RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3672
(178 letters)
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national
project protein structural and functional analyses; HET:
NAP CIT; 1.80A {Thermus thermophilus}
Length = 496
Score = 111 bits (279), Expect = 2e-29
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 24/99 (24%)
Query: 32 FSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDI 91
F + RKKV K+NIMKL +G + +++A+ YP +I
Sbjct: 175 FELARA--EGRKKVHCATKSNIMKLAEGTLKRAFEQVAQEYPDIEAVHII---------- 222
Query: 92 NVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNI 130
V N Q+V P QF+V+V N+ G+I
Sbjct: 223 ------------VDNAAHQLVKRPEQFEVIVTTNMNGDI 249
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative
metabolism, allostery, decarboxylase, allosteric enzyme,
magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B*
3blv_B
Length = 354
Score = 109 bits (275), Expect = 3e-29
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 35/118 (29%)
Query: 32 FSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDI 91
F Y + R +V VHK+ I +L DGLF+N KE++K YP T +
Sbjct: 173 FEYARA--IGRPRVIVVHKSTIQRLADGLFVNVAKELSKEYPDLTLETEL---------- 220
Query: 92 NVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLAS 149
+ N ++V+NP + V V PNLYG+I+ +L S
Sbjct: 221 ------------IDNSVLKVVTNPSAYTD-----------AVSVCPNLYGDILSDLNS 255
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative
metabolism, allostery, decarboxylase, allosteric enzyme,
magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A
3blv_A*
Length = 349
Score = 105 bits (263), Expect = 1e-27
Identities = 42/100 (42%), Positives = 51/100 (51%), Gaps = 25/100 (25%)
Query: 32 FSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMA-KLYPVWTNRKMITGFIWTTRD 90
F + + NRK VTAVHKANIMKLGDGLF N E+ K YP +I
Sbjct: 167 FDFAKK--YNRKSVTAVHKANIMKLGDGLFRNIITEIGQKEYPDIDVSSII--------- 215
Query: 91 INVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNI 130
V N + Q V+ PHQFDV+V P++YG I
Sbjct: 216 -------------VDNASMQAVAKPHQFDVLVTPSMYGTI 242
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating
dehydrogenase, lysine biosyn; 1.85A {Thermus
thermophilus} PDB: 3asj_A* 3ah3_A
Length = 333
Score = 100 bits (251), Expect = 5e-26
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 22/90 (24%)
Query: 41 NRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRR 100
RK + HKAN++ L GLFL++ KE+AK +P+ + +I
Sbjct: 161 PRKTLHIAHKANVLPLTQGLFLDTVKEVAKDFPLVNVQDII------------------- 201
Query: 101 IITVFNWTRQIVSNPHQFDVMVMPNLYGNI 130
V N Q+V P +FDV+V NL G+I
Sbjct: 202 ---VDNCAMQLVMRPERFDVIVTTNLLGDI 228
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus
tokodaii} SCOP: c.77.1.1
Length = 336
Score = 99.2 bits (248), Expect = 1e-25
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 24/92 (26%)
Query: 39 LSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTI 98
L RKKVT VHKAN+M++ DGLF +C+ + K +
Sbjct: 158 LRRRKKVTCVHKANVMRITDGLFAEACRSVLK------------------GKV-----EY 194
Query: 99 RRIITVFNWTRQIVSNPHQFDVMVMPNLYGNI 130
+ V +V NP FDV+V N+YG+I
Sbjct: 195 SEMY-VDAAAANLVRNPQMFDVIVTENVYGDI 225
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
domain swapping, phosphorylation, aromatic cluster,
NADP; 2.5A {Archaeoglobus fulgidus}
Length = 412
Score = 97.0 bits (242), Expect = 2e-24
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 41 NRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIR- 99
NRK VT VHK NIMK +G F + E+AK + +W I
Sbjct: 214 NRKSVTLVHKGNIMKYTEGAFRDWGYEVAKQEF--GEYCITEDELWDKYGGKQPEGKIVV 271
Query: 100 --RIITVFNWTRQIVSNPHQFDVMVMPNLYGNI 130
RI +QI++ ++DV+ +PNL G+
Sbjct: 272 KDRIADNM--FQQILTRTDEYDVIALPNLNGDY 302
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural
genomics center for infectious ssgcid, glyoxylate
bypass, manganese; 1.65A {Burkholderia pseudomallei}
PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A
1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A*
1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ...
