BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3674
(306 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q68FA7|MARH3_XENTR E3 ubiquitin-protein ligase MARCH3 OS=Xenopus tropicalis GN=march3
PE=2 SV=1
Length = 251
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Query: 71 QLLEGEIDEIGSEHDENAPVCRICH--GSHENLKALCECRGTMGLVHAECLTQWLSESGR 128
QLL + + ++ + P+CRICH + E+L + CEC GT+G +H CL WLS S
Sbjct: 49 QLLSTVVRTLTTQSFNDRPMCRICHEGSTQEDLLSPCECTGTLGTIHRSCLEHWLSSSNT 108
Query: 129 SCCEICNFKYKFKRTLKRPLWETMAGWLYKVV---ENSQVFIILSWLMAITPIVLLAAAL 185
S CE+C+F++ +R RPL E WL E +F + + ITP+ ++ L
Sbjct: 109 SYCELCHFRFSVERK-PRPLVE----WLRNPGPQHEKRTLFGDMVCFLFITPLATISGWL 163
Query: 186 TNNFPFNH 193
+H
Sbjct: 164 CLRGAVDH 171
>sp|Q86UD3|MARH3_HUMAN E3 ubiquitin-protein ligase MARCH3 OS=Homo sapiens GN=MARCH3 PE=2
SV=1
Length = 253
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 11/161 (6%)
Query: 39 SSSASIVSDLDAEEHSQQDDADFFNSICNDILQLLEGEIDEIGSEHDEN-APVCRICH-- 95
SS+A +V ++ + + QLL + + ++ N P+CRICH
Sbjct: 18 SSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLATQSPFNDRPMCRICHEG 77
Query: 96 GSHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRTLKRPLWETMAGW 155
S E+L + CEC GT+G +H CL WLS S S CE+C+F++ +R RPL E W
Sbjct: 78 SSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAVERK-PRPLVE----W 132
Query: 156 LYKVV---ENSQVFIILSWLMAITPIVLLAAALTNNFPFNH 193
L E +F + + ITP+ ++ L +H
Sbjct: 133 LRNPGPQHEKRTLFGDMVCFLFITPLATISGWLCLRGAVDH 173
>sp|Q28EX7|MARH2_XENTR E3 ubiquitin-protein ligase MARCH2 OS=Xenopus tropicalis GN=march2
PE=2 SV=1
Length = 246
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 12/143 (8%)
Query: 48 LDAEEHSQQDDADFFNSICNDILQLLEGEIDEIGSEHDENAPVCRICH--GSHENLKALC 105
L + E S + + QLL I +G++ D P+CRICH G+ E L + C
Sbjct: 23 LKSLEESDLGRPQYVTQVTAKDGQLLSTVIKALGTQSD--GPICRICHEGGNGERLLSPC 80
Query: 106 ECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRTLKRPLWETMAGWLYKVV---EN 162
+C GT+G VH CL +WLS S S CE+C+ ++ +R RP+ E WL E
Sbjct: 81 DCTGTLGTVHKTCLEKWLSSSNTSYCELCHTEFAVERR-PRPVTE----WLKDPGPRNEK 135
Query: 163 SQVFIILSWLMAITPIVLLAAAL 185
+F + + ITP+ ++ L
Sbjct: 136 RTLFCDMVCFLFITPLAAISGWL 158
>sp|Q5PQ35|MARH2_XENLA E3 ubiquitin-protein ligase MARCH2 OS=Xenopus laevis GN=march2 PE=2
SV=1
Length = 246
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 12/143 (8%)
Query: 48 LDAEEHSQQDDADFFNSICNDILQLLEGEIDEIGSEHDENAPVCRICH--GSHENLKALC 105
L + E S + + QLL I +G++ D P+CRICH G+ E L + C
Sbjct: 23 LKSLEESDLGRPQYVTQVTAKDGQLLSTVIKALGTQSD--GPICRICHEGGNGERLLSPC 80
Query: 106 ECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRTLKRPLWETMAGWLYKVV---EN 162
+C GT+G VH CL +WLS S S CE+C+ ++ +R RP+ E WL E
Sbjct: 81 DCTGTLGTVHKTCLEKWLSSSNTSYCELCHTEFAVERR-PRPVTE----WLKDPGPRHEK 135
Query: 163 SQVFIILSWLMAITPIVLLAAAL 185
+F + + ITP+ ++ L
Sbjct: 136 RTLFCDMVCFLFITPLAAISGWL 158
>sp|Q5XIE5|MARH3_RAT E3 ubiquitin-protein ligase MARCH3 OS=Rattus norvegicus GN=March3
PE=1 SV=1
Length = 253
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 11/161 (6%)
Query: 39 SSSASIVSDLDAEEHSQQDDADFFNSICNDILQLLEGEIDEIGSEHDEN-APVCRICH-- 95
SS+A +V ++ + + QLL + + ++ N P+CRICH
Sbjct: 18 SSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLATQSPFNDRPMCRICHEG 77
Query: 96 GSHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRTLKRPLWETMAGW 155
