGIERIARFAFEYARKRGRKKVTVVHKANVLKSTD-LFREVFQEVAKQEYPDI 211 (348)
T ss_dssp GGGEEEEEECSEEEGSSEEEEEEEEEHHHHHHHHHHHHHHHHHTTTSEEEEEESTTTSTTHH-HHHHHHHHHHHHTHTTS
T ss_pred cccCCCCceeeccCCCceEEEeeccccchhhHHHHHHHHHHHHhCCceEEEEeccchhHHHH-HHHHHHHHHHHhhccee
Confidence 46776666543 899999999999999999999999999999999999999999998 99999999999 99999
Q ss_pred EEEEEEEeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccC-
Q psy3672 76 TNRKMITGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVIS- 154 (178)
Q Consensus 76 ~~~~~~v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig- 154 (178)
+++++++ |+++|+|+++|++||||||+|||||||||++|+++||+||+||+| +|
T Consensus 212 ~~~~~~v----------------------D~~~~~Lv~~P~~fdViv~~Nl~GDIlSDl~a~l~G~lGl~psan---ig~ 266 (348)
T PF00180_consen 212 EVEHMLV----------------------DAAAMQLVKNPEQFDVIVTPNLFGDILSDLAAGLVGGLGLAPSAN---IGP 266 (348)
T ss_dssp EEEEEEH----------------------HHHHHHHHHSGGGESEEEEEHHHHHHHHHHHHHHHTSGGGEEEEE---EET
T ss_pred Eeeeeec----------------------hhhhheeecCCcceeEEeecchhHHHHHHHhhhcCCChhhhhhhc---cCc
Confidence 9999999 999999999999999999999999999999999999999999999 78
Q ss_pred CCCceecCcc
Q psy3672 155 RTGSCQQSCD 164 (178)
Q Consensus 155 ~~~~~fep~~ 164 (178)
+..++|||+|
T Consensus 267 ~~~a~fEp~H 276 (348)
T PF00180_consen 267 DGHAMFEPVH 276 (348)
T ss_dssp SSEEEEEESS
T ss_pred cccccccccc
Confidence 7899999998
No 20
>PRK07362 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=2.3e-43 Score=322.36 Aligned_cols=150 Identities=21% Similarity=0.208 Sum_probs=126.9
Q ss_pred cceeeeEEeeecccccHHHHHHHHHHHhC--CCCcEEEEeCCCccccccHHHHHHHHHHHh-------------------
Q psy3672 12 LSVCDKVSLRYEETIDPCPRFSYVQDLLS--NRKKVTAVHKANIMKLGDGLFLNSCKEMAK------------------- 70 (178)
Q Consensus 12 ~~~~~~~~~~t~~~~eRiar~AFe~A~~~--~rk~Vt~vhKaNvlk~tdglf~~i~~eva~------------------- 70 (178)
.+++++++++|+++++||+|+||+||++| +|++||+|||+||||+|+|+|++|+.|+++
T Consensus 199 ~~~a~~~k~iTr~g~eRI~r~AFe~A~~r~~~rkkVT~VhKaNVlk~t~glf~~~~~evA~~~~~~~~v~~~~~~~~~~~ 278 (474)
T PRK07362 199 LGSGIGIKPVSKTGSQRHIRRAIEHALRLPGDKRHVTLVHKGNIMKYTEGAFRDWGYELATTEFRDECVTERESWILSNK 278 (474)
T ss_pred cceeeeeeeccHHHHHHHHHHHHHHHHhcCCCCCeEEEEECCcccccchhHHHHHHHHHHHHhhhhhhhhhhhhhhhccc
Confidence 34788999999999999999999999998 478899999999999999999999989986
Q ss_pred -hCCCeEEE-------------------------EEEEeeeecc-ccccc--eeEEEeecccccHHHHHHhhCCCCCcEE
Q psy3672 71 -LYPVWTNR-------------------------KMITGFIWTT-RDINV--FIWTIRRIITVFNWTRQIVSNPHQFDVM 121 (178)
Q Consensus 71 -eYpdv~~~-------------------------~~~v~~~~~~-~~~~~--~i~~~~~~i~~Da~~~~LV~~P~~fDVi 121 (178)
+||+|+++ +...++.|.. +.+++ ++.+++.++ |+++|||+++|++||||
T Consensus 279 ~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v--Da~a~~lv~~P~~FDVI 356 (474)
T PRK07362 279 EKNPNISIEDNARMIEPGYDSLTPEKKAAICAEVKEVLDSIWSSHGNGKWKEKVLVDDRIA--DSIFQQIQTRPQEYSIL 356 (474)
T ss_pred ccCccccccccccccccccccccccccccccccccccccchhhccccccCCCcceeehHHH--HHHHHHHHhChhhCCEE
Confidence 35665541 0111233333 23333 577777777 99999999999999999
Q ss_pred EeeCCCcccccccccccccccccccCccccccCCCCceecCccccc
Q psy3672 122 VMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTGSCQQSCDMVS 167 (178)
Q Consensus 122 v~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~~~fep~~~~~ 167 (178)
||+|||||||||++|+++||+||+||+| +|+..+||||+| |+
T Consensus 357 Vt~NLfGDILSDlaA~lvGglGlaPSAN---iG~~~a~FEpvH-GS 398 (474)
T PRK07362 357 ATLNLNGDYISDAAAAIVGGLGMAPGAN---IGDNAAIFEATH-GT 398 (474)
T ss_pred EEccccchhhhHHHHHhcCCccccceee---eCCCceeeecCC-CC
Confidence 9999999999999999999999999999 788899999999 44
No 21
>KOG0785|consensus
Probab=100.00 E-value=3.4e-44 Score=314.57 Aligned_cols=136 Identities=32% Similarity=0.430 Sum_probs=128.0
Q ss_pred eecceecc-cceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEEE
Q psy3672 4 YLLDRLRQ-LSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMIT 82 (178)
Q Consensus 4 ~~~~~~~~-~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v 82 (178)
|-|.++.. ..|+++++++|+.+++|+++|||+||++++|++||++||+|||+.|||+|+++|+|++++||||+++++++
T Consensus 157 YsgiEh~vvpGVvqsiK~IT~~AS~Ria~~AF~yAr~~~R~~vtvvHKaNImr~tDGLFle~cre~a~~y~dI~~eE~~l 236 (365)
T KOG0785|consen 157 YSGIEHQVVPGVVQSIKLITEAASRRIAEYAFEYARQNGRKRVTVVHKANIMRMTDGLFLECCREVAKKYPDIKFEEQYL 236 (365)
T ss_pred cccceeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEehhhhhhhcchHHHHHHHHHhhhCCccchhHHHH
Confidence 55555542 24899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCCceecC
Q psy3672 83 GFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTGSCQQS 162 (178)
Q Consensus 83 ~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~~~fep 162 (178)
|++|++|+++|..|||+|+||||||||||+||+++||||+.||+| +|+.-++|||
T Consensus 237 ----------------------Dt~~l~lv~~P~~~DVlV~PNLYGDIlSD~~agLvGgLGltPS~N---iG~g~~~~e~ 291 (365)
T KOG0785|consen 237 ----------------------DTCCLKLVRNPSCFDVLVMPNLYGDILSDLCAGLVGGLGLTPSAN---IGDGIVIFEA 291 (365)
T ss_pred ----------------------HHHHHHHhcCchhceEEeccchhHHHHHHHHHHhccCcccCCCcc---cCCCeeeeec
Confidence 999999999999999999999999999999999999999999999 8877888999
Q ss_pred cc
Q psy3672 163 CD 164 (178)
Q Consensus 163 ~~ 164 (178)
||
T Consensus 292 vH 293 (365)
T KOG0785|consen 292 VH 293 (365)
T ss_pred cc
Confidence 97
No 22
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=5e-42 Score=310.78 Aligned_cols=126 Identities=16% Similarity=0.127 Sum_probs=117.7
Q ss_pred ceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHh-hCC------CeEEEEEEEeee
Q psy3672 13 SVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAK-LYP------VWTNRKMITGFI 85 (178)
Q Consensus 13 ~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~-eYp------dv~~~~~~v~~~ 85 (178)
.++... ++|+++++||+|+||+||++|+ ++||++||+||||.+||+|+++|+|+++ +|| +|+++++++
T Consensus 178 ~v~~~~-~~Tr~~~eRIar~AF~~A~~r~-~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYpe~~~~~~I~~~~~lV--- 252 (413)
T PTZ00435 178 GVAMGM-YNTDESIEGFARSCFQYALDRK-MPLYLSTKNTILKKYDGRFKDIFQEIYDEEYKAKFEKAGLWYEHRLI--- 252 (413)
T ss_pred CeeEEE-EeCHHHHHHHHHHHHHHHHHcC-CCEEEECCCCcchhhHHHHHHHHHHHHHHhCccccccCCEEEEEeeH---
Confidence 456555 9999999999999999999985 4799999999999999999999999996 799 899999999
Q ss_pred eccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCC--ceecCc
Q psy3672 86 WTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTG--SCQQSC 163 (178)
Q Consensus 86 ~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~--~~fep~ 163 (178)
|++|||||++|++| ||||+|||||||||++|+++||+||+||+| +|+++ ++|||+
T Consensus 253 -------------------Da~~m~lv~~P~~f-ViV~~NlfGDIlSDlaA~l~GglGlapSan---ig~d~~~a~FEp~ 309 (413)
T PTZ00435 253 -------------------DDMVAQAIKSEGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSVL---VCPDGKTVEAEAA 309 (413)
T ss_pred -------------------HHHHHHHhhCCCCe-EEEeecccchhhhHHHHHhcCcccccccce---eCCCCCeEEEEcC
Confidence 99999999999999 999999999999999999999999999999 78775 999999
Q ss_pred cccc
Q psy3672 164 DMVS 167 (178)
Q Consensus 164 ~~~~ 167 (178)
| |+
T Consensus 310 H-GS 312 (413)
T PTZ00435 310 H-GT 312 (413)
T ss_pred c-CC
Confidence 9 55
No 23
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=100.00 E-value=7.6e-42 Score=309.30 Aligned_cols=126 Identities=16% Similarity=0.124 Sum_probs=117.2
Q ss_pred ceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHH-hhCC------CeEEEEEEEeee
Q psy3672 13 SVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMA-KLYP------VWTNRKMITGFI 85 (178)
Q Consensus 13 ~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva-~eYp------dv~~~~~~v~~~ 85 (178)
+++..+ ++|+++++||+|+||+||++++ ++||++||+||||.+||+|+++|+|++ ++|| +|+++++++
T Consensus 176 ~v~~~~-~~T~~~~eRIar~AF~~A~~~~-~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYp~~~~~~~I~~~~~lV--- 250 (409)
T TIGR00127 176 GVAMAM-YNTDESIEGFAHSSFQLALEKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEALGIWYEHRLI--- 250 (409)
T ss_pred CeEEEE-EECHHHHHHHHHHHHHHHHHcC-CCEEEEcCcchhhhhhHHHHHHHHHHHHHhCcccccCCCEEEEEeeH---
Confidence 467766 8999999999999999999985 579999999999999999999999997 7999 899999999
Q ss_pred eccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCCc--eecCc
Q psy3672 86 WTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTGS--CQQSC 163 (178)
Q Consensus 86 ~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~~--~fep~ 163 (178)
|+++||||++|++| ||||+|||||||||++|+++||+||+||+| +|++++ +|||+
T Consensus 251 -------------------Da~~m~lv~~P~~f-Viv~~NlfGDIlSDlaA~l~GslGl~pSan---ig~~~~~~~fEp~ 307 (409)
T TIGR00127 251 -------------------DDMVAQALKSEGGF-IWACKNYDGDVQSDIVAQGFGSLGLMTSVL---ICPDGKTFEAEAA 307 (409)
T ss_pred -------------------HHHHHHHhhCCCCc-EEEecccchHHHHHHHHHhcCchhhhheee---eCCCCceEEeccc
Confidence 99999999999999 999999999999999999999999999999 788776 55999
Q ss_pred cccc
Q psy3672 164 DMVS 167 (178)
Q Consensus 164 ~~~~ 167 (178)
| |+
T Consensus 308 H-GS 310 (409)
T TIGR00127 308 H-GT 310 (409)
T ss_pred c-CC
Confidence 9 54
No 24
>PRK08299 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1e-41 Score=307.98 Aligned_cols=123 Identities=15% Similarity=0.125 Sum_probs=114.9
Q ss_pred eEEe-eecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHh-hCC------CeEEEEEEEeeeecc
Q psy3672 17 KVSL-RYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAK-LYP------VWTNRKMITGFIWTT 88 (178)
Q Consensus 17 ~~~~-~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~-eYp------dv~~~~~~v~~~~~~ 88 (178)
++++ +|+++++||+|+||+||++|+ ++||++||+||||.+||+|+++|+|+++ +|| +|+++++++
T Consensus 177 ~~~~~~Tr~~~eRIa~~AF~~A~~r~-~kVt~v~KaNVlk~t~glf~~~~~evA~~~yp~~~~~~~i~~~~~~v------ 249 (402)
T PRK08299 177 AMGMYNLDESIRDFARASFNYGLDRK-YPVYLSTKNTILKAYDGRFKDIFQEVYEAEFKEKFEAAGITYEHRLI------ 249 (402)
T ss_pred eEEEeecHHHHHHHHHHHHHHHHHcC-CCEEEECCCCcchhhhHHHHHHHHHHHHHhCccccccCcEEEEEeeH------
Confidence 4444 999999999999999999985 5699999999999999999999999995 899 599999999
Q ss_pred ccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCC--ceecCcccc
Q psy3672 89 RDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTG--SCQQSCDMV 166 (178)
Q Consensus 89 ~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~--~~fep~~~~ 166 (178)
|++|||||++|++| ||||+|||||||||++|+++||+|++||+| +|+.+ +||||+| |
T Consensus 250 ----------------Da~~~~lv~~P~~f-Vivt~NlfGDIlSDlaa~l~GglG~apSan---ig~~~~~a~FEp~H-G 308 (402)
T PRK08299 250 ----------------DDMVASALKWEGGY-VWACKNYDGDVQSDTVAQGFGSLGLMTSVL---MTPDGKTVEAEAAH-G 308 (402)
T ss_pred ----------------HHHHHHHHhCcCCc-EEEEeccccchhhhHHHhhcCCccccccee---eCCCCCcEEEecCC-C
Confidence 99999999999999 999999999999999999999999999999 77774 7999999 5
Q ss_pred c
Q psy3672 167 S 167 (178)
Q Consensus 167 ~ 167 (178)
+
T Consensus 309 S 309 (402)
T PRK08299 309 T 309 (402)
T ss_pred C
Confidence 5
No 25
>KOG0784|consensus
Probab=100.00 E-value=6.6e-42 Score=302.54 Aligned_cols=126 Identities=43% Similarity=0.564 Sum_probs=123.5
Q ss_pred ceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEEEeeeecccccc
Q psy3672 13 SVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDIN 92 (178)
Q Consensus 13 ~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~ 92 (178)
.|...++++|++.+|||+||||+||.+.|||+||+|||+|+||.+||+|+++|+||++.||+++++.|++
T Consensus 173 GVVEsLKVvT~~kseRIaryAF~yA~k~gRKkVTaVHKAnimKL~DGlFle~~~eva~~Yp~I~~e~miV---------- 242 (375)
T KOG0784|consen 173 GVVESLKVVTRFKSERIARYAFEYAKKNGRKKVTAVHKANIMKLGDGLFLESCQEVAKKYPDITFEEMIV---------- 242 (375)
T ss_pred chhheeeeehhhhhHHHHHHHHHHHHHhCCceEEEEeccCceecchhhHHHHHHHHHhcCCCccHHHhhH----------
Confidence 4899999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred ceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCCceecCc
Q psy3672 93 VFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTGSCQQSC 163 (178)
Q Consensus 93 ~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~~~fep~ 163 (178)
|++|||||++|++|||+|+|||||+|+|.++|+++||.|+.|++| +|+++++|||.
