Query psy3672
Match_columns 178
No_of_seqs 115 out of 1115
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 22:41:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3672.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3672hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x0l_A Homoisocitrate dehydrog 100.0 4.4E-50 1.5E-54 354.0 8.1 137 3-164 123-259 (333)
2 3flk_A Tartrate dehydrogenase/ 100.0 3E-49 1E-53 352.1 8.1 137 3-164 140-284 (364)
3 1w0d_A 3-isopropylmalate dehyd 100.0 3.5E-49 1.2E-53 348.7 7.8 136 3-164 128-271 (337)
4 3blx_A Isocitrate dehydrogenas 100.0 7.4E-49 2.5E-53 348.1 8.2 137 3-164 135-273 (349)
5 3ty4_A Probable homoisocitrate 100.0 1.1E-48 3.8E-53 348.8 8.0 137 3-164 136-292 (366)
6 3blx_B Isocitrate dehydrogenas 100.0 1.6E-48 5.6E-53 346.4 8.7 137 3-164 141-281 (354)
7 3udu_A 3-isopropylmalate dehyd 100.0 1.4E-48 4.9E-53 347.5 7.6 135 3-164 146-281 (361)
8 1cnz_A IPMDH, IMDH, protein (3 100.0 5.9E-48 2E-52 343.7 7.2 135 3-164 144-284 (363)
9 1vlc_A 3-isopropylmalate dehyd 100.0 5.8E-48 2E-52 344.2 6.9 134 3-164 152-286 (366)
10 3vmk_A 3-isopropylmalate dehyd 100.0 6.6E-48 2.2E-52 344.7 7.1 135 3-164 153-293 (375)
11 2y3z_A 3-isopropylmalate dehyd 100.0 4.4E-48 1.5E-52 344.2 5.9 135 3-164 141-276 (359)
12 1a05_A IPMDH, IMDH, 3-isopropy 100.0 8E-48 2.7E-52 342.3 7.4 135 3-164 139-278 (358)
13 2d1c_A Isocitrate dehydrogenas 100.0 1.3E-47 4.5E-52 352.2 8.6 137 3-164 143-280 (496)
14 2e0c_A 409AA long hypothetical 100.0 2.4E-47 8.1E-52 344.2 8.3 143 12-164 185-330 (409)
15 3u1h_A 3-isopropylmalate dehyd 100.0 1.8E-47 6.3E-52 343.2 7.1 135 3-164 161-300 (390)
16 2iv0_A Isocitrate dehydrogenas 100.0 2.6E-47 9E-52 344.2 7.9 145 12-164 185-333 (412)
17 2d4v_A Isocitrate dehydrogenas 100.0 4.8E-47 1.6E-51 343.9 9.5 147 12-164 192-352 (429)
18 3dms_A Isocitrate dehydrogenas 100.0 1.8E-47 6.3E-52 346.5 6.1 144 12-164 202-349 (427)
19 1tyo_A Isocitrate dehydrogenas 100.0 3E-47 1E-51 345.8 7.5 144 12-164 195-343 (435)
20 3r8w_A 3-isopropylmalate dehyd 100.0 3.5E-47 1.2E-51 342.8 7.1 135 3-164 180-321 (405)
21 1hqs_A Isocitrate dehydrogenas 100.0 4.5E-47 1.6E-51 343.6 6.7 148 12-164 183-345 (423)
22 1wpw_A 3-isopropylmalate dehyd 100.0 8E-47 2.7E-51 333.6 7.3 134 3-164 122-256 (336)
23 2uxq_A Isocitrate dehydrogenas 100.0 1.1E-44 3.9E-49 325.9 6.1 125 13-164 173-305 (402)
24 1lwd_A Isocitrate dehydrogenas 100.0 4.3E-44 1.5E-48 323.1 6.0 125 13-164 176-309 (413)
25 2qfy_A Isocitrate dehydrogenas 100.0 5.8E-44 2E-48 323.5 5.5 119 19-164 198-325 (427)
26 3us8_A Isocitrate dehydrogenas 100.0 1E-43 3.4E-48 322.0 6.9 124 13-164 198-330 (427)
27 1zor_A Isocitrate dehydrogenas 100.0 8.1E-44 2.8E-48 320.0 5.6 125 13-164 172-303 (399)
28 4aoy_A Isocitrate dehydrogenas 100.0 9.1E-43 3.1E-47 313.8 8.0 124 14-164 175-306 (402)
29 3ksm_A ABC-type sugar transpor 82.8 2.5 8.5E-05 32.7 5.9 83 28-125 109-195 (276)
30 2rjo_A Twin-arginine transloca 69.0 14 0.00048 29.7 7.0 83 28-125 120-205 (332)
31 3l6u_A ABC-type sugar transpor 68.4 39 0.0013 26.1 9.7 97 15-126 105-204 (293)
32 2fn9_A Ribose ABC transporter, 65.5 27 0.00092 27.1 7.8 92 18-125 103-199 (290)
33 3l49_A ABC sugar (ribose) tran 65.3 10 0.00035 29.5 5.3 48 28-76 109-158 (291)
34 3m9w_A D-xylose-binding peripl 64.2 25 0.00086 27.8 7.5 85 27-125 107-196 (313)
35 3k9c_A Transcriptional regulat 63.7 29 0.00099 27.2 7.7 83 27-125 111-193 (289)
36 2x7x_A Sensor protein; transfe 60.9 20 0.0007 28.7 6.5 83 29-126 113-197 (325)
37 3cs3_A Sugar-binding transcrip 60.3 50 0.0017 25.5 8.5 81 28-125 104-185 (277)
38 2zqe_A MUTS2 protein; alpha/be 59.6 19 0.00064 24.8 5.2 55 17-76 8-62 (83)
39 2af4_C Phosphate acetyltransfe 59.5 10 0.00035 32.4 4.6 91 23-134 180-284 (333)
40 1td9_A Phosphate acetyltransfe 57.6 27 0.00092 29.6 6.9 92 23-135 181-285 (329)
41 3egc_A Putative ribose operon 57.6 36 0.0012 26.5 7.2 84 27-125 110-194 (291)
42 1tjy_A Sugar transport protein 56.8 49 0.0017 26.4 8.1 85 27-126 110-198 (316)
43 1r5j_A Putative phosphotransac 56.4 28 0.00095 29.5 6.8 94 22-136 184-290 (337)
44 3d02_A Putative LACI-type tran 55.7 18 0.00061 28.3 5.1 85 27-125 110-197 (303)
45 1gud_A ALBP, D-allose-binding 55.3 38 0.0013 26.5 7.1 81 29-125 117-201 (288)
46 2ioy_A Periplasmic sugar-bindi 55.0 44 0.0015 26.0 7.3 81 29-125 108-191 (283)
47 4hc4_A Protein arginine N-meth 54.9 13 0.00045 32.4 4.6 16 37-52 101-116 (376)
48 3miz_A Putative transcriptiona 54.5 75 0.0026 24.8 9.2 84 27-125 116-205 (301)
49 3fdx_A Putative filament prote 54.0 23 0.00079 24.6 5.0 25 26-51 16-40 (143)
50 3o74_A Fructose transport syst 53.4 46 0.0016 25.3 7.1 83 27-125 105-188 (272)
51 1yco_A Branched-chain phosphot 52.4 29 0.00099 29.1 6.2 96 16-136 117-232 (279)
52 3gyb_A Transcriptional regulat 51.2 36 0.0012 26.2 6.2 82 27-125 103-184 (280)
53 1vmi_A Putative phosphate acet 51.2 16 0.00056 31.5 4.5 91 23-134 187-291 (355)
54 2h3h_A Sugar ABC transporter, 50.8 63 0.0021 25.5 7.7 82 29-126 108-191 (313)
55 3d8u_A PURR transcriptional re 50.7 76 0.0026 24.2 8.0 24 27-50 105-128 (275)
56 3k4h_A Putative transcriptiona 48.7 50 0.0017 25.5 6.7 83 28-125 117-200 (292)
57 3gbv_A Putative LACI-family tr 44.2 1.1E+02 0.0036 23.6 8.5 21 106-126 189-209 (304)
58 3g1w_A Sugar ABC transporter; 43.9 71 0.0024 24.8 7.0 83 28-126 111-196 (305)
59 3rot_A ABC sugar transporter, 43.5 1E+02 0.0035 24.0 7.8 97 28-144 114-212 (297)
60 3qk7_A Transcriptional regulat 43.1 68 0.0023 25.1 6.7 20 106-125 176-195 (294)
61 3dbi_A Sugar-binding transcrip 42.6 57 0.0019 26.1 6.3 84 27-125 166-250 (338)
62 3g85_A Transcriptional regulat 40.5 65 0.0022 24.8 6.2 20 106-125 177-196 (289)
63 3kke_A LACI family transcripti 40.4 75 0.0026 24.9 6.6 24 27-50 116-139 (303)
64 3jvd_A Transcriptional regulat 40.1 1.3E+02 0.0046 24.1 8.3 80 27-125 159-239 (333)
65 3gv0_A Transcriptional regulat 39.7 59 0.002 25.3 5.9 85 27-125 112-196 (288)
66 3cis_A Uncharacterized protein 39.1 62 0.0021 25.8 6.0 26 24-50 182-207 (309)
67 3c3k_A Alanine racemase; struc 38.3 1.4E+02 0.0046 23.1 8.9 23 28-50 110-132 (285)
68 3qd7_X Uncharacterized protein 37.9 67 0.0023 24.2 5.7 63 14-76 48-111 (137)
69 2iks_A DNA-binding transcripti 37.5 1.4E+02 0.0048 23.0 8.6 82 28-125 124-205 (293)
70 2h0a_A TTHA0807, transcription 37.2 97 0.0033 23.6 6.7 24 27-50 99-122 (276)
71 1dbq_A Purine repressor; trans 34.3 61 0.0021 25.0 5.1 20 106-125 176-195 (289)
72 3brs_A Periplasmic binding pro 33.6 99 0.0034 23.7 6.2 82 28-125 115-198 (289)
73 3dlo_A Universal stress protei 33.4 43 0.0015 24.2 3.8 26 24-50 36-61 (155)
74 3e3m_A Transcriptional regulat 33.1 1.5E+02 0.0051 23.9 7.5 20 106-125 239-258 (355)
75 3brq_A HTH-type transcriptiona 32.2 1E+02 0.0034 23.6 6.0 20 106-125 189-208 (296)
76 3k01_A Acarbose/maltose bindin 32.2 1E+02 0.0035 25.3 6.4 44 37-82 22-65 (412)
77 2rgy_A Transcriptional regulat 31.3 1.1E+02 0.0036 23.8 6.1 23 28-50 114-136 (290)
78 3h5o_A Transcriptional regulat 30.0 1.4E+02 0.0048 23.8 6.7 20 106-125 228-247 (339)
79 3tb6_A Arabinose metabolism tr 28.2 99 0.0034 23.7 5.3 25 27-51 122-146 (298)
80 2fvy_A D-galactose-binding per 28.0 2.1E+02 0.007 22.0 8.3 20 106-125 190-211 (309)
81 3clk_A Transcription regulator 27.6 1.4E+02 0.0048 23.0 6.2 22 28-49 111-132 (290)
82 3ctp_A Periplasmic binding pro 27.6 1.1E+02 0.0037 24.4 5.7 23 28-50 158-180 (330)
83 3i3v_A Probable secreted solut 27.4 2.5E+02 0.0085 22.8 8.4 41 42-82 7-47 (405)
84 2fep_A Catabolite control prot 26.9 1.2E+02 0.004 23.6 5.6 23 28-50 119-141 (289)
85 2vk2_A YTFQ, ABC transporter p 26.7 1.5E+02 0.0051 23.1 6.2 20 106-125 177-199 (306)
86 4azs_A Methyltransferase WBDD; 26.6 3.2E+02 0.011 24.3 9.1 14 114-127 131-144 (569)
87 3tnj_A Universal stress protei 26.4 39 0.0013 23.6 2.5 26 24-50 17-42 (150)
88 3cfx_A UPF0100 protein MA_0280 26.1 1.5E+02 0.0053 23.4 6.3 48 59-126 17-64 (296)
89 3huu_A Transcription regulator 25.6 1.9E+02 0.0064 22.5 6.6 24 27-50 129-152 (305)
90 3cij_A UPF0100 protein AF_0094 25.6 1.9E+02 0.0064 22.8 6.7 21 59-79 17-37 (295)
91 3bbl_A Regulatory protein of L 25.6 1.5E+02 0.0053 22.8 6.1 20 106-125 175-196 (287)
92 3cfz_A UPF0100 protein MJ1186; 25.4 2E+02 0.0068 22.7 6.8 48 59-126 17-64 (292)
93 3s3t_A Nucleotide-binding prot 25.4 38 0.0013 23.5 2.2 26 24-50 16-41 (146)
94 1q77_A Hypothetical protein AQ 25.1 61 0.0021 22.3 3.2 25 24-49 15-39 (138)
95 3hgm_A Universal stress protei 25.0 40 0.0014 23.3 2.2 27 24-51 13-39 (147)
96 3h75_A Periplasmic sugar-bindi 24.7 1.8E+02 0.0061 23.2 6.5 19 107-125 195-213 (350)
97 3jy6_A Transcriptional regulat 24.7 94 0.0032 23.9 4.6 24 27-50 108-131 (276)
98 2peb_A Putative dioxygenase; s 24.1 1.3E+02 0.0043 22.6 5.0 28 105-133 67-94 (122)
99 1taf_B TFIID TBP associated fa 23.9 31 0.0011 23.5 1.4 25 23-47 37-61 (70)
100 2rbg_A Putative uncharacterize 23.1 2.5E+02 0.0084 21.2 8.2 72 20-114 11-85 (126)
101 2hsg_A Glucose-resistance amyl 22.7 1.6E+02 0.0055 23.3 5.8 20 106-125 228-247 (332)
102 3kjx_A Transcriptional regulat 22.7 1.4E+02 0.005 23.8 5.5 20 106-125 236-255 (344)
103 1jmv_A USPA, universal stress 22.6 52 0.0018 22.7 2.5 25 24-49 13-37 (141)
104 2p8i_A Putative dioxygenase; Y 22.4 53 0.0018 24.5 2.6 28 105-133 70-97 (117)
105 2hue_C Histone H4; mini beta s 22.2 44 0.0015 23.0 1.9 25 23-47 41-65 (84)
106 3fg9_A Protein of universal st 21.4 52 0.0018 23.2 2.3 26 24-50 28-53 (156)
107 2ly8_A Budding yeast chaperone 21.1 46 0.0016 25.0 2.0 27 23-49 78-104 (121)
108 1tzy_D Histone H4-VI; histone- 21.1 46 0.0016 23.8 1.9 25 23-47 60-84 (103)
109 2yfw_B Histone H4, H4; cell cy 20.9 47 0.0016 23.8 1.9 25 23-47 60-84 (103)
No 1
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=100.00 E-value=4.4e-50 Score=354.03 Aligned_cols=137 Identities=28% Similarity=0.360 Sum_probs=132.0
Q ss_pred eeecceecccceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEEE
Q psy3672 3 LYLLDRLRQLSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMIT 82 (178)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v 82 (178)
+|++.+.+..+++.+++++|++++|||+|+||++|++|+||+||+|||+||||.|||+|+++|+|++++||+|+++++++
T Consensus 123 ~Y~g~~~~~~~~a~~~~~~T~~~~eRiar~AF~~A~~r~rkkvt~v~KaNvlk~t~glf~~~~~eva~eyp~I~~~~~~v 202 (333)
T 1x0l_A 123 LYVEQERRYLDVAIADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLDTVKEVAKDFPLVNVQDIIV 202 (333)
T ss_dssp TCCCCEEEETTEEEEEEEEEHHHHHHHHHHHHHHHHTSTTCEEEEEECTTTCTTHHHHHHHHHHHHHTTCTTSEEEEEEH
T ss_pred eeccccccCCCeEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEecCccchhhhHHHHHHHHHHHHHCCCceEEEEEH
Confidence 68988765568999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred eeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCCceecC
Q psy3672 83 GFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTGSCQQS 162 (178)
Q Consensus 83 ~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~~~fep 162 (178)
|+|+||||++|++||||||+|||||||||++|+++||+||+||+| +|+.+++|||
T Consensus 203 ----------------------D~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~psan---ig~~~a~fEp 257 (333)
T 1x0l_A 203 ----------------------DNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVGGLGLAPSGN---IGDTTAVFEP 257 (333)
T ss_dssp ----------------------HHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTCEEEE---ECSSCEEEEE
T ss_pred ----------------------HHHHHHHhhCcccceEEEEcCccchhHhHHHHhhcCCcccceeeE---ECCCceEEeC
Confidence 999999999999999999999999999999999999999999999 7888999999
Q ss_pred cc
Q psy3672 163 CD 164 (178)
Q Consensus 163 ~~ 164 (178)
+|
T Consensus 258 ~H 259 (333)
T 1x0l_A 258 VH 259 (333)
T ss_dssp SS
T ss_pred CC
Confidence 98
No 2
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=100.00 E-value=3e-49 Score=352.13 Aligned_cols=137 Identities=20% Similarity=0.158 Sum_probs=129.9
Q ss_pred eeecceecc-----cceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEE
Q psy3672 3 LYLLDRLRQ-----LSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTN 77 (178)
Q Consensus 3 ~~~~~~~~~-----~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~ 77 (178)
+|++.+.+. .+++.+++++|++++|||+|+||++|++|+||+||+|||+||||.|+|+|+++|+|++++||+|++
T Consensus 140 ~Y~g~~~~~~~~~~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~~kkVt~v~KaNvlk~s~glf~~~~~eva~eypdv~~ 219 (364)
T 3flk_A 140 EYSSLGGIMFENTENEIVIQESIFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAMAAHYPHVSW 219 (364)
T ss_dssp TCCCCEEEESTTSTTCEEEEEEEEEHHHHHHHHHHHHHHHHHSSSCEEEEEECTTTSTTHHHHHHHHHHHHHTTCTTCEE
T ss_pred eecCcCceeccCCCCCEEEEEEEECHHHHHHHHHHHHHHHHhcCCCeEEEEECcchhhhHHHHHHHHHHHHHHHCCCceE
Confidence 588876653 579999999999999999999999999998889999999999999999999999999999999999
Q ss_pred EEEEEeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCC
Q psy3672 78 RKMITGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTG 157 (178)
Q Consensus 78 ~~~~v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~ 157 (178)
+++++ |+|+||||++|++||||||+|||||||||++|+++||+||+||+| +|+.+
T Consensus 220 ~~~~v----------------------D~~am~lv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSan---ig~~~ 274 (364)
T 3flk_A 220 DKQHI----------------------DILCARFVLQPERFDVVVASNLFGDILSDLGPACAGTIGIAPSAN---LNPER 274 (364)
T ss_dssp EEEEH----------------------HHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTCEEEE---ECTTC
T ss_pred EeeEH----------------------HHHHHHHHhCcccCcEEEecccchHHHHHHHHHhcCCcccccccc---cCCCC
Confidence 99999 999999999999999999999999999999999999999999999 67665
Q ss_pred ---ceecCcc
Q psy3672 158 ---SCQQSCD 164 (178)
Q Consensus 158 ---~~fep~~ 164 (178)
++|||+|
T Consensus 275 ~~~a~fEp~H 284 (364)
T 3flk_A 275 NFPSLFEPVH 284 (364)
T ss_dssp SSCEEEEESS
T ss_pred CcceEEecCC
Confidence 9999998
No 3
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=100.00 E-value=3.5e-49 Score=348.67 Aligned_cols=136 Identities=22% Similarity=0.275 Sum_probs=128.9
Q ss_pred eeecceec-----ccceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEE
Q psy3672 3 LYLLDRLR-----QLSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTN 77 (178)
Q Consensus 3 ~~~~~~~~-----~~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~ 77 (178)
+|++.+.+ ..+++.+++++|++++|||+|+||+||++| |++||+|||+||||.|||+|+++|+|++++||+|++
T Consensus 128 ~Y~g~e~~~~~g~~~~~a~~~~~~T~~~~eRiar~AFe~A~~r-rkkVt~v~KaNvlk~s~glf~~~~~eva~eyp~i~~ 206 (337)
T 1w0d_A 128 PYTGNGGAIRVGTPNEVATEVSVNTAFGVRRVVADAFERARRR-RKHLTLVHKTNVLTFAGGLWLRTVDEVGECYPDVEV 206 (337)
T ss_dssp GGGCCEEEESTTSTTCEEEEEEEEEHHHHHHHHHHHHHHHHHT-TSEEEEEECTTTSHHHHHHHHHHHHHHHTTCTTSEE
T ss_pred eecCCcceecCCCCCCeEEEEEEEcHHHHHHHHHHHHHHHHHc-CCeEEEEECCccchhhhHHHHHHHHHHHHHCCceEE
Confidence 68888655 346999999999999999999999999998 889999999999999999999999999999999999
Q ss_pred EEEEEeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCC--
Q psy3672 78 RKMITGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISR-- 155 (178)
Q Consensus 78 ~~~~v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~-- 155 (178)
+++++ |+|+||||++|++||||||+|||||||||++|+++||+||+||+| +|+
T Consensus 207 ~~~~v----------------------D~~~mqlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~psan---ig~~~ 261 (337)
T 1w0d_A 207 AYQHV----------------------DAATIHMITDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGN---IDATR 261 (337)
T ss_dssp EEEEH----------------------HHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEE---ECTTC
T ss_pred EEEEH----------------------HHHHHHHhhCcccccEEEECcchhHHHHHHHhhhcCCcccCceeE---eCCCC
Confidence 99999 999999999999999999999999999999999999999999999 566
Q ss_pred -CCceecCcc
Q psy3672 156 -TGSCQQSCD 164 (178)
Q Consensus 156 -~~~~fep~~ 164 (178)
.+++|||+|
T Consensus 262 ~~~a~fEp~H 271 (337)
T 1w0d_A 262 ANPSMFEPVH 271 (337)
T ss_dssp SSCEEEEESS
T ss_pred CCceEEecCC
Confidence 568999999
No 4
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=100.00 E-value=7.4e-49 Score=348.06 Aligned_cols=137 Identities=34% Similarity=0.415 Sum_probs=130.7
Q ss_pred eeecceecc-cceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHH-hhCCCeEEEEE
Q psy3672 3 LYLLDRLRQ-LSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMA-KLYPVWTNRKM 80 (178)
Q Consensus 3 ~~~~~~~~~-~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva-~eYpdv~~~~~ 80 (178)
+|++.+.+. .+++.+++++|++++|||+|+||++|++|+|++||+|||+||||.|||+|+++|+|++ ++||+|+++++
T Consensus 135 ~Y~g~e~~~~~gva~~~~~~T~~~~eRiar~AF~~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva~~eyp~i~~~~~ 214 (349)
T 3blx_A 135 EFSGLEHESVPGVVESLKVMTRPKTERIARFAFDFAKKYNRKSVTAVHKANIMKLGDGLFRNIITEIGQKEYPDIDVSSI 214 (349)
T ss_dssp GGGCEEEECSTTEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTTHHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred cEeCCceeccCCeEEEEEEeCHHHHHHHHHHHHHHHHhcCCCcEEEEeCCccchhhHHHHHHHHHHHHHhhCCCeeEEEe