S E+L + CEC GT+G +H CL WLS S S CE+C+F++ +R RPL E W
Sbjct: 78 SSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAVERK-PRPLVE----W 132
Query: 156 LYKVV---ENSQVFIILSWLMAITPIVLLAAALTNNFPFNH 193
L E +F + + ITP+ ++ L +H
Sbjct: 133 LRNPGPQHEKRTLFGDMVCFLFITPLATISGWLCLRGAVDH 173
>sp|Q8BRX9|MARH3_MOUSE E3 ubiquitin-protein ligase MARCH3 OS=Mus musculus GN=March3 PE=2
SV=1
Length = 218
Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 11/161 (6%)
Query: 39 SSSASIVSDLDAEEHSQQDDADFFNSICNDILQLLEGEIDEIGSEHDEN-APVCRICH-- 95
SS+A +V ++ + + QLL + + ++ N P+CRICH
Sbjct: 18 SSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLATQSPFNDRPMCRICHEG 77
Query: 96 GSHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRTLKRPLWETMAGW 155
S E+L + CEC GT+G +H CL WLS S S CE+C+F++ +R RPL E W
Sbjct: 78 SSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAVERK-PRPLVE----W 132
Query: 156 LYKVV---ENSQVFIILSWLMAITPIVLLAAALTNNFPFNH 193
L E +F + + ITP+ ++ L +H
Sbjct: 133 LRNPGPQHEKRTLFGDMVCFLFITPLATISGWLCLRGAVDH 173
>sp|A0JN69|MARH3_BOVIN E3 ubiquitin-protein ligase MARCH3 OS=Bos taurus GN=MARCH3 PE=2
SV=1
Length = 253
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 66/129 (51%), Gaps = 11/129 (8%)
Query: 71 QLLEGEIDEIGSEHDEN-APVCRICH--GSHENLKALCECRGTMGLVHAECLTQWLSESG 127
QLL + + ++ N P+CRICH S E+L + CEC GT+G +H CL WLS S
Sbjct: 50 QLLSTVVRTLATQSPFNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSN 109
Query: 128 RSCCEICNFKYKFKRTLKRPLWETMAGWLYKVV---ENSQVFIILSWLMAITPIVLLAAA 184
S CE+C+F++ +R RPL E WL E +F + + ITP+ ++
Sbjct: 110 TSYCELCHFRFAVERK-PRPLVE----WLRNPGPQHEKRTLFGDMVCFLFITPLATISGW 164
Query: 185 LTNNFPFNH 193
L +H
Sbjct: 165 LCLRGAVDH 173
>sp|Q0IH10|MARH3_XENLA E3 ubiquitin-protein ligase MARCH3 OS=Xenopus laevis GN=march3 PE=2
SV=1
Length = 252
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 11/121 (9%)
Query: 71 QLLEGEIDEIGSEHDEN-APVCRICH--GSHENLKALCECRGTMGLVHAECLTQWLSESG 127
QLL + + ++ N P+CRICH + E+L + CEC GT+G +H CL WLS S
Sbjct: 49 QLLSTVVRTLTTQSSFNDHPMCRICHEGSTQEDLLSPCECTGTLGTIHRSCLEHWLSSSN 108
Query: 128 RSCCEICNFKYKFKRTLKRPLWETMAGWLYKVV---ENSQVFIILSWLMAITPIVLLAAA 184
S CE+C+F++ +R RPL E WL E +F + + ITP+ ++
Sbjct: 109 TSYCELCHFRFSVERK-PRPLVE----WLRNPGPQHEKRTLFGDMVCFLFITPLATISGW 163
Query: 185 L 185
L
Sbjct: 164 L 164
>sp|Q1LVZ2|MARH2_DANRE E3 ubiquitin-protein ligase MARCH2 OS=Danio rerio GN=march2 PE=2
SV=1
Length = 249
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 52 EHSQQDDADFFNSICNDILQLLEGEIDEIGSEHDENAPVCRICHGSH-----ENLKALCE 106
E + A + + +LL I +G++ D P+CRICH E L + C+
Sbjct: 27 EEADNRRAQYVTQVTAKDGRLLSTVIKALGTQSDR--PICRICHEGQDVCNSEGLLSPCD 84
Query: 107 CRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRTLKRPLWETMAGWLYKVV---ENS 163
C GT+G VH CL +WLS S S CE+C+ ++ +R RPL E WL E
Sbjct: 85 CTGTLGTVHKSCLEKWLSSSNTSYCELCHTEFTIERR-PRPLTE----WLRDPGPRNEKR 139
Query: 164 QVFIILSWLMAITPIVLLAAAL 185
+F + + ITP+ ++ L
Sbjct: 140 TLFCDMVCFLFITPLAAISGWL 161
>sp|Q99M02|MARH2_MOUSE E3 ubiquitin-protein ligase MARCH2 OS=Mus musculus GN=March2 PE=2
SV=1
Length = 246
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 18/125 (14%)
Query: 71 QLLEGEIDEIGSEHDENAPVCRICH--GSHENLKALCECRGTMGLVHAECLTQWLSESGR 128
+LL I + S+ D P CRICH + ENL + C C GT+G VH CL +WLS S
Sbjct: 46 RLLSTVIRALDSQSD--CPFCRICHEGANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNT 103