T Consensus 243 ------------DN~~MQlvs~P~qFDvmv~pnlYgniisNiaaGlvGG~Glv~G~n---~G~~yAVFE~g 298 (375)
T KOG0784|consen 243 ------------DNACMQLVSRPQQFDVMVMPNLYGNIISNIAAGLVGGAGLVSGAN---YGDDYAVFEPG 298 (375)
T ss_pred ------------HHhHHHhhcCchheeeEechHHHHHHHHHHHHHhcCCCCcccccc---cccceEEeccc
Confidence 999999999999999999999999999999999999999999999 89999999995
No 26
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=1.9e-40 Score=300.37 Aligned_cols=127 Identities=12% Similarity=0.047 Sum_probs=116.7
Q ss_pred eeeeEEee-ecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHh-----hCC--CeEEEEEEEeee
Q psy3672 14 VCDKVSLR-YEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAK-----LYP--VWTNRKMITGFI 85 (178)
Q Consensus 14 ~~~~~~~~-t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~-----eYp--dv~~~~~~v~~~ 85 (178)
.+.+++++ |+++++||+|+||++|++|+ ++||++||+||||++||+|+++|+|+++ +|| +|+++++++
T Consensus 178 ~~v~~~~~~T~~~~~Riar~AFe~A~~r~-~~vt~v~KaNVlk~~dglf~~~~~eva~~~~~~eyp~~~I~~~~~lV--- 253 (410)
T PLN00103 178 GGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLI--- 253 (410)
T ss_pred cceEEEEEcCHHHHHHHHHHHHHHHHhcC-CcEEEECCCCCchhhHHHHHHHHHHHHHhhhhhhCCCCceEEEEeEH---
Confidence 34467886 99999999999999999985 5699999999999999999999999996 799 799999999
Q ss_pred eccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCC--ceecCc
Q psy3672 86 WTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTG--SCQQSC 163 (178)
Q Consensus 86 ~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~--~~fep~ 163 (178)
|++||+||++|++| ||||+|||||||||++|+++||+|++||+| +|+.+ ++|||+
T Consensus 254 -------------------Da~a~~lv~~P~~f-Viv~~NLfGDIlSDlaA~l~GslGlapSan---ig~~~~~~~FEp~ 310 (410)
T PLN00103 254 -------------------DDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVL---VCPDGKTIEAEAA 310 (410)
T ss_pred -------------------HHHHHHHhcCCCCC-EEEEcccchHHHHHHHHHhcCchhhhhccc---cCCCCCcEEEeCC
Confidence 99999999999999 999999999999999999999999999999 67664 699999
Q ss_pred ccccc
Q psy3672 164 DMVSE 168 (178)
Q Consensus 164 ~~~~~ 168 (178)
| |+-
T Consensus 311 H-GSA 314 (410)
T PLN00103 311 H-GTV 314 (410)
T ss_pred C-CcC
Confidence 9 553
No 27
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=6.9e-40 Score=294.73 Aligned_cols=125 Identities=9% Similarity=-0.069 Sum_probs=111.0
Q ss_pred eeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHH-hhC-----------CCeEEEEEEE
Q psy3672 15 CDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMA-KLY-----------PVWTNRKMIT 82 (178)
Q Consensus 15 ~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva-~eY-----------pdv~~~~~~v 82 (178)
+...+++|.++++||+|+||+||++++ ++||++||+||||+++|+|+ +|+|++ ++| |+|+++++++
T Consensus 167 v~~~~~N~~~si~RiAr~AF~~A~~r~-~~Vt~v~KaNILK~tdg~f~-if~eVa~~eyk~~f~~~~~~~p~V~~e~~lI 244 (393)
T PLN00096 167 AVVTYHNPLDNVHHLARIFFGRCLDAG-IVPYVVTKKTVFKWQEPFWE-IMKKVFDEEFKSKFVDKGVMKSGDELVHLLS 244 (393)
T ss_pred EEEEeccCHHHHHHHHHHHHHHHHHhC-CcEEEEeCccccccchHHHH-HHHHHHHHHHhhhhhhcccCCCceEEEeeeH
Confidence 345689999999999999999999985 56999999999999999887 999997 678 4566666666
Q ss_pred eeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCC-----C
Q psy3672 83 GFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRT-----G 157 (178)
Q Consensus 83 ~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~-----~ 157 (178)
|+|+||||++|++||||||+|||||||||++|+++||+||+||+| +|+. .
T Consensus 245 ----------------------Da~~~qlVk~P~~fdViv~~NlfGDIlSDlaA~l~GsLGl~pSan---ig~d~dg~~~ 299 (393)
T PLN00096 245 ----------------------DAATMKLVVWTDGGFGMAAHNYDGDVLTDELAQVHKSPGFITSNL---VGVDENGTLI 299 (393)
T ss_pred ----------------------HHHHHHHHhCcccCCEEEECcccchHHHHHHHHhcCCcccccccc---cCCccCCccc
Confidence 999999999999999999999999999999999999999999999 5632 2
Q ss_pred ceecCccccc
Q psy3672 158 SCQQSCDMVS 167 (178)
Q Consensus 158 ~~fep~~~~~ 167 (178)
++|||+| |+
T Consensus 300 a~fEp~H-GS 308 (393)
T PLN00096 300 KEFEASH-GT 308 (393)
T ss_pred eEEEcCC-CC
Confidence 8999999 43
No 28
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=5.4e-39 Score=295.04 Aligned_cols=126 Identities=14% Similarity=0.098 Sum_probs=115.9
Q ss_pred ceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHh-----hCC--CeEEEEEEEeee
Q psy3672 13 SVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAK-----LYP--VWTNRKMITGFI 85 (178)
Q Consensus 13 ~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~-----eYp--dv~~~~~~v~~~ 85 (178)
.|+.. +++|+++++||+|+||+||+++ +++||++||+||||.+||+|+++|+|+++ +|| +|+++++++
T Consensus 246 gva~~-~~nT~~sieriAr~AF~yA~~r-k~~Vt~v~KaNILK~~DGlF~dif~eVa~~eyk~~yp~~~I~~e~~lI--- 320 (483)
T PLN03065 246 GVALA-MYNVDESIRAFAESSMAMALQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEEQWKQKFEEHSIWYEHRLI--- 320 (483)
T ss_pred CeEEE-EEECHHHHHHHHHHHHHHHHHc-CCCEEEEeCCCcccchHHHHHHHHHHHHHHhhhhcCCCCCceEEeeeH---
Confidence 46776 4999999999999999999998 45799999999999999999999999994 499 589988888
Q ss_pred eccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCC--ceecCc
Q psy3672 86 WTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTG--SCQQSC 163 (178)
Q Consensus 86 ~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~--~~fep~ 163 (178)
|+|+||||++|++| ||||+|||||||||++|+++||+||+||+| +|+++ ++|||+
T Consensus 321 -------------------Da~~~~lvk~P~~F-Viv~~NlfGDIlSDl~A~l~GsLGl~pSan---ig~dg~~~~fEa~ 377 (483)
T PLN03065 321 -------------------DDMVAYAVKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVL---LSSDGKTLEAEAA 377 (483)
T ss_pred -------------------HHHHHHHHhCCCCc-EEEeeccchhhhhHHHHHhcCchhhcccce---eCCCCceEEEecC
Confidence 99999999999999 999999999999999999999999999999 77776 599999
Q ss_pred cccc
Q psy3672 164 DMVS 167 (178)
Q Consensus 164 ~~~~ 167 (178)
| |+
T Consensus 378 H-GS 380 (483)
T PLN03065 378 H-GT 380 (483)
T ss_pred c-Cc
Confidence 9 44
No 29
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=1.6e-36 Score=271.53 Aligned_cols=144 Identities=22% Similarity=0.145 Sum_probs=125.1
Q ss_pred cceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhh--CCCeEEEEEEEeeeecc-
Q psy3672 12 LSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKL--YPVWTNRKMITGFIWTT- 88 (178)
Q Consensus 12 ~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~e--Ypdv~~~~~~v~~~~~~- 88 (178)
.+....+++++.++++|++|.||+||++++|++||++||.||||.|+|.|++|++||+++ |.+-.+. ...+.+
T Consensus 182 e~~GIgikp~s~~~s~Rlvr~ai~yAi~~~r~~VtlvhKgnImK~teGaFkdw~yeva~~~ef~~~~~~----~~~~~~~ 257 (407)
T COG0538 182 EDSGIGIKPISKEGSIRLVRAAIEYAIENKRKSVTLVHKGNIMKFTEGAFKDWGYEVAEEEEFGDEVVT----GKEKFEL 257 (407)
T ss_pred CCCceEEEecCchhhHHHHHHHHHHHHHcCCceEEEEecCeeeecccchHHHHHHHHHhhhcccccccc----cchhhhc
Confidence 467889999999999999999999999999999999999999999999999999999974 5442221 112222
Q ss_pred ccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCCceecCcc
Q psy3672 89 RDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTGSCQQSCD 164 (178)
Q Consensus 89 ~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~~~fep~~ 164 (178)
.+.+-+|+++|+++ |+|.+|++++|+.||||+|+||+||++||.+|+++||+||+||+| +|+..++|||+|
T Consensus 258 ~~~~gkI~~~dria--D~mlqQil~r~~eydViA~~NlnGDy~SDa~Aa~vGglGi~pgan---i~~~~~~fEA~H 328 (407)
T COG0538 258 KGPKGKIVYKDRIA--DDMLQQILLRPGEYDVIATKNLNGDYISDALAAQVGGLGLAPGAN---IGDGTAEFEATH 328 (407)
T ss_pred cCcCceEEEehhhH--HHHHHHHhcCCCCceEEEeccCCccHHHHHHHHhcCCccccccce---ecCceEEEEecc
Confidence 22222389999987 999999999999999999999999999999999999999999999 789999999987
No 30
>KOG0786|consensus
Probab=99.97 E-value=2.5e-32 Score=236.17 Aligned_cols=141 Identities=15% Similarity=0.126 Sum_probs=126.4
Q ss_pred eeecceeccc--ceeeeEEeeecccccHHHHHHHHHHHhCC-CCcEEEEeCCCccccccHHHHHHHHHHH-hhCCCeEEE
Q psy3672 3 LYLLDRLRQL--SVCDKVSLRYEETIDPCPRFSYVQDLLSN-RKKVTAVHKANIMKLGDGLFLNSCKEMA-KLYPVWTNR 78 (178)
Q Consensus 3 ~~~~~~~~~~--~~~~~~~~~t~~~~eRiar~AFe~A~~~~-rk~Vt~vhKaNvlk~tdglf~~i~~eva-~eYpdv~~~ 78 (178)
||||.+.... +|++++++|+-.++.||+|.||+.|++|+ ..++|+++|+||+. ++.+||+...+.. .|||++++.