Confidence 688887543 3589999999999999999999999999988999999999999999999999999999 89999999999
Q ss_pred EEeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCCcee
Q psy3672 81 ITGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTGSCQ 160 (178)
Q Consensus 81 ~v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~~~f 160 (178)
++ |+|+||||++|++||||||+|||||||||++|+++||+||+||+| +|+.+++|
T Consensus 215 ~v----------------------D~~~~qlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSan---ig~~~a~f 269 (349)
T 3blx_A 215 IV----------------------DNASMQAVAKPHQFDVLVTPSMYGTILGNIGAALIGGPGLVAGAN---FGRDYAVF 269 (349)
T ss_dssp EH----------------------HHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEE---EESSCEEE
T ss_pred eH----------------------HHHHHHHhhCcccccEEEECCcchHHHHHHHHhhcCCcccceEEE---ECCCceeE
Confidence 99 999999999999999999999999999999999999999999999 78888999
Q ss_pred cCcc
Q psy3672 161 QSCD 164 (178)
Q Consensus 161 ep~~ 164 (178)
||+|
T Consensus 270 EpvH 273 (349)
T 3blx_A 270 EPGS 273 (349)
T ss_dssp CCTT
T ss_pred cCCC
Confidence 9999
No 5
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=100.00 E-value=1.1e-48 Score=348.76 Aligned_cols=137 Identities=23% Similarity=0.317 Sum_probs=130.6
Q ss_pred eeecceecc-----cceeeeEEeeecccccHHHHHHHHHHHhC------------CCCcEEEEeCCCccccccHHHHHHH
Q psy3672 3 LYLLDRLRQ-----LSVCDKVSLRYEETIDPCPRFSYVQDLLS------------NRKKVTAVHKANIMKLGDGLFLNSC 65 (178)
Q Consensus 3 ~~~~~~~~~-----~~~~~~~~~~t~~~~eRiar~AFe~A~~~------------~rk~Vt~vhKaNvlk~tdglf~~i~ 65 (178)
+|++.+.+. .+++.+++++|++++|||+|+||++|++| +|++||+|||+||||.|||+|+++|
T Consensus 136 ~Y~g~e~~~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~~~~~~~~~~rkkVt~v~KaNVl~~s~glf~~~~ 215 (366)
T 3ty4_A 136 LYVKEERMVQNTPGKRVAEAIRRISEEASTKIGKMAFEIAKSRQKIRESGTYSIHKKPLVTIIHKSNVMSVTDGLFRESC 215 (366)
T ss_dssp GGGCCEEEEECCTTCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCSSCEEEEEECTTTCTTHHHHHHHHH
T ss_pred EeecCcceeccCCCCceEEEEEEecHHHHHHHHHHHHHHHHhcCccccccccccCCCCeEEEEECCcchHhHHHHHHHHH
Confidence 688887653 46999999999999999999999999998 6899999999999999999999999
Q ss_pred HHH---HhhCCCeEEEEEEEeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCccccccccccccccc
Q psy3672 66 KEM---AKLYPVWTNRKMITGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGN 142 (178)
Q Consensus 66 ~ev---a~eYpdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~Ggl 142 (178)
+|+ +++||+|+++++++ |+|+||||++|++||||||+|||||||||++|+++||+
T Consensus 216 ~ev~~~a~eypdV~~~~~~V----------------------D~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~Gsl 273 (366)
T 3ty4_A 216 RHAQSLDPSYASINVDEQIV----------------------DSMVYRLFREPECFDVVVAPNLYGDILSDGAASLIGSL 273 (366)
T ss_dssp HHHGGGCGGGTTSEEEEEEH----------------------HHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHGGGSCG
T ss_pred HHHHHhHhhCCCceEEeeeH----------------------HHHHHHHHhCcccCcEEEECccchHHHHHHHHHhcCch
Confidence 999 88999999999999 99999999999999999999999999999999999999
Q ss_pred ccccCccccccCCCCceecCcc
Q psy3672 143 IVDNLASDSVISRTGSCQQSCD 164 (178)
Q Consensus 143 Gl~psa~~~~ig~~~~~fep~~ 164 (178)
||+||+| +|+.+++|||+|
T Consensus 274 Gl~pSan---ig~~~a~fEpvH 292 (366)
T 3ty4_A 274 GLVPSAN---VGDNFVMSEPVH 292 (366)
T ss_dssp GGCCCEE---ECSSCEEECCSS
T ss_pred hhhccee---eCCCceEEecCC
Confidence 9999999 778899999998
No 6
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=100.00 E-value=1.6e-48 Score=346.39 Aligned_cols=137 Identities=27% Similarity=0.325 Sum_probs=131.6
Q ss_pred eeecceec-ccceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEE
Q psy3672 3 LYLLDRLR-QLSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMI 81 (178)
Q Consensus 3 ~~~~~~~~-~~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~ 81 (178)
+|++.+.+ ..+++.+++++|++++|||+|+||++|++|+|++||+|||+||||.|||+|+++|+|++++||+|++++++
T Consensus 141 ~Y~g~e~~~~~~~a~~~~~~T~~~~eRiar~AFe~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva~eypdI~~~~~~ 220 (354)
T 3blx_B 141 EYSGIEHIVCPGVVQSIKLITRDASERVIRYAFEYARAIGRPRVIVVHKSTIQRLADGLFVNVAKELSKEYPDLTLETEL 220 (354)
T ss_dssp EEEEEEEECSTTEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEESCTTTCHHHHHHHHHHHHHGGGCTTSEEEEEE
T ss_pred cccCCcccccCCEEEEEEEEcHHHHHHHHHHHHHHHHhcCCCeEEEEECCcchHhHHHHHHHHHHHHHHHCCCceEEEEE
Confidence 69998754 35799999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred EeeeeccccccceeEEEeecccccHHHHHHhhCCCCCc--EEEeeCCCccccccccccc-ccccccccCccccccCCCCc
Q psy3672 82 TGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFD--VMVMPNLYGNIFDVMVMPN-LYGNIVDNLASDSVISRTGS 158 (178)
Q Consensus 82 v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fD--Viv~~Nl~GDILSDlaA~l-~GglGl~psa~~~~ig~~~~ 158 (178)
+ |+|+||||++|++|| ||||+|||||||||++|++ +||+||+||+| +|+.++
T Consensus 221 v----------------------D~~~m~lv~~P~~FD~~Vivt~NlfGDIlSD~aa~l~~GslGl~pSan---ig~~~a 275 (354)
T 3blx_B 221 I----------------------DNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLNSGLSAGSLGLTPSAN---IGHKIS 275 (354)
T ss_dssp H----------------------HHHHHHHHHCGGGGTTEEEEECHHHHHHHHHHHHHHHTSSGGGCEEEE---EESSCE
T ss_pred H----------------------HHHHHHHhhChhhCCceEEEecCcccchhHHHHHhhccCCccccceeE---ECCCce
Confidence 9 999999999999999 9999999999999999999 99999999999 788889
Q ss_pred eecCcc
Q psy3672 159 CQQSCD 164 (178)
Q Consensus 159 ~fep~~ 164 (178)
+|||+|
T Consensus 276 ~fEp~H 281 (354)
T 3blx_B 276 IFEAVH 281 (354)
T ss_dssp EEEECS
T ss_pred EEecCC
Confidence 999998
No 7
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=100.00 E-value=1.4e-48 Score=347.51 Aligned_cols=135 Identities=22% Similarity=0.235 Sum_probs=129.4
Q ss_pred eeecceecccceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEEE
Q psy3672 3 LYLLDRLRQLSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMIT 82 (178)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v 82 (178)
+|++.+.+..+++.+++++|++++|||+|+||++|++| ||+||+|||+|||+ ++|+|+++|+|++++||+|+++++++
T Consensus 146 ~Y~g~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r-rkkVT~v~KaNvl~-t~glf~~~~~eva~eypdV~~~~~~V 223 (361)
T 3udu_A 146 IYFGKQDLGKESAYDTEIYTKKEIERIARIAFESARIR-KKKVHLIDKANVLA-SSILWREVVANVAKDYQDINLEYMYV 223 (361)
T ss_dssp GGTSCEEECSSEEEEEEEEEHHHHHHHHHHHHHHHHHT-TSEEEEEECTTTCH-HHHHHHHHHHHHGGGCTTSEEEEEEH
T ss_pred eecCccCCcCceEEEEEeccHHHHHHHHHHHHHHHHHc-CCcEEEEECchhhc-cchHHHHHHHHHHHHCCCCeEEeeeH
Confidence 68998777788999999999999999999999999998 78999999999997 89999999999999999999999999
Q ss_pred eeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCC-Cceec
Q psy3672 83 GFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRT-GSCQQ 161 (178)
Q Consensus 83 ~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~-~~~fe 161 (178)
|+|+||||++|++||||||+|||||||||++|+++||+||+||+| +|+. .++||
T Consensus 224 ----------------------D~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSan---ig~~~~a~fE 278 (361)
T 3udu_A 224 ----------------------DNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSAS---LNDKGFGLYE 278 (361)
T ss_dssp ----------------------HHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHCCGGGCEEEE---ECTTSCEEEE
T ss_pred ----------------------HHHHHHHHhCcccCcEEEecchhHHHHHHHHHHhcCchhhcceee---eCCCCCeeee
Confidence 999999999999999999999999999999999999999999999 7775 49999
Q ss_pred Ccc
Q psy3672 162 SCD 164 (178)
Q Consensus 162 p~~ 164 (178)
|+|
T Consensus 279 pvH 281 (361)
T 3udu_A 279 PAG 281 (361)
T ss_dssp ESS
T ss_pred cCC
Confidence 998
No 8
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=100.00 E-value=5.9e-48 Score=343.69 Aligned_cols=135 Identities=24% Similarity=0.307 Sum_probs=126.6
Q ss_pred eeeccee-c----ccceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEE
Q psy3672 3 LYLLDRL-R----QLSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTN 77 (178)
Q Consensus 3 ~~~~~~~-~----~~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~ 77 (178)
+|++.+. . ..+++.+++++|++++|||+|+||++|++| |++||+|||+|||| ++|+|+++|+|++++||+|++
T Consensus 144 ~Y~g~~~~~~~~~~~~~a~~~~~~T~~~~eRiar~AFe~A~~r-rkkVt~v~KaNvlk-~~~lf~~~~~eva~eypdI~~ 221 (363)
T 1cnz_A 144 IYFGQPKGREGSGQYEKAFDTEVYHRFEIERIARIAFESARKR-RRKVTSIDKANVLQ-SSILWREIVNDVAKTYPDVEL 221 (363)
T ss_dssp GGTCSSCEEECCGGGCEEEEEEEEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHHTTCTTSEE
T ss_pred eecCCcCccccCCCCceEEEEEEEcHHHHHHHHHHHHHHHHhc-CCeEEEEECCcccc-cchhHHHHHHHHHHHCCCceE
Confidence 5888732 2 246899999999999999999999999998 88999999999999 899999999999999999999
Q ss_pred EEEEEeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCC
Q psy3672 78 RKMITGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTG 157 (178)
Q Consensus 78 ~~~~v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~ 157 (178)
+++++ |+|+||||++|++||||||+|||||||||++|+++||+||+||+| +|+.+
T Consensus 222 ~~~~v----------------------D~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSan---ig~~~ 276 (363)
T 1cnz_A 222 AHMYI----------------------DNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSAS---LNEQG 276 (363)
T ss_dssp EEEEH----------------------HHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEE---ECTTS
T ss_pred eeeeH----------------------HHHHHHHhhCcccceEEEECCcchHHHHHHHHHhcCCCcccccce---eCCCC
Confidence 99999 999999999999999999999999999999999999999999999 67766
Q ss_pred -ceecCcc
Q psy3672 158 -SCQQSCD 164 (178)
Q Consensus 158 -~~fep~~ 164 (178)
++|||+|
T Consensus 277 ~a~fEpvH 284 (363)
T 1cnz_A 277 FGLYEPAG 284 (363)
T ss_dssp CEEEEESS
T ss_pred CeEEEcCC
Confidence 8999998
No 9
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=100.00 E-value=5.8e-48 Score=344.16 Aligned_cols=134 Identities=22% Similarity=0.219 Sum_probs=127.6
Q ss_pred eeecceec-ccceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEE
Q psy3672 3 LYLLDRLR-QLSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMI 81 (178)
Q Consensus 3 ~~~~~~~~-~~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~ 81 (178)
+|++.+.+ ..+++.+++++|++++|||+|+||++|++| ||+||+|||+|||| ++|+|+++|+|++++||+|++++++
T Consensus 152 ~Y~g~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r-rkkVt~v~KaNvlk-t~glf~~~~~eva~eypdV~~~~~~ 229 (366)
T 1vlc_A 152 VYYGQPRGLDEEKGFDTMIYDRKTVERIARTAFEIAKNR-RKKVTSVDKANVLY-SSMLWRKVVNEVAREYPDVELTHIY 229 (366)
T ss_dssp GGTEEEEEECSSCEEEECCCCHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred eecCCccccCCCeEEEEEEEcHHHHHHHHHHHHHHHHHc-CCeEEEEECCcccc-cchHHHHHHHHHHHHCCCceEEeee
Confidence 58888654 347899999999999999999999999998 89999999999999 9999999999999999999999999
Q ss_pred EeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCCceec
Q psy3672 82 TGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTGSCQQ 161 (178)
Q Consensus 82 v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~~~fe 161 (178)
+ |+|+||||++|++||||||+|||||||||++|+++||+||+||+| +| .+++||
T Consensus 230 V----------------------D~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSan---ig-~~alfE 283 (366)
T 1vlc_A 230 V----------------------DNAAMQLILKPSQFDVILTTNMFGDILSDESAALPGSLGLLPSAS---FG-DKNLYE 283 (366)
T ss_dssp H----------------------HHHHHHHHHCGGGCSEEEECHHHHHHHHHHHTTSSSCGGGCEEEE---ES-SSEEEE
T ss_pred H----------------------HHHHHHHhhCcccceEEEEcchhHHHHHHHHHHhcCccccccEee---eC-Cceeee
Confidence 9 999999999999999999999999999999999999999999999 67 679999
Q ss_pred Ccc
Q psy3672 162 SCD 164 (178)
Q Consensus 162 p~~ 164 (178)
|+|
T Consensus 284 pvH 286 (366)
T 1vlc_A 284 PAG 286 (366)
T ss_dssp ESS
T ss_pred cCC
Confidence 998
No 10
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=100.00 E-value=6.6e-48 Score=344.70 Aligned_cols=135 Identities=23% Similarity=0.247 Sum_probs=127.1
Q ss_pred eeecceec-----ccceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEE
Q psy3672 3 LYLLDRLR-----QLSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTN 77 (178)
Q Consensus 3 ~~~~~~~~-----~~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~ 77 (178)
+|++.+.+ ..+++.+++++|++++|||+|+||+||++| ||+||+|||+|||| ++|+|+++|+|++++||+|++
T Consensus 153 ~Y~g~~~~~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r-rkkVT~v~KaNvl~-~~glf~~~~~eva~eypdV~~ 230 (375)
T 3vmk_A 153 IYFGKPKGRQGEGENEEAFDTMRYSRKEIRRIAKIAFESAQGR-RKKVTSVDKANVLA-CSVLWREVVEEVAKDYPDVEL 230 (375)
T ss_dssp TTTCSSCEEECCGGGCEEEEEEEEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHHTTCTTSEE
T ss_pred EecCCccccccCCCCceEEEEEEEcHHHHHHHHHHHHHHHHHc-CCcEEEEECchhhh-hhhHHHHHHHHHHHHCCCceE
Confidence 58887554 246899999999999999999999999998 78999999999999 569999999999999999999
Q ss_pred EEEEEeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCC
Q psy3672 78 RKMITGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTG 157 (178)
Q Consensus 78 ~~~~v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~ 157 (178)
+++++ |+|+||||++|++||||||+|||||||||++|+++||+||+||+| +|+.+
T Consensus 231 ~~~~V----------------------D~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSan---ig~~~ 285 (375)
T 3vmk_A 231 EHIYI----------------------DNATMQLLRRPNEFDVMLCSNLFGDIVSDEIAMLTGSMGLLASIS---MNSQG 285 (375)
T ss_dssp EEEEH----------------------HHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEE---ECTTS
T ss_pred eeeeH----------------------HHHHHHHHhCcccCcEEEECchhHHHHHHHHHHhcCCccccceee---eCCCC
Confidence 99999 999999999999999999999999999999999999999999999 77875
Q ss_pred -ceecCcc
Q psy3672 158 -SCQQSCD 164 (178)
Q Consensus 158 -~~fep~~ 164 (178)
++|||+|
T Consensus 286 ~a~fEpvH 293 (375)
T 3vmk_A 286 FGMYEPAG 293 (375)
T ss_dssp CEEEEESS
T ss_pred ceEEecCC
Confidence 9999998
No 11
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=100.00 E-value=4.4e-48 Score=344.16 Aligned_cols=135 Identities=18% Similarity=0.226 Sum_probs=128.0
Q ss_pred eeecceec-ccceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEE
Q psy3672 3 LYLLDRLR-QLSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMI 81 (178)
Q Consensus 3 ~~~~~~~~-~~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~ 81 (178)
+|++.+.+ ..+++.+++++|++++|||+|+||++|++| |++||+|||+|||| ++|+|+++|+|++++||+|++++++
T Consensus 141 ~Y~g~e~~~~~~~a~~~~~~T~~~~eRIar~AFe~A~~r-rkkVt~v~KaNvlk-~~~lf~~~~~eva~eypdI~~~~~~ 218 (359)
T 2y3z_A 141 IYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKR-RKHVVSVDKANVLE-VGEFWRKTVEEVGRGYPDVALEHQY 218 (359)
T ss_dssp TTTCSSCEECSSCEECCCCCCHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred eEecCCCcCCCceEEEEEEEcHHHHHHHHHHHHHHHHHc-CCeEEEEECCcccc-ccHHHHHHHHHHHHHCCcEEEEeeE
Confidence 58887543 357899999999999999999999999998 88999999999999 8999999999999999999999999
Q ss_pred EeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCCceec
Q psy3672 82 TGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTGSCQQ 161 (178)
Q Consensus 82 v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~~~fe 161 (178)
+ |+|+||||++|++||||||+|||||||||++|+++||+||+||+| +|+.+++||
T Consensus 219 V----------------------D~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSan---ig~~~~~fE 273 (359)
T 2y3z_A 219 V----------------------DAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSAS---LGRGTPVFE 273 (359)
T ss_dssp H----------------------HHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHTTTSCGGGCEEEE---EESSCCEEE
T ss_pred H----------------------HHHHHHHhhCcccccEEEEcCcchHHHHHHHHHhcCcccccceeE---eCCCCceee
Confidence 9 999999999999999999999999999999999999999999999 778888999
Q ss_pred Ccc
Q psy3672 162 SCD 164 (178)
Q Consensus 162 p~~ 164 (178)
|+|
T Consensus 274 pvH 276 (359)
T 2y3z_A 274 PVH 276 (359)
T ss_dssp ESS
T ss_pred cCC
Confidence 998
No 12
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=100.00 E-value=8e-48 Score=342.26 Aligned_cols=135 Identities=20% Similarity=0.207 Sum_probs=126.4
Q ss_pred eeeccee-c----ccceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEE
Q psy3672 3 LYLLDRL-R----QLSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTN 77 (178)
Q Consensus 3 ~~~~~~~-~----~~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~ 77 (178)
+|++.+. . ..+++.+++++|++++|||+|+||++|++| |++||+|||+|||| ++|+|+++|+|++++||+|++
T Consensus 139 ~Y~g~~~~~~~~~~~~~a~~~~~~T~~~~eRiar~AFe~A~~r-rkkVt~v~KaNvlk-~~~lf~~~~~eva~eypdI~~ 216 (358)
T 1a05_A 139 IYFGQPRGLEVIDGKRRGFNTMVYDEDEIRRIAHVAFRAAQGR-RKQLCSVDKANVLE-TTRLWREVVTEVARDYPDVRL 216 (358)
T ss_dssp TTTCSSCEEEEETTEEEEEEEEEEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHGGGCTTSEE
T ss_pred cccCCcCccccCCCCceEEEEEEEcHHHHHHHHHHHHHHHHhc-CCeEEEEECCcccc-cchhHHHHHHHHHHHCCCceE
Confidence 5888732 1 236899999999999999999999999998 88999999999999 899999999999999999999
Q ss_pred EEEEEeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCC
Q psy3672 78 RKMITGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTG 157 (178)
Q Consensus 78 ~~~~v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~ 157 (178)
+++++ |+|+||||++|++||||||+|||||||||++|+++||+||+||+| +|+..