Query: 129 SCCEICNFKYKFKRTLKRPLWETMAGWLYKVVENSQ---------VFIILSWLMAITPIV 179
S CE+C+ ++ ++ RPL E WL ++ F+ ++ L AI+ +
Sbjct: 104 SYCELCHTEFAVEKR-PRPLTE----WLKDPGPRTEKRTLCCDMVCFVFITPLAAISGWL 158
Query: 180 LLAAA 184
L A
Sbjct: 159 CLRGA 163
>sp|Q5I0I2|MARH2_RAT E3 ubiquitin-protein ligase MARCH2 OS=Rattus norvegicus GN=March2
PE=1 SV=1
Length = 246
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 16/109 (14%)
Query: 87 NAPVCRICH--GSHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRTL 144
+ P CRICH + ENL + C C GT+G VH CL +WLS S S CE+C+ ++ ++
Sbjct: 60 DCPFCRICHEGANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKR- 118
Query: 145 KRPLWETMAGWLYKVVENSQ---------VFIILSWLMAITPIVLLAAA 184
RPL E WL ++ F+ ++ L AI+ + L A
Sbjct: 119 PRPLTE----WLKDPGPRTEKRTLCCDMVCFVFITPLAAISGWLCLRGA 163
>sp|Q6NZQ8|MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1 OS=Mus musculus GN=March1 PE=1
SV=2
Length = 289
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 79/178 (44%), Gaps = 29/178 (16%)
Query: 9 ISKTTRHIETVVNGMDDDKNKLVNRKEHKKSSS-ASIVSDLDAEEHSQQDDADFFNSICN 67
I TTR ET + D + +N K +S+S +S +S + + S+C
Sbjct: 15 IPNTTRTPETSGDVADASQTSTLNEKSPGRSASRSSNISKASSPTTGTAPRSQSRLSVC- 73
Query: 68 DILQLLEGEIDEIGSEHDENAPVCRICH--GSHEN-LKALCECRGTMGLVHAECLTQWLS 124
S D +CRICH G E+ L C C GT+ VH CL QW+
Sbjct: 74 -------------PSTQD----ICRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIK 116
Query: 125 ESGRSCCEICNFKYKFKRTLKRPL--WETMAGWLYKVVENSQVFIILSW-LMAITPIV 179
S CCE+C + + + LK PL WE + E ++F +++ ++A+T +V
Sbjct: 117 SSDTRCCELCKYDFIMETKLK-PLRKWEKLQ---MTTSERRKIFCSVTFHVIAVTCVV 170
>sp|Q9P0N8|MARH2_HUMAN E3 ubiquitin-protein ligase MARCH2 OS=Homo sapiens GN=MARCH2 PE=1
SV=1
Length = 246
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 12/122 (9%)
Query: 87 NAPVCRICH--GSHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRTL 144
+ P CRICH + E L + C C GT+G VH CL +WLS S S CE+C+ ++ ++
Sbjct: 60 DGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKR- 118
Query: 145 KRPLWETMAGWLYKV---VENSQVFIILSWLMAITPIVLLAAALTNNFPFNHNDRKTHQQ 201
RPL E WL E + + + ITP+ ++ L +H + H Q
Sbjct: 119 PRPLTE----WLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDH--LRLHSQ 172
Query: 202 LQ 203
L+
Sbjct: 173 LE 174
>sp|Q32L65|MARH2_BOVIN E3 ubiquitin-protein ligase MARCH2 OS=Bos taurus GN=MARCH2 PE=2
SV=1
Length = 245
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 83 EHDENAPVCRICH--GSHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKF 140
E + P CRICH + E+L + C C GT+G VH CL +WLS S S CE+C+ ++
Sbjct: 56 ETPSDGPFCRICHEGANGESLLSPCGCSGTLGAVHKSCLERWLSSSNTSYCELCHTEFAV 115
Query: 141 KR 142
++
Sbjct: 116 EK 117
>sp|A6NNE9|MARHB_HUMAN E3 ubiquitin-protein ligase MARCH11 OS=Homo sapiens GN=MARCH11 PE=2
SV=3
Length = 402
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 6/162 (3%)
Query: 24 DDDKNKLVNRKEHKKSSSASIVSDLDAEEHSQQDDADFFNSICNDILQLLEGEIDEIGSE 83
+ +L K S E D S+C+ G G +
Sbjct: 103 GEGPRRLPEAAAAKGGPGESEAGAGGERERRGAGDQPETRSVCSSRSSSSGGGDQRAGHQ 162
Query: 84 HDENAPVCRICHGSHENLKAL--CECRGTMGLVHAECLTQWLSESGRSCCEICNFKYK-F 140
H + P+C+IC E + L C C G++ H CL +W+SE G CE+C ++Y
Sbjct: 163 HQHHQPICKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVI 222
Query: 141 KRTLKRPL-WETMAGWLYKVVENSQVFIILSWLMAITPIVLL 181
+K+P W++++ L + V+ + +IL L I + L