T Consensus 140 iyfge~r~eng~gva~dte~Ya~~Ev~RIaR~Aa~~A~~~~pp~pl~slDKANVLa-aSrLWRKtV~~~~k~EyP~l~l~ 218 (363)
T KOG0786|consen 140 IYFGEPRNENGEGVAFDTEIYAAHEVDRIARVAAETARKRRPPGPLCSLDKANVLA-ASRLWRKTVTKALKSEYPDLELS 218 (363)
T ss_pred eeecCcccCCCcceeeccccccHHHHHHHHHHHHHHHHhhCCCCCccccchhhHHH-HHHHHHHHHHHHHHhhCCCcchh
Confidence 7999887654 59999999999999999999999999873 26899999999999 6799999998765 599999999
Q ss_pred EEEEeeeeccccccceeEEEeecccccHHHHHHhhCCCCCc-EEEeeCCCcccccccccccccccccccCccccccCC--
Q psy3672 79 KMITGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFD-VMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISR-- 155 (178)
Q Consensus 79 ~~~v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fD-Viv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~-- 155 (178)
|+++ |+++||||++|.+|| +|+|.|+||||+||.++-+.||+||.|||+++.+-+
T Consensus 219 hqli----------------------DsAAM~Lvk~P~~lng~ivT~NiFGDIiSDEASvIpGSlGlLPSASLs~v~~~e 276 (363)
T KOG0786|consen 219 HQLI----------------------DSAAMQLVKDPKQLNGTIVTNNIFGDIISDEASVIPGSLGLLPSASLSGVVSEE 276 (363)
T ss_pred hhhh----------------------hHHHHHHhcCchhcCceEEeccchhhhhccccccccCccccccchhhcCCcccc
Confidence 9999 999999999999999 999999999999999999999999999999764432
Q ss_pred -CCceecCcccc
Q psy3672 156 -TGSCQQSCDMV 166 (178)
Q Consensus 156 -~~~~fep~~~~ 166 (178)
.++.|||||=.
T Consensus 277 s~~gL~EPiHGS 288 (363)
T KOG0786|consen 277 SGPGLFEPIHGS 288 (363)
T ss_pred cCCcccccCCCC
Confidence 36789999843
No 31
>KOG1526|consensus
Probab=99.85 E-value=7.8e-22 Score=174.31 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=111.1
Q ss_pred eeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHh-hCCCeEEEEEEEeeeeccccccc
Q psy3672 15 CDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAK-LYPVWTNRKMITGFIWTTRDINV 93 (178)
Q Consensus 15 ~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~-eYpdv~~~~~~v~~~~~~~~~~~ 93 (178)
....+++|.+.++-+|+.+|++|+++ +-++++.+|.+++|.+||.|+++|+|+++ +|+. +++ ..
T Consensus 188 ~~~~m~~~dds~~~FAhssf~~Al~k-k~pLylsTKNTILKkYDgrFKdiFqeiye~~yk~-kfe-------------~~ 252 (422)
T KOG1526|consen 188 VAAMMYNTDDSIRGFAHSSFQYALQK-KWPLYLSTKNTILKKYDGRFKDIFQEIYEKQYKS-KFE-------------AL 252 (422)
T ss_pred eeEEEeeccchhhHHHHHHHHHHHHh-cCceeeeccchHHHHhCChHHHHHHHHHHHHHHH-HHH-------------hh
Confidence 44567888889999999999999997 68999999999999999999999999984 7875 432 24
Q ss_pred eeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCCceec
Q psy3672 94 FIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTGSCQQ 161 (178)
Q Consensus 94 ~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~~~fe 161 (178)
+|||+||+| |+|.+|++++-++| ||+|.|+.||+.||.+||..|||||++|.- +-++|--||
T Consensus 253 ~IwYEHRLI--DDmVAqa~KS~GGf-vwAcKNYDGDVqSD~vAQg~GSLGlMTSVL---v~pdGKT~E 314 (422)
T KOG1526|consen 253 GIWYEHRLI--DDMVAQAMKSEGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSVL---VCPDGKTVE 314 (422)
T ss_pred cchhhhhhH--HHHHHHHHhcCCce-EEEeecCCCchhhhHHHhcccchhhheeEE---EcCCCCeee
Confidence 799999999 99999999999999 999999999999999999999999999986 445554454
No 32
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=76.64 E-value=32 Score=27.81 Aligned_cols=84 Identities=10% Similarity=-0.061 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHh--CCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEEEeeccccc
Q psy3672 28 PCPRFSYVQDLL--SNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRIITVF 105 (178)
Q Consensus 28 Riar~AFe~A~~--~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~~D 105 (178)
...+.+.++..+ +|.++|-++. ++....+.....+-+++..+++|+++...... .-|...++ -
T Consensus 106 ~~g~~~~~~l~~~~~g~~~i~~l~-~~~~~~~~~~R~~g~~~~l~~~~~~~~~~~~~-~~~~~~~~-------------~ 170 (270)
T cd06308 106 EIGRQAGEYIANLLPGKGNILEIW-GLEGSSPAIERHDGFKEALSKYPKIKIVAQQD-GDWLKEKA-------------E 170 (270)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEE-CCCCCchHHHHHHHHHHHHHHCCCCEEEEecC-CCccHHHH-------------H
Confidence 344444444444 2566777774 11111122233344555556787765432111 11111110 2
Q ss_pred HHHHHHhhCCCCCcEEEeeCC
Q psy3672 106 NWTRQIVSNPHQFDVMVMPNL 126 (178)
Q Consensus 106 a~~~~LV~~P~~fDViv~~Nl 126 (178)
..+.++++...++|.|+|.|-
T Consensus 171 ~~~~~~l~~~~~~~aI~~~~d 191 (270)
T cd06308 171 EKMEELLQANPDIDLVYAHND 191 (270)
T ss_pred HHHHHHHHhCCCCcEEEeCCc
Confidence 355666665557899988753
No 33
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=64.31 E-value=21 Score=29.41 Aligned_cols=83 Identities=12% Similarity=-0.053 Sum_probs=52.3
Q ss_pred CCCccccccH--HHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEEEee-cccccHHHHH--------HhhCCCCC
Q psy3672 50 KANIMKLGDG--LFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRR-IITVFNWTRQ--------IVSNPHQF 118 (178)
Q Consensus 50 KaNvlk~tdg--lf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~~~~-~i~~Da~~~~--------LV~~P~~f 118 (178)
|.|.++ +.+ .+++-..+...+...+.+.+... .+|+++.+|.+. .++.|....+ .+ .+.++
T Consensus 3 ~~~~~~-~~~~~~~~~~l~~~l~~~ga~~~g~F~L------~SG~~s~~yiD~~~~~~~p~~~~~i~~~la~~~-~~~~~ 74 (187)
T PRK13810 3 KTNLET-GNNIENQKQELIAALKACGAVRYGDFTL------SSGKKSKYYIDIKKASTDPKTLKLIARQAALRI-KEMDV 74 (187)
T ss_pred cccccc-CCchHHHHHHHHHHHHHCCCeEecCEEE------cCCCcCCEEEECchhcCCHHHHHHHHHHHHHHh-ccCCC
Confidence 555555 333 26666666666777777765333 556677777666 3333442222 22 25689
Q ss_pred cEEEeeCCCccccccccccccc
Q psy3672 119 DVMVMPNLYGNIFDVMVMPNLY 140 (178)
Q Consensus 119 DViv~~Nl~GDILSDlaA~l~G 140 (178)
|.|+++-+=|..++-..|...|
T Consensus 75 d~I~g~~~~GiplA~~vA~~l~ 96 (187)
T PRK13810 75 DTVAGVELGGVPLATAVSLETG 96 (187)
T ss_pred CEEEEEccchHHHHHHHHHHhC
Confidence 9999999999998887777654
No 34
>PRK12862 malic enzyme; Reviewed
Probab=61.52 E-value=17 Score=36.42 Aligned_cols=97 Identities=11% Similarity=0.021 Sum_probs=56.3
Q ss_pred ecccccHHHHHHHHHHHhCCC-CcEEEE---eCCCccccccHHHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEE
Q psy3672 22 YEETIDPCPRFSYVQDLLSNR-KKVTAV---HKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWT 97 (178)
Q Consensus 22 t~~~~eRiar~AFe~A~~~~r-k~Vt~v---hKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~ 97 (178)
|.+...++++.+.+++++-|- -||=+. ++.|.-......-++..+.+.+++|++.++--+-
T Consensus 610 t~e~La~ia~~aa~~ar~~GIePRVAvLshs~~Gs~~~ee~~~i~pAiellr~~~~g~~VdGPl~--------------- 674 (763)
T PRK12862 610 TAEELAEITILAAEEVRRFGIEPKVALLSHSNFGSSDSPSARKMREALEILRERAPDLEVDGEMH--------------- 674 (763)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCeEEEEcccccCCCCCchHHHHHHHHHHHHhcCCCcEEEcCCC---------------
Confidence 445566777888888886653 346666 3333223232334444554445788876653222
Q ss_pred EeecccccHHHHHHhhC---C-----CCCcEEEeeCCC-cccccccccccc
Q psy3672 98 IRRIITVFNWTRQIVSN---P-----HQFDVMVMPNLY-GNIFDVMVMPNL 139 (178)
Q Consensus 98 ~~~~i~~Da~~~~LV~~---P-----~~fDViv~~Nl~-GDILSDlaA~l~ 139 (178)
+|++...-+.. | +.+|++|+||+. |+|.--+..-..
T Consensus 675 ------aDtAf~~~~~~~K~~~s~vaG~aDvLV~P~~DqGNI~~Kll~f~~ 719 (763)
T PRK12862 675 ------GDAALDEELRDRIFPDSRLEGEANLLVFPNLDAANIAYNLLKTAA 719 (763)
T ss_pred ------HHHHcCHHHHhhcCCCCccCCCCCEEEecChhHhhHHHHHHHHhc
Confidence 26555332222 2 469999999997 888766655443
No 35
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=60.34 E-value=71 Score=25.79 Aligned_cols=83 Identities=11% Similarity=0.014 Sum_probs=40.3
Q ss_pred cHHHHHHHHHHHhC--CCCcEEEEe-CCCccccccHHHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEEEeeccc
Q psy3672 27 DPCPRFSYVQDLLS--NRKKVTAVH-KANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRIIT 103 (178)
Q Consensus 27 eRiar~AFe~A~~~--~rk~Vt~vh-KaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~ 103 (178)
....+.+.++..++ |++++.++. ..+... + ....+-+.+..+++|++++..... .-|...+.
T Consensus 105 ~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~-~-~~r~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~------------ 169 (275)
T cd06320 105 KANGVRGAEWIIDKLAEGGKVAIIEGKAGAFA-A-EQRTEGFTEAIKKASGIEVVASQP-ADWDREKA------------ 169 (275)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEeCCCCCcc-H-HHHHHHHHHHHhhCCCcEEEEecC-CCccHHHH------------
Confidence 34455555555544 566776653 223221 1 222344555555566665432111 00000010
Q ss_pred ccHHHHHHhhCCCCCcEEEeeC
Q psy3672 104 VFNWTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 104 ~Da~~~~LV~~P~~fDViv~~N 125 (178)
...+.++++++.++|.++|.|
T Consensus 170 -~~~~~~~l~~~~~~~ai~~~~ 190 (275)
T cd06320 170 -YDVATTILQRNPDLKAIYCNN 190 (275)
T ss_pred -HHHHHHHHHhCCCccEEEECC
Confidence 235567777666789988885
No 36
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=57.84 E-value=84 Score=24.98 Aligned_cols=83 Identities=11% Similarity=-0.002 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhC--CCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEEEeecccccH
Q psy3672 29 CPRFSYVQDLLS--NRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRIITVFN 106 (178)
Q Consensus 29 iar~AFe~A~~~--~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~~Da 106 (178)
..+.+.++..++ |++++.++.=..-.. +.....+-+++..++++++++..... ++. .... +-.
T Consensus 106 ~~~~~~~~l~~~~~g~~~i~~l~~~~~~~-~~~~r~~g~~~~l~~~~~~~~~~~~~------~~~-----~~~~---~~~ 170 (268)
T cd06323 106 GGKMAAEYLVKLLGGKGKVVELQGIPGAS-AARERGKGFHEVVDKYPGLKVVASQP------ADF-----DRAK---GLN 170 (268)
T ss_pred HHHHHHHHHHHHhCCCceEEEEeCCCCCc-cHHHHHHHHHHHHHhCCCcEEEeccc------CCC-----CHHH---HHH
Confidence 344444444443 556777764222122 22344455555556666655431110 000 0000 023
Q ss_pred HHHHHhhCCCCCcEEEeeCC
Q psy3672 107 WTRQIVSNPHQFDVMVMPNL 126 (178)
Q Consensus 107 ~~~~LV~~P~~fDViv~~Nl 126 (178)
.+.++++.+..+|.++|.|-
T Consensus 171 ~~~~~l~~~~~~~ai~~~~d 190 (268)
T cd06323 171 VMENILQAHPDIKGVFAQND 190 (268)
T ss_pred HHHHHHHHCCCcCEEEEcCC
Confidence 45566766667898888764
No 37
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=53.57 E-value=56 Score=22.88 Aligned_cols=61 Identities=16% Similarity=0.004 Sum_probs=37.6
Q ss_pred HHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhh---CCCeEEEEEEEeeeeccccccceeEEEeecccccHHH
Q psy3672 32 FSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKL---YPVWTNRKMITGFIWTTRDINVFIWTIRRIITVFNWT 108 (178)
Q Consensus 32 ~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~e---Ypdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~~Da~~ 108 (178)
+++.+|+.....+|+.++. +.-..+.+++-+++ -+.+++. . .|.
