Query psy3674
Match_columns 306
No_of_seqs 202 out of 744
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 22:43:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02862 5L protein; Provision 99.8 5E-21 1.1E-25 166.1 4.2 87 88-179 2-94 (156)
2 PHA02825 LAP/PHD finger-like p 99.8 1.9E-19 4.2E-24 157.9 7.0 84 84-172 4-89 (162)
3 smart00744 RINGv The RING-vari 99.6 1.3E-16 2.9E-21 115.0 2.8 46 90-135 1-49 (49)
4 PF12906 RINGv: RING-variant d 99.6 3E-16 6.5E-21 112.2 1.4 44 91-134 1-47 (47)
5 COG5183 SSM4 Protein involved 99.6 4E-15 8.6E-20 155.3 8.1 111 87-198 11-132 (1175)
6 KOG3053|consensus 99.5 7.1E-15 1.5E-19 137.7 4.9 113 79-199 11-136 (293)
7 KOG1609|consensus 99.5 6.3E-15 1.4E-19 135.2 -0.2 146 78-223 68-250 (323)
8 PF13639 zf-RING_2: Ring finge 96.2 0.0017 3.7E-08 44.8 0.8 40 89-135 1-44 (44)
9 PF12861 zf-Apc11: Anaphase-pr 95.7 0.0096 2.1E-07 48.3 3.1 50 88-141 21-84 (85)
10 PLN03208 E3 ubiquitin-protein 95.3 0.017 3.7E-07 53.0 3.8 52 85-141 15-81 (193)
11 PHA02929 N1R/p28-like protein; 95.3 0.021 4.6E-07 53.7 4.4 49 87-142 173-230 (238)
12 PF11793 FANCL_C: FANCL C-term 95.1 0.0079 1.7E-07 46.3 0.6 51 88-141 2-68 (70)
13 KOG4628|consensus 94.8 0.026 5.6E-07 55.9 3.4 46 89-140 230-279 (348)
14 PF12678 zf-rbx1: RING-H2 zinc 94.1 0.034 7.3E-07 42.9 2.0 22 112-135 52-73 (73)
15 PF13920 zf-C3HC4_3: Zinc fing 93.4 0.04 8.6E-07 39.0 1.3 45 88-139 2-48 (50)
16 COG5219 Uncharacterized conser 92.7 0.061 1.3E-06 59.4 2.1 51 87-140 1468-1524(1525)
17 smart00184 RING Ring finger. E 92.6 0.12 2.5E-06 32.4 2.5 38 91-134 1-39 (39)
18 smart00504 Ubox Modified RING 91.8 0.2 4.2E-06 36.1 3.2 47 90-143 3-50 (63)
19 cd00162 RING RING-finger (Real 91.5 0.2 4.4E-06 32.5 2.8 42 90-137 1-44 (45)
20 PF00097 zf-C3HC4: Zinc finger 90.5 0.19 4.2E-06 33.6 1.9 39 91-134 1-41 (41)
21 COG5243 HRD1 HRD ubiquitin lig 90.4 0.32 6.9E-06 49.2 4.1 49 86-141 285-347 (491)
22 COG5540 RING-finger-containing 90.4 0.23 5E-06 49.0 3.0 45 87-138 322-371 (374)
23 KOG0823|consensus 89.3 0.58 1.3E-05 44.2 4.7 52 85-141 44-97 (230)
24 PHA02926 zinc finger-like prot 88.7 0.51 1.1E-05 44.8 3.8 51 86-141 168-232 (242)
25 KOG0802|consensus 88.5 0.32 6.8E-06 50.1 2.6 45 87-138 290-340 (543)
26 KOG1493|consensus 86.9 0.26 5.7E-06 39.8 0.8 48 90-141 22-83 (84)
27 TIGR00599 rad18 DNA repair pro 84.6 0.85 1.8E-05 46.1 3.2 61 86-153 24-85 (397)
28 KOG1734|consensus 82.9 0.53 1.2E-05 45.9 1.0 81 86-182 222-317 (328)