Sbjct: 223 AIKMKQPCQWQSISITLVEKVQ--MIAVILGSLFLIASVTWL 262
>sp|Q9DBD2|MARH8_MOUSE E3 ubiquitin-protein ligase MARCH8 OS=Mus musculus GN=March8 PE=2
SV=1
Length = 286
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 75/182 (41%), Gaps = 39/182 (21%)
Query: 87 NAPVCRICHGSHENLKAL---CECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRT 143
N +CRICH ++ L C C G++ VH CL QW+ S CCE+C +++ +
Sbjct: 72 NQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETK 131
Query: 144 LKRPL--WE-----------------------TMAGW-LYKVVENS-------QVFIILS 170
LK PL WE T W LY +++ + QV IL
Sbjct: 132 LK-PLRKWEKLQMTASERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQVTGILE 190
Query: 171 WLMAITPIVLLAAALTNNFPFNHNDRKTHQQLQCGFDVRYAMIRKDSCP-ISITPIYEGY 229
W T +V++A T F + K + QL +I +CP S I+E
Sbjct: 191 WPF-WTKLVVVAIGFTGGLLFMYVQCKVYLQLWKRLKAYNRVIYVQNCPETSKKNIFEKS 249
Query: 230 AM 231
A+
Sbjct: 250 AL 251
>sp|Q8TCQ1|MARH1_HUMAN E3 ubiquitin-protein ligase MARCH1 OS=Homo sapiens GN=MARCH1 PE=1
SV=1
Length = 289
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 10/96 (10%)
Query: 90 VCRICH--GSHEN-LKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRTLKR 146
+CRICH G E+ L C C GT+ VH CL QW+ S CCE+C + + + LK
Sbjct: 79 ICRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELCKYDFIMETKLK- 137
Query: 147 PL--WETMAGWLYKVVENSQVFIILSW-LMAITPIV 179
PL WE + E ++F +++ ++AIT +V
Sbjct: 138 PLRKWEKLQ---MTTSERRKIFCSVTFHVIAITCVV 170
>sp|Q86YJ5|MARH9_HUMAN E3 ubiquitin-protein ligase MARCH9 OS=Homo sapiens GN=MARCH9 PE=1
SV=2
Length = 346
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 87 NAPVCRICHGSHEN--LKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYK-FKRT 143
P CRIC E L + C C G++ H CL +W+SE G CE+C FKY+ +
Sbjct: 106 RTPQCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAIS 165
Query: 144 LKRPL-WETMAGWLYKVVENSQV-FIILSWLMAITPIV-LLAAALTNNFPFNHND 195
K PL W+ ++ V+E Q+ I+L L + I L+ ++L+ + + D
Sbjct: 166 TKNPLQWQAIS---LTVIEKVQIAAIVLGSLFLVASISWLIWSSLSPSAKWQRQD 217
>sp|Q3TZ87|MARH9_MOUSE E3 ubiquitin-protein ligase MARCH9 OS=Mus musculus GN=March9 PE=2
SV=1
Length = 348
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 87 NAPVCRICHGSHEN--LKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYK-FKRT 143
P CRIC E L + C C G++ H CL +W+SE G CE+C FKY+ +
Sbjct: 106 RTPQCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAIS 165
Query: 144 LKRPL-WETMAGWLYKVVENSQV-FIILSWLMAITPIV-LLAAALTNNFPFNHND 195
K PL W+ ++ V+E Q+ I+L L + I L+ ++L+ + + D
Sbjct: 166 TKNPLQWQAIS---LTVIEKVQIAAIVLGSLFLVASISWLIWSSLSPSAKWQRQD 217
>sp|Q0VD59|MARH8_BOVIN E3 ubiquitin-protein ligase MARCH8 OS=Bos taurus GN=MARCH8 PE=2
SV=1
Length = 289
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 87 NAPVCRICHGSHENLKAL---CECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRT 143
N +CRICH ++ L C C G++ VH CL QW+ S CCE+C +++ +
Sbjct: 74 NQDICRICHCEGDDESPLITPCRCTGSLHFVHQTCLQQWIKSSDTRCCELCKYEFIMETK 133
Query: 144 LKRPL--WETM 152
LK PL WE +
Sbjct: 134 LK-PLRKWEKL 143
>sp|Q28IK8|MARH8_XENTR E3 ubiquitin-protein ligase MARCH8 OS=Xenopus tropicalis GN=march8
PE=2 SV=1
Length = 264
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 90 VCRICHGSHENLKAL---CECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRTLKR 146
+CRICH ++ L C C G++ VH CL QW+ S CCE+C F++ + LK