T Consensus 15 ~~~~l~~~~~~~~v~gvD~-------s~~~~~~a~~~~~~~~~~~~i~~~---~---------------------~d~-- 61 (112)
T PF12847_consen 15 LSIALARLFPGARVVGVDI-------SPEMLEIARERAAEEGLSDRITFV---Q---------------------GDA-- 61 (112)
T ss_dssp HHHHHHHHHTTSEEEEEES-------SHHHHHHHHHHHHHTTTTTTEEEE---E---------------------SCC--
T ss_pred HHHHHHhcCCCCEEEEEeC-------CHHHHHHHHHHHHhcCCCCCeEEE---E---------------------Ccc--
Confidence 4566666434577999974 33445666665522 1233332 1 144
Q ss_pred HHHhhCCCCCcEEEeeC
Q psy3672 109 RQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 109 ~~LV~~P~~fDViv~~N 125 (178)
......+++||++++.+
T Consensus 62 ~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 62 EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp HGGTTTSSCEEEEEECS
T ss_pred ccCcccCCCCCEEEECC
Confidence 56677788999999998
No 38
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=50.25 E-value=1.1e+02 Score=24.42 Aligned_cols=23 Identities=4% Similarity=0.007 Sum_probs=17.0
Q ss_pred cHHHHHHHHHHHhCCCCcEEEEe
Q psy3672 27 DPCPRFSYVQDLLSNRKKVTAVH 49 (178)
Q Consensus 27 eRiar~AFe~A~~~~rk~Vt~vh 49 (178)
.+..+.|.++..+.|.+++.++.
T Consensus 103 ~~~g~~a~~~l~~~g~~~i~~i~ 125 (270)
T cd01545 103 RAAAREMTRHLIDLGHRRIAFIA 125 (270)
T ss_pred HHHHHHHHHHHHHCCCceEEEEe
Confidence 45667777777777778888876
No 39
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=48.91 E-value=1.3e+02 Score=23.96 Aligned_cols=84 Identities=10% Similarity=-0.029 Sum_probs=40.5
Q ss_pred cHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCC-CeEEEEEEEeeeeccccccceeEEEeeccccc
Q psy3672 27 DPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYP-VWTNRKMITGFIWTTRDINVFIWTIRRIITVF 105 (178)
Q Consensus 27 eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYp-dv~~~~~~v~~~~~~~~~~~~i~~~~~~i~~D 105 (178)
.+..+.|.++-.++|.++|.++. .+--..+.....+-+++..+++. +.... ......+...+. -
T Consensus 107 ~~~g~~~~~~l~~~g~~~i~~i~-~~~~~~~~~~r~~gf~~~~~~~~~~~~~~-~~~~~~~~~~~~-------------~ 171 (270)
T cd06294 107 IQAGYDATEYLIKLGHKKIAFVG-GDLDLEVTQDRLQGYKQALEDHGIPDRNE-VIISLDFSEEGG-------------Y 171 (270)
T ss_pred HHHHHHHHHHHHHcCCccEEEec-CCcccHHHHHHHHHHHHHHHHcCCCCCcc-eEEecCCchHHH-------------H
Confidence 45666666766666777888775 22211122233445555555542 11110 011000000000 2
Q ss_pred HHHHHHhhCCCCCcEEEeeC
Q psy3672 106 NWTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 106 a~~~~LV~~P~~fDViv~~N 125 (178)
.+..++++....+|+|+|.|
T Consensus 172 ~~~~~~l~~~~~~~ai~~~~ 191 (270)
T cd06294 172 KALKKLLEQHPRPTAIVATD 191 (270)
T ss_pred HHHHHHHhCCCCCCEEEECC
Confidence 34456666656899999976
No 40
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=47.64 E-value=1.4e+02 Score=24.18 Aligned_cols=86 Identities=10% Similarity=-0.111 Sum_probs=40.9
Q ss_pred cHHHHHHHHHHHhC--CCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEEEeecccc
Q psy3672 27 DPCPRFSYVQDLLS--NRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRIITV 104 (178)
Q Consensus 27 eRiar~AFe~A~~~--~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~~ 104 (178)
....+.+.++..++ |.+++-++.-..-.. ......+-+++..+++++++...... .-|...+ +
T Consensus 107 ~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~-~~~~R~~Gf~~~l~~~~~~~~~~~~~-~~~~~~~-------------~ 171 (273)
T cd06309 107 VEEGRRAADWLAKATGGKGNIVELQGTVGSS-VAIDRKKGFAEVIKKYPNMKIVASQT-GDFTRAK-------------G 171 (273)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEeCCCCCc-hHHHHHHHHHHHHHHCCCCEEeeccC-CcccHHH-------------H
Confidence 34555666666655 666777775221111 11233344444445666544321111 0000000 0
Q ss_pred cHHHHHHhh-CCCCCcEEEeeCCC
Q psy3672 105 FNWTRQIVS-NPHQFDVMVMPNLY 127 (178)
Q Consensus 105 Da~~~~LV~-~P~~fDViv~~Nl~ 127 (178)
...+.++++ +|..+|+|+|.|-.
T Consensus 172 ~~~~~~~l~~~~~~~~aI~~~~d~ 195 (273)
T cd06309 172 KEVMEALLKAHGDDIDAVYAHNDE 195 (273)
T ss_pred HHHHHHHHHhCCCCccEEEECCcH
Confidence 234556664 46579999998744
No 41
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=44.86 E-value=1.6e+02 Score=23.71 Aligned_cols=81 Identities=10% Similarity=0.072 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhC--CCCcEEEEe-CCCccccccHHHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEEEeecccc
Q psy3672 28 PCPRFSYVQDLLS--NRKKVTAVH-KANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRIITV 104 (178)
Q Consensus 28 Riar~AFe~A~~~--~rk~Vt~vh-KaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~~ 104 (178)
...+.+.++..++ ++++|.++. -.+ . ......+-+++..++|| +++..... .-|.... +
T Consensus 111 ~~g~~aa~~l~~~~~g~~~i~~~~g~~~--~-~~~~R~~gf~~~l~~~~-~~~~~~~~-~~~~~~~-------------~ 172 (274)
T cd06311 111 GMGRVAGEYIATKLGGNGNIVVLRGIPT--P-IDNERVDAFDAAIAKYP-IKILDRQY-ANWNRDD-------------A 172 (274)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECCCC--c-chhHHHHHHHHHHhhCC-cEEEeccC-CCCcHHH-------------H
Confidence 3445555555544 566776664 222 1 22334455666656777 44432111 0000000 0
Q ss_pred cHHHHHHhhCCCCCcEEEeeCC
Q psy3672 105 FNWTRQIVSNPHQFDVMVMPNL 126 (178)
Q Consensus 105 Da~~~~LV~~P~~fDViv~~Nl 126 (178)
-..+.++++...++|+|+|.|=
T Consensus 173 ~~~~~~~l~~~~~~~ai~~~~d 194 (274)
T cd06311 173 FSVMQDLLTKFPKIDAVWAHDD 194 (274)
T ss_pred HHHHHHHHHhCCCcCEEEECCC
Confidence 2334455554346899999863
No 42
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=43.09 E-value=1.8e+02 Score=23.69 Aligned_cols=20 Identities=15% Similarity=-0.056 Sum_probs=12.5
Q ss_pred HHHHHhhCCCCCcEEEeeCC
Q psy3672 107 WTRQIVSNPHQFDVMVMPNL 126 (178)
Q Consensus 107 ~~~~LV~~P~~fDViv~~Nl 126 (178)
...++++....+|+|+|.|=
T Consensus 173 ~~~~~l~~~~~~~ai~~~nd 192 (272)
T cd06313 173 IWETWLTKYPQLDGAFCHND 192 (272)
T ss_pred HHHHHHHhCCCCCEEEECCC
Confidence 44455544335899999863
No 43
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=42.68 E-value=1.7e+02 Score=23.32 Aligned_cols=19 Identities=5% Similarity=-0.066 Sum_probs=12.3
Q ss_pred HHHHHhhCCCCC--cEEEeeC
Q psy3672 107 WTRQIVSNPHQF--DVMVMPN 125 (178)
Q Consensus 107 ~~~~LV~~P~~f--DViv~~N 125 (178)
.+.++++.+.+. +.++|.|
T Consensus 171 ~~~~~l~~~~~~~~~ai~~~~ 191 (273)
T cd06305 171 QVEAVLKKYPKGGIDAIWAAW 191 (273)
T ss_pred HHHHHHHHCCCcccCeEEEcC
Confidence 445566554556 8888885
No 44
>TIGR00651 pta phosphate acetyltransferase. Model contains a gene from E.coli coding for ethanolamine utilization protein (euti) and also contains similarity to malate oxidoreductases
Probab=42.57 E-value=54 Score=29.11 Aligned_cols=106 Identities=15% Similarity=0.025 Sum_probs=55.3
Q ss_pred eeeeEEeeecccccH---HHHHHHHHHHhCC--CCcEEEE---eCCCccccccHHHHHHHHHHHhhCCCeEEEEEEEeee
Q psy3672 14 VCDKVSLRYEETIDP---CPRFSYVQDLLSN--RKKVTAV---HKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFI 85 (178)
Q Consensus 14 ~~~~~~~~t~~~~eR---iar~AFe~A~~~~--rk~Vt~v---hKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~ 85 (178)
...|+-++.....+. |+..|.++|+.-+ +-||-+. +|.|---.+-..-++.++-+.+++|++.++-.+-
T Consensus 146 ~~~D~~vn~~P~~e~l~~ia~~a~~~a~~lg~~~PkVAlLs~S~~gs~~~~~~~kv~eA~~l~~~~~~~~~vdG~l~--- 222 (303)
T TIGR00651 146 VFGDCAVNPDPNAEQLAEIAIQSAKSAKSFGEIEPKVALLSYSTKGSGSGEDVEKVREATRIAKEKRPDLTIDGELQ--- 222 (303)
T ss_pred EEEeCeeeCCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCCCccHHHHHHHHHHhccCCCeEEEecCc---
Confidence 344445554444444 5566677887665 2344443 3444322222344454433333678866542221
Q ss_pred eccccccceeEEEeecccccHHH------HHHhhCC--CCCcEEEeeCCC-ccccccccccccc
Q psy3672 86 WTTRDINVFIWTIRRIITVFNWT------RQIVSNP--HQFDVMVMPNLY-GNIFDVMVMPNLY 140 (178)
Q Consensus 86 ~~~~~~~~~i~~~~~~i~~Da~~------~~LV~~P--~~fDViv~~Nl~-GDILSDlaA~l~G 140 (178)
.|++. .+...+| +.-||+|+||++ |||+--+.-.+.|
T Consensus 223 ------------------~D~Al~~~~a~~K~~~s~v~G~AdvLV~Pnl~aGNi~~K~~~~~~~ 268 (303)
T TIGR00651 223 ------------------FDAAFVEKVAEKKAPNSPVAGSANVFVFPDLDAGNIGYKIVQRLGD 268 (303)
T ss_pred ------------------hhhhCCHHHHHhhCCCCccCCcCCEEEeCCchHHHHHHHHHHHhcC
Confidence 03322 2333333 578999999998 8887665544433
No 45
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=41.61 E-value=1.8e+02 Score=23.30 Aligned_cols=22 Identities=5% Similarity=-0.073 Sum_probs=15.5
Q ss_pred HHHHHHhhCCCCCcEEEeeCCC
Q psy3672 106 NWTRQIVSNPHQFDVMVMPNLY 127 (178)
Q Consensus 106 a~~~~LV~~P~~fDViv~~Nl~ 127 (178)
.++.++++...+.|+|+|.|-.
T Consensus 174 ~~~~~~l~~~~~~~~i~~~~d~ 195 (272)
T cd06300 174 KAVADFLASNPDVDGIWTQGGD 195 (272)
T ss_pred HHHHHHHHhCCCcCEEEecCCC
Confidence 4566777654478999998654
No 46
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=40.72 E-value=1.9e+02 Score=23.17 Aligned_cols=32 Identities=16% Similarity=-0.032 Sum_probs=19.1
Q ss_pred EEeeecccccHHHHHHHHHHHhC--CCCcEEEEe
Q psy3672 18 VSLRYEETIDPCPRFSYVQDLLS--NRKKVTAVH 49 (178)
Q Consensus 18 ~~~~t~~~~eRiar~AFe~A~~~--~rk~Vt~vh 49 (178)
+....+...+..+++.++.+.+. |.+++-++.