T Consensus 217 ~~~~v----------------------D~~~mqlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSan---ig~~~ 271 (358)
T 1a05_A 217 SHMYV----------------------DNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGMLPSAS---LGEGR 271 (358)
T ss_dssp EEEEH----------------------HHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEEEE---ECSSC
T ss_pred EeeeH----------------------HHHHHHHHhCCCcccEEEecCcccHhHHHHHHhhcCCccccceee---eCCCc
Confidence 99999 999999999999999999999999999999999999999999999 67667
Q ss_pred ceecCcc
Q psy3672 158 SCQQSCD 164 (178)
Q Consensus 158 ~~fep~~ 164 (178)
++|||+|
T Consensus 272 ~~fEpvH 278 (358)
T 1a05_A 272 AMYEPIH 278 (358)
T ss_dssp EEEEESS
T ss_pred eeeecCC
Confidence 9999998
No 13
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=100.00 E-value=1.3e-47 Score=352.23 Aligned_cols=137 Identities=26% Similarity=0.313 Sum_probs=131.3
Q ss_pred eeecceec-ccceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEE
Q psy3672 3 LYLLDRLR-QLSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMI 81 (178)
Q Consensus 3 ~~~~~~~~-~~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~ 81 (178)
+|+|.+.+ ..+++.+++++|++++|||+|+||++|++|+|++||+|||+||||.|||+|+++|+|++++||+|++++++
T Consensus 143 ~Y~G~e~~~~~~va~~~~v~Tr~~ieRIar~AFe~A~~r~rkkVT~V~KaNVlk~sdGlfr~v~~eVa~eYPdI~~e~~~ 222 (496)
T 2d1c_A 143 LYAGIEHMQTPSVAQTLKLISWKGSEKIVRFAFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVAQEYPDIEAVHII 222 (496)
T ss_dssp GGGCCEEEEETTEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTCTTHHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred eEeceeEecCCCeEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCchhhHHHHHHHHHHHHHHHCCCceEEEEe
Confidence 58887655 45799999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred EeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCCceec
Q psy3672 82 TGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTGSCQQ 161 (178)
Q Consensus 82 v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~~~fe 161 (178)
+ |+|+||||++|++||||||+|||||||||++|+++||+||+||+| +|+.+++||
T Consensus 223 V----------------------D~~amqLV~~P~~FDVIVt~NLfGDILSDlaA~l~GslGlapSan---ig~~~a~FE 277 (496)
T 2d1c_A 223 V----------------------DNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLGFAPSAN---IGNEVAIFE 277 (496)
T ss_dssp H----------------------HHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHTTTTCGGGCEEEE---ECSSCEEEE
T ss_pred H----------------------HHHHHHHhhCcCcceEEEECCcchHHHHHHHHHhcCCcccCcEEE---ECCCCceee
Confidence 9 999999999999999999999999999999999999999999999 788899999
Q ss_pred Ccc
Q psy3672 162 SCD 164 (178)
Q Consensus 162 p~~ 164 (178)
|+|
T Consensus 278 pvH 280 (496)
T 2d1c_A 278 AVH 280 (496)
T ss_dssp ESS
T ss_pred CCC
Confidence 998
No 14
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=100.00 E-value=2.4e-47 Score=344.20 Aligned_cols=143 Identities=21% Similarity=0.187 Sum_probs=122.4
Q ss_pred cceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHh-hCCCeEEEEEEEeeeecccc
Q psy3672 12 LSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAK-LYPVWTNRKMITGFIWTTRD 90 (178)
Q Consensus 12 ~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~-eYpdv~~~~~~v~~~~~~~~ 90 (178)
.+++.+++++|+++++||+|+||+||++|+|++||+|||+||||.|||+|+++++|+++ +||+..++ ++.|.+ +
T Consensus 185 ~~~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~----~~~~~~-~ 259 (409)
T 2e0c_A 185 DDTGIGIKVMSKYKTQRITRLAIQYAIEHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEYRDFIVT----EEEINQ-G 259 (409)
T ss_dssp SSEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTTTHHHHHHHHHHHHHHHSTTTEEE----HHHHTT-T
T ss_pred CceEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchhhhhhHHHHHHHHHHHHhCCCcccc----cccccc-c
Confidence 36899999999999999999999999999888999999999999999999999999998 99992221 111222 0
Q ss_pred ccc--eeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCCceecCcc
Q psy3672 91 INV--FIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTGSCQQSCD 164 (178)
Q Consensus 91 ~~~--~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~~~fep~~ 164 (178)
.+. +|.+++.++ |+|+||||++|++||||||+|||||||||++|+++||+||+||+| +|+.+++|||+|
T Consensus 260 ~~~~~~I~~~~~~v--D~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSan---ig~~~a~fEp~H 330 (409)
T 2e0c_A 260 KPDQGKIILNDRIA--DNMFQQIIIRPEEYDIILAPNVNGDYISDAAGALIGNIGMLGGAN---IGDEGGMFEAIH 330 (409)
T ss_dssp CCCTTSEEEEEEEH--HHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEEEE---EETTEEEEEESS
T ss_pred cccCCeEEEEEEEH--HHHHHHHhhCcccccEEEECCcchHHHHHHHHHhcCCcccCceEE---ECCCceEEecCC
Confidence 001 234444433 999999999999999999999999999999999999999999999 778889999998
No 15
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=100.00 E-value=1.8e-47 Score=343.17 Aligned_cols=135 Identities=27% Similarity=0.296 Sum_probs=123.6
Q ss_pred eeecceecc----cceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEE
Q psy3672 3 LYLLDRLRQ----LSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNR 78 (178)
Q Consensus 3 ~~~~~~~~~----~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~ 78 (178)
+|++.+.+. .+++.+++++|++++|||+|+||++|++| ||+||+|||+||| .|||+|+++|+|++++||+|+++
T Consensus 161 ~Y~g~~~~~~~~g~~~a~~~~~~Tr~~~eRIar~AFe~A~~r-rkkVT~v~KaNVl-~t~glfr~~~~eva~eYPdV~~~ 238 (390)
T 3u1h_A 161 LYFGEPSERYEEGEEAAVDTLLYTREEIERIIRKAFELALTR-KKKVTSVDKANVL-ESSRLWREVAEEVAKEYPDVELE 238 (390)
T ss_dssp SCC-------CTTCSEEEEEEEEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTC-HHHHHHHHHHHHHHTTCTTSEEE
T ss_pred eecCccccccCCCCceEEEEEEecHHHHhHHHHHHHHHHHHc-CCceEEEECCccc-ccchHHHHHHHHHHhHCCCCeEE
Confidence 688876654 35899999999999999999999999998 8999999999999 69999999999999999999999
Q ss_pred EEEEeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCC-C
Q psy3672 79 KMITGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRT-G 157 (178)
Q Consensus 79 ~~~v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~-~ 157 (178)
++++ |+|+||||++|++||||||+|||||||||++|+++||+||+||+| +|+. .
T Consensus 239 ~~~V----------------------D~~amqLV~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~pSan---ig~~~~ 293 (390)
T 3u1h_A 239 HMLV----------------------DNAAMQLIRNPRQFDVIVTENMFGDILSDEASMITGSLGMLPSAS---LSTDGL 293 (390)
T ss_dssp EEEH----------------------HHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHSCTTTCEEEE---EETTSC
T ss_pred eeeH----------------------HHHHHHHHhCcccCcEEEecccchHHHHHHHHHhcCchhhcceee---ecCCCC
Confidence 9999 999999999999999999999999999999999999999999999 7774 6
Q ss_pred ceecCcc
Q psy3672 158 SCQQSCD 164 (178)
Q Consensus 158 ~~fep~~ 164 (178)
++|||+|
T Consensus 294 a~fEpvH 300 (390)
T 3u1h_A 294 GLYEPVH 300 (390)
T ss_dssp EEEEESS
T ss_pred eeEecCC
Confidence 9999998
No 16
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=100.00 E-value=2.6e-47 Score=344.18 Aligned_cols=145 Identities=23% Similarity=0.235 Sum_probs=124.2
Q ss_pred cceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHh-hCCCeEEEEEEEeeeecccc
Q psy3672 12 LSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAK-LYPVWTNRKMITGFIWTTRD 90 (178)
Q Consensus 12 ~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~-eYpdv~~~~~~v~~~~~~~~ 90 (178)
.+++.+++++|+++++||+|+||+||++|+|++||+|||+||||.|||+|+++++|+++ +||+..+++ ..+|.++.
T Consensus 185 ~~~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~t~Glf~~~~~eva~~eypd~~~~~---~~~~~~~~ 261 (412)
T 2iv0_A 185 EDSGIGIKPISEFATKRLVRMAIRYAIENNRKSVTLVHKGNIMKYTEGAFRDWGYEVAKQEFGEYCITE---DELWDKYG 261 (412)
T ss_dssp TTEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTCTTTHHHHHHHHHHHHHHHSTTTEECH---HHHHHHHT
T ss_pred CceEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchhhhhHHHHHHHHHHHHHhCCCccccc---cchhhhcc
Confidence 36899999999999999999999999999888999999999999999999999999998 999933321 11232221
Q ss_pred ccc---eeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCCceecCcc
Q psy3672 91 INV---FIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTGSCQQSCD 164 (178)
Q Consensus 91 ~~~---~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~~~fep~~ 164 (178)
+.. +|.+++.++ |+|+||||++|++||||||+|||||||||++|+++||+||+||+| +|+.+++|||+|
T Consensus 262 ~~~~~~~I~~~~~~v--D~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGlapsan---ig~~~a~fEp~H 333 (412)
T 2iv0_A 262 GKQPEGKIVVKDRIA--DNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLGIAPGSN---IGDGIGVFEPVH 333 (412)
T ss_dssp TCCCTTCEEEEEEEG--GGHHHHHHHSGGGCCEEEECHHHHHHHHHHHHHHTTCGGGCEEEE---EETTEEEEEESS
T ss_pred ccccCCeEEEEEEEH--HHHHHHHhhCcccccEEEECCcchHHHHHHHHHhcCCccccceEE---ECCCceEEeCCC
Confidence 111 244444444 999999999999999999999999999999999999999999999 778889999999
No 17
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans}
Probab=100.00 E-value=4.8e-47 Score=343.94 Aligned_cols=147 Identities=19% Similarity=0.138 Sum_probs=122.8
Q ss_pred cceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHh-hCCCeEEEEEEEeeeecccc
Q psy3672 12 LSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAK-LYPVWTNRKMITGFIWTTRD 90 (178)
Q Consensus 12 ~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~-eYpdv~~~~~~v~~~~~~~~ 90 (178)
.+++.+++++|+++++||+|+||+||++|+|++||+|||+||||.|||+|+++|+|+++ +||++..+....+ ..++.+
T Consensus 192 ~~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVlk~tdGlf~~~~~eva~~eypd~~~~~~~~~-~~~~~~ 270 (429)
T 2d4v_A 192 DSSAIGIKPVSTEGSERLIRRTIQYALEHGKPSVSLVHKGNIMKFTEGGFRDWGYALAEREFAGRVFTWRQKA-AISKAE 270 (429)
T ss_dssp GGEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHSTTTEEEHHHHH-HHHHHH
T ss_pred CceEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhhHHHHHHHHHHHHHhCCCccccccccc-cccccc
Confidence 36899999999999999999999999999888999999999999999999999999998 9999432200000 000000
Q ss_pred -------------ccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCC
Q psy3672 91 -------------INVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTG 157 (178)
Q Consensus 91 -------------~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~ 157 (178)
.+.+|.+++.++ |+|+||||++|++||||||+|||||||||++|+++||+||+||+| +|+.+
T Consensus 271 ~~~~~~~~~~~~~~~~~I~~~~~~v--D~~~mqlv~~P~~fDVivt~NlfGDILSD~aA~l~GslGl~pSan---ig~~~ 345 (429)
T 2d4v_A 271 GKAAGQKAEQQAIADGKLIIKDVIA--DNFLQQILLRPEDYSVVATLNLNGDYVSDALAAEVGGIGMAPGAN---LSDTH 345 (429)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEEH--HHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCGGGCCCEE---ECSSC
T ss_pred cccccchhccccccCCeeEEEEeeH--HHHHHHHhhCcccCcEEEECCcccHHHHHHHHHhcCCHhhcCeeE---ECCCc
Confidence 000245555554 999999999999999999999999999999999999999999999 77888
Q ss_pred ceecCcc
Q psy3672 158 SCQQSCD 164 (178)
Q Consensus 158 ~~fep~~ 164 (178)
++|||+|
T Consensus 346 a~fEpvH 352 (429)
T 2d4v_A 346 AIFEATH 352 (429)
T ss_dssp EEEECSC
T ss_pred eEEecCC
Confidence 9999998
No 18
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ...
Probab=100.00 E-value=1.8e-47 Score=346.49 Aligned_cols=144 Identities=21% Similarity=0.202 Sum_probs=125.7
Q ss_pred cceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHh-hCCCeEEEEEEEeeeecc--
Q psy3672 12 LSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAK-LYPVWTNRKMITGFIWTT-- 88 (178)
Q Consensus 12 ~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~-eYpdv~~~~~~v~~~~~~-- 88 (178)
.+++.+++++|++++|||+|+||+||++|+|++||+|||+||||.|||+|+++|+|+++ +||+++++. ..|.+
T Consensus 202 ~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~rkkVT~V~KaNVlk~tdglfr~~~~eva~~eypdv~~~~----~~~~~~~ 277 (427)
T 3dms_A 202 QTSGIGIKPVSKEGTERLVRKAIQYAIDNDRKSVTLVHKGNIMKFTEGAFRDAGYALAQKEFGAELIDG----GPWMKFK 277 (427)
T ss_dssp GGCCEECCCCCHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHHCCEESTT----SSCEEEE
T ss_pred CcceEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhhHHHHHHHHHHHHHhCCcccccc----ccccccc
Confidence 35789999999999999999999999999889999999999999999999999999997 799865521 11211
Q ss_pred -ccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCCceecCcc
Q psy3672 89 -RDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTGSCQQSCD 164 (178)
Q Consensus 89 -~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~~~fep~~ 164 (178)
.-.+.+|.+++.++ |+|+||||++|++||||||+|||||||||++|+++||+||+||+| +|+.+++|||+|
T Consensus 278 ~~~~~~~V~~~~~~V--D~~amqlv~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~pSan---ig~~~a~fEpvH 349 (427)
T 3dms_A 278 NPKTGNEIVVKDSIA--DAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIAPGAN---LSDSVAMFEATH 349 (427)
T ss_dssp CTTTCCEEEEEEEEH--HHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCTTTCEEEE---ECSSCEEEEECS
T ss_pred cccccCceEEEEeeH--HHHHHHHhhCcccceEEEEcccccHHHHHHHHHhcCCccccceee---eCCCcceEEecc
Confidence 01122566666666 999999999999999999999999999999999999999999999 788899999998
No 19
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A*
Probab=100.00 E-value=3e-47 Score=345.81 Aligned_cols=144 Identities=19% Similarity=0.121 Sum_probs=125.1
Q ss_pred cceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHh-hCCCeEEEEEEEeeee-ccc
Q psy3672 12 LSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAK-LYPVWTNRKMITGFIW-TTR 89 (178)
Q Consensus 12 ~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~-eYpdv~~~~~~v~~~~-~~~ 89 (178)
.+++.+++++|+++++||+|+||+||++|+|++||+|||+||||.|||+|+++++|+++ +||++.+++ ..| +.+
T Consensus 195 ~~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVlk~tdGlf~~~~~eva~~eypd~~~~e----~~~~~~~ 270 (435)
T 1tyo_A 195 EDAGIGVKPISRFATRRLMERALEWALRNGNTVVTIMHKGNIMKYTEGAFMRWAYEVALEKFREHVVTE----QEVQEKY 270 (435)
T ss_dssp TTEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEEECTTTSTTTHHHHHHHHHHHHHHHSGGGEEEH----HHHHHHS
T ss_pred CCeEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhhHHHHHHHHHHHHHhCCCccccc----ccccccc
Confidence 46899999999999999999999999998889999999999999999999999999998 999954421 111 111
Q ss_pred cccc---eeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCCceecCcc
Q psy3672 90 DINV---FIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTGSCQQSCD 164 (178)
Q Consensus 90 ~~~~---~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~~~fep~~ 164 (178)
.+.. +|++++.++ |+|+||||++|++||||||+|||||||||++|+++||+||+||+| +|+.+++|||+|
T Consensus 271 ~~~~~~~~I~~~~~~v--D~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGlapSan---ig~~~a~fEpvH 343 (435)
T 1tyo_A 271 GGVRPEGKILVNDRIA--DNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVGGIGMAAGMN---MGDGIAVAEPVH 343 (435)
T ss_dssp TTCCCTTCEEEEEEEH--HHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEE---ECSSCEEEEESS
T ss_pred cccccCCeEEEEeeeH--HHHHHHHhhCCCCceEEEEcccchHHHHHHHHhhcCCcccCceee---ECCCceeeecCC
Confidence 1111 355555555 999999999999999999999999999999999999999999999 788899999998
No 20
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=100.00 E-value=3.5e-47 Score=342.77 Aligned_cols=135 Identities=22% Similarity=0.228 Sum_probs=125.9
Q ss_pred eeecceec------ccceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeE
Q psy3672 3 LYLLDRLR------QLSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWT 76 (178)
Q Consensus 3 ~~~~~~~~------~~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~ 76 (178)
+|++.+.+ ..+++.+++++|++++|||+|+||+||++| |++||+|||+||||.+ |+|+++|+|++++||+|+
T Consensus 180 ~Y~G~e~~~~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r-rkkVT~v~KaNVlk~s-glf~~~~~eva~eYPdV~ 257 (405)
T 3r8w_A 180 IYFGEPRGIKTNENGEEVGFNTEVYAAHEIDRIARVAFETARKR-RGKLCSVDKANVLEAS-ILWRKRVTALASEYPDVE 257 (405)
T ss_dssp TTTCSSCEEEECSSSCEEEEEEEEEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCHHH-HHHHHHHHHHGGGSTTSE
T ss_pred eecCCccccccCCCCceEEEEEEEecHHHHHHHHHHHHHHHHHc-CCeEEEEECchhhccc-cHHHHHHHHHHhHCCCCe
Confidence 58887653 236899999999999999999999999976 7899999999999966 999999999999999999
Q ss_pred EEEEEEeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCC
Q psy3672 77 NRKMITGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRT 156 (178)
Q Consensus 77 ~~~~~v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~ 156 (178)
++++++ |+++||||++|++||||||+|||||||||++|+++||+||+||+| +|+.
T Consensus 258 ~~~~~V----------------------D~~amqLV~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~pSan---ig~~ 312 (405)
T 3r8w_A 258 LSHMYV----------------------DNAAMQLVRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSAS---LSDS 312 (405)
T ss_dssp EEEEEH----------------------HHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHSCGGGCEEEE---ECSS
T ss_pred EEeeeH----------------------HHHHHHHHhChhhCcEEeecchhhHHHHHHHHHhcCcccccceee---ecCC
Confidence 999999 999999999999999999999999999999999999999999999 6765
Q ss_pred -CceecCcc
Q psy3672 157 -GSCQQSCD 164 (178)
Q Consensus 157 -~~~fep~~ 164 (178)
.++|||+|
T Consensus 313 ~~a~fEpvH 321 (405)
T 3r8w_A 313 GPGLFEPIH 321 (405)
T ss_dssp SCCEEEESS
T ss_pred CCeEEecCC
Confidence 59999998
No 21
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1
Probab=100.00 E-value=4.5e-47 Score=343.58 Aligned_cols=148 Identities=23% Similarity=0.162 Sum_probs=123.3
Q ss_pred cceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHh-hCCCeEEEEEEEe-------
Q psy3672 12 LSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAK-LYPVWTNRKMITG------- 83 (178)
Q Consensus 12 ~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~-eYpdv~~~~~~v~------- 83 (178)
.+++.+++++|+++++||+|+||+||++|+|++||+|||+||||.|||+|++|++|+++ +||+++++.....
T Consensus 183 ~~~a~~~~~~T~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~t~Glf~~~~~eva~~eypd~~~~~~~~~~~~~~~~ 262 (423)
T 1hqs_A 183 ETSGIGIKPVSEEGTSRLVRAAIDYAIEHGRKSVTLVHKGNIMKFTEGAFKNWGYELAEKEYGDKVFTWAQYDRIAEEQG 262 (423)
T ss_dssp GGEEEEEEEEEHHHHHHHHHHHHHHHHHHTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHHGGGEEEHHHHHHHHHHHH
T ss_pred CceEEEEEEEcHHHHHHHHHHHHHHHHHcCCCcEEEEECCccchhhhHHHHHHHHHHHHHhCCCcccchhhhcccccccc
Confidence 46899999999999999999999999998889999999999999999999999999998 9999443200000
Q ss_pred --eeecccc---ccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccC--CC
Q psy3672 84 --FIWTTRD---INVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVIS--RT 156 (178)
Q Consensus 84 --~~~~~~~---~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig--~~ 156 (178)
+-.+.+. .+.+|++++.++ |+|+||||++|++||||||+|||||||||++|+++||+||+||+| +| +.