Sbjct: 52 ICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKFEFIMETKLK- 110
Query: 147 PL--WETM 152
PL WE +
Sbjct: 111 PLRKWEKL 118
>sp|Q5XH39|MARH8_XENLA E3 ubiquitin-protein ligase MARCH8 OS=Xenopus laevis GN=march8 PE=2
SV=2
Length = 264
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 90 VCRICHGSHENLKAL---CECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRTLKR 146
+CRICH ++ L C C G++ VH CL QW+ S CCE+C F++ + LK
Sbjct: 52 ICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKFEFIMETKLK- 110
Query: 147 PL--WETM 152
PL WE +
Sbjct: 111 PLRKWEKL 118
>sp|Q5T0T0|MARH8_HUMAN E3 ubiquitin-protein ligase MARCH8 OS=Homo sapiens GN=MARCH8 PE=1
SV=1
Length = 291
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 90 VCRICHGSHENLKAL---CECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRTLKR 146
+CRICH ++ L C C G++ VH CL QW+ S CCE+C +++ + LK
Sbjct: 79 ICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLK- 137
Query: 147 PL--WETM 152
PL WE +
Sbjct: 138 PLRKWEKL 145
>sp|Q0P496|MARH4_DANRE E3 ubiquitin-protein ligase MARCH4 OS=Danio rerio GN=march4 PE=2
SV=1
Length = 421
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 17/100 (17%)
Query: 88 APVCRICHGSHEN--LKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYK-FKRTL 144
P+CRIC E L + C C G++ H CL +W+SE G CE+C +KY+ +
Sbjct: 140 TPLCRICFQGPEQGELLSPCRCSGSVRCTHEPCLIKWISERGSWSCELCYYKYQVIAIST 199
Query: 145 KRPL-WETMAGWLYKVVENSQV--------FII--LSWLM 173
K PL W+ ++ V+E Q+ F+I +SWL+
Sbjct: 200 KNPLQWQAIS---LTVIEKVQIAAAVLGSLFLIASISWLV 236
>sp|Q8CBH7|MARHB_MOUSE E3 ubiquitin-protein ligase MARCH11 OS=Mus musculus GN=March11 PE=2
SV=2
Length = 400
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 83 EHDENAPVCRICHGSHENLKAL--CECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKF 140
+H + P+C+IC E + L C C G++ H CL +W+SE G CE+C ++Y
Sbjct: 160 QHQHHQPICKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHV 219
Query: 141 KR-TLKRPL-WETMAGWLYKVVENSQVFIILSWLMAITPIVLL 181
+K+P W++++ L + V+ + +IL L I + L
Sbjct: 220 TAIKMKQPCQWQSISITLVEKVQ--MIAVILGSLFLIASVTWL 260
>sp|A6P320|MARHB_RAT E3 ubiquitin-protein ligase MARCH11 OS=Rattus norvegicus GN=March11
PE=1 SV=1
Length = 398
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 83 EHDENAPVCRICHGSHENLKAL--CECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKF 140
+H + P+C+IC E + L C C G++ H CL +W+SE G CE+C ++Y
Sbjct: 158 QHQHHQPICKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHV 217
Query: 141 KR-TLKRPL-WETMAGWLYKVVENSQVFIILSWLMAITPIVLL 181
+K+P W++++ L + V+ + +IL L I + L
Sbjct: 218 TAIKMKQPCQWQSISITLVEKVQ--MIAVILGSLFLIASVTWL 258
>sp|Q9P2E8|MARH4_HUMAN E3 ubiquitin-protein ligase MARCH4 OS=Homo sapiens GN=MARCH4 PE=2
SV=2
Length = 410
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 19/110 (17%)
Query: 80 IGSEHDEN--APVCRICHGSHEN--LKALCECRGTMGLVHAECLTQWLSESGRSCCEICN 135
+GS D P+CRIC E L + C C G++ H CL +W+SE G CE+C
Sbjct: 150 LGSSLDSGMRTPLCRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCY 209
Query: 136 FKYK-FKRTLKRPL-WETMAGWLYKVVENSQV--------FII--LSWLM 173
+KY + K PL W+ ++ V+E QV F+I +SWL+
Sbjct: 210 YKYHVIAISTKNPLQWQAIS---LTVIEKVQVAAAILGSLFLIASISWLI 256
>sp|Q80TE3|MARH4_MOUSE E3 ubiquitin-protein ligase MARCH4 OS=Mus musculus GN=March4 PE=2
SV=3
Length = 409