T Consensus 99 v~~d~~~~g~~~~~~l~~~~~~~~~g~~~i~~i~ 132 (277)
T cd06319 99 IKSDNYEGAYDLGKFLAAAMKAQGWADGKVGMVA 132 (277)
T ss_pred EeeccHHHHHHHHHHHHHHHHhhCCCCCcEEEEe
Confidence 33444455667788887776543 345666654
No 47
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=40.30 E-value=1.4e+02 Score=24.51 Aligned_cols=20 Identities=10% Similarity=0.150 Sum_probs=14.6
Q ss_pred HHHHHHhhCCCCCcEEEeeC
Q psy3672 106 NWTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 106 a~~~~LV~~P~~fDViv~~N 125 (178)
.++.++++.+..+|.|+|.|
T Consensus 202 ~~~~~~l~~~~~~~ai~~~~ 221 (309)
T PRK11041 202 KALKQLLDLPQPPTAVFCHS 221 (309)
T ss_pred HHHHHHHcCCCCCCEEEEcC
Confidence 35567777766799999875
No 48
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.93 E-value=2.1e+02 Score=23.51 Aligned_cols=23 Identities=4% Similarity=0.056 Sum_probs=16.9
Q ss_pred cHHHHHHHHHHHhCCCCcEEEEe
Q psy3672 27 DPCPRFSYVQDLLSNRKKVTAVH 49 (178)
Q Consensus 27 eRiar~AFe~A~~~~rk~Vt~vh 49 (178)
.+.++.|.++-.++|.+++-++.
T Consensus 103 ~~~~~~a~~~L~~~G~~~I~~i~ 125 (269)
T cd06287 103 AATARMLLEHLRAQGARQIALIV 125 (269)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEe
Confidence 45677777777888878887774
No 49
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=39.79 E-value=2.3e+02 Score=23.92 Aligned_cols=82 Identities=6% Similarity=-0.065 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhCCCCc-EEEEeCC-CccccccHHHHHHHHHHHhhCCCeEEEEEEEeeeecc-ccccceeEEEeecccc
Q psy3672 28 PCPRFSYVQDLLSNRKK-VTAVHKA-NIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTT-RDINVFIWTIRRIITV 104 (178)
Q Consensus 28 Riar~AFe~A~~~~rk~-Vt~vhKa-Nvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~~~~-~~~~~~i~~~~~~i~~ 104 (178)
.-.+.|.++-.++|.++ +.++.-. +... + ..-++=+++..+++ .+.+++.++.....+ .++
T Consensus 104 ~a~~~a~~~Li~~Gh~~~I~~i~~~~~~~~-~-~~R~~Gy~~Al~~~-Gl~~~~~~i~~~~~~~~~g------------- 167 (279)
T PF00532_consen 104 EAGYEATEYLIKKGHRRPIAFIGGPEDSST-S-RERLQGYRDALKEA-GLPIDEEWIFEGDFDYESG------------- 167 (279)
T ss_dssp HHHHHHHHHHHHTTCCSTEEEEEESTTTHH-H-HHHHHHHHHHHHHT-TSCEEEEEEEESSSSHHHH-------------
T ss_pred HHHHHHHHHHHhcccCCeEEEEecCcchHH-H-HHHHHHHHHHHHHc-CCCCCcccccccCCCHHHH-------------
Confidence 34556777777888888 6655432 2221 1 11111233333444 223444444111111 111
Q ss_pred cHHHHHHhhCCCCCcEEEeeC
Q psy3672 105 FNWTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 105 Da~~~~LV~~P~~fDViv~~N 125 (178)
=.++.+|+.++..+|.|+|.|
T Consensus 168 ~~~~~~ll~~~p~idai~~~n 188 (279)
T PF00532_consen 168 YEAARELLESHPDIDAIFCAN 188 (279)
T ss_dssp HHHHHHHHHTSTT-SEEEESS
T ss_pred HHHHHHHHhhCCCCEEEEEeC
Confidence 256788999988899999988
No 50
>KOG1014|consensus
Probab=37.29 E-value=1.1e+02 Score=27.78 Aligned_cols=88 Identities=11% Similarity=0.131 Sum_probs=53.0
Q ss_pred HHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEEEeee---------ecc-ccccceeEEEee
Q psy3672 31 RFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFI---------WTT-RDINVFIWTIRR 100 (178)
Q Consensus 31 r~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~---------~~~-~~~~~~i~~~~~ 100 (178)
.||+|+|+ || -+|.++. + |.+-...+.+|+.++|+ ++++...+++- .+. .+.-++||+++-
T Consensus 64 ayA~eLAk-rG-~nvvLIs-----R-t~~KL~~v~kEI~~~~~-vev~~i~~Dft~~~~~ye~i~~~l~~~~VgILVNNv 134 (312)
T KOG1014|consen 64 AYARELAK-RG-FNVVLIS-----R-TQEKLEAVAKEIEEKYK-VEVRIIAIDFTKGDEVYEKLLEKLAGLDVGILVNNV 134 (312)
T ss_pred HHHHHHHH-cC-CEEEEEe-----C-CHHHHHHHHHHHHHHhC-cEEEEEEEecCCCchhHHHHHHHhcCCceEEEEecc
Confidence 58999998 55 4477764 4 67778899999999998 67665554221 111 222336666655
Q ss_pred cccccHHHHHHhhCCC-CCcEEEeeCCCc
Q psy3672 101 IITVFNWTRQIVSNPH-QFDVMVMPNLYG 128 (178)
Q Consensus 101 ~i~~Da~~~~LV~~P~-~fDViv~~Nl~G 128 (178)
=+--|. -..+..-|+ .+.=|+.-|.++
T Consensus 135 G~~~~~-P~~f~~~~~~~~~~ii~vN~~~ 162 (312)
T KOG1014|consen 135 GMSYDY-PESFLKYPEGELQNIINVNILS 162 (312)
T ss_pred cccCCC-cHHHHhCchhhhhheeEEecch
Confidence 222233 345555565 445566666665
No 51
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=36.15 E-value=1.5e+02 Score=20.65 Aligned_cols=89 Identities=17% Similarity=0.104 Sum_probs=48.5
Q ss_pred ccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEEEeeccccc
Q psy3672 26 IDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRIITVF 105 (178)
Q Consensus 26 ~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~~D 105 (178)
+-.+.-..-.+..+....+|++++=..-. .|-+|++..++.++++|. .+....+ ......+ ....-.+.+
T Consensus 8 IaP~~s~l~~~~~~~~~~~v~l~~~~r~~--~~~~~~~~l~~~~~~~~~-~~~~~~~----~~~~~~~---~~~~g~v~~ 77 (109)
T PF00175_consen 8 IAPFLSMLRYLLERNDNRKVTLFYGARTP--EDLLFRDELEALAQEYPN-RFHVVYV----SSPDDGW---DGFKGRVTD 77 (109)
T ss_dssp GHHHHHHHHHHHHHTCTSEEEEEEEESSG--GGSTTHHHHHHHHHHSTT-CEEEEEE----TTTTSST---TSEESSHHH
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEEEccc--ccccchhHHHHHHhhccc-ccccccc----ccccccc---CCceeehhH
Confidence 33343333333333345788888743332 366899999999999998 3332223 1111111 111212236
Q ss_pred HHHHHHhh---CCCCCcEEEee
Q psy3672 106 NWTRQIVS---NPHQFDVMVMP 124 (178)
Q Consensus 106 a~~~~LV~---~P~~fDViv~~ 124 (178)
.+..++.. ++.+..|.+|-
T Consensus 78 ~~~~~~~~~~~~~~~~~v~iCG 99 (109)
T PF00175_consen 78 LLLEDLLPEKIDPDDTHVYICG 99 (109)
T ss_dssp HHHHHHHHHHHCTTTEEEEEEE
T ss_pred HHHHhhcccccCCCCCEEEEEC
Confidence 66567776 66777788874
No 52
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=35.83 E-value=2.3e+02 Score=22.64 Aligned_cols=83 Identities=11% Similarity=-0.026 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhC--CCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEEEeeccccc
Q psy3672 28 PCPRFSYVQDLLS--NRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRIITVF 105 (178)
Q Consensus 28 Riar~AFe~A~~~--~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~~D 105 (178)
...+.+.++..++ |.+++.++.-. -.. +.....+-+++..+++|.++...... . + ..+ .. -
T Consensus 105 ~~g~~~~~~l~~~~~g~~~i~~i~~~-~~~-~~~~R~~gf~~~~~~~~~~~~~~~~~-~-~-~~~---------~~---~ 167 (267)
T cd06322 105 AGGVLAGELAAKVLNGKGQVAIIDYP-TVQ-SVVDRVRGFKEALADYPNIKIVAVQP-G-I-TRA---------EA---L 167 (267)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEecC-CCc-cHHHHHHHHHHHHHhCCCcEEEEecC-C-C-ChH---------HH---H
Confidence 3444455555443 56677777632 222 22334455555556777766532111 0 0 000 00 1
Q ss_pred HHHHHHhhCCCCCcEEEeeCCC
Q psy3672 106 NWTRQIVSNPHQFDVMVMPNLY 127 (178)
Q Consensus 106 a~~~~LV~~P~~fDViv~~Nl~ 127 (178)
..+.++++...++++|+|.|-.
T Consensus 168 ~~~~~~l~~~~~~~ai~~~~d~ 189 (267)
T cd06322 168 TAAQNILQANPDLDGIFAFGDD 189 (267)
T ss_pred HHHHHHHHhCCCCCEEEEcCCc
Confidence 2345666555578999998743
No 53
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=35.28 E-value=74 Score=25.90 Aligned_cols=20 Identities=25% Similarity=0.152 Sum_probs=14.1
Q ss_pred HHHHHHhCCCCcEEEEeCCCc
Q psy3672 33 SYVQDLLSNRKKVTAVHKANI 53 (178)
Q Consensus 33 AFe~A~~~~rk~Vt~vhKaNv 53 (178)
++| |+.||-++|++|+|..-
T Consensus 57 GlE-ALSRGA~~v~fVE~~~~ 76 (183)
T PF03602_consen 57 GLE-ALSRGAKSVVFVEKNRK 76 (183)
T ss_dssp HHH-HHHTT-SEEEEEES-HH
T ss_pred HHH-HHhcCCCeEEEEECCHH
Confidence 455 67888899999998654
No 54
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.11 E-value=2e+02 Score=22.81 Aligned_cols=23 Identities=4% Similarity=0.046 Sum_probs=16.3
Q ss_pred cHHHHHHHHHHHhCCCCcEEEEe
Q psy3672 27 DPCPRFSYVQDLLSNRKKVTAVH 49 (178)
Q Consensus 27 eRiar~AFe~A~~~~rk~Vt~vh 49 (178)
.+.++.|.++..++|.++|-++.
T Consensus 101 ~~~~~~a~~~l~~~g~~~i~~l~ 123 (269)
T cd06288 101 EQGGYDATRHLLAAGHRRIAFIN 123 (269)
T ss_pred HHHHHHHHHHHHHcCCceEEEEe
Confidence 35567777777777777888774
No 55
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=34.97 E-value=2.2e+02 Score=22.53 Aligned_cols=23 Identities=4% Similarity=-0.295 Sum_probs=15.7
Q ss_pred cHHHHHHHHHHHhCCCCcEEEEe
Q psy3672 27 DPCPRFSYVQDLLSNRKKVTAVH 49 (178)
Q Consensus 27 eRiar~AFe~A~~~~rk~Vt~vh 49 (178)
.+.++.+.++..++|.+++-++.
