RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3672
(178 letters)
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 58.6 bits (141), Expect = 3e-11
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 2/95 (2%)
Query: 41 NRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRR 100
+R VT VHK NIMK +G F + ++A+ + I
Sbjct: 221 DRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDV 280
Query: 101 IITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMV 135
I F QI+ P ++DV+ NL G+ +
Sbjct: 281 IADAFLQ--QILLRPAEYDVIACMNLNGDYISDAL 313
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 413
Score = 49.1 bits (116), Expect = 6e-08
Identities = 15/111 (13%), Positives = 31/111 (27%), Gaps = 29/111 (26%)
Query: 39 LSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTI 98
+ + + K I+K DG F + +E+ + +
Sbjct: 201 IQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHY------------------------- 235
Query: 99 RRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLAS 149
+I D MV L + V N G++ ++ +
Sbjct: 236 ----KTDFDKYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILA 282
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus
subtilis [TaxId: 1423]}
Length = 423
Score = 45.9 bits (108), Expect = 6e-07
Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 4/110 (3%)
Query: 41 NRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRR 100
RK VT VHK NIMK +G F N E+A+ K+ T + +
Sbjct: 212 GRKSVTLVHKGNIMKFTEGAFKNWGYELAEKEYG---DKVFTWAQYDRIAEEQGKDAANK 268
Query: 101 IITVFNWTRQIVSNPHQFDVMVMPNLYGNI-FDVMVMPNLYGNIVDNLAS 149
+ +I+ D+ + L FDV+ NL G+ + + +
Sbjct: 269 AQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDALA 318
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Thermotoga maritima [TaxId: 2336]}
Length = 362
Score = 45.1 bits (106), Expect = 1e-06
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 23/97 (23%)
Query: 40 SNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIR 99
+ RKKVT+V KAN++ L+ E+A+ YP +
Sbjct: 185 NRRKKVTSVDKANVLY-SSMLWRKVVNEVAREYPDVELTHIY------------------ 225
Query: 100 RIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVM 136
V N Q++ P QFDV++ N++G+I
Sbjct: 226 ----VDNAAMQLILKPSQFDVILTTNMFGDILSDESA 258
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 414
Score = 44.1 bits (103), Expect = 3e-06
Identities = 15/111 (13%), Positives = 28/111 (25%), Gaps = 29/111 (26%)
Query: 39 LSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTI 98
LS + K I+K DG F + +E+
Sbjct: 201 LSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQY------------------------- 235
Query: 99 RRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLAS 149
++I D MV + + N G++ + +
Sbjct: 236 ----KSQFEAQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVA 282
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Salmonella typhimurium [TaxId: 90371]}
Length = 363
Score = 43.2 bits (101), Expect = 6e-06
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 23/97 (23%)
Query: 39 LSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTI 98
R+KVT++ KAN+++ L+ ++AK YP M
Sbjct: 184 RKRRRKVTSIDKANVLQ-SSILWREIVNDVAKTYPDVELAHMYIDNA------------- 229
Query: 99 RRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMV 135
T Q++ +P QFDV++ NL+G+I
Sbjct: 230 ---------TMQLIKDPSQFDVLLCSNLFGDILSDEC 257
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH
{Bacillus coagulans [TaxId: 1398]}
Length = 356
Score = 40.1 bits (93), Expect = 6e-05
Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 24/121 (19%)
Query: 15 CDKVSLRYEETIDPCPRFSYVQDLLSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPV 74
E I+ ++ RKK+ +V KAN+++ ++ +E AK YP
Sbjct: 156 VVDTLAYTREEIERIIEKAFQLAQ-IRRKKLASVDKANVLE-SSRMWREIAEETAKKYP- 212
Query: 75 WTNRKMITGFIWTTRDINVFIWTIRRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVM 134
D+ + + Q+++NP QFDV+V N++G+I
Sbjct: 213 ---------------DVELSHMLVDSTS------MQLIANPGQFDVIVTENMFGDILSDE 251
Query: 135 V 135
Sbjct: 252 A 252
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Thiobacillus ferrooxidans [TaxId: 920]}
Length = 357
Score = 37.4 bits (86), Expect = 4e-04
Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 23/95 (24%)
Query: 41 NRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRR 100
RK++ +V KAN+++ L+ E+A+ YP + ++
Sbjct: 181 RRKQLCSVDKANVLETTR-LWREVVTEVARDYP---------DVRLSHMYVDNA------ 224
Query: 101 IITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMV 135
Q++ P QFDV++ N++G+I
Sbjct: 225 -------AMQLIRAPAQFDVLLTGNMFGDILSDEA 252
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Thermus thermophilus [TaxId: 274]}
Length = 345
Score = 36.3 bits (83), Expect = 0.001
Identities = 23/139 (16%), Positives = 47/139 (33%), Gaps = 38/139 (27%)
Query: 39 LSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTI 98
RK V +V KAN++++G+ + +E+ + YP +
Sbjct: 174 RKRRKHVVSVDKANVLEVGEFWR-KTVEEVGRGYPDVALEHQYVDAM------------- 219
Query: 99 RRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIVDNLASDSVISRTGS 158
+V +P +FDV+V N++G+I + SV+ +
Sbjct: 220 ---------AMHLVRSPARFDVVVTGNIFGDILSDLA---------------SVLPGSLG 255
Query: 159 CQQSCDMVSEFACSKFIMH 177
S + + +
Sbjct: 256 LLPSASLGRGTPVFEPVHG 274
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 337
Score = 34.0 bits (77), Expect = 0.006
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 22/96 (22%)
Query: 41 NRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTIRR 100
RK +T VHK N++ GL+L + E+ + YP
Sbjct: 170 RRKHLTLVHKTNVLTFAGGLWLRTVDEVGECYPDVEVAYQHVD----------------- 212
Query: 101 IITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVM 136
T ++++P +FDV+V NL+G+I +
Sbjct: 213 -----AATIHMITDPGRFDVIVTDNLFGDIITDLAA 243
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 336
Score = 30.6 bits (68), Expect = 0.079
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 25/106 (23%)
Query: 39 LSNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPVWTNRKMITGFIWTTRDINVFIWTI 98
L RKKVT VHKAN+M++ DGLF +C+ + K ++ +
Sbjct: 158 LRRRKKVTCVHKANVMRITDGLFAEACRSVLKGKVEYSEMYV------------------ 199
Query: 99 RRIITVFNWTRQIVSNPHQFDVMVMPNLYGNIFDVMVMPNLYGNIV 144
+V NP FDV+V N+YG+I + G++
Sbjct: 200 ------DAAAANLVRNPQMFDVIVTENVYGDILSDEA-SQIAGSLG 238
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.139 0.440
Gapped
Lambda K H
0.267 0.0498 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 691,799
Number of extensions: 30953
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 12
Length of query: 178
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 98
Effective length of database: 1,309,196
Effective search space: 128301208
Effective search space used: 128301208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.6 bits)