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 80 IGSEHDEN--APVCRICHGSHEN--LKALCECRGTMGLVHAECLTQWLSESGRSCCEICN 135
+GS D P+CRIC E L + C C G++ H CL +W+SE G CE+C
Sbjct: 149 LGSSLDSGMRTPLCRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCY 208
Query: 136 FKYK-FKRTLKRPL-WETMAGWLYKVVENSQV-FIILSWLMAITPIVLL 181
+KY + K PL W+ ++ V+E Q+ IL L I I L
Sbjct: 209 YKYHVIAISTKNPLQWQAIS---LTVIEKVQIAAAILGSLFLIASISWL 254
>sp|O60103|DOA10_SCHPO ERAD-associated E3 ubiquitin-protein ligase doa10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=doa10 PE=1 SV=1
Length = 1242
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 85 DENAPVCRICHGSHEN-LKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRT 143
DE VCR C G+ ++ L C+C G++ VH ECL +WL S ++ CE+C K++F +
Sbjct: 5 DEICRVCR-CEGAPDSPLFHPCKCTGSIRYVHQECLVEWLGHSKKTHCELCKAKFEFTKV 63
Query: 144 LKRPLWETM 152
+ T+
Sbjct: 64 YSESMPRTI 72
>sp|O41933|MIR1_MHV68 E3 ubiquitin-protein ligase MIR1 OS=Murid herpesvirus 4 GN=K3 PE=1
SV=1
Length = 201
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 11/101 (10%)
Query: 85 DENAPVCRICHGSHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRTL 144
D C ICH LK C C+G+ + H +CL WL S R C +C Y K
Sbjct: 2 DSTGEFCWICHQPEGPLKRFCGCKGSCAVSHQDCLRGWLETSRRQTCALCGTPYSMKWKT 61
Query: 145 KRPLWETMAGWLYKVVENSQVFIILSWLMAITPIVLLAAAL 185
K PL E W + E +L+ + A P+VL+ A+
Sbjct: 62 K-PLRE----WTWGEEE------VLAAMEACLPLVLIPLAV 91
>sp|P90495|MIR1_HHV8P E3 ubiquitin-protein ligase MIR1 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K3 PE=1 SV=1
Length = 333
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 85 DENAPVCRICHG--SHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKR 142
DE+ PVC IC+ +E +A C C G + VH CL+ WL+ S + C+IC Y R
Sbjct: 3 DEDVPVCWICNEELGNERFRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN-TR 60
Query: 143 TLKRPLWE 150
+ RPL E
Sbjct: 61 VVWRPLRE 68
>sp|Q6ZQ89|MARH6_MOUSE E3 ubiquitin-protein ligase MARCH6 OS=Mus musculus GN=March6 PE=2
SV=2
Length = 909
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 90 VCRICHGSHENLKAL---CECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKF 140
+CR+C K L C C G++ +H ECL QWL S + CE+C ++ F
Sbjct: 8 ICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAF 61
>sp|Q5R9W1|MARH6_PONAB E3 ubiquitin-protein ligase MARCH6 OS=Pongo abelii GN=MARCH6 PE=2
SV=1
Length = 910
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 90 VCRICHGSHENLKAL---CECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKF 140
+CR+C K L C C G++ +H ECL QWL S + CE+C ++ F
Sbjct: 8 ICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAF 61
>sp|O60337|MARH6_HUMAN E3 ubiquitin-protein ligase MARCH6 OS=Homo sapiens GN=MARCH6 PE=1
SV=2
Length = 910
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 90 VCRICHGSHENLKAL---CECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKF 140
+CR+C K L C C G++ +H ECL QWL S + CE+C ++ F
Sbjct: 8 ICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAF 61
>sp|P32225|LAP_SWPVK E3 ubiquitin-protein ligase LAP OS=Swinepox virus (strain Kasza)
GN=LAP PE=3 SV=1
Length = 155
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 89 PVCRICHGSHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRTLKRPL 148
PVC IC + K C C+ +VH EC+ +W+ S C++CN +Y ++++P
Sbjct: 3 PVCWICKDDYSIEKNYCNCKNEYKVVHDECMKKWIQYSRERSCKLCNKEYNI-ISVRKPF 61