T Consensus 99 ~~~~~~~~~~l~~~g~~~i~~v~ 121 (259)
T cd01542 99 YGAGYELGEYLAQQGHKNIAYLG 121 (259)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEc
Confidence 45566666766777777877773
No 56
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=34.73 E-value=2.4e+02 Score=22.58 Aligned_cols=19 Identities=11% Similarity=0.254 Sum_probs=13.3
Q ss_pred HHHHHhhCCCCCcEEEeeC
Q psy3672 107 WTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 107 ~~~~LV~~P~~fDViv~~N 125 (178)
++..+++.+.+.|+|+|+|
T Consensus 167 ~~~~~l~~~~~~~ai~~~~ 185 (268)
T cd06270 167 AMQELLARGAPFTAVFCAN 185 (268)
T ss_pred HHHHHHhCCCCCCEEEEcC
Confidence 3445665555689999988
No 57
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=34.68 E-value=2.1e+02 Score=22.19 Aligned_cols=45 Identities=4% Similarity=-0.138 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCC
Q psy3672 28 PCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYP 73 (178)
Q Consensus 28 Riar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYp 73 (178)
...+.+.+++++.+.++|.+++-.+-.. ......+-+++..++++
T Consensus 104 ~~~~~~~~~l~~~g~~~i~~i~~~~~~~-~~~~~~~~~~~~~~~~~ 148 (264)
T cd01537 104 QAGYLAGEHLAEKGHRRIALLAGPLGSS-TARERVAGFKDALKEAG 148 (264)
T ss_pred HHHHHHHHHHHHhcCCcEEEEECCCCCC-cHHHHHHHHHHHHHHcC
Confidence 4666777777777777888886544322 22233444444444443
No 58
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=32.28 E-value=2.8e+02 Score=22.65 Aligned_cols=19 Identities=26% Similarity=0.242 Sum_probs=13.5
Q ss_pred HHHHHhhCCCCCcEEEeeC
Q psy3672 107 WTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 107 ~~~~LV~~P~~fDViv~~N 125 (178)
.+.++++.+.++|.|+|.|
T Consensus 180 ~~~~~l~~~~~~~ai~~~n 198 (280)
T cd06303 180 ATSDILSNNPDVDFIYACS 198 (280)
T ss_pred HHHHHHHhCCCCcEEEECC
Confidence 4556666555789999976
No 59
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=32.24 E-value=40 Score=23.45 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=20.3
Q ss_pred cccccHHHHHHHHHHHhCCCCcEEEEe
Q psy3672 23 EETIDPCPRFSYVQDLLSNRKKVTAVH 49 (178)
Q Consensus 23 ~~~~eRiar~AFe~A~~~~rk~Vt~vh 49 (178)
.+.+++.+++|.++|... ..+|+++|
T Consensus 12 ~~~~~~al~~a~~la~~~-~~~i~~l~ 37 (140)
T PF00582_consen 12 SEESRRALRFALELAKRS-GAEITLLH 37 (140)
T ss_dssp SHHHHHHHHHHHHHHHHH-TCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhh-CCeEEEEE
Confidence 456789999999999986 46677665
No 60
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.83 E-value=2.8e+02 Score=22.21 Aligned_cols=55 Identities=11% Similarity=0.029 Sum_probs=27.7
Q ss_pred EEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeE
Q psy3672 18 VSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWT 76 (178)
Q Consensus 18 ~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~ 76 (178)
+......+.+..+++..+.+. |+++|-++.=.+. ..+ -...+-+++..+++|+++
T Consensus 99 V~~d~~~~g~~~~~~l~~~~~--g~~~i~~i~g~~~-~~~-~~R~~g~~~~~~~~~~~~ 153 (271)
T cd06321 99 VTTDNVQAGEISCQYLADRLG--GKGNVAILNGPPV-SAV-LDRVAGCKAALAKYPGIK 153 (271)
T ss_pred eeechHHHHHHHHHHHHHHhC--CCceEEEEeCCCC-chH-HHHHHHHHHHHHhCCCcE
Confidence 334444555556655555432 5567776642222 212 233455566666777654
No 61
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=30.67 E-value=1.6e+02 Score=29.79 Aligned_cols=126 Identities=10% Similarity=-0.019 Sum_probs=70.4
Q ss_pred eeeeEEeeecccccHH---HHHHHHHHHhCCC-CcEEEE---eCCCccccccHHHHHHHHHHHhhCCCeEEEEEEEeeee
Q psy3672 14 VCDKVSLRYEETIDPC---PRFSYVQDLLSNR-KKVTAV---HKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIW 86 (178)
Q Consensus 14 ~~~~~~~~t~~~~eRi---ar~AFe~A~~~~r-k~Vt~v---hKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~~ 86 (178)
+..|+..+.....+.+ +..|-++|+..|- -||=+. ++.|.--.+...-++..+.+.+++|++.++-.+-
T Consensus 591 ~~aD~GvNi~PtaeqLa~IA~~aa~~ar~lGiePRVALLS~Sn~Gse~~k~~~~vreA~~llk~~~~~l~~dGemq---- 666 (752)
T PRK07232 591 FIADTYVNEDPTAEELAEIALMAAEEVRRFGIEPRVALLSHSNFGSSDSPSARKMREAVELLRERAPDLEVDGEMH---- 666 (752)
T ss_pred EEEeCeecCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEeccccCCCCCCcHHHHHHHHHHHHhhCCCcEEEEech----
Confidence 3445555555555555 4555677776553 357777 6666433233344444444445678876643322
Q ss_pred ccccccceeEEEeecccccHHH------HHHhhCC--CCCcEEEeeCCC-cccccccccccccccccccCccccccCCCC
Q psy3672 87 TTRDINVFIWTIRRIITVFNWT------RQIVSNP--HQFDVMVMPNLY-GNIFDVMVMPNLYGNIVDNLASDSVISRTG 157 (178)
Q Consensus 87 ~~~~~~~~i~~~~~~i~~Da~~------~~LV~~P--~~fDViv~~Nl~-GDILSDlaA~l~GglGl~psa~~~~ig~~~ 157 (178)
.|++. .+...+| +.-||+|.||+. |+|+.-+.-.+.|+..+.|-..
T Consensus 667 -----------------~D~Al~~~va~~K~p~s~vaG~ANVLIfPdLeaGNI~yKllq~l~g~~aiGpiL~-------- 721 (752)
T PRK07232 667 -----------------GDAALNEEIRKDLYPFSRLKGPANVLVMPNLEAANISYNLLKELGGGVTIGPILL-------- 721 (752)
T ss_pred -----------------HHHhCCHHHHHhhCCCCccCCcCCEEEeCCchhhHHHHHHHHHhcCCeEecceee--------
Confidence 13332 2233333 567899999996 9998888766655543333221
Q ss_pred ceecCcccccc
Q psy3672 158 SCQQSCDMVSE 168 (178)
Q Consensus 158 ~~fep~~~~~~ 168 (178)
++-.|+|+-+-
T Consensus 722 G~~~PV~~lSR 732 (752)
T PRK07232 722 GMAKPVHILTP 732 (752)
T ss_pred cCCCCeEECCC
Confidence 23567776653
No 62
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=29.24 E-value=2.9e+02 Score=21.92 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=13.9
Q ss_pred HHHHHHhhCCCCCcEEEeeC
Q psy3672 106 NWTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 106 a~~~~LV~~P~~fDViv~~N 125 (178)
....++.+....+|+|++.|
T Consensus 167 ~~~~~~l~~~~~~~ai~~~~ 186 (268)
T cd06273 167 AALRQLLEQPPRPTAVICGN 186 (268)
T ss_pred HHHHHHHcCCCCCCEEEEcC
Confidence 44556666555789999976
No 63
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.18 E-value=3e+02 Score=22.01 Aligned_cols=20 Identities=10% Similarity=0.107 Sum_probs=12.1
Q ss_pred HHHHHhhCCCCCcEEEeeCC
Q psy3672 107 WTRQIVSNPHQFDVMVMPNL 126 (178)
Q Consensus 107 ~~~~LV~~P~~fDViv~~Nl 126 (178)
.+..+++....+|.++|.|=
T Consensus 173 ~~~~~l~~~~~~~~i~~~~d 192 (273)
T cd06310 173 ITEDLLTANPDLKGIFGANE 192 (273)
T ss_pred HHHHHHHhCCCceEEEecCc
Confidence 33455544336898888763
No 64
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=29.04 E-value=2.9e+02 Score=21.86 Aligned_cols=23 Identities=13% Similarity=0.078 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeC
Q psy3672 28 PCPRFSYVQDLLSNRKKVTAVHK 50 (178)
Q Consensus 28 Riar~AFe~A~~~~rk~Vt~vhK 50 (178)
...+.|.++..+.|.++|.++.-
T Consensus 102 ~~g~~~~~~l~~~g~~~i~~i~~ 124 (264)
T cd01574 102 GGARLATEHLLELGHRTIAHVAG 124 (264)
T ss_pred HHHHHHHHHHHHCCCCEEEEEec
Confidence 34555556556667777777743
No 65
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=28.99 E-value=3.8e+02 Score=23.47 Aligned_cols=83 Identities=4% Similarity=-0.054 Sum_probs=43.5
Q ss_pred cHHHHHHHHHHHhCCCCcEEEEeCCCcccccc---HHHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEEEeeccc
Q psy3672 27 DPCPRFSYVQDLLSNRKKVTAVHKANIMKLGD---GLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRIIT 103 (178)
Q Consensus 27 eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~td---glf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~ 103 (178)
+.-++.|.++-.+.|.+++.++.-..-...+. ..|++.+++-.-.++ +.....+-++..++
T Consensus 160 ~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~----~~~i~~~~~~~~~g------------ 223 (333)
T COG1609 160 FAGAYLATEHLIELGHRRIAFIGGPLDSSASRERLEGYRAALREAGLPIN----PEWIVEGDFSEESG------------ 223 (333)
T ss_pred HHHHHHHHHHHHHCCCceEEEEeCCCccccHhHHHHHHHHHHHHCCCCCC----cceEEecCCChHHH------------
Confidence 45667777888888888888887664111111 233333332111220 11222111222222
Q ss_pred ccHHHHHHhhCCCC-CcEEEeeCC
Q psy3672 104 VFNWTRQIVSNPHQ-FDVMVMPNL 126 (178)
Q Consensus 104 ~Da~~~~LV~~P~~-fDViv~~Nl 126 (178)
-.++.++...+.. +|.++|.|=
T Consensus 224 -~~~~~~ll~~~~~~ptAif~~nD 246 (333)
T COG1609 224 -YEAAERLLARGEPRPTAIFCAND 246 (333)
T ss_pred -HHHHHHHHhcCCCCCcEEEEcCc
Confidence 4566677766555 999999874
No 66
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.97 E-value=3.2e+02 Score=21.88 Aligned_cols=20 Identities=5% Similarity=-0.012 Sum_probs=13.4
Q ss_pred HHHHHhhCCCCCcEEEeeCC
Q psy3672 107 WTRQIVSNPHQFDVMVMPNL 126 (178)
Q Consensus 107 ~~~~LV~~P~~fDViv~~Nl 126 (178)
.+.++++.+..+|.|+|+|-
T Consensus 167 ~~~~~l~~~~~~~ai~~~~d 186 (269)
T cd06293 167 AAAQLLARGDPPTAIFAASD 186 (269)
T ss_pred HHHHHHcCCCCCCEEEEcCc
Confidence 44566654446899999873
No 67
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=27.64 E-value=84 Score=22.05 Aligned_cols=20 Identities=10% Similarity=-0.149 Sum_probs=15.7
Q ss_pred ccHHHHHHHHHHHhCCCCcEE
Q psy3672 26 IDPCPRFSYVQDLLSNRKKVT 46 (178)
Q Consensus 26 ~eRiar~AFe~A~~~~rk~Vt 46 (178)
..++++.|+++|+++| .+|.
T Consensus 40 a~~L~~~~l~~a~~~~-~kv~ 59 (78)
T PF14542_consen 40 AKKLVEAALDYARENG-LKVV 59 (78)
T ss_dssp HHHHHHHHHHHHHHTT--EEE
T ss_pred HHHHHHHHHHHHHHCC-CEEE
Confidence 5689999999999986 4444
No 68
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=27.38 E-value=1.7e+02 Score=23.82 Aligned_cols=46 Identities=13% Similarity=0.031 Sum_probs=28.4
Q ss_pred eeEEeeecccccHHHHHHHHHHHhCCCC-cEEEEeCCCccccccHHHH
Q psy3672 16 DKVSLRYEETIDPCPRFSYVQDLLSNRK-KVTAVHKANIMKLGDGLFL 62 (178)
Q Consensus 16 ~~~~~~t~~~~eRiar~AFe~A~~~~rk-~Vt~vhKaNvlk~tdglf~ 62 (178)
...++++.-.++.+++.+.+-|...|-. .+.-+..-|+.. ..+-+.
T Consensus 6 I~gs~r~~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~-c~~c~~ 52 (207)
T COG0655 6 INGSPRSNGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKP-CTGCFA 52 (207)
T ss_pred EEecCCCCCcHHHHHHHHHHHHHHcCCEEEEEEecCCCccc-chHHHh
Confidence 4455666667888999999999887532 344444455444 334333
No 69
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=26.89 E-value=3.2e+02 Score=21.58 Aligned_cols=20 Identities=10% Similarity=0.212 Sum_probs=14.6
Q ss_pred HHHHHHhhCCCCCcEEEeeC
Q psy3672 106 NWTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 106 a~~~~LV~~P~~fDViv~~N 125 (178)
.++.+++.....+|+++|.|
T Consensus 170 ~~~~~~l~~~~~~~ai~~~~ 189 (268)
T cd06271 170 AAAAELLALPDRPTAIVCSS 189 (268)
T ss_pred HHHHHHHhCCCCCCEEEEcC
Confidence 45667776655789999987
No 70
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=26.81 E-value=3.8e+02 Score=22.46 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=14.4
Q ss_pred HHHHHHhh-CCCCCcEEEeeCC
Q psy3672 106 NWTRQIVS-NPHQFDVMVMPNL 126 (178)
Q Consensus 106 a~~~~LV~-~P~~fDViv~~Nl 126 (178)
..+.++++ +|.++|+|+|.|=
T Consensus 172 ~~~~~ll~~~~~~~~aI~~~~D 193 (302)
T TIGR02634 172 RIMENALTANDNKVDAVVASND 193 (302)
T ss_pred HHHHHHHHhCCCCccEEEECCC
Confidence 34556665 4568999999763
No 71
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.77 E-value=2.5e+02 Score=22.46 Aligned_cols=23 Identities=9% Similarity=-0.112 Sum_probs=15.8
Q ss_pred cHHHHHHHHHHHhCCCCcEEEEe
Q psy3672 27 DPCPRFSYVQDLLSNRKKVTAVH 49 (178)
Q Consensus 27 eRiar~AFe~A~~~~rk~Vt~vh 49 (178)
+...+.|.++..++|.++|.++.