Length = 427
Score = 95.8 bits (239), Expect = 6e-24
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 32 FSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDI 91
Y D ++RK VT VHK NIMK +G F ++ +A+ +
Sbjct: 224 IQYAID--NDRKSVTLVHKGNIMKFTEGAFRDAGYALAQKEFGAELIDGGPWMKFKNPKT 281
Query: 92 NVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNI 130
I I F +QI+ P ++DV+ NL G+
Sbjct: 282 GNEIVVKDSIADAF--LQQILLRPAEYDVIATLNLNGDY 318
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex,
oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB:
1v94_A 1xgv_A 1xkd_A*
Length = 435
Score = 95.9 bits (239), Expect = 7e-24
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Query: 41 NRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIR- 99
VT +HK NIMK +G F+ E+A + + I
Sbjct: 224 GNTVVTIMHKGNIMKYTEGAFMRWAYEVALEKF--REHVVTEQEVQEKYGGVRPEGKILV 281
Query: 100 --RIITVFNWTRQIVSNPHQFDVMVMPNLYGNI 130
RI +QI++ P + V+V PNL G+
Sbjct: 282 NDRIADNM--LQQIITRPWDYQVIVAPNLNGDY 312
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase;
homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii
str} PDB: 2dht_A 2e5m_A*
Length = 409
Score = 92.7 bits (231), Expect = 8e-23
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 41 NRKKVTAVHKANIMKLGDGLFLNSCKEMA-KLYPVWTNRKMITGFIWTTRDINVFIWTIR 99
RKKVT +HK N+MK +G F E+A K Y + + I + I
Sbjct: 214 KRKKVTIMHKGNVMKYTEGAFREWAYEVALKEYR---DFIVTEEEINQGKPDQGKIILND 270
Query: 100 RIITVFNWTRQIVSNPHQFDVMVMPNLYGNI 130
RI +QI+ P ++D+++ PN+ G+
Sbjct: 271 RIADNM--FQQIIIRPEEYDIILAPNVNGDY 299
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative
decarboxylase, amino-acid biosynthes lysine
biosynthesis; 1.55A {Schizosaccharomyces pombe} PDB:
3ty3_A
Length = 366
Score = 89.2 bits (222), Expect = 1e-21
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 25/94 (26%)
Query: 40 SNRKKVTAVHKANIMKLGDGLFLNSCK---EMAKLYPVWTNRKMITGFIWTTRDINVFIW 96
+ VT +HK+N+M + DGLF SC+ + Y + I
Sbjct: 190 HKKPLVTIIHKSNVMSVTDGLFRESCRHAQSLDPSYASINVDEQI--------------- 234
Query: 97 TIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNI 130
V + ++ P FDV+V PNLYG+I
Sbjct: 235 -------VDSMVYRLFREPECFDVVVAPNLYGDI 261
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic
acid cycle, oxidoreductase, protein phosphorylation,
NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP:
c.77.1.1
Length = 423
Score = 89.3 bits (222), Expect = 1e-21
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 15/103 (14%)
Query: 41 NRKKVTAVHKANIMKLGDGLFLNSCKEMAKLY--------PVWTNRKMITGFIWTTRDIN 92
RK VT VHK NIMK +G F N E+A+ + G + +
Sbjct: 212 GRKSVTLVHKGNIMKFTEGAFKNWGYELAEKEYGDKVFTWAQYDRIAEEQGKDAANKAQS 271
Query: 93 VFIWTIR-----RIITVFNWTRQIVSNPHQFDVMVMPNLYGNI 130
+ I +F +QI++ P++FDV+ NL G+
Sbjct: 272 EAEAAGKIIIKDSIADIF--LQQILTRPNEFDVVATMNLNGDY 312
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein,
isocitrate/isopropylmalate dehydrogenase-like fold,
oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus
thiooxidans}
Length = 429
Score = 77.0 bits (190), Expect = 3e-17
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 15/103 (14%)
Query: 41 NRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPV--------WTNRKMITGFIWTTRDIN 92
+ V+ VHK NIMK +G F + +A+ G +
Sbjct: 221 GKPSVSLVHKGNIMKFTEGGFRDWGYALAEREFAGRVFTWRQKAAISKAEGKAAGQKAEQ 280
Query: 93 VF-----IWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNI 130
+ I F +QI+ P + V+ NL G+
Sbjct: 281 QAIADGKLIIKDVIADNF--LQQILLRPEDYSVVATLNLNGDY 321
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium,
manganese, NAD, oxidoreductase; HET: NAD; 2.00A
{Pseudomonas putida} PDB: 3fmx_X*