Query: 149 WETMAGWLYKVVENSQVFIILSWLMAITPIVLLAAALTN 187
+ W++ + + + I+ + L T I+ L N
Sbjct: 62 ----SQWVFSIKDCKKSAILYATLFLCTFIISLVLTRIN 96
>sp|P27426|VIE1_BHV4D Probable E3 ubiquitin-protein ligase IE1 OS=Bovine herpesvirus 4
(strain DN-599) GN=IE1 PE=3 SV=1
Length = 285
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 82 SEHDENAPVCRICHGSHENLKA-LCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKF 140
S DE C IC +A C C G + H ECL W+S SG C+ C YK
Sbjct: 123 SSIDEEGKQCWICRDGESLPEARYCNCYGDLQYCHEECLKTWISMSGEKKCKFCQTPYKV 182
Query: 141 KR--TLKRPL 148
R +LKR L
Sbjct: 183 NRQLSLKRGL 192
>sp|Q91T40|LAP_LSDV E3 ubiquitin-protein ligase LAP OS=Lumpy skin disease virus
GN=LW010 PE=3 SV=1
Length = 162
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 85 DENAPVCRICHGSHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRTL 144
D C IC + C C+ +VH CL +W++ S + C+ICN KY K+
Sbjct: 5 DNTNTHCWICKDEYNVSTNFCNCKNEFKIVHKNCLEEWINFSHNTKCKICNGKYNIKKNK 64
Query: 145 KRPL 148
K L
Sbjct: 65 KSCL 68
>sp|P40318|DOA10_YEAST ERAD-associated E3 ubiquitin-protein ligase DOA10 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SSM4 PE=1
SV=1
Length = 1319
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
Query: 58 DADFFNSICNDILQLLEGEIDEIGSEHDE--NAPVCRICHGSHENLKAL---CECRGTMG 112
D+D S D L + E + + +D+ + CRIC G L C+CRG++
Sbjct: 4 DSDVNVSRLRDELHKVANEETDTATFNDDAPSGATCRICRGEATEDNPLFHPCKCRGSIK 63
Query: 113 LVHAECLTQW-------LSESGRSC-CEICNFKYKFK 141
+H CL +W +S+ G C+IC++ +FK
Sbjct: 64 YMHESCLLEWVASKNIDISKPGADVKCDICHYPIQFK 100
>sp|P90489|MIR2_HHV8P E3 ubiquitin-protein ligase MIR2 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K5 PE=1 SV=1
Length = 256
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 83 EHDENAPVCRICHGSHENLKA-LCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFK 141
E P+C IC N C C G + +VH +CL+ WL+ S + C++C Y+ +
Sbjct: 7 EEGVEGPICWICREEVGNEGIHPCACTGELDVVHPQCLSTWLTVSRNTACQMCRVIYRTR 66
>sp|Q9Q8T2|LAP_RFVKA E3 ubiquitin-protein ligase LAP OS=Rabbit fibroma virus (strain
Kasza) GN=s153R PE=3 SV=1
Length = 201
Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 91 CRICHGSHENLKALCECRGTMGLVHAECLTQWLSESG--RSCCEICNFKYKFKRTLKR 146
C IC S + ++ C+CRG +VH ECL +W++ C IC Y K+ K+
Sbjct: 17 CWICKESCDVVRNYCKCRGDNKIVHKECLEEWINTDTVKNKSCAICETPYNVKQQYKK 74
>sp|Q997C2|LAP_MYXVL E3 ubiquitin-protein ligase LAP OS=Myxoma virus (strain Lausanne)
GN=LAP PE=3 SV=1
Length = 206
Score = 39.7 bits (91), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 91 CRICHGSHENLKALCECRGTMGLVHAECLTQWLSES--GRSCCEICNFKYKFKRTLKR 146
C IC + + + C+CRG +VH ECL +W++ C IC Y KR K+
Sbjct: 23 CWICKEACDIVPNYCKCRGDNKIVHKECLEEWINTDVVKNKSCAICESPYNLKRRYKK 80
>sp|Q9DHV7|LAP_YLDV E3 ubiquitin-protein ligase LAP OS=Yaba-like disease virus GN=5L
PE=3 SV=1
Length = 156
Score = 37.7 bits (86), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 88 APVCRICHGSHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRT 143
+ +C IC+ + C C +VH +C+ W++ S + C +C KY K+T
Sbjct: 2 SDICWICNDVCDERNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKKT 57
>sp|Q5XI50|MARH7_RAT E3 ubiquitin-protein ligase MARCH7 OS=Rattus norvegicus GN=March7
PE=2 SV=1
Length = 692
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 12/63 (19%)
Query: 90 VCRICH---GSHENLK-ALCECRGTMGLVHAECLTQWLS---ESGRS-----CCEICNFK 137