T Consensus 103 ~~~~~~a~~~l~~~g~~~i~~i~ 125 (268)
T cd06277 103 YSGAYAATEYLIEKGHRKIGFVG 125 (268)
T ss_pred hHHHHHHHHHHHHCCCCcEEEEC
Confidence 34566666777777778887774
No 72
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=26.74 E-value=72 Score=22.66 Aligned_cols=28 Identities=4% Similarity=-0.013 Sum_probs=21.4
Q ss_pred ccccHHHHHHHHHHHhCCCCcEEEEeCCC
Q psy3672 24 ETIDPCPRFSYVQDLLSNRKKVTAVHKAN 52 (178)
Q Consensus 24 ~~~eRiar~AFe~A~~~~rk~Vt~vhKaN 52 (178)
+.+++++++|..+|... .-+|+++|=-+
T Consensus 10 ~~~~~~l~~a~~la~~~-~~~v~ll~v~~ 37 (132)
T cd01988 10 NTARDLLELAAALARAQ-NGEIIPLNVIE 37 (132)
T ss_pred hhHHHHHHHHHHHhhcC-CCeEEEEEEEe
Confidence 56889999999999875 45777776433
No 73
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.42 E-value=3.1e+02 Score=21.83 Aligned_cols=20 Identities=10% Similarity=0.114 Sum_probs=13.7
Q ss_pred HHHHHhhCCCCCcEEEeeCC
Q psy3672 107 WTRQIVSNPHQFDVMVMPNL 126 (178)
Q Consensus 107 ~~~~LV~~P~~fDViv~~Nl 126 (178)
.+.++++++...|+++|.|-
T Consensus 168 ~~~~~l~~~~~~~ai~~~~d 187 (270)
T cd06296 168 AAAELLALPERPTAIFAGND 187 (270)
T ss_pred HHHHHHhCCCCCcEEEEcCc
Confidence 44566666567888888864
No 74
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=25.92 E-value=58 Score=24.58 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=27.5
Q ss_pred ccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCC
Q psy3672 24 ETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPV 74 (178)
Q Consensus 24 ~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpd 74 (178)
...|||.|.|.+-=+.. |..+|.=|..+|++++++|..
T Consensus 24 keaERigr~AlKaGL~e-------------ieI~d~eL~~~FeeIa~RFrk 61 (92)
T PF07820_consen 24 KEAERIGRIALKAGLGE-------------IEISDAELQAAFEEIAARFRK 61 (92)
T ss_pred HHHHHHHHHHHHccccc-------------ccCCHHHHHHHHHHHHHHHhc
Confidence 45788888875433221 456788999999999998865
No 75
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=25.70 E-value=3.6e+02 Score=21.75 Aligned_cols=24 Identities=4% Similarity=-0.118 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCC
Q psy3672 28 PCPRFSYVQDLLSNRKKVTAVHKA 51 (178)
Q Consensus 28 Riar~AFe~A~~~~rk~Vt~vhKa 51 (178)
+.++.+.++..++|.+++.++.-.
T Consensus 98 ~a~~~~~~~l~~~g~~~i~~i~~~ 121 (270)
T cd01544 98 QAVEKALDYLLELGHTRIGFIGGE 121 (270)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCC
Confidence 345666666676777888777543
No 76
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=25.70 E-value=64 Score=21.57 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=17.2
Q ss_pred ccccHHHHHHHHHHHhCCCCcEE
Q psy3672 24 ETIDPCPRFSYVQDLLSNRKKVT 46 (178)
Q Consensus 24 ~~~eRiar~AFe~A~~~~rk~Vt 46 (178)
.=++.+++.|.+.|.+.+||.|+
T Consensus 35 ~Fi~~l~~~A~~~a~~~~rkti~ 57 (65)
T PF00808_consen 35 EFIQYLAKEANEIAQRDKRKTIT 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHTTSSEE-
T ss_pred HHHHHHHHHHHHHHHHcCCCccC
Confidence 33567888999999988877654
No 77
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=25.65 E-value=2.8e+02 Score=22.10 Aligned_cols=22 Identities=5% Similarity=0.113 Sum_probs=15.4
Q ss_pred HHHHHHhhCCCCCcEEEeeCCC
Q psy3672 106 NWTRQIVSNPHQFDVMVMPNLY 127 (178)
Q Consensus 106 a~~~~LV~~P~~fDViv~~Nl~ 127 (178)
.++.++++++...|+++|.|-.
T Consensus 161 ~~~~~~l~~~~~~~ai~~~~d~ 182 (261)
T cd06272 161 NAAKKLLKESDLPTAIICGSYD 182 (261)
T ss_pred HHHHHHHcCCCCCCEEEECCcH
Confidence 3445666666678999998853
No 78
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=25.61 E-value=3.3e+02 Score=23.52 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=14.1
Q ss_pred HHHHHHhh-CCCCCcEEEeeCCC
Q psy3672 106 NWTRQIVS-NPHQFDVMVMPNLY 127 (178)
Q Consensus 106 a~~~~LV~-~P~~fDViv~~Nl~ 127 (178)
..+..++. +|.++|+|+|.|=.
T Consensus 199 ~~~~~lL~~~~~~~~aI~~~nD~ 221 (330)
T PRK10355 199 KIMENALTANNNKIDAVVASNDA 221 (330)
T ss_pred HHHHHHHHhCCCCccEEEECCCc
Confidence 34455554 55568999997643
No 79
>PRK09982 universal stress protein UspD; Provisional
Probab=25.35 E-value=90 Score=23.45 Aligned_cols=27 Identities=11% Similarity=-0.033 Sum_probs=21.1
Q ss_pred ccccHHHHHHHHHHHhCCCCcEEEEeCC
Q psy3672 24 ETIDPCPRFSYVQDLLSNRKKVTAVHKA 51 (178)
Q Consensus 24 ~~~eRiar~AFe~A~~~~rk~Vt~vhKa 51 (178)
+.+++.+++|+++|++.+ -+++++|=-
T Consensus 14 ~~s~~al~~A~~lA~~~~-a~l~llhV~ 40 (142)
T PRK09982 14 EEDALLVNKALELARHND-AHLTLIHID 40 (142)
T ss_pred cchHHHHHHHHHHHHHhC-CeEEEEEEc
Confidence 347899999999998764 578888743
No 80
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=25.20 E-value=3.5e+02 Score=21.44 Aligned_cols=22 Identities=9% Similarity=-0.014 Sum_probs=15.6
Q ss_pred cHHHHHHhhCCCCCcEEEeeCC
Q psy3672 105 FNWTRQIVSNPHQFDVMVMPNL 126 (178)
Q Consensus 105 Da~~~~LV~~P~~fDViv~~Nl 126 (178)
.....+++..+..+|.++|.|-
T Consensus 163 ~~~~~~~l~~~~~~~ai~~~~d 184 (260)
T cd06286 163 ERIGHQLLKMKDRPDAIFTGSD 184 (260)
T ss_pred HHHHHHHHcCCCCCCEEEEcch
Confidence 3455667766667898888874
No 81
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=25.09 E-value=39 Score=23.60 Aligned_cols=27 Identities=4% Similarity=-0.116 Sum_probs=20.4
Q ss_pred EeeecccccHHHHHHHHHHHhCCCCcE
Q psy3672 19 SLRYEETIDPCPRFSYVQDLLSNRKKV 45 (178)
Q Consensus 19 ~~~t~~~~eRiar~AFe~A~~~~rk~V 45 (178)
.-..++-++.+++.|.++|+.|++++|
T Consensus 29 ~~~~e~fv~~v~~~a~~lAkHr~~~tv 55 (72)
T cd07981 29 LEIADDFVDDVVEDACRLAKHRKSDTL 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 334556678899999999998876654
No 82
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=25.04 E-value=86 Score=24.48 Aligned_cols=24 Identities=25% Similarity=0.094 Sum_probs=21.1
Q ss_pred ccHHHHHHHHHHHhCCCCcEEEEe
Q psy3672 26 IDPCPRFSYVQDLLSNRKKVTAVH 49 (178)
Q Consensus 26 ~eRiar~AFe~A~~~~rk~Vt~vh 49 (178)
++.+.+.+-++|++++.++||-|+
T Consensus 7 a~aii~~i~~~A~~~~a~~V~~V~ 30 (115)
T COG0375 7 AQAIIELIEEQAEKHGAKRVTAVW 30 (115)
T ss_pred HHHHHHHHHHHHHHcCCceEEEEE
Confidence 567899999999999988888876
No 83
>PRK09653 eutD phosphotransacetylase; Reviewed
Probab=25.00 E-value=1.4e+02 Score=26.49 Aligned_cols=107 Identities=14% Similarity=0.009 Sum_probs=57.4
Q ss_pred eeeeEEeeecccccH---HHHHHHHHHHhCCCC-cEEEE---eCCCccccccHHHHHHHHHHHhhCCCeEEEEEEEeeee
Q psy3672 14 VCDKVSLRYEETIDP---CPRFSYVQDLLSNRK-KVTAV---HKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIW 86 (178)
Q Consensus 14 ~~~~~~~~t~~~~eR---iar~AFe~A~~~~rk-~Vt~v---hKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~~ 86 (178)
...|+..+.+...+. |+..|.++|+.-|-. ||-+. +|.+---.+...-++..+-+.+++|+..++-.+-
T Consensus 162 ~l~D~gvN~~P~~e~l~~ia~~a~~~ar~lG~~PkVAlLs~s~~Gs~~~~~~~~~~ea~~ll~~~~~~~~vdGel~---- 237 (324)
T PRK09653 162 IFADCAVNPNPTAEQLAEIAINSAETAKAFGIDPKVAMLSFSTKGSAKGPEVDKVQEATEIAKELAPDLKIDGELQ---- 237 (324)
T ss_pred EEEeCeEeCCcCHHHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCCCCcHHHHHHHHHHHHhhCCCCeEEecch----
Confidence 344555555544554 455567788765532 34433 3344221233344554443334688866653332
Q ss_pred ccccccceeEEEeecccccHHH------HHHhhCC--CCCcEEEeeCCC-cccccccccccccc
Q psy3672 87 TTRDINVFIWTIRRIITVFNWT------RQIVSNP--HQFDVMVMPNLY-GNIFDVMVMPNLYG 141 (178)
Q Consensus 87 ~~~~~~~~i~~~~~~i~~Da~~------~~LV~~P--~~fDViv~~Nl~-GDILSDlaA~l~Gg 141 (178)
.|++. .+...+| ++-||+|.||+. |+|+--+.-.+.|+
T Consensus 238 -----------------~D~A~~~~~~~~k~~~s~v~G~AnvLi~P~l~agNi~yK~l~~~~~~ 284 (324)
T PRK09653 238 -----------------FDAAFVPEVAAKKAPGSPVAGKANVFVFPSLEAGNIGYKIAQRLGGF 284 (324)
T ss_pred -----------------HHHhCCHHHHHhhCCCCccCCcCCEEEcCChHHhHHHHHHHHHhcCC
Confidence 14332 2333333 577999999996 88877665555444
No 84
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=24.77 E-value=4.3e+02 Score=27.43 Aligned_cols=100 Identities=15% Similarity=0.078 Sum_probs=55.9
Q ss_pred EEeeecccccHHHHHHHHHHHhCCCCcEEEEe--CCCcccc--ccHHHHHHHHHHHhhCCCeEEEEEEEee---------
Q psy3672 18 VSLRYEETIDPCPRFSYVQDLLSNRKKVTAVH--KANIMKL--GDGLFLNSCKEMAKLYPVWTNRKMITGF--------- 84 (178)
Q Consensus 18 ~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vh--KaNvlk~--tdglf~~i~~eva~eYpdv~~~~~~v~~--------- 84 (178)
+.+-+..++++++|.|.++|.+. +-+.|++| -.+-... -+..-...+.++++++-. ++....-..
T Consensus 253 vcI~~~~~~e~liR~a~RlA~~~-~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lGa-e~~~l~~~dv~~~i~~ya 330 (890)
T COG2205 253 VCISGSPGSEKLIRRAARLASRL-HAKWTAVYVETPELHRLSEKEARRLHENLRLAEELGA-EIVTLYGGDVAKAIARYA 330 (890)
T ss_pred EEECCCCchHHHHHHHHHHHHHh-CCCeEEEEEeccccccccHHHHHHHHHHHHHHHHhCC-eEEEEeCCcHHHHHHHHH
Confidence 33445677999999999999887 45666654 3333211 233444556667776544 222211100
Q ss_pred ---------eeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeC
Q psy3672 85 ---------IWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 85 ---------~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~N 125 (178)
+++...- -|.. ..-.+.+.+|++.+.++||-+.++
T Consensus 331 ~~~~~TkiViG~~~~~---rw~~---~~~~~l~~~L~~~~~~idv~ii~~ 374 (890)
T COG2205 331 REHNATKIVIGRSRRS---RWRR---LFKGSLADRLAREAPGIDVHIVAL 374 (890)
T ss_pred HHcCCeeEEeCCCcch---HHHH---HhcccHHHHHHhcCCCceEEEeeC
Confidence 0111111 1111 111567789999999999887776
No 85
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=24.23 E-value=3.7e+02 Score=22.34 Aligned_cols=22 Identities=0% Similarity=-0.072 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhCCCCcEEEEe
Q psy3672 28 PCPRFSYVQDLLSNRKKVTAVH 49 (178)
Q Consensus 28 Riar~AFe~A~~~~rk~Vt~vh 49 (178)
...+.|.++-.++|.+++.++.
T Consensus 160 ~~~~~a~~~L~~~G~~~I~~i~ 181 (327)
T PRK10423 160 LGGDLATQYLIDKGYTRIACIT 181 (327)
T ss_pred HHHHHHHHHHHHcCCCeEEEEe
Confidence 4566677777777888887773
No 86
>PF08883 DOPA_dioxygen: Dopa 4,5-dioxygenase family; InterPro: IPR014980 This family of proteins is related to P87064 from SWISSPROT a DOPA 4,5-dioxygenase that is involved in synthesis of betalain. DOPA-dioxygenase is the key enzyme involved in betalain biosynthesis. It converts 3,4-dihydroxyphenylalanine to betalamic acid, a yellow chromophore. ; PDB: 2NYH_A 2P8I_C.