Length = 364
Score = 64.5 bits (158), Expect = 6e-13
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 24/91 (26%)
Query: 41 NRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYP-VWTNRKMITGFIWTTRDINVFIWTIR 99
RK VT+ K+N M + + + MA YP V +++ I D
Sbjct: 183 ERKHVTSATKSNGMAISMPYWDKRTEAMAAHYPHVSWDKQHI--------D--------- 225
Query: 100 RIITVFNWTRQIVSNPHQFDVMVMPNLYGNI 130
+ V P +FDV+V NL+G+I
Sbjct: 226 ------ILCARFVLQPERFDVVVASNLFGDI 250
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine
biosynthesis, NAD, ST genomics, PSI, protein structure
initiative; 1.65A {Mycobacterium tuberculosis} SCOP:
c.77.1.1 PDB: 2g4o_A
Length = 337
Score = 52.9 bits (128), Expect = 6e-09
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 22/91 (24%)
Query: 40 SNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIR 99
RK +T VHK N++ GL+L + E+ + YP
Sbjct: 169 RRRKHLTLVHKTNVLTFAGGLWLRTVDEVGECYPDVEVAYQH------------------ 210
Query: 100 RIITVFNWTRQIVSNPHQFDVMVMPNLYGNI 130
V T ++++P +FDV+V NL+G+I
Sbjct: 211 ----VDAATIHMITDPGRFDVIVTDNLFGDI 237
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB:
2ayq_A 1v53_A 1v5b_A
Length = 390
Score = 47.2 bits (113), Expect = 6e-07
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 23/89 (25%)
Query: 42 RKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRI 101
+KKVT+V KAN+++ L+ +E+AK YP D+ +
Sbjct: 203 KKKVTSVDKANVLESSR-LWREVAEEVAKEYP----------------DVEL------EH 239
Query: 102 ITVFNWTRQIVSNPHQFDVMVMPNLYGNI 130
+ V N Q++ NP QFDV+V N++G+I
Sbjct: 240 MLVDNAAMQLIRNPRQFDVIVTENMFGDI 268
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid,
oxidoreductase; 1.85A {Campylobacter jejuni} PDB: 3udo_A
Length = 361
Score = 47.2 bits (113), Expect = 7e-07
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 23/89 (25%)
Query: 42 RKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRI 101
+KKV + KAN++ L+ +AK Y DIN+
Sbjct: 184 KKKVHLIDKANVLASSI-LWREVVANVAKDYQ----------------DINL------EY 220
Query: 102 ITVFNWTRQIVSNPHQFDVMVMPNLYGNI 130
+ V N QIV NP FDVM+ NL+G+I
Sbjct: 221 MYVDNAAMQIVKNPSIFDVMLCSNLFGDI 249
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate
and isopropylmalate dehydrogenases family, biosynthesis;
2.25A {Arabidopsis thaliana}
Length = 405
Score = 46.5 bits (111), Expect = 1e-06
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 23/89 (25%)
Query: 42 RKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRI 101
R K+ +V KAN+++ L+ +A YP D+ +
Sbjct: 224 RGKLCSVDKANVLEASI-LWRKRVTALASEYP----------------DVEL------SH 260
Query: 102 ITVFNWTRQIVSNPHQFDVMVMPNLYGNI 130
+ V N Q+V +P QFD +V N++G+I
Sbjct: 261 MYVDNAAMQLVRDPKQFDTIVTNNIFGDI 289
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase,
decarboxylating dehydrogenase, leucine biosynthesis;
HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP:
c.77.1.1
Length = 358
Score = 46.4 bits (111), Expect = 1e-06
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 23/89 (25%)
Query: 42 RKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRI 101
RK++ +V KAN+++ L+ E+A+ YP D+ +
Sbjct: 182 RKQLCSVDKANVLETTR-LWREVVTEVARDYP----------------DVRL------SH 218
Query: 102 ITVFNWTRQIVSNPHQFDVMVMPNLYGNI 130
+ V N Q++ P QFDV++ N++G+I
Sbjct: 219 MYVDNAAMQLIRAPAQFDVLLTGNMFGDI 247
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine
biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus}
PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A
2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A
1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Length = 359
Score = 46.4 bits (111), Expect = 1e-06