T Consensus 263 ~~~~~~~~~~~~~~~~I~~~~~~v--D~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGl~pSan---igp~~~ 337 (423)
T 1hqs_A 263 KDAANKAQSEAEAAGKIIIKDSIA--DIFLQQILTRPNEFDVVATMNLNGDYISDALAAQVGGIGIAPGAN---INYETG 337 (423)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEH--HHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCTTTCEEEE---ECTTTC
T ss_pred ccccccccccccccCeEEEEEeeH--HHHHHHHhhCCCCccEEEECCcchHHHHHHHHhhcCCcccCccce---ecCCCC
Confidence 0000000 001355555555 999999999999999999999999999999999999999999999 77 67
Q ss_pred CceecCcc
Q psy3672 157 GSCQQSCD 164 (178)
Q Consensus 157 ~~~fep~~ 164 (178)
+++|||+|
T Consensus 338 ~alfEp~H 345 (423)
T 1hqs_A 338 HAIFEATH 345 (423)
T ss_dssp CEEEEESC
T ss_pred ceEEecCC
Confidence 89999999
No 22
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=100.00 E-value=8e-47 Score=333.61 Aligned_cols=134 Identities=26% Similarity=0.290 Sum_probs=127.9
Q ss_pred eeecceec-ccceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEE
Q psy3672 3 LYLLDRLR-QLSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMI 81 (178)
Q Consensus 3 ~~~~~~~~-~~~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~ 81 (178)
+|++.+.+ ..+++.+++++|++++|||+|+||++|++| |++||+|||+||||.|||+|+++|+|++++ +|++++++
T Consensus 122 ~Y~g~~~~~~~~va~~~~~~T~~~~eRiar~AF~~A~~r-rkkvt~v~KaNvlk~t~glf~~~~~eva~~--~I~~~~~~ 198 (336)
T 1wpw_A 122 LYKGFEHIVSDGVAVGMKIITRFASERIAKVGLNFALRR-RKKVTCVHKANVMRITDGLFAEACRSVLKG--KVEYSEMY 198 (336)
T ss_dssp TTTCCEEEEETTEEEEEEEEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCTTHHHHHHHHHHHHHTT--TSEEEEEE
T ss_pred eEcCCccccCCCeEEEEEEecHHHHHHHHHHHHHHHHHh-CCeEEEEECCcchhhhhHHHHHHHHHHHHh--CceeEEEe
Confidence 58887654 457999999999999999999999999998 899999999999999999999999999998 99999999
Q ss_pred EeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCCceec
Q psy3672 82 TGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTGSCQQ 161 (178)
Q Consensus 82 v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~~~fe 161 (178)
+ |+|+||||++|++||||||+|||||||||++|+++||+||+||+| +|+.+++||
T Consensus 199 v----------------------D~~~~~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSan---ig~~~a~fE 253 (336)
T 1wpw_A 199 V----------------------DAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGSLGIAPSAN---IGDKKALFE 253 (336)
T ss_dssp H----------------------HHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEE---ECSSCEEEE
T ss_pred H----------------------HHHHHHHhhCcccceEEEEcCcchHHHHHHHHHhcCCccccceEE---ECCCCceEe
Confidence 9 999999999999999999999999999999999999999999999 788889999
Q ss_pred Ccc
Q psy3672 162 SCD 164 (178)
Q Consensus 162 p~~ 164 (178)
|+|
T Consensus 254 p~H 256 (336)
T 1wpw_A 254 PVH 256 (336)
T ss_dssp ESS
T ss_pred CCC
Confidence 999
No 23
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=100.00 E-value=1.1e-44 Score=325.94 Aligned_cols=125 Identities=13% Similarity=0.032 Sum_probs=118.7
Q ss_pred ceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHH-hhCCC------eEEEEEEEeee
Q psy3672 13 SVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMA-KLYPV------WTNRKMITGFI 85 (178)
Q Consensus 13 ~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva-~eYpd------v~~~~~~v~~~ 85 (178)
+.+....++|+++++||+|+||+||++| |++||+|||+||||.|||+|+++|+|++ ++||+ |+++++++
T Consensus 173 ~~~~~~~~~T~~~~eRiar~AFe~A~~r-~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~~I~~~~~~v--- 248 (402)
T 2uxq_A 173 PAIVQGIHNTVASIGHFARACFEYSLDQ-KIDCWFATKDTISKQYDQRFKIIFEEIFAQEYKEKFAAAGIEYFYTLI--- 248 (402)
T ss_dssp CEEEEEEEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHHTCCEEEEEH---
T ss_pred CceEEEEEECHHHHHHHHHHHHHHHHHc-CCcEEEEECCCcchhhHHHHHHHHHHHHHHhCCCcccCCeEEEEEEEH---
Confidence 4566677899999999999999999998 6789999999999999999999999999 69999 99999999
Q ss_pred eccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCC-ceecCcc
Q psy3672 86 WTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTG-SCQQSCD 164 (178)
Q Consensus 86 ~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~-~~fep~~ 164 (178)
|+|+||||++|++| ||||+|||||||||++|+++||+||+||+| +|+.+ ++|||+|
T Consensus 249 -------------------D~~~mqlv~~P~~f-Vivt~NlfGDIlSD~aA~l~GslGl~pSan---ig~~~~~lfEpvH 305 (402)
T 2uxq_A 249 -------------------DDVVARMMKTEGGM-LWACKNYDGDVMSDMVASAFGSLAMMSSVL---VSPYGYFEYEAAH 305 (402)
T ss_dssp -------------------HHHHHHHTTCCCCS-EEEECHHHHHHHHHHHHHHHTCTTSEEEEE---ECTTSCEEEECCS
T ss_pred -------------------HHHHHHHccCCCce-EEEEcccchHHHHHHHHHhcCCccccccce---ecCCCCeEEeCCC
Confidence 99999999999999 999999999999999999999999999999 77777 8999998
No 24
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=100.00 E-value=4.3e-44 Score=323.10 Aligned_cols=125 Identities=14% Similarity=0.118 Sum_probs=118.8
Q ss_pred ceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHH-hhCCC------eEEEEEEEeee
Q psy3672 13 SVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMA-KLYPV------WTNRKMITGFI 85 (178)
Q Consensus 13 ~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva-~eYpd------v~~~~~~v~~~ 85 (178)
+.+.+..++|+++++||+|+||+||++| |++||+|||+||||.|||+|+++|+|++ ++||+ |+++++++
T Consensus 176 ~~~~~~~~~T~~~~eRiar~AFe~A~~r-~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~~I~~~~~~V--- 251 (413)
T 1lwd_A 176 GGVGMGMYNTDESISGFAHSCFQYAIQK-KWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHRLI--- 251 (413)
T ss_dssp CEEEEEEEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHTTCCEEEEEH---
T ss_pred CcEEEEEEEcHHHHHHHHHHHHHHHHHh-CCceEEEECCcchhhHHHHHHHHHHHHHHHhCCCcccCCeEEEEEEEH---
Confidence 4677777999999999999999999998 6789999999999999999999999999 69999 99999999
Q ss_pred eccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCC--ceecCc
Q psy3672 86 WTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTG--SCQQSC 163 (178)
Q Consensus 86 ~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~--~~fep~ 163 (178)
|+|+||||++|++| ||||+|||||||||++|+++||+||+||+| +|+.+ ++|||+
T Consensus 252 -------------------D~~~mqlv~~P~~F-Vivt~NlfGDILSD~aA~l~GslGl~pSan---ig~~~~~~~fEpv 308 (413)
T 1lwd_A 252 -------------------DDMVAQVLKSSGGF-VWACKNYDGDVQSDILAQGFGSLGLMTSVL---VCPDGKTIEAEAA 308 (413)
T ss_dssp -------------------HHHHHHHHHSCCCE-EEEECHHHHHHHHHHHHHHHTCTTSEEEEE---ECTTSSCEEEECC
T ss_pred -------------------HHHHHHHhcCCCce-EEEecccccchHHHHHHhhcCCccccccce---eCCCCCceEEeCC
Confidence 99999999999999 999999999999999999999999999999 67765 799999
Q ss_pred c
Q psy3672 164 D 164 (178)
Q Consensus 164 ~ 164 (178)
|
T Consensus 309 H 309 (413)
T 1lwd_A 309 H 309 (413)
T ss_dssp S
T ss_pred C
Confidence 9
No 25
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=100.00 E-value=5.8e-44 Score=323.48 Aligned_cols=119 Identities=15% Similarity=0.175 Sum_probs=114.2
Q ss_pred EeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHH-hhCCC------eEEEEEEEeeeeccccc
Q psy3672 19 SLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMA-KLYPV------WTNRKMITGFIWTTRDI 91 (178)
Q Consensus 19 ~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva-~eYpd------v~~~~~~v~~~~~~~~~ 91 (178)
.++|+++++||+|+||++|++| |++||+|||+||||.|||+|+++|+||+ ++||+ |+++++++
T Consensus 198 ~~~T~~~ieRIar~AFe~A~~r-~~kVt~v~KaNVlk~s~glfr~v~~eva~~eYpd~~~~~~I~~e~~~V--------- 267 (427)
T 2qfy_A 198 MYNTDESIEGFAHSSFKLAIDK-KLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEQLGIHYEHRLI--------- 267 (427)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHHTCCEEEEEH---------
T ss_pred EEEcHHHHHHHHHHHHHHHHHh-CCceEEEECCccchhhhHHHHHHHHHHHHHhCCCcccCCeEEEEEEEH---------
Confidence 5899999999999999999998 6789999999999999999999999999 79999 99999999
Q ss_pred cceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCC--ceecCcc
Q psy3672 92 NVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTG--SCQQSCD 164 (178)
Q Consensus 92 ~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~--~~fep~~ 164 (178)
|+|+||||++|++| ||||+|||||||||++|+++||+||+||+| +|+.+ ++|||+|
T Consensus 268 -------------D~~amqlV~~P~~F-Vivt~NlfGDILSD~aA~l~GslGl~pSan---ig~~~~~~~fEpvH 325 (427)
T 2qfy_A 268 -------------DDMVAQMIKSKGGF-IMALKNYDGDVQSDIVAQGFGSLGLMTSIL---VTPDGKTFESEAAH 325 (427)
T ss_dssp -------------HHHHHHHHHSCEEE-EEEECHHHHHHHHHHHHHHHTCTTSEEEEE---ECTTSCCEEEECCS
T ss_pred -------------HHHHHHHHhCCCce-EEEECccchHHHHHHHHHhcCcccccceeE---eCCCCceeEecCCC
Confidence 99999999999999 999999999999999999999999999999 67766 8999997
No 26
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=100.00 E-value=1e-43 Score=322.04 Aligned_cols=124 Identities=15% Similarity=0.129 Sum_probs=117.2
Q ss_pred ceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHh-hCC------CeEEEEEEEeee
Q psy3672 13 SVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAK-LYP------VWTNRKMITGFI 85 (178)
Q Consensus 13 ~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~-eYp------dv~~~~~~v~~~ 85 (178)
+++ +..++|+++++||+|+||+||++| +++||+|||+||||.|||+|+++|+|+++ +|| +|+++++++
T Consensus 198 ~va-~~~~~T~~~~eRiar~AFe~A~~r-~kkVt~v~KaNIlk~tdglfr~~~~eva~~eYp~~~~~~~I~~~~~~V--- 272 (427)
T 3us8_A 198 GVA-LAMYNLDESITEFARASFNYGLQR-KVPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQFKAEKLWYEHRLI--- 272 (427)
T ss_dssp EEE-EEEEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHTTCCEEEEEH---
T ss_pred cEE-EEEeeCHHHHHHHHHHHHHHHHHc-CCcEEEEECcccchhhhhHHHHHHHHHHHHhCccccCCCCeEEEEEEH---
Confidence 466 667889999999999999999998 57899999999999999999999999998 997 999999999
Q ss_pred eccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCC--ceecCc
Q psy3672 86 WTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTG--SCQQSC 163 (178)
Q Consensus 86 ~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~--~~fep~ 163 (178)
|+|+||||++|++| ||||+|||||||||++|+++||+||+||+| +|+.+ ++|||+
T Consensus 273 -------------------D~~~mqlv~~P~~F-Vivt~NlfGDIlSD~aA~l~GslGl~pSan---ig~~~~~a~fEp~ 329 (427)
T 3us8_A 273 -------------------DDMVASALKWSGGY-VWACKNYDGDVQSDIVAQGFGSLGLMTSVL---MTPDGKTVEAEAA 329 (427)
T ss_dssp -------------------HHHHHHHHHSCCCE-EEEECHHHHHHHHHHHHHHHSCTTSEEEEE---ECTTSCCEEEECC
T ss_pred -------------------HHHHHHHhhCCCCc-EEEeCCcCCcHHHHHHHHhcCChhhCceeE---ECCCCCeEEEeCC
Confidence 99999999999999 999999999999999999999999999999 67665 999999
Q ss_pred c
Q psy3672 164 D 164 (178)
Q Consensus 164 ~ 164 (178)
|
T Consensus 330 H 330 (427)
T 3us8_A 330 H 330 (427)
T ss_dssp S
T ss_pred C
Confidence 8
No 27
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima}
Probab=100.00 E-value=8.1e-44 Score=320.03 Aligned_cols=125 Identities=14% Similarity=0.066 Sum_probs=117.9
Q ss_pred ceeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHh----hCCC--eEEEEEEEeeee
Q psy3672 13 SVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAK----LYPV--WTNRKMITGFIW 86 (178)
Q Consensus 13 ~~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~----eYpd--v~~~~~~v~~~~ 86 (178)
+.+....++|+++++||+|+||+||++| |++||+|||+||||.|||+|+++|+|+++ +||+ |+++++++
T Consensus 172 ~~~~~~~~~T~~~~eRiar~AFe~A~~r-~~kVt~v~KaNvlk~sdglf~~~~~eva~~~~~~yp~~~I~~~~~~v---- 246 (399)
T 1zor_A 172 NGVVMAMHNLEKSIRSFAQSCINYAISE-KVDIWFATKDTISKVYHAYFKDIFQEEVDKRKEELEKAGVNYRYMLI---- 246 (399)
T ss_dssp CEEEEEEEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTCTTHHHHHHHHHHHHHHHTHHHHHHTTCCEEEEEH----
T ss_pred ceEEEEEEecHHHHHHHHHHHHHHHHHh-CCeEEEEECcccHHHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEH----
Confidence 4566677899999999999999999998 57899999999999999999999999997 8995 99999999
Q ss_pred ccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCCC-ceecCcc
Q psy3672 87 TTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTG-SCQQSCD 164 (178)
Q Consensus 87 ~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~~-~~fep~~ 164 (178)
|+|+||||++|++| ||||+|||||||||++|+++||+||+||+| +|+.+ ++|||+|
T Consensus 247 ------------------D~~~mqlv~~P~~f-Vivt~NlfGDIlSD~aA~l~GslGl~pSan---ig~~~~~~fEpvH 303 (399)
T 1zor_A 247 ------------------DDAAAQILRSEGGM-LWACMNYEGDIMSDMIASGFGSLGLMTSVL---VSPDGVYEFEAAH 303 (399)
T ss_dssp ------------------HHHHHHHHHSCCCS-EEEECHHHHHHHHHHHHHHHCCGGGEEEEE---ECTTCCEEEEESS
T ss_pred ------------------HHHHHHhccCCCce-EEEEccchHHHHHHHHHHhcCCccccceeE---ecCCCCeEEeCCC
Confidence 99999999999999 999999999999999999999999999999 77877 7999998
No 28
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=100.00 E-value=9.1e-43 Score=313.80 Aligned_cols=124 Identities=15% Similarity=0.051 Sum_probs=113.8
Q ss_pred eeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHh-hCC------CeEEEEEEEeeee
Q psy3672 14 VCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAK-LYP------VWTNRKMITGFIW 86 (178)
Q Consensus 14 ~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~-eYp------dv~~~~~~v~~~~ 86 (178)
.+.+...+|+++++||+|+||+||++|+ ++||+|||+||||.|||+|+++|+|+++ +|| +|+++++++
T Consensus 175 gv~~~~~~t~~~~eRiar~AF~~A~~~~-~~vt~v~KaNilk~tdglf~~~~~eva~~eyp~~~~~~~i~~~~~~v---- 249 (402)
T 4aoy_A 175 GVIMGMHNTDKSIRSFARACFNYALDMN-QDLWFSTKDTISKTYDHRFKDIFQEIYENEYKEKFEAKNLQYFYTLI---- 249 (402)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHHHHHHHT-CCEEEEECTTTSHHHHHHHHHHHHHHHHHHTHHHHHHTTCCEEEEEH----
T ss_pred eeEEEEEecHHHHHHHHHHHHHHHHHcC-CcEEEEECCccchhhhhHHHHHHHHHHHHhCcccccCCCeEEEEEEH----
Confidence 3566788899999999999999999984 7899999999999999999999999997 998 999999999
Q ss_pred ccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCCCcccccccccccccccccccCccccccCCC-CceecCcc
Q psy3672 87 TTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRT-GSCQQSCD 164 (178)
Q Consensus 87 ~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl~psa~~~~ig~~-~~~fep~~ 164 (178)
|+|+||||++|++| ||||+|||||||||++|+++||+||+||+| +|+. .++|||+|
T Consensus 250 ------------------D~~~~~lv~~P~~f-Vivt~Nl~GDIlSD~~A~l~GslGl~psan---ig~~~~~~fEp~H 306 (402)
T 4aoy_A 250 ------------------DDAVARIIRSEGGM-VWACKNYDGDVMSDMVASAFGSLAMMTSVL---VSPDGKYEFEAAH 306 (402)
T ss_dssp ------------------HHHHHHHHTSCBCS-EEECCC-CHHHHHHHHHHHHSCTTSEEEEE---ECTTCCEEEEC--
T ss_pred ------------------HHHHHHHhhCCCCc-EEEECCcchHHHHHHHHHhcCchhhccccc---cCCCCceEEeecc
Confidence 99999999999999 999999999999999999999999999999 6765 48999998
No 29
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=82.76 E-value=2.5 Score=32.71 Aligned_cols=83 Identities=5% Similarity=-0.097 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhC----CCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEEEeeccc
Q psy3672 28 PCPRFSYVQDLLS----NRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRIIT 103 (178)
Q Consensus 28 Riar~AFe~A~~~----~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~ 103 (178)
...+.+.++..++ |.+++-++.-..-.. +.....+-+++..+++|++++..... .-+....+
T Consensus 109 ~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~~~~~~~~~~~-~~~~~~~~------------ 174 (276)
T 3ksm_A 109 AAGQLAARALLATLDLSKERNIALLRLRAGNA-STDQREQGFLDVLRKHDKIRIIAAPY-AGDDRGAA------------ 174 (276)
T ss_dssp HHHHHHHHHHHHHSCTTSCEEEEECBCCTTCH-HHHHHHHHHHHHHTTCTTEEEEECCB-CCSSHHHH------------
T ss_pred HHHHHHHHHHHHhcCcCCCceEEEEEcCCCch-hHHHHHHHHHHHHHhCCCcEEEEEec-CCCcHHHH------------
Confidence 3444455555554 677887775332122 22344455666667788877652111 11111111
Q ss_pred ccHHHHHHhhCCCCCcEEEeeC
Q psy3672 104 VFNWTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 104 ~Da~~~~LV~~P~~fDViv~~N 125 (178)
-..+.++++...++|.|+|.|
T Consensus 175 -~~~~~~~l~~~~~~~ai~~~~ 195 (276)
T 3ksm_A 175 -RSEMLRLLKETPTIDGLFTPN 195 (276)
T ss_dssp -HHHHHHHHHHCSCCCEEECCS
T ss_pred -HHHHHHHHHhCCCceEEEECC
Confidence 244566666656789999986
No 30
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=69.00 E-value=14 Score=29.74 Aligned_cols=83 Identities=10% Similarity=-0.019 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHh--CCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEEEeeccccc
Q psy3672 28 PCPRFSYVQDLL--SNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRIITVF 105 (178)
Q Consensus 28 Riar~AFe~A~~--~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~~D 105 (178)
...+.|.++..+ +|.++|-++.-..-.. +.....+-+++..+++|++++..... .-|...++ -
T Consensus 120 ~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~-~~~~R~~Gf~~al~~~pgi~~~~~~~-~~~~~~~~-------------~ 184 (332)
T 2rjo_A 120 AYGEETATQLFKSMGGKGGVVALGGIFSNV-PAIERKAGLDAALKKFPGIQLLDFQV-ADWNSQKA-------------F 184 (332)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECCTTCH-HHHHHHHHHHHHHHTCTTEEEEEEEE-CTTCHHHH-------------H
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEECCCCCc-cHHHHHHHHHHHHHhCCCcEEEeecc-CCCCHHHH-------------H
Confidence 345555555555 5777787775321111 12233444555556788877654221 11111111 2
Q ss_pred HHHHHHhhC-CCCCcEEEeeC
Q psy3672 106 NWTRQIVSN-PHQFDVMVMPN 125 (178)
Q Consensus 106 a~~~~LV~~-P~~fDViv~~N 125 (178)
..+.++++. +.++|.|+|.|
T Consensus 185 ~~~~~ll~~~~~~~~aI~~~n 205 (332)
T 2rjo_A 185 PIMQAWMTRFNSKIKGVWAAN 205 (332)
T ss_dssp HHHHHHHHHHGGGEEEEEESS
T ss_pred HHHHHHHHhcCCCeeEEEECC
Confidence 345666665 55689999876
No 31
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=68.38 E-value=39 Score=26.13 Aligned_cols=97 Identities=6% Similarity=-0.013 Sum_probs=51.3
Q ss_pred eeeEEeeecccccHHHHHHHHH--HHh-CCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEEEeeeeccccc
Q psy3672 15 CDKVSLRYEETIDPCPRFSYVQ--DLL-SNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDI 91 (178)
Q Consensus 15 ~~~~~~~t~~~~eRiar~AFe~--A~~-~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~ 91 (178)
...+....+.+.+..+++..+. -.+ +..+++-++.-..-.. +.....+-+++..+++|++++..... .-+...++
T Consensus 105 ~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~-~~~~R~~gf~~~l~~~~g~~~~~~~~-~~~~~~~~ 182 (293)
T 3l6u_A 105 VSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVY-TTNERHRGFLKGIENEPTLSIVDSVS-GNYDPVTS 182 (293)
T ss_dssp SEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCH-HHHHHHHHHHHHHTTCTTEEEEEEEE-CTTCHHHH
T ss_pred eeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCc-hHHHHHHHHHHHHHhCCCcEEeeecc-CCCCHHHH
Confidence 3445555556666666666653 221 1012677765221111 22344455666667788887754322 11111111
Q ss_pred cceeEEEeecccccHHHHHHhhCCCCCcEEEeeCC
Q psy3672 92 NVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNL 126 (178)
Q Consensus 92 ~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl 126 (178)
-.++.++++...++|.|+|.|=
T Consensus 183 -------------~~~~~~~l~~~~~~~ai~~~~d 204 (293)
T 3l6u_A 183 -------------ERVMRQVIDSGIPFDAVYCHND 204 (293)
T ss_dssp -------------HHHHHHHHHTTCCCSEEEESSH
T ss_pred -------------HHHHHHHHHhCCCCCEEEECCc
Confidence 3456777777778999999863
No 32
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=65.50 E-value=27 Score=27.11 Aligned_cols=92 Identities=9% Similarity=-0.041 Sum_probs=44.9
Q ss_pred EEeeecccccHHHHHHHHHHHh--CCCCc--EEEEe-CCCccccccHHHHHHHHHHHhhCCCeEEEEEEEeeeecccccc
Q psy3672 18 VSLRYEETIDPCPRFSYVQDLL--SNRKK--VTAVH-KANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDIN 92 (178)
Q Consensus 18 ~~~~t~~~~eRiar~AFe~A~~--~~rk~--Vt~vh-KaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~ 92 (178)
+....+++.+..+++..+.... +|.++ +.++. ..+. . ......+-+++..+++|++++..... .-|...++
T Consensus 103 V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~-~-~~~~R~~gf~~~l~~~~g~~~~~~~~-~~~~~~~~- 178 (290)
T 2fn9_A 103 IYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSA-Q-PTWDRSNGFHSVVDQYPEFKMVAQQS-AEFDRDTA- 178 (290)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTC-H-HHHHHHHHHHHHHTTSTTEEEEEEEE-CTTCHHHH-
T ss_pred EeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCC-c-hHHHHHHHHHHHHHhCCCCEEEEecc-CCCCHHHH-
Confidence 4444445555555555554221 14566 55554 2221 1 12233445556566778876543211 00100000
Q ss_pred ceeEEEeecccccHHHHHHhhCCCCCcEEEeeC
Q psy3672 93 VFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 93 ~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~N 125 (178)
-..+.++++.+.++|.|+|.|
T Consensus 179 ------------~~~~~~ll~~~~~~~ai~~~~ 199 (290)
T 2fn9_A 179 ------------YKVTEQILQAHPEIKAIWCGN 199 (290)
T ss_dssp ------------HHHHHHHHHHCTTCCEEEESS
T ss_pred ------------HHHHHHHHHhCCCCcEEEECC
Confidence 234566676655689999987
No 33
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=65.27 E-value=10 Score=29.53 Aligned_cols=48 Identities=8% Similarity=-0.040 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHh--CCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeE
Q psy3672 28 PCPRFSYVQDLL--SNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWT 76 (178)
Q Consensus 28 Riar~AFe~A~~--~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~ 76 (178)
...+.|.++..+ +|.+++-++.-..-.. +.....+-+++..+++|+++
T Consensus 109 ~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~~~~~ 158 (291)
T 3l49_A 109 SIGAELALQMVADLGGKGNVLVFNGFYSVP-VCKIRYDQMKYVLEAFPDVK 158 (291)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECSCTTSH-HHHHHHHHHHHHHHTCTTEE
T ss_pred HHHHHHHHHHHHHcCCCceEEEEeCCCCCc-hHHHHHHHHHHHHHHCCCCE
Confidence 345555555555 6777888885332222 22233445566667788766
No 34
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=64.24 E-value=25 Score=27.80 Aligned_cols=85 Identities=9% Similarity=0.052 Sum_probs=41.3
Q ss_pred cHHHHHHHHHHH-hCCCCcEEEEeCCCccccccHHHHHHHHHHHhhC---CCeEEEEEEEeeeeccccccceeEEEeecc
Q psy3672 27 DPCPRFSYVQDL-LSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLY---PVWTNRKMITGFIWTTRDINVFIWTIRRII 102 (178)
Q Consensus 27 eRiar~AFe~A~-~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eY---pdv~~~~~~v~~~~~~~~~~~~i~~~~~~i 102 (178)
....+.|.++.. +.|.+++-++.-..-.. +.....+-+++..+++ |++++.......-|...++
T Consensus 107 ~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~-~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------- 174 (313)
T 3m9w_A 107 EKVGELQAKALVDIVPQGNYFLMGGSPVDN-NAKLFRAGQMKVLKPYVDSGKIKVVGDQWVDGWLPENA----------- 174 (313)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEEESCTTCH-HHHHHHHHHHHHHHHHHHTTSEEEEEEEECGGGCHHHH-----------
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEECCCCCc-cHHHHHHHHHHHHHhhccCCCEEEEeeccCCCcCHHHH-----------
Confidence 345555666666 66777887775322111 1122233344433333 6666543222111111111
Q ss_pred cccHHHHHHhhCC-CCCcEEEeeC
Q psy3672 103 TVFNWTRQIVSNP-HQFDVMVMPN 125 (178)
Q Consensus 103 ~~Da~~~~LV~~P-~~fDViv~~N 125 (178)
-..+.++++.. ..+|.|+|.|
T Consensus 175 --~~~~~~~l~~~~~~~~ai~~~~ 196 (313)
T 3m9w_A 175 --LKIMENALTANNNKIDAVVASN 196 (313)
T ss_dssp --HHHHHHHHHHTTTCCCEEEESS
T ss_pred --HHHHHHHHHhCCCCeeEEEECC
Confidence 23445566554 7899999987
No 35
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=63.65 E-value=29 Score=27.22 Aligned_cols=83 Identities=7% Similarity=-0.086 Sum_probs=43.8
Q ss_pred cHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEEEeecccccH
Q psy3672 27 DPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRIITVFN 106 (178)
Q Consensus 27 eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~~Da 106 (178)
....+.|.++-.++|.+++-++.-..-. +.....+-+++..+++.- .++...+..-+...++ -.