Probab=24.13 E-value=88 Score=23.88 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=20.2
Q ss_pred cHHHHHHhhCCCCCcEEEeeCCCcccccc
Q psy3672 105 FNWTRQIVSNPHQFDVMVMPNLYGNIFDV 133 (178)
Q Consensus 105 Da~~~~LV~~P~~fDViv~~Nl~GDILSD 133 (178)
+....+|..|-++++|+|-||- ||=+.|
T Consensus 58 ~~~v~Wl~~nrg~LsVLiHP~T-g~dl~D 85 (104)
T PF08883_consen 58 AEVVPWLMLNRGGLSVLIHPNT-GDDLRD 85 (104)
T ss_dssp HHHHHHHHHH-TT--EEEEEES-S-HHHH
T ss_pred HHHHHHHHHhCCCceEEEcCCC-Cchhhh
Confidence 7888999999999999999998 664443
No 87
>PRK05713 hypothetical protein; Provisional
Probab=23.43 E-value=4.7e+02 Score=22.53 Aligned_cols=53 Identities=8% Similarity=-0.031 Sum_probs=32.8
Q ss_pred ccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEE
Q psy3672 24 ETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNR 78 (178)
Q Consensus 24 ~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~ 78 (178)
.|+-.+.-.+-+++.+...++|++++ ++-- ..|-+|++..+++++++|.+++.
T Consensus 202 tGiaP~~s~l~~~~~~~~~~~v~l~~-g~r~-~~d~~~~~el~~l~~~~~~~~~~ 254 (312)
T PRK05713 202 TGLAPLWGILREALRQGHQGPIRLLH-LARD-SAGHYLAEPLAALAGRHPQLSVE 254 (312)
T ss_pred cChhHHHHHHHHHHhcCCCCcEEEEE-EcCc-hHHhhhHHHHHHHHHHCCCcEEE
Confidence 35555555554444333235788887 2222 24667889999998889987764
No 88
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=22.39 E-value=3.7e+02 Score=20.79 Aligned_cols=44 Identities=5% Similarity=-0.030 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhC
Q psy3672 28 PCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLY 72 (178)
Q Consensus 28 Riar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eY 72 (178)
...+.+.++..++|.++|-++.=.+-... .-...+.+++..+++
T Consensus 102 ~~g~~~~~~l~~~g~~~i~~i~~~~~~~~-~~~r~~g~~~~~~~~ 145 (264)
T cd06267 102 AGAYLAVEHLIELGHRRIAFIGGPPDLST-ARERLEGYREALEEA 145 (264)
T ss_pred HHHHHHHHHHHHCCCceEEEecCCCccch-HHHHHHHHHHHHHHc
Confidence 35566666666667778877742222221 122334455555443
No 89
>COG3681 L-cysteine desulfidase [Amino acid transport and metabolism]
Probab=22.23 E-value=41 Score=31.28 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=40.6
Q ss_pred cHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCC
Q psy3672 105 FNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRT 156 (178)
Q Consensus 105 Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~ 156 (178)
-.+...|-..|++-|++|.||++=+-+|.-+ +..|=.|+-|.+....+|+.
T Consensus 38 AkAa~el~~t~erI~a~vs~nlmKNg~gVtV-PgTgmvGl~~AaamGlLgg~ 88 (433)
T COG3681 38 AKAAAELGGTPERIEAWVSPNLMKNGLGVTV-PGTGMVGLPIAAAMGLLGGD 88 (433)
T ss_pred HHHHHHhCCChhHeeEEeccchhhcceeeec-CCCCcccCcHHHHhhhhccc
Confidence 3456788889999999999999999999554 44588888888876666654
No 90
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=22.11 E-value=93 Score=22.91 Aligned_cols=26 Identities=8% Similarity=0.101 Sum_probs=20.3
Q ss_pred ccccHHHHHHHHHHHhCCCCcEEEEeC
Q psy3672 24 ETIDPCPRFSYVQDLLSNRKKVTAVHK 50 (178)
Q Consensus 24 ~~~eRiar~AFe~A~~~~rk~Vt~vhK 50 (178)
+.+++.+++|.++|...+ .+|+++|=
T Consensus 10 ~~s~~al~~a~~~a~~~~-~~l~ll~v 35 (146)
T cd01989 10 KKSKNALKWALDNLATKG-QTIVLVHV 35 (146)
T ss_pred cccHHHHHHHHHhccCCC-CcEEEEEe
Confidence 468899999999998764 57877764
No 91
>PRK15005 universal stress protein F; Provisional
Probab=21.68 E-value=1e+02 Score=22.54 Aligned_cols=23 Identities=4% Similarity=0.014 Sum_probs=17.2
Q ss_pred ccHHHHHHHHHHHhCCCCcEEEEe
Q psy3672 26 IDPCPRFSYVQDLLSNRKKVTAVH 49 (178)
Q Consensus 26 ~eRiar~AFe~A~~~~rk~Vt~vh 49 (178)
+++.+++|+++|...+ .+|+++|
T Consensus 17 ~~~a~~~a~~la~~~~-~~l~ll~ 39 (144)
T PRK15005 17 TQRVISHVEAEAKIDD-AEVHFLT 39 (144)
T ss_pred HHHHHHHHHHHHhccC-CeEEEEE
Confidence 4688899999998764 5677655
No 92
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=21.68 E-value=4e+02 Score=20.82 Aligned_cols=83 Identities=11% Similarity=0.079 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhC--CCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEEEeeccccc
Q psy3672 28 PCPRFSYVQDLLS--NRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRIITVF 105 (178)
Q Consensus 28 Riar~AFe~A~~~--~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~~D 105 (178)
...+.+.++..++ |.+++.++.-..-.. ......+-+++..++...++...... .-+...+. -
T Consensus 105 ~~~~~~~~~l~~~~~g~~~i~~i~~~~~~~-~~~~r~~gf~~~~~~~~~~~~~~~~~-~~~~~~~~-------------~ 169 (267)
T cd01536 105 EAGRLAGEYLAKLLGGKGKVAIIEGPPGSS-NAQERVKGFRDALKEYPDIEIVAVQD-GNWDREKA-------------L 169 (267)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEcccccc-hHHHHHHHHHHHHHhCCCcEEEEEec-CCCcHHHH-------------H
Confidence 3444455555444 566777664322212 22345555666555543333322111 00000000 2
Q ss_pred HHHHHHhhCCCCCcEEEeeC
Q psy3672 106 NWTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 106 a~~~~LV~~P~~fDViv~~N 125 (178)
..+.++++...+++++++.|
T Consensus 170 ~~~~~~~~~~~~~~~i~~~~ 189 (267)
T cd01536 170 QAMEDLLQANPDIDAIFAAN 189 (267)
T ss_pred HHHHHHHHhCCCccEEEEec
Confidence 35566666544688999987
No 93
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=21.53 E-value=1e+02 Score=28.95 Aligned_cols=25 Identities=4% Similarity=-0.142 Sum_probs=17.4
Q ss_pred ccHHHHHHHHHHHhCCCCcEEEEeCC
Q psy3672 26 IDPCPRFSYVQDLLSNRKKVTAVHKA 51 (178)
Q Consensus 26 ~eRiar~AFe~A~~~~rk~Vt~vhKa 51 (178)
--|++|-.|++|+.+ .-.+.+++--
T Consensus 229 GaRlVRelF~lArek-aPsIIFiDEI 253 (406)
T COG1222 229 GARLVRELFELAREK-APSIIFIDEI 253 (406)
T ss_pred chHHHHHHHHHHhhc-CCeEEEEech
Confidence 358899999999876 3456666543
No 94
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=21.51 E-value=66 Score=22.24 Aligned_cols=26 Identities=19% Similarity=0.013 Sum_probs=21.0
Q ss_pred ecccccHHHHHHHHHHHhCCCCcEEE
Q psy3672 22 YEETIDPCPRFSYVQDLLSNRKKVTA 47 (178)
Q Consensus 22 t~~~~eRiar~AFe~A~~~~rk~Vt~ 47 (178)
-+...+.+++.|.+++...+|++||.
T Consensus 32 ~e~rl~~i~~~A~k~~~hakRktlt~ 57 (65)
T smart00803 32 VEYRIKEIVQEALKFMRHSKRTTLTT 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeecH
Confidence 34557889999999999888888774
No 95
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.24 E-value=4.1e+02 Score=20.88 Aligned_cols=24 Identities=8% Similarity=0.009 Sum_probs=17.1
Q ss_pred ccHHHHHHHHHHHhCCCCcEEEEe
Q psy3672 26 IDPCPRFSYVQDLLSNRKKVTAVH 49 (178)
Q Consensus 26 ~eRiar~AFe~A~~~~rk~Vt~vh 49 (178)
-.+..+.+.++..++|.++|.++.
T Consensus 99 ~~~~g~~~~~~l~~~g~~~i~~i~ 122 (266)
T cd06278 99 NYEAGRLAAELLLAKGCRRIAFIG 122 (266)
T ss_pred hHHHHHHHHHHHHHCCCceEEEEc
Confidence 345666677777777778888885
No 96
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.78 E-value=4.4e+02 Score=21.06 Aligned_cols=22 Identities=9% Similarity=-0.109 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhCCCCcEEEEeC
Q psy3672 29 CPRFSYVQDLLSNRKKVTAVHK 50 (178)
Q Consensus 29 iar~AFe~A~~~~rk~Vt~vhK 50 (178)
..+.|.++..++|.+++.++..
T Consensus 96 ~g~~~~~~l~~~g~~~i~~i~~ 117 (265)
T cd01543 96 IGRMAAEHFLERGFRHFAFYGL 117 (265)
T ss_pred HHHHHHHHHHHCCCcEEEEEcC
Confidence 4455556666677778887753
No 97
>KOG3040|consensus
Probab=20.73 E-value=2.1e+02 Score=25.21 Aligned_cols=104 Identities=16% Similarity=0.097 Sum_probs=68.1
Q ss_pred eeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHh-hCCCeEEEEEEEeeeeccccccc
Q psy3672 15 CDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAK-LYPVWTNRKMITGFIWTTRDINV 93 (178)
Q Consensus 15 ~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~-eYpdv~~~~~~v~~~~~~~~~~~ 93 (178)
|+-+..-.+.=+-.....||+.-++..+-.+..+||+--.|..+|+-....--++. ||.. ..+-..+ ||+
T Consensus 112 ~VViglape~F~y~~ln~AFrvL~e~~k~~LIai~kgryykr~~Gl~lgpG~fv~aLeyat-g~~a~vv--------GKP 182 (262)
T KOG3040|consen 112 CVVIGLAPEGFSYQRLNRAFRVLLEMKKPLLIAIGKGRYYKRVDGLCLGPGPFVAALEYAT-GCEATVV--------GKP 182 (262)
T ss_pred eEEEecCcccccHHHHHHHHHHHHcCCCCeEEEecCceeeeeccccccCchHHHHHhhhcc-CceEEEe--------cCC
Confidence 33344444444556677899999987556799999999999999999988776664 7863 2332334 222
Q ss_pred eeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCccccccc
Q psy3672 94 FIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVM 134 (178)
Q Consensus 94 ~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDl 134 (178)
+-.+ . ..+.+-+=.+|+.- ||+-..+.+|+..-+
T Consensus 183 ~~~f----F--e~al~~~gv~p~~a-VMIGDD~~dDvgGAq 216 (262)
T KOG3040|consen 183 SPFF----F--ESALQALGVDPEEA-VMIGDDLNDDVGGAQ 216 (262)
T ss_pred CHHH----H--HHHHHhcCCChHHh-eEEccccccchhhHh
Confidence 1100 0 44555555688877 999887777775433
No 98
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=20.40 E-value=3.5e+02 Score=19.74 Aligned_cols=55 Identities=5% Similarity=-0.046 Sum_probs=33.4
Q ss_pred cccHHHHHHHHHHHhCCCCcEEEE-eCCCccccccHHHHHHHHHHHhhCCCeEEEEEEE
Q psy3672 25 TIDPCPRFSYVQDLLSNRKKVTAV-HKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMIT 82 (178)
Q Consensus 25 ~~eRiar~AFe~A~~~~rk~Vt~v-hKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v 82 (178)
...+-.|-.|..+++++ +.+.+. ++.+ .+ .+...+...++++++++.+++....+
T Consensus 6 ~~~~~~~~~~~~~l~~~-~~vvv~f~a~w-C~-~C~~~~~~l~~la~~~~~i~~~~vd~ 61 (113)
T cd02975 6 EDRKALKEEFFKEMKNP-VDLVVFSSKEG-CQ-YCEVTKQLLEELSELSDKLKLEIYDF 61 (113)
T ss_pred HHHHHHHHHHHHHhCCC-eEEEEEeCCCC-CC-ChHHHHHHHHHHHHhcCceEEEEEeC
Confidence 34455666666667664 334333 4433 23 45678888888888887777665444
No 99
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=20.20 E-value=3e+02 Score=19.17 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=13.3
Q ss_pred HHHHHHHHhCCCCcEEEEeCC
Q psy3672 31 RFSYVQDLLSNRKKVTAVHKA 51 (178)
Q Consensus 31 r~AFe~A~~~~rk~Vt~vhKa 51 (178)
..+..+|+..+..+|+.++.+
T Consensus 32 ~~~~~l~~~~~~~~v~~vD~s 52 (124)
T TIGR02469 32 SITIEAARLVPNGRVYAIERN 52 (124)
T ss_pred HHHHHHHHHCCCceEEEEcCC
Confidence 345566665444679998844
Done!