+CRIC S NL C+C G++ VH EC+ +WL SG S CE+C K
Sbjct: 552 LCRICQMAAASSSNLLIEPCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELCKEK 611
Query: 138 YKF 140
+
Sbjct: 612 LQL 614
>sp|Q6TV02|LAP_YMTV5 E3 ubiquitin-protein ligase LAP OS=Yaba monkey tumor virus (strain
VR587) GN=LAP PE=3 SV=1
Length = 156
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 88 APVCRICHGSHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRT 143
+ +C IC+ + + C C +VH +C+ W++ S + C++C KY K++
Sbjct: 2 SNICWICNDTCDERNNFCICSEEYKIVHLKCMQSWINYSKKVECDLCKNKYNIKKS 57
>sp|Q9WV66|MARH7_MOUSE E3 ubiquitin-protein ligase MARCH7 OS=Mus musculus GN=March7 PE=2
SV=1
Length = 693
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 91 CRICH---GSHENLK-ALCECRGTMGLVHAECLTQWLS---ESGRS-----CCEICNFKY 138
CRIC S NL C+C G++ VH EC+ +WL SG S CE+C K
Sbjct: 554 CRICQMAAASSSNLLIEPCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELCKEKL 613
Query: 139 KF 140
+
Sbjct: 614 QL 615
>sp|Q5XIV2|MARHA_RAT Probable E3 ubiquitin-protein ligase MARCH10 OS=Rattus norvegicus
GN=March10 PE=2 SV=1
Length = 790
Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 90 VCRICHGSHEN-LKALCECRGTMGLVHAECLTQWLS---ESGR-----SCCEIC 134
+C+I GS N L C C G++ VH ECL +WL SG CE+C
Sbjct: 643 ICQIAGGSPANPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLSTVKTCEMC 696
>sp|Q8NA82|MARHA_HUMAN Probable E3 ubiquitin-protein ligase MARCH10 OS=Homo sapiens
GN=MARCH10 PE=2 SV=3
Length = 808
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 90 VCRICHGSHEN-LKALCECRGTMGLVHAECLTQWL 123
+C+I GS N L C C G++ VH ECL +WL
Sbjct: 661 ICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWL 695
>sp|Q6GM44|MARH5_XENLA E3 ubiquitin-protein ligase MARCH5 OS=Xenopus laevis GN=march5 PE=2
SV=1
Length = 283
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 11/59 (18%)
Query: 91 CRICHGSHENLKAL-----CECRGTMGLVHAECLTQWLSE------SGRSCCEICNFKY 138
C +C + E+ + C CRG+ VH CL +W+ E + R C CN +Y
Sbjct: 17 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEY 75
>sp|Q3KNM2|MARH5_MOUSE E3 ubiquitin-protein ligase MARCH5 OS=Mus musculus GN=March5 PE=2
SV=1
Length = 278
Score = 36.2 bits (82), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 11/59 (18%)
Query: 91 CRICHGSHENLKAL-----CECRGTMGLVHAECLTQWLSE------SGRSCCEICNFKY 138
C +C + E+ + C CRG+ VH CL +W+ E + R C CN +Y
Sbjct: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEY 72
>sp|Q9NX47|MARH5_HUMAN E3 ubiquitin-protein ligase MARCH5 OS=Homo sapiens GN=MARCH5 PE=1
SV=1
Length = 278
Score = 36.2 bits (82), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 11/59 (18%)
Query: 91 CRICHGSHENLKAL-----CECRGTMGLVHAECLTQWLSE------SGRSCCEICNFKY 138
C +C + E+ + C CRG+ VH CL +W+ E + R C CN +Y
Sbjct: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEY 72
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,117,735
Number of Sequences: 539616
Number of extensions: 4671309
Number of successful extensions: 13022
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 12947
Number of HSP's gapped (non-prelim): 88
length of query: 306
length of database: 191,569,459
effective HSP length: 117
effective length of query: 189
effective length of database: 128,434,387
effective search space: 24274099143
effective search space used: 24274099143
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)