T Consensus 111 ~~~~~~a~~~L~~~G~~~I~~i~~~~~~--~~~~R~~Gf~~al~~~g~-~~~~~~~~~~~~~~~~-------------~~ 174 (289)
T 3k9c_A 111 VAGITLAVDHLTELGHRNIAHIDGADAP--GGADRRAGFLAAMDRHGL-SASATVVTGGTTETEG-------------AE 174 (289)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEECCTTST--THHHHHHHHHHHHHHTTC-GGGEEEECCCSSHHHH-------------HH
T ss_pred HHHHHHHHHHHHHCCCCcEEEEeCCCCc--cHHHHHHHHHHHHHHCCC-CCCccEEECCCCHHHH-------------HH
Confidence 3456666666677788888887644322 223344444444444321 2111122111111111 34
Q ss_pred HHHHHhhCCCCCcEEEeeC
Q psy3672 107 WTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 107 ~~~~LV~~P~~fDViv~~N 125 (178)
.+.++++...++|.|+|.|
T Consensus 175 ~~~~~l~~~~~~~ai~~~~ 193 (289)
T 3k9c_A 175 GMHTLLEMPTPPTAVVAFN 193 (289)
T ss_dssp HHHHHHTSSSCCSEEEESS
T ss_pred HHHHHHcCCCCCCEEEECC
Confidence 5677777777899999987
No 36
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=60.92 E-value=20 Score=28.74 Aligned_cols=83 Identities=7% Similarity=-0.104 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhC--CCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEEEeecccccH
Q psy3672 29 CPRFSYVQDLLS--NRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRIITVFN 106 (178)
Q Consensus 29 iar~AFe~A~~~--~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~~Da 106 (178)
..+.|.++..++ |.+++-++.-..-.. +.....+-+++..+++|++++..... .-|...++ -.
T Consensus 113 ~g~~a~~~L~~~~~G~~~I~~i~~~~~~~-~~~~R~~Gf~~al~~~pg~~~~~~~~-~~~~~~~~-------------~~ 177 (325)
T 2x7x_A 113 IGRSVGNYIASSLKGKGNIVELTGLSGST-PAMERHQGFMAAISKFPDIKLIDKAD-AAWERGPA-------------EI 177 (325)
T ss_dssp HHHHHHHHHHHHTTTEEEEEEEESCTTSH-HHHHHHHHHHHHHHTCTEEEEEEEEE-CTTSHHHH-------------HH
T ss_pred HHHHHHHHHHHHcCCCceEEEEECCCCCc-cHHHHHHHHHHHHHhCCCCEEEeeec-CCCCHHHH-------------HH
Confidence 445555555552 667777775321111 11223344555556778876643211 10110000 23
Q ss_pred HHHHHhhCCCCCcEEEeeCC
Q psy3672 107 WTRQIVSNPHQFDVMVMPNL 126 (178)
Q Consensus 107 ~~~~LV~~P~~fDViv~~Nl 126 (178)
.+.++++...++|.|+|.|=
T Consensus 178 ~~~~ll~~~~~~~aI~~~nd 197 (325)
T 2x7x_A 178 EMDSMLRRHPKIDAVYAHND 197 (325)
T ss_dssp HHHHHHHHCSCCCEEEESST
T ss_pred HHHHHHHhCCCCCEEEECCC
Confidence 45566665456888888774
No 37
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=60.25 E-value=50 Score=25.49 Aligned_cols=81 Identities=12% Similarity=-0.080 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEEEeecccccHH
Q psy3672 28 PCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRIITVFNW 107 (178)
Q Consensus 28 Riar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~~Da~ 107 (178)
...+.|.++..++|.+++-++.-..-...+ ....+-+++..+++. +++. ....-|...++ -..
T Consensus 104 ~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~-~~R~~gf~~~l~~~g-~~~~--~~~~~~~~~~~-------------~~~ 166 (277)
T 3cs3_A 104 GGATQAIEQFVNVGSKKVLLLSGPEKGYDS-QERLAVSTRELTRFG-IPYE--IIQGDFTEPSG-------------YAA 166 (277)
T ss_dssp HHHHHHHHHHHHTTCSCEEEEECCTTSHHH-HHHHHHHHHHHHHTT-CCEE--EEECCSSHHHH-------------HHH
T ss_pred HHHHHHHHHHHHcCCceEEEEeCCccCccH-HHHHHHHHHHHHHcC-CCee--EEeCCCChhHH-------------HHH
Confidence 345556666666677788777533211111 122333444444443 3333 12111111111 245
Q ss_pred HHHHhhC-CCCCcEEEeeC
Q psy3672 108 TRQIVSN-PHQFDVMVMPN 125 (178)
Q Consensus 108 ~~~LV~~-P~~fDViv~~N 125 (178)
+.++++. +.++|.|+|.|
T Consensus 167 ~~~~l~~~~~~~~ai~~~~ 185 (277)
T 3cs3_A 167 AKKILSQPQTEPVDVFAFN 185 (277)
T ss_dssp HHHHTTSCCCSSEEEEESS
T ss_pred HHHHHhcCCCCCcEEEEcC
Confidence 5677776 66789999876
No 38
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=59.63 E-value=19 Score=24.84 Aligned_cols=55 Identities=9% Similarity=-0.073 Sum_probs=42.6
Q ss_pred eEEeeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeE
Q psy3672 17 KVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWT 76 (178)
Q Consensus 17 ~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~ 76 (178)
|+.=.|.+.+.+.....+..|..+|.+.|.++| -| +.|..++...+.-+++|.|.
T Consensus 8 DLhG~~~~eA~~~l~~fl~~a~~~g~~~v~IIH----Gk-G~GvLr~~V~~~L~~~~~V~ 62 (83)
T 2zqe_A 8 DLRGLTVAEALLEVDQALEEARALGLSTLRLLH----GK-GTGALRQAIREALRRDKRVE 62 (83)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHTTCSEEEEEC----CS-TTSHHHHHHHHHHHHCTTEE
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE----CC-CchHHHHHHHHHHhcCCcee
Confidence 334456677888889999999998888999999 23 34788888888878888754
No 39
>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound PER monomer, acyltransferase; HET: COA; 2.15A {Methanosarcina thermophila} SCOP: c.77.1.5 PDB: 1qzt_A* 2af3_C*
Probab=59.51 E-value=10 Score=32.36 Aligned_cols=91 Identities=21% Similarity=0.120 Sum_probs=52.8
Q ss_pred cccccHHHHHHHHHHHh-CCC-CcEEEEeCCCcc--c-cccHHHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEE
Q psy3672 23 EETIDPCPRFSYVQDLL-SNR-KKVTAVHKANIM--K-LGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWT 97 (178)
Q Consensus 23 ~~~~eRiar~AFe~A~~-~~r-k~Vt~vhKaNvl--k-~tdglf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~ 97 (178)
.+...++++.+-++|+. -|- -||-+..=++-- + .....-++..+...+++|++.++-.+-
T Consensus 180 ~e~l~~ia~~~~~~~~~~~Gi~PrVAlLs~ge~g~~~~~~~~~v~~A~~ll~~~~~~~~v~Gpl~--------------- 244 (333)
T 2af4_C 180 VEDVANIAVISAKTFELLVQDVPKVAMLSYSTKGSAKSKLTEATIASTKLAQELAPDIAIDGELQ--------------- 244 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCCEEEEECSCSTTSCCSHHHHHHHHHHHHHHHHCTTSEEEEEEC---------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCeEEEEeCccCCCCCCCCcHHHHHHHHHHhccCCCcEEEecCc---------------
Confidence 44555666777788876 442 356665421111 1 111234444443334688887764443
Q ss_pred EeecccccHHHHHHhh------CC--CCCcEEEeeCCC-ccccccc
Q psy3672 98 IRRIITVFNWTRQIVS------NP--HQFDVMVMPNLY-GNIFDVM 134 (178)
Q Consensus 98 ~~~~i~~Da~~~~LV~------~P--~~fDViv~~Nl~-GDILSDl 134 (178)
.|++...-+. +| +.+||+|+||++ |+|.-=+
T Consensus 245 ------~D~a~~~~~~~~k~~~s~~~G~aDvlV~pd~d~GNI~~K~ 284 (333)
T 2af4_C 245 ------VDAAIVPKVAASKAPGSPVAGKANVFIFPDLNCGNIAYKI 284 (333)
T ss_dssp ------HHHHHCHHHHHHHSTTCSSTTSCCEEECSSHHHHHHHHHH
T ss_pred ------HHHhcCHHHHHhcCCCCccCCcCCEEEECCchHHHHHHHH
Confidence 2776655555 54 789999999998 7776543
No 40
>1td9_A Phosphate acetyltransferase; structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.75A {Bacillus subtilis} SCOP: c.77.1.5 PDB: 1xco_A
Probab=57.58 E-value=27 Score=29.64 Aligned_cols=92 Identities=15% Similarity=0.019 Sum_probs=53.5
Q ss_pred cccccHHHHHHHHHHHhCCC-CcEEEEeCCCcc--c-cccHHHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEEE
Q psy3672 23 EETIDPCPRFSYVQDLLSNR-KKVTAVHKANIM--K-LGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTI 98 (178)
Q Consensus 23 ~~~~eRiar~AFe~A~~~~r-k~Vt~vhKaNvl--k-~tdglf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~~ 98 (178)
.+...++++.+-++++.-|- -||-+..=++-- + .....-++..+...+++|++.++--+-
T Consensus 181 ~e~l~~ia~~~~~~~~~~Gi~PrVAlLs~ge~G~~~~~~~~~i~~A~~ll~~~~~~~~v~Gpl~---------------- 244 (329)
T 1td9_A 181 SQDLAEIAIESANTAKMFDIEPRVAMLSFSTKGSAKSDETEKVADAVKIAKEKAPELTLDGEFQ---------------- 244 (329)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCCEEEECSSSTTSSCSHHHHHHHHHHHHHHHHCTTSCEEEEEC----------------
T ss_pred HHHHHHHHHHHHHHHHHcCCCCeEEEEeCccCCCCCCCchHHHHHHHHHHHhhCCCCEEEeCCc----------------
Confidence 45556667777788876543 356665421111 1 111134444444445788877764443
Q ss_pred eecccccHHHHHHhh------CC--CCCcEEEeeCCC-cccccccc
Q psy3672 99 RRIITVFNWTRQIVS------NP--HQFDVMVMPNLY-GNIFDVMV 135 (178)
Q Consensus 99 ~~~i~~Da~~~~LV~------~P--~~fDViv~~Nl~-GDILSDla 135 (178)
+|++...-+. +| +++||+|+||++ |+|.-=+.
T Consensus 245 -----~D~a~~~~~~~~k~~~s~~~G~aDvlV~pd~d~GNI~~K~l 285 (329)
T 1td9_A 245 -----FDAAFVPSVAEKKAPDSEIKGDANVFVFPSLEAGNIGYKIA 285 (329)
T ss_dssp -----HHHHHCHHHHHHHCTTSSCSSCCSEEECSSHHHHHHHHHHH
T ss_pred -----HHHHcCHHHHHhhCCCCccCCCCCEEEECChhHHHHHHHHH
Confidence 2777655554 33 689999999997 77765443
No 41
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=57.58 E-value=36 Score=26.50 Aligned_cols=84 Identities=6% Similarity=-0.048 Sum_probs=41.3
Q ss_pred cHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEE-EEeeeeccccccceeEEEeeccccc
Q psy3672 27 DPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKM-ITGFIWTTRDINVFIWTIRRIITVF 105 (178)
Q Consensus 27 eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~-~v~~~~~~~~~~~~i~~~~~~i~~D 105 (178)
....+.|.++..++|.+++-++.-..-.. +.....+-+++..+++. +.+... ....-+...++ -
T Consensus 110 ~~~g~~a~~~L~~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~g-~~~~~~~~~~~~~~~~~~-------------~ 174 (291)
T 3egc_A 110 VRGARTAVEYLIARGHTRIGAIVGSAGLM-TSRERLKGFRAAMSAAG-LPVRQEWIAAGGVRADNG-------------R 174 (291)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEECSCTTSH-HHHHHHHHHHHHHHHTT-CCCCGGGEEC------CC-------------H
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCCCCc-CHHHHHHHHHHHHHHcC-CCCCHHHeEeCCCChhHH-------------H
Confidence 34566666676777888888876432222 22233344444444432 111100 01000111111 4
Q ss_pred HHHHHHhhCCCCCcEEEeeC
Q psy3672 106 NWTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 106 a~~~~LV~~P~~fDViv~~N 125 (178)
..+.++++...++|.|+|.|
T Consensus 175 ~~~~~~l~~~~~~~ai~~~~ 194 (291)
T 3egc_A 175 DGAIKVLTGADRPTALLTSS 194 (291)
T ss_dssp HHHHHHHTC-CCCSEEEESS
T ss_pred HHHHHHHhCCCCCcEEEECC
Confidence 56677887777899999877
No 42
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=56.80 E-value=49 Score=26.42 Aligned_cols=85 Identities=9% Similarity=0.085 Sum_probs=43.2
Q ss_pred cHHHHHHHHHHHh---CCCCcEEEEeCCCccccccHHHHHHHHHHHh-hCCCeEEEEEEEeeeeccccccceeEEEeecc
Q psy3672 27 DPCPRFSYVQDLL---SNRKKVTAVHKANIMKLGDGLFLNSCKEMAK-LYPVWTNRKMITGFIWTTRDINVFIWTIRRII 102 (178)
Q Consensus 27 eRiar~AFe~A~~---~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~-eYpdv~~~~~~v~~~~~~~~~~~~i~~~~~~i 102 (178)
+...+.+.++..+ +|.+++.++.=..-.. ....+.+-+.+..+ .+|++++..... .-|.....
T Consensus 110 ~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~-~~~~r~~g~~~~l~~~~~~~~~~~~~~-~~~~~~~~----------- 176 (316)
T 1tjy_A 110 KQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVT-DQNQWVKEAKAKISQEHPGWEIVTTQF-GYNDATKS----------- 176 (316)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEEEEEESCSSCH-HHHHHHHHHHHHHHHHCTTEEEEEEEE-CTTCHHHH-----------
T ss_pred HHHHHHHHHHHHHHcCCCCCEEEEEEcCCCCh-hHHHHHHHHHHHHHhhCCCcEEEEecc-CCCCHHHH-----------
Confidence 3455556666555 4666777765221111 22355555665553 588876543221 01111000
Q ss_pred cccHHHHHHhhCCCCCcEEEeeCC
Q psy3672 103 TVFNWTRQIVSNPHQFDVMVMPNL 126 (178)
Q Consensus 103 ~~Da~~~~LV~~P~~fDViv~~Nl 126 (178)
-..+.++++...+.|.|+|.|=
T Consensus 177 --~~~~~~ll~~~~~~~aI~~~nD 198 (316)
T 1tjy_A 177 --LQTAEGIIKAYPDLDAIIAPDA 198 (316)
T ss_dssp --HHHHHHHHHHCSSCCEEEECST
T ss_pred --HHHHHHHHHhCCCCCEEEECCC
Confidence 1334455554446999999883
No 43
>1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like nucleotide-binding fold, structural genomics, BSGC structure funded by NIH; 2.70A {Streptococcus pyogenes} SCOP: c.77.1.5
Probab=56.40 E-value=28 Score=29.49 Aligned_cols=94 Identities=11% Similarity=-0.017 Sum_probs=54.9
Q ss_pred ecccccHHHHHHHHHHHhCCC-CcEEEEeCCCccccccH---HHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEE
Q psy3672 22 YEETIDPCPRFSYVQDLLSNR-KKVTAVHKANIMKLGDG---LFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWT 97 (178)
Q Consensus 22 t~~~~eRiar~AFe~A~~~~r-k~Vt~vhKaNvlk~tdg---lf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~ 97 (178)
|.+...++++.+-+++++-|- -||-+..=++.-..... .-++..+...+++|++.++--+-
T Consensus 184 t~e~l~~ia~~~~~~~~~~Gi~PrVAlLs~~~~G~e~~~~~~~i~~A~~llk~~~~~~~v~Gpl~--------------- 248 (337)
T 1r5j_A 184 TAQELAEIAVNTAETAKIFDIDPKIAMLSFSTKGSGKAPQVDKVREATEIATGLNPDLALDGELQ--------------- 248 (337)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCCEEEECSCSTTSSCSHHHHHHHHHHHHHHHHCTTSCEEEEEC---------------
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCeEEEEecCccCCCCCCCcHHHHHHHHHHhccCCCcEEEecCc---------------
Confidence 445566777777888877542 35665543222221111 13555544445788877764443
Q ss_pred EeecccccHHHHHHhh------CC--CCCcEEEeeCCC-ccccccccc
Q psy3672 98 IRRIITVFNWTRQIVS------NP--HQFDVMVMPNLY-GNIFDVMVM 136 (178)
Q Consensus 98 ~~~~i~~Da~~~~LV~------~P--~~fDViv~~Nl~-GDILSDlaA 136 (178)
+|++..+-+. +| +++||+|+||++ |+|.-=+..
