BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3674
(306 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
Cellular Modulator Of Immune Recognition Protein
Length = 80
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 90 VCRICHGSHENLKAL---CECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRTLKR 146
+CRICH ++ L C C G++ VH CL QW+ S CCE+C +++ + L
Sbjct: 17 ICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSG 76
Query: 147 P 147
P
Sbjct: 77 P 77
>pdb|1VYX|A Chain A, Solution Structure Of The Kshv K3 N-Terminal Domain
Length = 60
Score = 46.2 bits (108), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 85 DENAPVCRICHGS--HENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKY 138
DE+ PVC IC+ +E +A C C G + VH CL+ WL+ S + C+IC Y
Sbjct: 3 DEDVPVCWICNEELGNERFRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 230 AMIRKDSCPISITPIYEGKYFKNMRTQVLSQLVWYY 265
A IRK + + ITP++ G KN Q+L V Y
Sbjct: 244 AAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDY 279
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 230 AMIRKDSCPISITPIYEGKYFKNMRTQVLSQLVWYY 265
A IRK + + ITP++ G KN Q+L V Y
Sbjct: 244 AAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDY 279
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 230 AMIRKDSCPISITPIYEGKYFKNMRTQVLSQLVWYY 265
A IRK + + ITP++ G KN Q+L V Y
Sbjct: 244 AAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDY 279
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 230 AMIRKDSCPISITPIYEGKYFKNMRTQVLSQLVWYY 265
A IRK + + ITP++ G KN Q+L V Y
Sbjct: 244 AAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDY 279
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 230 AMIRKDSCPISITPIYEGKYFKNMRTQVLSQLVWYY 265
A IRK + + ITP++ G KN Q+L V Y
Sbjct: 244 AAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDY 279
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 230 AMIRKDSCPISITPIYEGKYFKNMRTQVLSQLVWYY 265
A IRK + + ITP++ G KN Q+L V Y
Sbjct: 244 AAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDY 279
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 230 AMIRKDSCPISITPIYEGKYFKNMRTQVLSQLVWYY 265
A IRK + + ITP++ G KN Q+L V Y
Sbjct: 244 AAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDY 279
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 230 AMIRKDSCPISITPIYEGKYFKNMRTQVLSQLVWYY 265
A IRK + + ITP++ G KN Q+L V Y
Sbjct: 244 AAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDY 279
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 230 AMIRKDSCPISITPIYEGKYFKNMRTQVLSQLVWYY 265
A IRK + + ITP++ G KN Q+L V Y
Sbjct: 211 AAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDY 246
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,344,175
Number of Sequences: 62578
Number of extensions: 369923
Number of successful extensions: 1006
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 985
Number of HSP's gapped (non-prelim): 21
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)