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 23/89 (25%)
Query: 42 RKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRI 101
RK V +V KAN++++G+ + + +E+ + YP D+ +
Sbjct: 180 RKHVVSVDKANVLEVGE-FWRKTVEEVGRGYP----------------DVAL------EH 216
Query: 102 ITVFNWTRQIVSNPHQFDVMVMPNLYGNI 130
V +V +P +FDV+V N++G+I
Sbjct: 217 QYVDAMAMHLVRSPARFDVVVTGNIFGDI 245
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI,
protein structure initiative, joint center for structu
genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Length = 366
Score = 46.4 bits (111), Expect = 1e-06
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 23/89 (25%)
Query: 42 RKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRI 101
RKKVT+V KAN++ L+ E+A+ YP D+ +
Sbjct: 191 RKKVTSVDKANVLYSSM-LWRKVVNEVAREYP----------------DVEL------TH 227
Query: 102 ITVFNWTRQIVSNPHQFDVMVMPNLYGNI 130
I V N Q++ P QFDV++ N++G+I
Sbjct: 228 IYVDNAAMQLILKPSQFDVILTTNMFGDI 256
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase);
oxidoreductase, leucine biosynthetic pathway,
NAD-dependant enzyme; 1.76A {Salmonella typhimurium}
SCOP: c.77.1.1 PDB: 1cm7_A
Length = 363
Score = 46.4 bits (111), Expect = 1e-06
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 23/89 (25%)
Query: 42 RKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRI 101
R+KVT++ KAN+++ L+ ++AK YP D+ +
Sbjct: 187 RRKVTSIDKANVLQSSI-LWREIVNDVAKTYP----------------DVEL------AH 223
Query: 102 ITVFNWTRQIVSNPHQFDVMVMPNLYGNI 130
+ + N T Q++ +P QFDV++ NL+G+I
Sbjct: 224 MYIDNATMQLIKDPSQFDVLLCSNLFGDI 252
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating
dehydrogenase; HET: IPM; 1.48A {Shewanella benthica}
PDB: 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A*
3vl3_A*
Length = 375
Score = 46.4 bits (111), Expect = 1e-06
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 23/89 (25%)
Query: 42 RKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRRI 101
RKKVT+V KAN++ L+ +E+AK YP D+ +
Sbjct: 196 RKKVTSVDKANVLACSV-LWREVVEEVAKDYP----------------DVEL------EH 232
Query: 102 ITVFNWTRQIVSNPHQFDVMVMPNLYGNI 130
I + N T Q++ P++FDVM+ NL+G+I
Sbjct: 233 IYIDNATMQLLRRPNEFDVMLCSNLFGDI 261
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.041
Identities = 15/104 (14%), Positives = 27/104 (25%), Gaps = 37/104 (35%)
Query: 5 LLDRLRQLSVCDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNS 64
+L+ L++L ++ + D + + ++K
Sbjct: 198 VLEMLQKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAELR-------RLLKS-------- 240
Query: 65 CKEMAKLYP--------VWTNRKMITGF------IWTTRDINVF 94
K Y V N K F + TTR V
Sbjct: 241 -----KPYENCLLVLLNVQ-NAKAWNAFNLSCKILLTTRFKQVT 278
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 6.9
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 13/70 (18%)
Query: 14 VCDKVSLRYEETIDP----CPRFSYV-------QDLLSNRKKVTAVHKANIMKLGDGLFL 62
V ++V R ++ YV D ++N + K +I++L L L
Sbjct: 1829 VVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSL 1888
Query: 63 NSCKEMAKLY 72
+ L+
Sbjct: 1889 EEVEGH--LF 1896
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.139 0.440
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,755,850
Number of extensions: 152889
Number of successful extensions: 312
Number of sequences better than 10.0: 1
Number of HSP's gapped: 300
Number of HSP's successfully gapped: 38
Length of query: 178
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 91
Effective length of database: 4,272,666
Effective search space: 388812606
Effective search space used: 388812606
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (24.5 bits)