T Consensus 249 ------~D~a~~~~~~~~k~~~s~~~G~aDvlv~p~~d~GnI~~K~l~ 290 (337)
T 1r5j_A 249 ------FDAAFVPETAAIKAPDSAVAGQANTFVFPDLQSGNIGYKIAQ 290 (337)
T ss_dssp ------HHHHHCHHHHHHHSCSCSSTTCCCEEECSSHHHHHHHHHHHH
T ss_pred ------HHHhcCHHHHHhhCCCCccCCCCCEEEECChHHHHHHHHHHH
Confidence 3777544443 22 789999999997 777654433
No 44
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=55.70 E-value=18 Score=28.29 Aligned_cols=85 Identities=9% Similarity=-0.057 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHHh-CCCC-cEEEEeCCCccccccHHHHHHHHHHHh-hCCCeEEEEEEEeeeeccccccceeEEEeeccc
Q psy3672 27 DPCPRFSYVQDLL-SNRK-KVTAVHKANIMKLGDGLFLNSCKEMAK-LYPVWTNRKMITGFIWTTRDINVFIWTIRRIIT 103 (178)
Q Consensus 27 eRiar~AFe~A~~-~~rk-~Vt~vhKaNvlk~tdglf~~i~~eva~-eYpdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~ 103 (178)
....+.|.++..+ .|.+ ++-++.-..-...+ ....+-+++..+ .+|++++.......-|...++
T Consensus 110 ~~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~-~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~------------ 176 (303)
T 3d02_A 110 EKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQH-NLWADLLVKYQKEHYPDMHEVTRRMPVAESVDDS------------ 176 (303)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEECSCSSCHHH-HHHHHHHHHHHHHHCTTEEESSSCBSCTTCHHHH------------
T ss_pred HHHHHHHHHHHHHHhCcCceEEEEecCCCCccH-HHHHHHHHHHHHhhCCCCEEEEeecCCCCCHHHH------------
Confidence 3456666777666 6655 66666422111111 223333444433 577765421111000000000
Q ss_pred ccHHHHHHhhCCCCCcEEEeeC
Q psy3672 104 VFNWTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 104 ~Da~~~~LV~~P~~fDViv~~N 125 (178)
-..+.++++...++|.|+|.|
T Consensus 177 -~~~~~~~l~~~~~~~ai~~~~ 197 (303)
T 3d02_A 177 -RRTTLDLMKTYPDLKAVVSFG 197 (303)
T ss_dssp -HHHHHHHHHHCTTEEEEEESS
T ss_pred -HHHHHHHHHhCCCCCEEEEeC
Confidence 133455555444689999987
No 45
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=55.34 E-value=38 Score=26.48 Aligned_cols=81 Identities=10% Similarity=-0.009 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhC-C--CCcEEEEe-CCCccccccHHHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEEEeecccc
Q psy3672 29 CPRFSYVQDLLS-N--RKKVTAVH-KANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRIITV 104 (178)
Q Consensus 29 iar~AFe~A~~~-~--rk~Vt~vh-KaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~~ 104 (178)
..+.|.++-.++ | .+++-++. ..+.. +...-.+-+++..+++|+++...... .-|....+
T Consensus 117 ~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~--~~~~R~~Gf~~al~~~~g~~~~~~~~-~~~~~~~~------------- 180 (288)
T 1gud_A 117 VGAKGASFIIDKLGAEGGEVAIIEGKAGNA--SGEARRNGATEAFKKASQIKLVASQP-ADWDRIKA------------- 180 (288)
T ss_dssp HHHHHHHHHHHHHGGGCEEEEEEECSTTCH--HHHHHHHHHHHHHHTCTTEEEEEEEE-CTTCHHHH-------------
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeCCCCCc--hHhHHHHHHHHHHHhCCCcEEEEeec-CCccHHHH-------------
Confidence 344555555544 5 56776665 32221 11122233444445677765533211 11111111
Q ss_pred cHHHHHHhhCCCCCcEEEeeC
Q psy3672 105 FNWTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 105 Da~~~~LV~~P~~fDViv~~N 125 (178)
-.++.+|++.+.++|.|+|.|
T Consensus 181 ~~~~~~ll~~~~~~~ai~~~n 201 (288)
T 1gud_A 181 LDVATNVLQRNPNIKAIYCAN 201 (288)
T ss_dssp HHHHHHHHHHCTTCCEEEESS
T ss_pred HHHHHHHHHhCCCceEEEECC
Confidence 234566676656689999987
No 46
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=55.00 E-value=44 Score=26.01 Aligned_cols=81 Identities=9% Similarity=-0.023 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhC-C-CCcEEEEe-CCCccccccHHHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEEEeeccccc
Q psy3672 29 CPRFSYVQDLLS-N-RKKVTAVH-KANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRIITVF 105 (178)
Q Consensus 29 iar~AFe~A~~~-~-rk~Vt~vh-KaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~~D 105 (178)
..+.|.++-.++ | .+++-++. ..+. ..+ ..-.+-+++..+++|++++..... .-|...++ -
T Consensus 108 ~g~~a~~~L~~~~gg~~~I~~i~g~~~~-~~~-~~R~~Gf~~al~~~~~~~~~~~~~-~~~~~~~~-------------~ 171 (283)
T 2ioy_A 108 GGEMAAEFIAKALKGKGNVVELEGIPGA-SAA-RDRGKGFDEAIAKYPDIKIVAKQA-ADFDRSKG-------------L 171 (283)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEECCTTC-HHH-HHHHHHHHHHHTTCTTEEEEEEEE-CTTCHHHH-------------H
T ss_pred HHHHHHHHHHHHcCCCceEEEEECCCCC-ccH-HHHHHHHHHHHHhCCCCEEEeecc-CCCCHHHH-------------H
Confidence 445555555554 3 56776665 2222 111 122233455556788876532111 10111110 2
Q ss_pred HHHHHHhhCCCCCcEEEeeC
Q psy3672 106 NWTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 106 a~~~~LV~~P~~fDViv~~N 125 (178)
..+.++++.+.++|.|+|.|
T Consensus 172 ~~~~~ll~~~~~~~ai~~~n 191 (283)
T 2ioy_A 172 SVMENILQAQPKIDAVFAQN 191 (283)
T ss_dssp HHHHHHHHHCSCCCEEEESS
T ss_pred HHHHHHHHhCCCccEEEECC
Confidence 34556666555689999988
No 47
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=54.94 E-value=13 Score=32.42 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=12.1
Q ss_pred HHhCCCCcEEEEeCCC
Q psy3672 37 DLLSNRKKVTAVHKAN 52 (178)
Q Consensus 37 A~~~~rk~Vt~vhKaN 52 (178)
|.+.|.++|+.|++++
T Consensus 101 Aa~aGA~~V~ave~s~ 116 (376)
T 4hc4_A 101 CAQAGARRVYAVEASA 116 (376)
T ss_dssp HHHTTCSEEEEEECST
T ss_pred HHHhCCCEEEEEeChH
Confidence 4456778999999765
No 48
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=54.54 E-value=75 Score=24.79 Aligned_cols=84 Identities=10% Similarity=0.036 Sum_probs=43.4
Q ss_pred cHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCC-CeEEEEEEEee---eeccccccceeEEEeecc
Q psy3672 27 DPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYP-VWTNRKMITGF---IWTTRDINVFIWTIRRII 102 (178)
Q Consensus 27 eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYp-dv~~~~~~v~~---~~~~~~~~~~i~~~~~~i 102 (178)
....+.|.++-.++|.+++-++.-..-.. +.....+-+++..+++. .+... ..... -|...++
T Consensus 116 ~~~g~~a~~~L~~~G~~~I~~i~~~~~~~-~~~~R~~Gf~~al~~~g~~~~~~-~~~~~~~~~~~~~~~----------- 182 (301)
T 3miz_A 116 YQGARDLTRYLLERGHRRIGYIRLNPILL-GAELRLDAFRRTTSEFGLTENDL-SISLGMDGPVGAENN----------- 182 (301)
T ss_dssp HHHHHHHHHHHHTTTCCSEEEEECCTTSH-HHHHHHHHHHHHHHHHTCCGGGE-EEEECEESSTTSCEE-----------
T ss_pred HHHHHHHHHHHHHcCCCeEEEEecCccch-hHHHHHHHHHHHHHHcCCCCCcc-eEEEcCCCCcCcccc-----------
Confidence 44667777777788888888876332221 11222233333333321 11111 11111 1111111
Q ss_pred ccc--HHHHHHhhCCCCCcEEEeeC
Q psy3672 103 TVF--NWTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 103 ~~D--a~~~~LV~~P~~fDViv~~N 125 (178)
- ..+.++++....+|.|+|.|
T Consensus 183 --~~~~~~~~~l~~~~~~~ai~~~~ 205 (301)
T 3miz_A 183 --YVFAAATEMLKQDDRPTAIMSGN 205 (301)
T ss_dssp --CHHHHHHHHHTSTTCCSEEEESS
T ss_pred --HHHHHHHHHHcCCCCCcEEEECC
Confidence 3 67778888777899999987
No 49
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=54.04 E-value=23 Score=24.55 Aligned_cols=25 Identities=4% Similarity=-0.027 Sum_probs=20.3
Q ss_pred ccHHHHHHHHHHHhCCCCcEEEEeCC
Q psy3672 26 IDPCPRFSYVQDLLSNRKKVTAVHKA 51 (178)
Q Consensus 26 ~eRiar~AFe~A~~~~rk~Vt~vhKa 51 (178)
+++.+++|.++|+..+ .+|+++|=.
T Consensus 16 s~~al~~a~~la~~~~-a~l~ll~v~ 40 (143)
T 3fdx_A 16 TERIISHVESEARIDD-AEVHFLTVI 40 (143)
T ss_dssp CTTHHHHHHHHHHHHT-CEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcC-CeEEEEEEe
Confidence 7899999999998764 678888743
No 50
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=53.44 E-value=46 Score=25.33 Aligned_cols=83 Identities=11% Similarity=0.012 Sum_probs=43.5
Q ss_pred cHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEEEeecccccH
Q psy3672 27 DPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRIITVFN 106 (178)
Q Consensus 27 eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~~Da 106 (178)
....+.|.++-.++|.+++-++.-..-.. +.....+-+++..++++ ++...... .-+...++ -.
T Consensus 105 ~~~~~~a~~~L~~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~~-~~~~~~~~-~~~~~~~~-------------~~ 168 (272)
T 3o74_A 105 RDASRQLAASLLSSAPRSIALIGARPELS-VSQARAGGFDEALQGYT-GEVRRYQG-EAFSRECG-------------QR 168 (272)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEEECTTSH-HHHHHHHHHHHHTTTCC-SEEEEEEE-SSSSHHHH-------------HH
T ss_pred HHHHHHHHHHHHHCCCcEEEEEecCCCCc-cHHHHHHHHHHHHHHcC-CChheeec-CCCCHHHH-------------HH
Confidence 34566677777778888887775322222 22234445555555654 34322111 00111111 23
Q ss_pred HHHHHhhCCC-CCcEEEeeC
Q psy3672 107 WTRQIVSNPH-QFDVMVMPN 125 (178)
Q Consensus 107 ~~~~LV~~P~-~fDViv~~N 125 (178)
.+.++++.+. .+|.|+|.|
T Consensus 169 ~~~~~l~~~~~~~~ai~~~~ 188 (272)
T 3o74_A 169 LMQQLIDDLGGLPDALVTTS 188 (272)
T ss_dssp HHHHHHHHHTSCCSEEEESS
T ss_pred HHHHHHhcCCCCCcEEEEeC
Confidence 4566666544 799999976
No 51
>1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.40A {Enterococcus faecalis}
Probab=52.37 E-value=29 Score=29.09 Aligned_cols=96 Identities=13% Similarity=-0.014 Sum_probs=51.9
Q ss_pred eeEEeeeccccc---HHHHHHHHHHHhCCC--CcEEEEe---CCCccccccHHHHHHHHHH---HhhCCCeEEEEEEEee
Q psy3672 16 DKVSLRYEETID---PCPRFSYVQDLLSNR--KKVTAVH---KANIMKLGDGLFLNSCKEM---AKLYPVWTNRKMITGF 84 (178)
Q Consensus 16 ~~~~~~t~~~~e---Riar~AFe~A~~~~r--k~Vt~vh---KaNvlk~tdglf~~i~~ev---a~eYpdv~~~~~~v~~ 84 (178)
.|+-.+.....| .|+..+-++|+..|- -||-+.. |.|- ....=++.. +. .++.|+..++-.+-
T Consensus 117 ~D~g~N~~p~~e~l~~ia~~a~~~a~~lGi~~PkVAlLs~~~~g~~---~~~~~~~a~-~l~k~l~~~~~~~~dG~i~-- 190 (279)
T 1yco_A 117 TDCAMNIAPTQATLIEIVENAKEVAQKLGLHHPKIALLSAAENFNP---KMPSSVLAK-EVTAHFNDQQEATVFGPLS-- 190 (279)
T ss_dssp ECSSSCSSCCHHHHHHHHHHHHHHHHHTTCSSCEEEEECSCSSCCT---TCHHHHHHH-HHHHHHSSCSSCEEEEEEC--
T ss_pred EeCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEeccccCCC---CChHHHHHH-HHHHHHHhCCCCEEEeeCc--
Confidence 334444433344 456666888887664 3555553 4442 112333332 33 23337766653333
Q ss_pred eeccccccceeEEEeecccccHHHHHHhh------CC--CCCcEEEeeCCC-ccccccccc
Q psy3672 85 IWTTRDINVFIWTIRRIITVFNWTRQIVS------NP--HQFDVMVMPNLY-GNIFDVMVM 136 (178)
Q Consensus 85 ~~~~~~~~~~i~~~~~~i~~Da~~~~LV~------~P--~~fDViv~~Nl~-GDILSDlaA 136 (178)
.|++.-.=++ +| +.-||+||||+| |+|+-=+.-
T Consensus 191 -------------------~D~A~~~~~~~~k~~~s~~~G~adVlV~Pd~~aGNi~~K~~~ 232 (279)
T 1yco_A 191 -------------------LDLATSEEAVAHKRYSGPIMGDADILVVPTIDVGNCLYKSLT 232 (279)
T ss_dssp -------------------HHHHHCHHHHHHTTCCSSCSSCCSEEECSSHHHHHHHHHHHH
T ss_pred -------------------HHhhcCHHHHHhcCCCCccCCCCCEEEECCchHHHHHHHHHH
Confidence 1655433333 44 578999999996 888765543
No 52
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=51.20 E-value=36 Score=26.22 Aligned_cols=82 Identities=4% Similarity=-0.151 Sum_probs=41.2
Q ss_pred cHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEEEeecccccH
Q psy3672 27 DPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRIITVFN 106 (178)
Q Consensus 27 eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~~Da 106 (178)
....+.|.++..++|.+++-++.-..-. .....+-+++..+++.- .........-+....+ -.
T Consensus 103 ~~~g~~a~~~L~~~G~~~i~~i~~~~~~---~~~R~~gf~~~l~~~~~-~~~~~~~~~~~~~~~~-------------~~ 165 (280)
T 3gyb_A 103 FRGAEIATKHLIDLGHTHIAHLRVGSGA---GLRRFESFEATMRAHGL-EPLSNDYLGPAVEHAG-------------YT 165 (280)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEECCSSHH---HHHHHHHHHHHHHHTTC-CCEECCCCSCCCHHHH-------------HH
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeCCCch---HHHHHHHHHHHHHHcCc-CCCcccccCCCCHHHH-------------HH
Confidence 3456666666677788888887643322 12233334444444321 2111111110111111 34
Q ss_pred HHHHHhhCCCCCcEEEeeC
Q psy3672 107 WTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 107 ~~~~LV~~P~~fDViv~~N 125 (178)
.+.++++.....|.|+|.|
T Consensus 166 ~~~~~l~~~~~~~ai~~~~ 184 (280)
T 3gyb_A 166 ETLALLKEHPEVTAIFSSN 184 (280)
T ss_dssp HHHHHHHHCTTCCEEEESS
T ss_pred HHHHHHhCCCCCCEEEECC
Confidence 5566777667789999887
No 53
>1vmi_A Putative phosphate acetyltransferase; NP_416953.1, structura genomics, JCSG, protein structure initiative, PSI, joint CE structural genomics; 2.32A {Escherichia coli} SCOP: c.77.1.5
Probab=51.17 E-value=16 Score=31.53 Aligned_cols=91 Identities=14% Similarity=0.020 Sum_probs=52.5
Q ss_pred cccccHHHHHHHHHHHhC-CC-CcEEEEeCCC---ccccccHHHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEE
Q psy3672 23 EETIDPCPRFSYVQDLLS-NR-KKVTAVHKAN---IMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWT 97 (178)
Q Consensus 23 ~~~~eRiar~AFe~A~~~-~r-k~Vt~vhKaN---vlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~ 97 (178)
.+...++++.+-++|+.- |- -||-+..=++ .-......-++..+...+++|++.++-.+-
T Consensus 187 ~e~l~~ia~~a~~~a~~~~Gi~PrVAlLs~ge~Gs~~~~~~~~i~~A~~llk~~~~~~~v~Gpl~--------------- 251 (355)
T 1vmi_A 187 AAQLADIALASAETWRAITGEEPRVAMLSFSSNGSARHPCVANVQQATEIVRERAPKLVVDGELQ--------------- 251 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCEEEEECSCSTTSSCSHHHHHHHHHHHHHHHHCTTSEEEEEEC---------------
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCCCCCccHHHHHHHHHHHhccCCCCEEEeCCC---------------
Confidence 344556666777788764 43 3566654322 111111223444443334788887764444
Q ss_pred EeecccccHHHHHHhh------CC--CCCcEEEeeCCC-ccccccc
Q psy3672 98 IRRIITVFNWTRQIVS------NP--HQFDVMVMPNLY-GNIFDVM 134 (178)
Q Consensus 98 ~~~~i~~Da~~~~LV~------~P--~~fDViv~~Nl~-GDILSDl 134 (178)
.|++...-+. +| +.+||+|+||++ |+|.-=+
T Consensus 252 ------~D~A~~~~~~~~k~~~s~~~G~aDvlV~Pd~d~GNI~~K~ 291 (355)
T 1vmi_A 252 ------FDAAFVPEVAAQKAPASPLQGKANVMVFPSLEAGNIGYKI 291 (355)
T ss_dssp ------HHHHHCHHHHHHHCTTCTTTTCCSEEECSSHHHHHHHHHH
T ss_pred ------hHHhhCHHHHhhcCCCCccCCCCCEEEECChhHHhHHHHH
Confidence 2766655444 44 689999999998 7776543
No 54
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=50.81 E-value=63 Score=25.49 Aligned_cols=82 Identities=6% Similarity=-0.141 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhC--CCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEEEeecccccH
Q psy3672 29 CPRFSYVQDLLS--NRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRIITVFN 106 (178)
Q Consensus 29 iar~AFe~A~~~--~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~~Da 106 (178)
..+.|.++..+. |.++|-++.-..-.. +.....+-+++..++ +++++..... .-|...++ -.
T Consensus 108 ~g~~a~~~L~~~~~G~~~I~~i~~~~~~~-~~~~R~~gf~~~l~~-~g~~~~~~~~-~~~~~~~~-------------~~ 171 (313)
T 2h3h_A 108 AGYTAGLIMKELLGGKGKVVIGTGSLTAM-NSLQRIQGFKDAIKD-SEIEIVDILN-DEEDGARA-------------VS 171 (313)
T ss_dssp HHHHHHHHHHHHHTSCSEEEEEESCSSCH-HHHHHHHHHHHHHTT-SSCEEEEEEE-CSSCHHHH-------------HH
T ss_pred HHHHHHHHHHHHcCCCCEEEEEECCCCCc-cHHHHHHHHHHHhcC-CCCEEEEeec-CCCCHHHH-------------HH
Confidence 445555555554 667787776331111 112333445555555 6666543221 00110000 23
Q ss_pred HHHHHhhCCCCCcEEEeeCC
Q psy3672 107 WTRQIVSNPHQFDVMVMPNL 126 (178)
Q Consensus 107 ~~~~LV~~P~~fDViv~~Nl 126 (178)
.+.++++...++|.|+|.|=
T Consensus 172 ~~~~~l~~~~~~~ai~~~~d 191 (313)
T 2h3h_A 172 LAEAALNAHPDLDAFFGVYA 191 (313)
T ss_dssp HHHHHHHHCTTCCEEEECST
T ss_pred HHHHHHHHCcCceEEEEcCC
Confidence 45566665556899999873
No 55
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=50.67 E-value=76 Score=24.17 Aligned_cols=24 Identities=8% Similarity=-0.137 Sum_probs=16.3
Q ss_pred cHHHHHHHHHHHhCCCCcEEEEeC
Q psy3672 27 DPCPRFSYVQDLLSNRKKVTAVHK 50 (178)
Q Consensus 27 eRiar~AFe~A~~~~rk~Vt~vhK 50 (178)
.+..+.|.++-.++|.+++-++.-
T Consensus 105 ~~~~~~a~~~L~~~G~~~i~~i~~ 128 (275)
T 3d8u_A 105 FEVGKACTRHLIEQGFKNVGFIGA 128 (275)
T ss_dssp HHHHHHHHHHHHTTTCCCEEEEEC
T ss_pred HHHHHHHHHHHHHCCCCeEEEEcC
Confidence 345666777777777788877753
No 56
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=48.73 E-value=50 Score=25.47 Aligned_cols=83 Identities=10% Similarity=-0.002 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEE-EEeeeeccccccceeEEEeecccccH
Q psy3672 28 PCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKM-ITGFIWTTRDINVFIWTIRRIITVFN 106 (178)
Q Consensus 28 Riar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~-~v~~~~~~~~~~~~i~~~~~~i~~Da 106 (178)
...+.|.++..++|.+++-++.-..-...+ ....+-+++..+++. +.+... ....-+...++ -.
T Consensus 117 ~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~-~~R~~gf~~~l~~~g-~~~~~~~~~~~~~~~~~~-------------~~ 181 (292)
T 3k4h_A 117 TAAREVAEYLISLGHKQIAFIGGGSDLLVT-RDRLAGMSDALKLAD-IVLPKEYILHFDFSRESG-------------QQ 181 (292)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEESCTTBHHH-HHHHHHHHHHHHHTT-CCCCGGGEEECCSSHHHH-------------HH
T ss_pred HHHHHHHHHHHHCCCceEEEEeCcccchhH-HHHHHHHHHHHHHcC-CCCChheEEecCCCHHHH-------------HH
Confidence 456666667677787888887643222211 122333444444332 111110 01000000000 23
Q ss_pred HHHHHhhCCCCCcEEEeeC
Q psy3672 107 WTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 107 ~~~~LV~~P~~fDViv~~N 125 (178)
.+.++++.+.++|.|+|.|
T Consensus 182 ~~~~~l~~~~~~~ai~~~~ 200 (292)
T 3k4h_A 182 AVEELMGLQQPPTAIMATD 200 (292)
T ss_dssp HHHHHHTSSSCCSEEEESS
T ss_pred HHHHHHcCCCCCcEEEEcC
Confidence 5667777777899999886
No 57
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=44.21 E-value=1.1e+02 Score=23.57 Aligned_cols=21 Identities=5% Similarity=-0.083 Sum_probs=15.3
Q ss_pred HHHHHHhhCCCCCcEEEeeCC
Q psy3672 106 NWTRQIVSNPHQFDVMVMPNL 126 (178)
Q Consensus 106 a~~~~LV~~P~~fDViv~~Nl 126 (178)
..+.++++...++|.|+|.|-
T Consensus 189 ~~~~~~l~~~~~~~ai~~~~d 209 (304)
T 3gbv_A 189 RMLDDFFREHPDVKHGITFNS 209 (304)
T ss_dssp HHHHHHHHHCTTCCEEEESSS
T ss_pred HHHHHHHHhCCCeEEEEEcCc
Confidence 455666666567899999984
No 58
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=43.87 E-value=71 Score=24.83 Aligned_cols=83 Identities=7% Similarity=-0.084 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhC--CCCcEEEEeCCCccccccHHHHHHHHHHHh-hCCCeEEEEEEEeeeeccccccceeEEEeecccc
Q psy3672 28 PCPRFSYVQDLLS--NRKKVTAVHKANIMKLGDGLFLNSCKEMAK-LYPVWTNRKMITGFIWTTRDINVFIWTIRRIITV 104 (178)
Q Consensus 28 Riar~AFe~A~~~--~rk~Vt~vhKaNvlk~tdglf~~i~~eva~-eYpdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~~ 104 (178)
...+.|.++..++ |.+++-++.-... . +.....+-+++..+ .+++++...... .-+....+
T Consensus 111 ~~g~~~~~~l~~~~~g~~~i~~i~~~~~-~-~~~~R~~gf~~~l~~~~~~~~~~~~~~-~~~~~~~~------------- 174 (305)
T 3g1w_A 111 NAGMNAAYKMAELLDGEGEVAVITLPNQ-L-NHQERTTGFKETLEAEFPAIEVIAVED-GRGDSLHS------------- 174 (305)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECTTC-H-HHHHHHHHHHHHHHHHCTTEEEEEEEE-CTTCHHHH-------------
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCCCc-c-cHHHHHHHHHHHHHhhCCCCEEEEEec-CCCCHHHH-------------
Confidence 3455555555555 6778888764322 1 22333344444443 567765543222 00100000
Q ss_pred cHHHHHHhhCCCCCcEEEeeCC
Q psy3672 105 FNWTRQIVSNPHQFDVMVMPNL 126 (178)
Q Consensus 105 Da~~~~LV~~P~~fDViv~~Nl 126 (178)
-..+.++++...++|.|+|.|=
T Consensus 175 ~~~~~~~l~~~~~~~ai~~~~d 196 (305)
T 3g1w_A 175 RRVAHQLLEDYPNLAGIFATEA 196 (305)
T ss_dssp HHHHHHHHHHCTTEEEEEESSH
T ss_pred HHHHHHHHHhCCCceEEEECCC
Confidence 2345566665556899998773
No 59
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=43.50 E-value=1e+02 Score=24.02 Aligned_cols=97 Identities=6% Similarity=-0.188 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhCC--CCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEEEeeccccc
Q psy3672 28 PCPRFSYVQDLLSN--RKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRIITVF 105 (178)
Q Consensus 28 Riar~AFe~A~~~~--rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~~D 105 (178)
...+.|.++..++| .+++.++.-..-.. +.....+-+++..+++ ++++..... -+.... +-
T Consensus 114 ~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~-~~~~R~~Gf~~~l~~~-g~~~~~~~~--~~~~~~-------------~~ 176 (297)
T 3rot_A 114 LAGKKLGEKALELTPSAKRALVLNPQPGHI-GLEKRAYGIKTILQDK-GIFFEELDV--GTDPNQ-------------VQ 176 (297)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEESCTTCH-HHHHHHHHHHHHHHHT-TCEEEEEEC--CSCHHH-------------HH
T ss_pred HHHHHHHHHHHHhcCCCceEEEEeCCCCcH-HHHHHHHHHHHHHHhc-CCeEEEeec--CCChHH-------------HH
Confidence 34555666666666 67777775322222 2223444555555555 555543221 011011 13
Q ss_pred HHHHHHhhCCCCCcEEEeeCCCccccccccccccccccc
Q psy3672 106 NWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIV 144 (178)
Q Consensus 106 a~~~~LV~~P~~fDViv~~Nl~GDILSDlaA~l~GglGl 144 (178)
..+.++++...+.|.|+|.| |.++--+...+-..|+
T Consensus 177 ~~~~~~l~~~~~~~ai~~~~---d~~A~g~~~al~~~g~ 212 (297)
T 3rot_A 177 SRVKSYFKIHPETNIIFCLT---SQALDPLGQMLLHPDR 212 (297)
T ss_dssp HHHHHHHHHCTTCCEEEESS---HHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHhCCCCCEEEEcC---CcchHHHHHHHHhcCC
Confidence 44556565555789999987 4443333333334444
No 60
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=43.06 E-value=68 Score=25.08 Aligned_cols=20 Identities=0% Similarity=-0.096 Sum_probs=16.0
Q ss_pred HHHHHHhhCCCCCcEEEeeC
Q psy3672 106 NWTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 106 a~~~~LV~~P~~fDViv~~N 125 (178)
..+.++++.+.++|.|+|.|
T Consensus 176 ~~~~~~l~~~~~~~ai~~~n 195 (294)
T 3qk7_A 176 LAASRLLALEVPPTAIITDC 195 (294)
T ss_dssp HHHHHHHHSSSCCSEEEESS
T ss_pred HHHHHHHcCCCCCcEEEECC
Confidence 45677888777899999987
No 61
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=42.61 E-value=57 Score=26.14 Aligned_cols=84 Identities=10% Similarity=0.015 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEE-EEeeeeccccccceeEEEeeccccc
Q psy3672 27 DPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKM-ITGFIWTTRDINVFIWTIRRIITVF 105 (178)
Q Consensus 27 eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~-~v~~~~~~~~~~~~i~~~~~~i~~D 105 (178)
..-.+.|.++-.++|.+++-++.-..-.. +.....+-+++..+++. ++++.. ....-|...++ -
T Consensus 166 ~~~~~~a~~~L~~~G~~~I~~i~~~~~~~-~~~~R~~Gf~~al~~~g-~~~~~~~~~~~~~~~~~~-------------~ 230 (338)
T 3dbi_A 166 KQTSFNAVAELINAGHQEIAFLTGSMDSP-TSIERLAGYKDALAQHG-IALNEKLIANGKWTPASG-------------A 230 (338)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEECCCTTCH-HHHHHHHHHHHHHHHTT-CCCCGGGEECCCSSHHHH-------------H
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCCCCc-cHHHHHHHHHHHHHHCC-CCCCcceEEeCCCCHHHH-------------H
Confidence 34566677777777888888885432111 11223333444444432 111110 11011111111 2
Q ss_pred HHHHHHhhCCCCCcEEEeeC
Q psy3672 106 NWTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 106 a~~~~LV~~P~~fDViv~~N 125 (178)
..+.++++...++|.|+|.|
T Consensus 231 ~~~~~ll~~~~~~~ai~~~n 250 (338)
T 3dbi_A 231 EGVEMLLERGAKFSALVASN 250 (338)
T ss_dssp HHHHHHHHTTCCCSEEEESS
T ss_pred HHHHHHHcCCCCCeEEEECC
Confidence 45677787777899999987
No 62
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=40.53 E-value=65 Score=24.83 Aligned_cols=20 Identities=0% Similarity=0.074 Sum_probs=15.5
Q ss_pred HHHHHHhhCCCCCcEEEeeC
Q psy3672 106 NWTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 106 a~~~~LV~~P~~fDViv~~N 125 (178)
..+.++++....+|.|+|.|
T Consensus 177 ~~~~~~l~~~~~~~ai~~~~ 196 (289)
T 3g85_A 177 DAAKKLMKLKNTPKALFCNS 196 (289)
T ss_dssp HHHHHHTTSSSCCSEEEESS
T ss_pred HHHHHHHcCCCCCcEEEEcC
Confidence 45677777777889999876
No 63
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=40.36 E-value=75 Score=24.94 Aligned_cols=24 Identities=0% Similarity=-0.031 Sum_probs=16.2
Q ss_pred cHHHHHHHHHHHhCCCCcEEEEeC
Q psy3672 27 DPCPRFSYVQDLLSNRKKVTAVHK 50 (178)
Q Consensus 27 eRiar~AFe~A~~~~rk~Vt~vhK 50 (178)
....+.|.++-.++|.+++-++.-
T Consensus 116 ~~~g~~a~~~L~~~G~~~I~~i~~ 139 (303)
T 3kke_A 116 QKGGGIATEHLITLGHSRIAFISG 139 (303)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEES
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeC
Confidence 345566666666778888887753
No 64
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=40.05 E-value=1.3e+02 Score=24.05 Aligned_cols=80 Identities=8% Similarity=-0.009 Sum_probs=44.0
Q ss_pred cHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEEEe-eeeccccccceeEEEeeccccc
Q psy3672 27 DPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITG-FIWTTRDINVFIWTIRRIITVF 105 (178)
Q Consensus 27 eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~-~~~~~~~~~~~i~~~~~~i~~D 105 (178)
....+.|.++-.++|.+++-++.-..-.. +.....+-+++..+++.- . ..+. .-+...++ -
T Consensus 159 ~~~~~~a~~~L~~~G~~~I~~i~~~~~~~-~~~~R~~Gf~~al~~~g~-~---~~~~~~~~~~~~~-------------~ 220 (333)
T 3jvd_A 159 EAGFFQLTESVLGGSGMNIAALVGEESLS-TTQERMRGISHAASIYGA-E---VTFHFGHYSVESG-------------E 220 (333)
T ss_dssp HHHHHHHHHHHCCSSSCEEEEEESCTTSH-HHHHHHHHHHHHHHHTTC-E---EEEEECCSSHHHH-------------H
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeCCCCCc-cHHHHHHHHHHHHHHCCC-C---EEEecCCCCHHHH-------------H
Confidence 34667777777788888888886442222 223344445555555532 2 1121 11111111 3
Q ss_pred HHHHHHhhCCCCCcEEEeeC
Q psy3672 106 NWTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 106 a~~~~LV~~P~~fDViv~~N 125 (178)
.++.+++..+. +|.|+|.|
T Consensus 221 ~~~~~ll~~~~-~~ai~~~n 239 (333)
T 3jvd_A 221 EMAQVVFNNGL-PDALIVAS 239 (333)
T ss_dssp HHHHHHHHTCC-CSEEEECC
T ss_pred HHHHHHhcCCC-CcEEEECC
Confidence 45566777666 99999987
No 65
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=39.67 E-value=59 Score=25.28 Aligned_cols=85 Identities=7% Similarity=0.003 Sum_probs=42.7
Q ss_pred cHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEEEeecccccH
Q psy3672 27 DPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRIITVFN 106 (178)
Q Consensus 27 eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~~Da 106 (178)
....+.|.++-.++|.+++-++.-..-.. +.....+-+++..+++. +.+....+ .. ++. . ... +-.
T Consensus 112 ~~~g~~a~~~L~~~G~~~I~~i~~~~~~~-~~~~R~~gf~~~l~~~g-~~~~~~~~---~~-~~~--~----~~~--~~~ 177 (288)
T 3gv0_A 112 EAYAYEAVERLAQCGRKRIAVIVPPSRFS-FHDHARKGFNRGIRDFG-LTEFPIDA---VT-IET--P----LEK--IRD 177 (288)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCCTTSH-HHHHHHHHHHHHHHHTT-CEECCCCS---CC-TTS--C----HHH--HHH
T ss_pred HHHHHHHHHHHHHCCCCeEEEEcCCcccc-hHHHHHHHHHHHHHHcC-CCcchhhe---ec-ccc--c----hHH--HHH
Confidence 34666677777777888888875332221 11222334444444442 22221111 00 000 0 000 024
Q ss_pred HHHHHhhCCCCCcEEEeeC
Q psy3672 107 WTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 107 ~~~~LV~~P~~fDViv~~N 125 (178)
.+.++++.+..+|.|+|.|
T Consensus 178 ~~~~~l~~~~~~~ai~~~~ 196 (288)
T 3gv0_A 178 FGQRLMQSSDRPDGIVSIS 196 (288)
T ss_dssp HHHHHTTSSSCCSEEEESC
T ss_pred HHHHHHhCCCCCcEEEEcC
Confidence 6677887777899999987
No 66
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=39.12 E-value=62 Score=25.80 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=21.0
Q ss_pred ccccHHHHHHHHHHHhCCCCcEEEEeC
Q psy3672 24 ETIDPCPRFSYVQDLLSNRKKVTAVHK 50 (178)
Q Consensus 24 ~~~eRiar~AFe~A~~~~rk~Vt~vhK 50 (178)
+.+++.+++|.++|...+ .+|+++|=
T Consensus 182 ~~s~~al~~a~~la~~~~-a~l~ll~v 207 (309)
T 3cis_A 182 SASELATAIAFDEASRRN-VDLVALHA 207 (309)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCEEEEEE
T ss_pred hHHHHHHHHHHHHHHhcC-CEEEEEEE
Confidence 457889999999998864 67888873
No 67
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=38.32 E-value=1.4e+02 Score=23.10 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeC
Q psy3672 28 PCPRFSYVQDLLSNRKKVTAVHK 50 (178)
Q Consensus 28 Riar~AFe~A~~~~rk~Vt~vhK 50 (178)
...+.|.++..++|.+++-++.-
T Consensus 110 ~~g~~a~~~L~~~G~~~I~~i~~ 132 (285)
T 3c3k_A 110 AASEYVVDQLVKSGKKRIALINH 132 (285)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEEC
T ss_pred HHHHHHHHHHHHcCCCeEEEEeC
Confidence 44566666666667788877754
No 68
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=37.93 E-value=67 Score=24.18 Aligned_cols=63 Identities=11% Similarity=-0.064 Sum_probs=44.5
Q ss_pred eeeeEEeeecccccHHHHHHHHHHHhCCCCcEEEEe-CCCccccccHHHHHHHHHHHhhCCCeE
Q psy3672 14 VCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVH-KANIMKLGDGLFLNSCKEMAKLYPVWT 76 (178)
Q Consensus 14 ~~~~~~~~t~~~~eRiar~AFe~A~~~~rk~Vt~vh-KaNvlk~tdglf~~i~~eva~eYpdv~ 76 (178)
.-.++-=.|.+.+.+.+...+..|..+|.+.|.++| |++--+...+..++...+.-++.|.|.
T Consensus 48 ~~LDLHG~~~~EA~~~L~~fL~~a~~~g~r~V~IIHGKG~gs~~~~~vLk~~V~~wL~~~~~V~ 111 (137)
T 3qd7_X 48 ASLNLLRQPVEECRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQ 111 (137)
T ss_dssp GEEECTTCCHHHHHHHHHHHHHHHHHTTCSEEEEECCCCSSTTSHHHHHHHHHHHHHHTSTTEE
T ss_pred eEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCchHHHHHHHHHHHhcCCcee
Confidence 344555567788888889999999998888899998 443222222367777777777788754
No 69
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=37.48 E-value=1.4e+02 Score=23.04 Aligned_cols=82 Identities=5% Similarity=-0.135 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEEEeecccccHH
Q psy3672 28 PCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRIITVFNW 107 (178)
Q Consensus 28 Riar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~~Da~ 107 (178)
...+.|.++-.++|.+++-++.-..-.. +.....+-+++..++++- +.. .....-|...++ -..
T Consensus 124 ~~~~~a~~~L~~~G~~~I~~i~~~~~~~-~~~~R~~Gf~~~l~~~g~-~~~-~~~~~~~~~~~~-------------~~~ 187 (293)
T 2iks_A 124 DDAEMLAEELRKFPAETVLYLGALPELS-VSFLREQGFRTAWKDDPR-EVH-FLYANSYEREAA-------------AQL 187 (293)
T ss_dssp HHHHHHHHHHHTSCCSSEEEEEECTTSH-HHHHHHHHHHHHHTTCCC-CEE-EEEESSSCHHHH-------------HHH
T ss_pred HHHHHHHHHHHHCCCCEEEEEecCcccc-cHHHHHHHHHHHHHHcCC-Ccc-EEEcCCCChhhH-------------HHH
Confidence 4556677777777877877765221111 112233444554555542 211 111111111110 235
Q ss_pred HHHHhhCCCCCcEEEeeC
Q psy3672 108 TRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 108 ~~~LV~~P~~fDViv~~N 125 (178)
+.++++.+..+|.|+|.|
T Consensus 188 ~~~~l~~~~~~~ai~~~~ 205 (293)
T 2iks_A 188 FEKWLETHPMPQALFTTS 205 (293)
T ss_dssp HHHHTTTSCCCSEEEESS
T ss_pred HHHHHhcCCCCCEEEECC
Confidence 567777766789888876
No 70
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=37.15 E-value=97 Score=23.56 Aligned_cols=24 Identities=4% Similarity=-0.269 Sum_probs=17.2
Q ss_pred cHHHHHHHHHHHhCCCCcEEEEeC
Q psy3672 27 DPCPRFSYVQDLLSNRKKVTAVHK 50 (178)
Q Consensus 27 eRiar~AFe~A~~~~rk~Vt~vhK 50 (178)
....+.|.++..++|.+++-++.-
T Consensus 99 ~~~~~~a~~~L~~~G~~~i~~i~~ 122 (276)
T 2h0a_A 99 RLGGRLAGAYLARFPGPIFAIAVE 122 (276)
T ss_dssp HHHHHHHHHHHTTSSSCEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCeEEEEec
Confidence 456667777777778888877763
No 71
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=34.28 E-value=61 Score=24.96 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=14.9
Q ss_pred HHHHHHhhCCCCCcEEEeeC
Q psy3672 106 NWTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 106 a~~~~LV~~P~~fDViv~~N 125 (178)
..+.++++.+.++|.|+|.|
T Consensus 176 ~~~~~~l~~~~~~~ai~~~~ 195 (289)
T 1dbq_A 176 RAMQQILSQPHRPTAVFCGG 195 (289)
T ss_dssp HHHHHHHTSSSCCSEEEESC
T ss_pred HHHHHHHhCCCCCCEEEECC
Confidence 45567777767789999876
No 72
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=33.57 E-value=99 Score=23.70 Aligned_cols=82 Identities=10% Similarity=-0.167 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhC-C-CCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEEEeeccccc
Q psy3672 28 PCPRFSYVQDLLS-N-RKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRIITVF 105 (178)
Q Consensus 28 Riar~AFe~A~~~-~-rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~~D 105 (178)
...+.|.++..++ | .++|-++.-..-.. ......+-+++..++++.. +..... .-|...++ -
T Consensus 115 ~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~g~~-~~~~~~-~~~~~~~~-------------~ 178 (289)
T 3brs_A 115 QAGIRIGAVTKNLVRKSGKIGVISFVKNSK-TAMDREEGLKIGLSDDSNK-IEAIYY-CDSNYDKA-------------Y 178 (289)
T ss_dssp HHHHHHHHHHHHHTSSSCEEEEEESCTTSH-HHHHHHHHHHHHHGGGGGG-EEEEEE-CTTCHHHH-------------H
T ss_pred HHHHHHHHHHHHHcCCCceEEEEECCCCCc-cHHHHHHHHHHHHHhCCCc-EEeeec-CCCCHHHH-------------H
Confidence 4556666666664 5 67777775321111 1123334455555566643 222111 00100000 1
Q ss_pred HHHHHHhhCCCCCcEEEeeC
Q psy3672 106 NWTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 106 a~~~~LV~~P~~fDViv~~N 125 (178)
..+.++++....+|.|+|.|
T Consensus 179 ~~~~~~l~~~~~~~ai~~~~ 198 (289)
T 3brs_A 179 DGTVELLTKYPDISVMVGLN 198 (289)
T ss_dssp HHHHHHHHHCTTEEEEEESS
T ss_pred HHHHHHHHhCCCceEEEECC
Confidence 34556666555689999876
No 73
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=33.38 E-value=43 Score=24.22 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=20.8
Q ss_pred ccccHHHHHHHHHHHhCCCCcEEEEeC
Q psy3672 24 ETIDPCPRFSYVQDLLSNRKKVTAVHK 50 (178)
Q Consensus 24 ~~~eRiar~AFe~A~~~~rk~Vt~vhK 50 (178)
+.+++.+++|.++|+..+ .+|+++|=
T Consensus 36 ~~s~~al~~A~~la~~~~-a~l~llhV 61 (155)
T 3dlo_A 36 DRAERVLRFAAEEARLRG-VPVYVVHS 61 (155)
T ss_dssp HHHHHHHHHHHHHHHHHT-CCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcC-CEEEEEEE
Confidence 458899999999999864 57888763
No 74
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=33.10 E-value=1.5e+02 Score=23.90 Aligned_cols=20 Identities=10% Similarity=0.042 Sum_probs=15.2
Q ss_pred HHHHHHhhCCCCCcEEEeeC
Q psy3672 106 NWTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 106 a~~~~LV~~P~~fDViv~~N 125 (178)
.++.++++.+.++|.|+|.|
T Consensus 239 ~~~~~ll~~~~~~~ai~~~n 258 (355)
T 3e3m_A 239 AAAELILQEYPDTDCIFCVS 258 (355)
T ss_dssp HHHHHHHHHCTTCCEEEESS
T ss_pred HHHHHHHcCCCCCcEEEECC
Confidence 45667777767889999987
No 75
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=32.23 E-value=1e+02 Score=23.61 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=13.3
Q ss_pred HHHHHHhhCCCCCcEEEeeC
Q psy3672 106 NWTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 106 a~~~~LV~~P~~fDViv~~N 125 (178)
..+.++++.+.++|.|+|.|
T Consensus 189 ~~~~~~l~~~~~~~ai~~~~ 208 (296)
T 3brq_A 189 EGVEMLLERGAKFSALVASN 208 (296)
T ss_dssp HHHHHHHTC--CCSEEEESS
T ss_pred HHHHHHHhCCCCCCEEEECC
Confidence 34567777666789999876
No 76
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
Probab=32.21 E-value=1e+02 Score=25.27 Aligned_cols=44 Identities=11% Similarity=0.062 Sum_probs=30.2
Q ss_pred HHhCCCCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEEE
Q psy3672 37 DLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMIT 82 (178)
Q Consensus 37 A~~~~rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v 82 (178)
|......+||+-+-.+ ......+.++.++..++||+|+++...+
T Consensus 22 a~~~~~~~l~~w~~~~--~~~~~~~~~~~~~f~~~~pgi~V~~~~~ 65 (412)
T 3k01_A 22 AMVELSGTVTFWDTSN--EAEKATYQALAEGFEKEHPKVDVKYVNV 65 (412)
T ss_dssp CCCCCCEEEEEEECCC--TTTHHHHHHHHHTHHHHCTTEEEEEEEC
T ss_pred cccccCcEEEEecCCC--CcchHHHHHHHHHHHHHCcCeEEEEEec
Confidence 3333344788887665 2234678888888888999999875544
No 77
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=31.28 E-value=1.1e+02 Score=23.80 Aligned_cols=23 Identities=4% Similarity=0.059 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeC
Q psy3672 28 PCPRFSYVQDLLSNRKKVTAVHK 50 (178)
Q Consensus 28 Riar~AFe~A~~~~rk~Vt~vhK 50 (178)
...+.|.++-.++|.+++-++.-
T Consensus 114 ~~g~~a~~~L~~~G~~~I~~i~~ 136 (290)
T 2rgy_A 114 RGGELAAATLIEHGHRKLAVISG 136 (290)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEES
T ss_pred HHHHHHHHHHHHCCCceEEEEeC
Confidence 45666677767778788877753
No 78
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=30.01 E-value=1.4e+02 Score=23.82 Aligned_cols=20 Identities=10% Similarity=0.164 Sum_probs=14.7
Q ss_pred HHHHHHhhCCCCCcEEEeeC
Q psy3672 106 NWTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 106 a~~~~LV~~P~~fDViv~~N 125 (178)
.++.++++...++|.|+|.|
T Consensus 228 ~~~~~ll~~~~~~~ai~~~n 247 (339)
T 3h5o_A 228 DMLDRALAERPDCDALFCCN 247 (339)
T ss_dssp HHHHHHHHHCTTCCEEEESS
T ss_pred HHHHHHHcCCCCCcEEEECC
Confidence 45566676666789999987
No 79
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=28.18 E-value=99 Score=23.68 Aligned_cols=25 Identities=12% Similarity=-0.016 Sum_probs=16.6
Q ss_pred cHHHHHHHHHHHhCCCCcEEEEeCC
Q psy3672 27 DPCPRFSYVQDLLSNRKKVTAVHKA 51 (178)
Q Consensus 27 eRiar~AFe~A~~~~rk~Vt~vhKa 51 (178)
....+.|.++-.++|.+++-++.-.
T Consensus 122 ~~~~~~a~~~L~~~G~~~i~~i~~~ 146 (298)
T 3tb6_A 122 VKGGMMAAEHLLSLGHTHMMGIFKA 146 (298)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred HHHHHHHHHHHHHCCCCcEEEEcCC
Confidence 3456666677677787888777543
No 80
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=27.96 E-value=2.1e+02 Score=22.01 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=14.5
Q ss_pred HHHHHHhhC-C-CCCcEEEeeC
Q psy3672 106 NWTRQIVSN-P-HQFDVMVMPN 125 (178)
Q Consensus 106 a~~~~LV~~-P-~~fDViv~~N 125 (178)
..+.++++. | ..+|.|+|.|
T Consensus 190 ~~~~~~l~~~~~~~~~ai~~~~ 211 (309)
T 2fvy_A 190 DKMDAWLSGPNANKIEVVIANN 211 (309)
T ss_dssp HHHHHHHTSTTGGGCCEEEESS
T ss_pred HHHHHHHHhCCCCCccEEEECC
Confidence 345666765 6 5899999976
No 81
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=27.64 E-value=1.4e+02 Score=22.99 Aligned_cols=22 Identities=0% Similarity=-0.168 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhCCCCcEEEEe
Q psy3672 28 PCPRFSYVQDLLSNRKKVTAVH 49 (178)
Q Consensus 28 Riar~AFe~A~~~~rk~Vt~vh 49 (178)
...+.|.++..++|.+++-++.
T Consensus 111 ~~g~~a~~~L~~~G~~~i~~i~ 132 (290)
T 3clk_A 111 DIGYQATNLLINEGHRQIGIAG 132 (290)
T ss_dssp HHHHHHHHHHHTTTCCSEEEES
T ss_pred HHHHHHHHHHHHcCCCEEEEEe
Confidence 4566677777777878887775
No 82
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=27.59 E-value=1.1e+02 Score=24.37 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeC
Q psy3672 28 PCPRFSYVQDLLSNRKKVTAVHK 50 (178)
Q Consensus 28 Riar~AFe~A~~~~rk~Vt~vhK 50 (178)
...+.|.++-.++|.+++-++.-
T Consensus 158 ~~~~~a~~~L~~~G~~~I~~i~~ 180 (330)
T 3ctp_A 158 NGGRMAFDHLYEKGCRKILHIKG 180 (330)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEC
T ss_pred HHHHHHHHHHHHCCCCeEEEEeC
Confidence 35566667666778788877754
No 83
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II, structural genomics, protein structure initiative; 2.30A {Streptomyces coelicolor}
Probab=27.45 E-value=2.5e+02 Score=22.78 Aligned_cols=41 Identities=7% Similarity=0.148 Sum_probs=26.4
Q ss_pred CCcEEEEeCCCccccccHHHHHHHHHHHhhCCCeEEEEEEE
Q psy3672 42 RKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMIT 82 (178)
Q Consensus 42 rk~Vt~vhKaNvlk~tdglf~~i~~eva~eYpdv~~~~~~v 82 (178)
+..||+.+-..--......+.++.++..++||+|+++....
T Consensus 7 ~~tl~~~~~~~~~~~~~~~~~~~~~~f~~~~p~i~V~~~~~ 47 (405)
T 3i3v_A 7 PDTLVVHTQLGTTAPGSPTYLAAVDRFREENPGVKIKNLVN 47 (405)
T ss_dssp CCSEEEEESCSSSSTTHHHHHHHHHHHHHHSTTCCEEEEEC
T ss_pred CcEEEEEeecCCCchhhHHHHHHHHHHHHHCCCcEEEEEEC
Confidence 45788876322211124577888888778999988875433
No 84
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=26.91 E-value=1.2e+02 Score=23.61 Aligned_cols=23 Identities=4% Similarity=-0.184 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeC
Q psy3672 28 PCPRFSYVQDLLSNRKKVTAVHK 50 (178)
Q Consensus 28 Riar~AFe~A~~~~rk~Vt~vhK 50 (178)
...+.|.++-.++|.+++-++.-
T Consensus 119 ~~g~~a~~~L~~~G~~~I~~i~~ 141 (289)
T 2fep_A 119 QAIYDAVKLLVDKGHTDIAFVSG 141 (289)
T ss_dssp HHHHHHHHHHHHTTCSSEEEEES
T ss_pred HHHHHHHHHHHHCCCCeEEEEeC
Confidence 45566666666677788877753
No 85
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=26.73 E-value=1.5e+02 Score=23.13 Aligned_cols=20 Identities=5% Similarity=0.084 Sum_probs=13.7
Q ss_pred HHHHHHhhCC---CCCcEEEeeC
Q psy3672 106 NWTRQIVSNP---HQFDVMVMPN 125 (178)
Q Consensus 106 a~~~~LV~~P---~~fDViv~~N 125 (178)
..+.++++.+ .++|.|+|.|
T Consensus 177 ~~~~~ll~~~~~~~~~~ai~~~n 199 (306)
T 2vk2_A 177 EVMESFIKAENNGKNICMVYAHN 199 (306)
T ss_dssp HHHHHHHHHTTTTTTCCEEEESS
T ss_pred HHHHHHHHhCCCCCCeeEEEECC
Confidence 3455666654 5689999977
No 86
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=26.58 E-value=3.2e+02 Score=24.34 Aligned_cols=14 Identities=14% Similarity=0.444 Sum_probs=11.9
Q ss_pred CCCCCcEEEeeCCC
Q psy3672 114 NPHQFDVMVMPNLY 127 (178)
Q Consensus 114 ~P~~fDViv~~Nl~ 127 (178)
.++.||||+|..++
T Consensus 131 ~~~~fD~v~~~e~~ 144 (569)
T 4azs_A 131 EEGEFDLAIGLSVF 144 (569)
T ss_dssp CTTSCSEEEEESCH
T ss_pred cCCCccEEEECcch
Confidence 57899999998875
No 87
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=26.39 E-value=39 Score=23.58 Aligned_cols=26 Identities=4% Similarity=-0.089 Sum_probs=20.9
Q ss_pred ccccHHHHHHHHHHHhCCCCcEEEEeC
Q psy3672 24 ETIDPCPRFSYVQDLLSNRKKVTAVHK 50 (178)
Q Consensus 24 ~~~eRiar~AFe~A~~~~rk~Vt~vhK 50 (178)
+.+++.+++|.++|+..+ .+|+++|=
T Consensus 17 ~~s~~al~~a~~la~~~~-a~l~ll~v 42 (150)
T 3tnj_A 17 SEDSQVVQKVRNLASQIG-ARLSLIHV 42 (150)
T ss_dssp TTHHHHHHHHHHHHHHHT-CEEEEEEE
T ss_pred HHHHHHHHHHHHHHhhcC-CEEEEEEE
Confidence 457899999999999864 67888773
No 88
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=26.12 E-value=1.5e+02 Score=23.42 Aligned_cols=48 Identities=15% Similarity=0.061 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCC
Q psy3672 59 GLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNL 126 (178)
Q Consensus 59 glf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl 126 (178)
..+.++.++..++||+++++...- + +..+..++...-..+||++..+.
T Consensus 17 ~~~~~l~~~F~~~~~gi~V~~~~~-------~-------------s~~l~~~i~~~g~~~Dv~~~a~~ 64 (296)
T 3cfx_A 17 VPFEELEAEFEAQHPGVDVQREAA-------G-------------SAQSVRKITELGKKADVLASADY 64 (296)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEEC-------C-------------HHHHHHHHHTSCCCCSEEEESST
T ss_pred HHHHHHHHHHHHHCCCceEEEEeC-------c-------------hHHHHHHHHhCCCCCcEEEECCh
Confidence 356677666666889988864222 1 14566666652335888777654
No 89
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=25.62 E-value=1.9e+02 Score=22.52 Aligned_cols=24 Identities=0% Similarity=-0.209 Sum_probs=16.1
Q ss_pred cHHHHHHHHHHHhCCCCcEEEEeC
Q psy3672 27 DPCPRFSYVQDLLSNRKKVTAVHK 50 (178)
Q Consensus 27 eRiar~AFe~A~~~~rk~Vt~vhK 50 (178)
....+.|.++-.++|.+++-++.-
T Consensus 129 ~~~g~~a~~~L~~~G~~~I~~i~~ 152 (305)
T 3huu_A 129 IDAAYQLTQYLYHLGHRHILFLQE 152 (305)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCeEEEEcC
Confidence 345666777777778788777753
No 90
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=25.61 E-value=1.9e+02 Score=22.84 Aligned_cols=21 Identities=5% Similarity=-0.096 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhhCCCeEEEE
Q psy3672 59 GLFLNSCKEMAKLYPVWTNRK 79 (178)
Q Consensus 59 glf~~i~~eva~eYpdv~~~~ 79 (178)
..+.++.++..++||+++++.
T Consensus 17 ~~~~~l~~~F~~~~~gi~V~~ 37 (295)
T 3cij_A 17 EPMKAFKRAFEEKHPNVEVQT 37 (295)
T ss_dssp HHHHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHHHHHHCCCceEEE
Confidence 356666666566889988864
No 91
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=25.57 E-value=1.5e+02 Score=22.79 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=14.5
Q ss_pred HHHHHHhh-CCC-CCcEEEeeC
Q psy3672 106 NWTRQIVS-NPH-QFDVMVMPN 125 (178)
Q Consensus 106 a~~~~LV~-~P~-~fDViv~~N 125 (178)
..+.++++ .+. ++|.|+|.|
T Consensus 175 ~~~~~~l~~~~~~~~~ai~~~~ 196 (287)
T 3bbl_A 175 AMTLHLLDLSPERRPTAIMTLN 196 (287)
T ss_dssp HHHHHHHTSCTTTSCSEEEESS
T ss_pred HHHHHHHhhCCCCCCcEEEECC
Confidence 45567777 655 789999986
No 92
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=25.38 E-value=2e+02 Score=22.68 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEEEeeeeccccccceeEEEeecccccHHHHHHhhCCCCCcEEEeeCC
Q psy3672 59 GLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNL 126 (178)
Q Consensus 59 glf~~i~~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~~~~~~i~~Da~~~~LV~~P~~fDViv~~Nl 126 (178)
..+.++.++..++||+++++...-. +..+..|+...-..+||++..+.
T Consensus 17 ~~~~~l~~~F~~~~~gi~V~~~~~~--------------------s~~l~~~i~~~g~~~Dv~~~a~~ 64 (292)
T 3cfz_A 17 VPFEEYEKMFEKEHPNVDVEREPAG--------------------SVACVRKIIDLGKKADILASADY 64 (292)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEC--------------------HHHHHHHHHTSCCCCSEEEESST
T ss_pred HHHHHHHHHHHHHCCCceEEEEeCC--------------------HHHHHHHHHhcCCCCcEEEECCh
Confidence 3566666665567899887643321 14556666552335787776553
No 93
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=25.38 E-value=38 Score=23.46 Aligned_cols=26 Identities=8% Similarity=-0.079 Sum_probs=20.5
Q ss_pred ccccHHHHHHHHHHHhCCCCcEEEEeC
Q psy3672 24 ETIDPCPRFSYVQDLLSNRKKVTAVHK 50 (178)
Q Consensus 24 ~~~eRiar~AFe~A~~~~rk~Vt~vhK 50 (178)
+.+++.+++|.++|+..+ .+|+++|=
T Consensus 16 ~~s~~al~~A~~la~~~~-a~l~ll~v 41 (146)
T 3s3t_A 16 DAAQAAFTEAVNIAQRHQ-ANLTALYV 41 (146)
T ss_dssp HHHHHHHHHHHHHHHHHT-CEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcC-CEEEEEEE
Confidence 457899999999998764 67777763
No 94
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=25.06 E-value=61 Score=22.27 Aligned_cols=25 Identities=0% Similarity=-0.070 Sum_probs=20.8
Q ss_pred ccccHHHHHHHHHHHhCCCCcEEEEe
Q psy3672 24 ETIDPCPRFSYVQDLLSNRKKVTAVH 49 (178)
Q Consensus 24 ~~~eRiar~AFe~A~~~~rk~Vt~vh 49 (178)
+.+++.+++|.++|+.. ..+|+++|
T Consensus 15 ~~s~~al~~a~~la~~~-~a~l~ll~ 39 (138)
T 1q77_A 15 SDCEKAITYAVNFSEKL-GAELDILA 39 (138)
T ss_dssp CCCHHHHHHHHHHHTTT-CCEEEEEE
T ss_pred HhHHHHHHHHHHHHHHc-CCeEEEEE
Confidence 45789999999999876 46899987
No 95
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=24.99 E-value=40 Score=23.33 Aligned_cols=27 Identities=4% Similarity=-0.156 Sum_probs=21.5
Q ss_pred ccccHHHHHHHHHHHhCCCCcEEEEeCC
Q psy3672 24 ETIDPCPRFSYVQDLLSNRKKVTAVHKA 51 (178)
Q Consensus 24 ~~~eRiar~AFe~A~~~~rk~Vt~vhKa 51 (178)
+.+++.+++|.++|++.+ .+|+++|=.
T Consensus 13 ~~s~~al~~A~~la~~~~-a~l~ll~v~ 39 (147)
T 3hgm_A 13 KGAVKALEKGVGLQQLTG-AELYILCVF 39 (147)
T ss_dssp HHHHHHHHHHHHHHHHHC-CEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcC-CEEEEEEEe
Confidence 457899999999998764 678888743
No 96
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=24.73 E-value=1.8e+02 Score=23.24 Aligned_cols=19 Identities=11% Similarity=0.118 Sum_probs=12.9
Q ss_pred HHHHHhhCCCCCcEEEeeC
Q psy3672 107 WTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 107 ~~~~LV~~P~~fDViv~~N 125 (178)
.+.++++...+.|.|+|.|
T Consensus 195 ~~~~~L~~~~~~~aI~~~~ 213 (350)
T 3h75_A 195 QAQQLLKRYPKTQLVWSAN 213 (350)
T ss_dssp HHHHHHHHCTTEEEEEESS
T ss_pred HHHHHHHhCCCcCEEEECC
Confidence 4555665555688888876
No 97
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=24.70 E-value=94 Score=23.86 Aligned_cols=24 Identities=4% Similarity=-0.096 Sum_probs=17.3
Q ss_pred cHHHHHHHHHHHhCCCCcEEEEeC
Q psy3672 27 DPCPRFSYVQDLLSNRKKVTAVHK 50 (178)
Q Consensus 27 eRiar~AFe~A~~~~rk~Vt~vhK 50 (178)
....+.|.++-.++|.+++-++.-
T Consensus 108 ~~~g~~a~~~L~~~G~~~I~~i~~ 131 (276)
T 3jy6_A 108 FEAAKAATTAFRQQGYQHVVVLTS 131 (276)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCeEEEEec
Confidence 446677777777788888877754
No 98
>2peb_A Putative dioxygenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 1.46A {Nostoc punctiforme}
Probab=24.06 E-value=1.3e+02 Score=22.64 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=24.0
Q ss_pred cHHHHHHhhCCCCCcEEEeeCCCcccccc
Q psy3672 105 FNWTRQIVSNPHQFDVMVMPNLYGNIFDV 133 (178)
Q Consensus 105 Da~~~~LV~~P~~fDViv~~Nl~GDILSD 133 (178)
+....+|..|-++++|+|-||- ||=+-|
T Consensus 67 ~~~v~WL~lnrg~LsVLiHP~T-gddl~D 94 (122)
T 2peb_A 67 DKVVPWLMLNREGLDILVHPET-GDAVSD 94 (122)
T ss_dssp HHHHHHHHHHCTTCCEEEEEES-SCHHHH
T ss_pred HHHHHHHHHhCCCceEEECCCC-Cchhhh
Confidence 7889999999999999999998 664443
No 99
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=23.90 E-value=31 Score=23.51 Aligned_cols=25 Identities=8% Similarity=-0.057 Sum_probs=20.3
Q ss_pred cccccHHHHHHHHHHHhCCCCcEEE
Q psy3672 23 EETIDPCPRFSYVQDLLSNRKKVTA 47 (178)
Q Consensus 23 ~~~~eRiar~AFe~A~~~~rk~Vt~ 47 (178)
+...+.|++.|.++++-.+|++||.
T Consensus 37 Eyr~~eI~qeA~kfmrHakRk~Lt~ 61 (70)
T 1taf_B 37 SIKLKRIVQDAAKFMNHAKRQKLSV 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCeecH
Confidence 3447788999999999888888774
No 100
>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}
Probab=23.11 E-value=2.5e+02 Score=21.24 Aligned_cols=72 Identities=13% Similarity=0.175 Sum_probs=47.0
Q ss_pred eeecccccHHHHHHHHHHHhCCCCcEEEEeCCCccccccHHHHHHH---HHHHhhCCCeEEEEEEEeeeeccccccceeE
Q psy3672 20 LRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSC---KEMAKLYPVWTNRKMITGFIWTTRDINVFIW 96 (178)
Q Consensus 20 ~~t~~~~eRiar~AFe~A~~~~rk~Vt~vhKaNvlk~tdglf~~i~---~eva~eYpdv~~~~~~v~~~~~~~~~~~~i~ 96 (178)
..+.++...+.|..|.=||..|-|+|++ |+.. +=-|++.. +|.--+-=|+-++ + .+|+..+-
T Consensus 11 ~v~~E~l~n~fRk~fkD~R~~GskKvvi----Nvis--~~~y~e~v~~~REAiLDNIDlG~e--l--~~WKp~eV----- 75 (126)
T 2rbg_A 11 SVNNDNFENYFRKIFLDVRSSGSKKTTI----NVFT--EIQYQELVTLIREALLENIDIGYE--L--FLWKKNEV----- 75 (126)
T ss_dssp ECCGGGHHHHHHHHHHHHHHHTCSEEEE----EEEC--SSCHHHHHHHTHHHHHHTTTSEEE--E--EEECGGGH-----
T ss_pred ecchhhHHHHHHHHHHHHHhcCCceEEE----EEec--CCcHHHHHHHHHHHHHhccccceE--E--EEeCHHHH-----
Confidence 3346778889999999999999888887 6664 22344443 3322243455554 1 24666553
Q ss_pred EEeecccccHHHHHHhhC
Q psy3672 97 TIRRIITVFNWTRQIVSN 114 (178)
Q Consensus 97 ~~~~~i~~Da~~~~LV~~ 114 (178)
|-|..++.+.
T Consensus 76 --------dkm~~k~~q~ 85 (126)
T 2rbg_A 76 --------DIFLKNLEKS 85 (126)
T ss_dssp --------HHHHHHHTTC
T ss_pred --------HHHHHHHHHh
Confidence 8888888877
No 101
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=22.71 E-value=1.6e+02 Score=23.30 Aligned_cols=20 Identities=0% Similarity=0.094 Sum_probs=15.1
Q ss_pred HHHHHHhhCCCCCcEEEeeC
Q psy3672 106 NWTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 106 a~~~~LV~~P~~fDViv~~N 125 (178)
..+.++++.+..+|.|+|.|
T Consensus 228 ~~~~~ll~~~~~~~ai~~~n 247 (332)
T 2hsg_A 228 EAVEKLLEEDEKPTAIFVGT 247 (332)
T ss_dssp HHHHHHHHSSSCCSEEEESS
T ss_pred HHHHHHHcCCCCCeEEEECC
Confidence 45667777777789999876
No 102
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=22.68 E-value=1.4e+02 Score=23.78 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=14.1
Q ss_pred HHHHHHhhCCCCCcEEEeeC
Q psy3672 106 NWTRQIVSNPHQFDVMVMPN 125 (178)
Q Consensus 106 a~~~~LV~~P~~fDViv~~N 125 (178)
.++.++++...++|.|+|.|
T Consensus 236 ~~~~~ll~~~~~~~ai~~~n 255 (344)
T 3kjx_A 236 EMTQAMLERSPDLDFLYYSN 255 (344)
T ss_dssp HHHHHHHHHSTTCCEEEESS
T ss_pred HHHHHHHhcCCCCCEEEECC
Confidence 44566666555789999887
No 103
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=22.56 E-value=52 Score=22.65 Aligned_cols=25 Identities=12% Similarity=0.011 Sum_probs=20.0
Q ss_pred ccccHHHHHHHHHHHhCCCCcEEEEe
Q psy3672 24 ETIDPCPRFSYVQDLLSNRKKVTAVH 49 (178)
Q Consensus 24 ~~~eRiar~AFe~A~~~~rk~Vt~vh 49 (178)
+.+++.+++|.++|+..+ .+|+++|
T Consensus 13 ~~s~~al~~a~~la~~~~-a~l~ll~ 37 (141)
T 1jmv_A 13 EESPILLKKAVGIAKRHD-AKLSIIH 37 (141)
T ss_dssp TTHHHHHHHHHHHHHHHT-CEEEEEE
T ss_pred hhhHHHHHHHHHHHHhcC-CEEEEEE
Confidence 457889999999998764 6788876
No 104
>2p8i_A Putative dioxygenase; YP_555069.1, structural genomics, JOIN for structural genomics, JCSG, protein structure initiative oxidoreductase; HET: MSE CIT; 1.40A {Burkholderia xenovorans} SCOP: d.58.55.1 PDB: 2nyh_A*
Probab=22.45 E-value=53 Score=24.55 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=23.6
Q ss_pred cHHHHHHhhCCCCCcEEEeeCCCcccccc
Q psy3672 105 FNWTRQIVSNPHQFDVMVMPNLYGNIFDV 133 (178)
Q Consensus 105 Da~~~~LV~~P~~fDViv~~Nl~GDILSD 133 (178)
++...+|..|-++++|+|-||- ||=+.|
T Consensus 70 ~~~v~WL~~nrg~LsVLiHP~T-gddl~D 97 (117)
T 2p8i_A 70 ADLVGWLTLNHGALDIFLHPNT-GDALRD 97 (117)
T ss_dssp HHHHHHHHHHCTTCCEEEEEES-SCHHHH
T ss_pred HHHHHHHHHhCCCCeEEEcCCC-Cchhhh
Confidence 7888999999999999999998 664433
No 105
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=22.15 E-value=44 Score=23.00 Aligned_cols=25 Identities=24% Similarity=0.150 Sum_probs=20.4
Q ss_pred cccccHHHHHHHHHHHhCCCCcEEE
Q psy3672 23 EETIDPCPRFSYVQDLLSNRKKVTA 47 (178)
Q Consensus 23 ~~~~eRiar~AFe~A~~~~rk~Vt~ 47 (178)
+.-.+.+++.|..||...+||.||.
T Consensus 41 ~~~~~~I~~dA~~~a~ha~RKTvt~ 65 (84)
T 2hue_C 41 KVFLENVIRDAVTYTEHAKRKTVTA 65 (84)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEECH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCcH
Confidence 4457788999999999988887765
No 106
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=21.36 E-value=52 Score=23.22 Aligned_cols=26 Identities=4% Similarity=-0.057 Sum_probs=20.9
Q ss_pred ccccHHHHHHHHHHHhCCCCcEEEEeC
Q psy3672 24 ETIDPCPRFSYVQDLLSNRKKVTAVHK 50 (178)
Q Consensus 24 ~~~eRiar~AFe~A~~~~rk~Vt~vhK 50 (178)
+.+++.+++|.++|+..+ .+|+++|=
T Consensus 28 ~~s~~al~~a~~la~~~~-a~l~ll~v 53 (156)
T 3fg9_A 28 TSSERAFRYATTLAHDYD-VPLGICSV 53 (156)
T ss_dssp HHHHHHHHHHHHHHHHHT-CCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcC-CEEEEEEE
Confidence 568899999999998864 67888763
No 107
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=21.13 E-value=46 Score=25.04 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=21.8
Q ss_pred cccccHHHHHHHHHHHhCCCCcEEEEe
Q psy3672 23 EETIDPCPRFSYVQDLLSNRKKVTAVH 49 (178)
Q Consensus 23 ~~~~eRiar~AFe~A~~~~rk~Vt~vh 49 (178)
+.-.+.|+|.|..||.-.+||.||.-|
T Consensus 78 ~~~l~~i~rdav~yaehA~RKTVta~D 104 (121)
T 2ly8_A 78 KSFLESVIRDSVTYTEHAKRKTVTSLD 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCBCHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCcHHH
Confidence 344678999999999999999887643
No 108
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=21.07 E-value=46 Score=23.76 Aligned_cols=25 Identities=24% Similarity=0.150 Sum_probs=20.0
Q ss_pred cccccHHHHHHHHHHHhCCCCcEEE
Q psy3672 23 EETIDPCPRFSYVQDLLSNRKKVTA 47 (178)
Q Consensus 23 ~~~~eRiar~AFe~A~~~~rk~Vt~ 47 (178)
+.-++.|++.|.++|...+|++||.
T Consensus 60 e~~~~~V~~dA~~~a~hakRktIt~ 84 (103)
T 1tzy_D 60 KVFLENVIRDAVTYTEHAKRKTVTA 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEECH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCH
Confidence 4457788999999999988887764
No 109
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=20.92 E-value=47 Score=23.77 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=20.1
Q ss_pred cccccHHHHHHHHHHHhCCCCcEEE
Q psy3672 23 EETIDPCPRFSYVQDLLSNRKKVTA 47 (178)
Q Consensus 23 ~~~~eRiar~AFe~A~~~~rk~Vt~ 47 (178)
+.-++.|++.|.++|...+|++||.
T Consensus 60 e~~~~~V~~dA~~~a~hakRktvt~ 84 (103)
T 2yfw_B 60 KTFLESVIRDAVTYTEHAKRKTVTS 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEECH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCcH
Confidence 4457788999999999988887765
Done!