29 PF13923 zf-C3HC4_2: Zinc fing 81.0 0.88 1.9E-05 30.6 1.3 37 91-134 1-39 (39)
30 KOG1785|consensus 80.5 0.69 1.5E-05 47.3 0.8 48 88-140 369-417 (563)
31 KOG0828|consensus 80.1 1.5 3.2E-05 46.0 3.0 49 84-138 567-633 (636)
32 PLN02436 cellulose synthase A 79.1 1.8 4E-05 48.6 3.6 53 84-140 32-90 (1094)
33 KOG0317|consensus 77.3 3 6.5E-05 40.7 4.1 53 81-140 232-285 (293)
34 KOG4265|consensus 77.3 2.5 5.4E-05 42.2 3.6 46 84-139 286-336 (349)
35 KOG0827|consensus 76.1 2 4.4E-05 43.8 2.6 45 88-135 4-52 (465)
36 PLN02189 cellulose synthase 73.8 2.1 4.5E-05 48.0 2.2 52 85-140 31-88 (1040)
37 COG5194 APC11 Component of SCF 66.1 5.6 0.00012 32.5 2.6 29 112-142 56-84 (88)
38 KOG0804|consensus 66.1 3 6.5E-05 43.1 1.3 46 85-139 172-222 (493)
39 KOG2930|consensus 63.4 6.7 0.00015 33.5 2.7 30 112-143 83-112 (114)
40 PF14570 zf-RING_4: RING/Ubox 55.4 9 0.0002 28.1 1.9 43 91-139 1-48 (48)
41 PF14634 zf-RING_5: zinc-RING 54.5 11 0.00023 26.0 2.1 39 91-136 2-44 (44)
42 KOG1645|consensus 51.1 12 0.00026 38.6 2.6 53 87-143 3-60 (463)
43 PF05883 Baculo_RING: Baculovi 50.3 8.4 0.00018 33.8 1.2 41 86-126 24-69 (134)
44 PF14004 DUF4227: Protein of u 50.2 54 0.0012 25.9 5.6 49 248-298 2-54 (71)
45 PLN02638 cellulose synthase A 47.2 20 0.00044 40.7 3.8 51 85-139 14-70 (1079)
46 PLN02195 cellulose synthase A 46.4 16 0.00035 41.1 2.9 49 87-139 5-59 (977)
47 PF05290 Baculo_IE-1: Baculovi 45.6 15 0.00032 32.5 2.0 55 87-142 79-135 (140)
48 PF10367 Vps39_2: Vacuolar sor 45.6 6 0.00013 30.9 -0.3 30 87-121 77-109 (109)
49 PLN02400 cellulose synthase 45.2 17 0.00037 41.3 2.9 52 85-140 33-90 (1085)
50 PF10272 Tmpp129: Putative tra 45.0 15 0.00034 36.8 2.3 36 103-141 307-353 (358)
51 PLN02915 cellulose synthase A 44.7 18 0.00038 41.0 2.9 58 79-140 6-69 (1044)
52 cd06494 p23_NUDCD2_like p23-li 41.1 21 0.00046 28.9 2.2 20 277-296 5-24 (93)
53 KOG4692|consensus 39.1 22 0.00047 36.4 2.3 49 85-140 419-468 (489)
54 COG5432 RAD18 RING-finger-cont 37.9 15 0.00032 36.7 0.9 52 87-145 24-76 (391)
55 PF08746 zf-RING-like: RING-li 36.1 19 0.00042 25.3 1.1 21 114-134 23-43 (43)
56 PF04564 U-box: U-box domain; 32.0 26 0.00057 26.6 1.3 47 90-142 6-53 (73)
57 PF14569 zf-UDP: Zinc-binding 30.6 45 0.00097 27.1 2.4 51 86-140 7-63 (80)
58 PF13894 zf-C2H2_4: C2H2-type 30.4 26 0.00055 19.8 0.8 12 130-141 2-13 (24)
59 PF07800 DUF1644: Protein of u 30.1 61 0.0013 29.5 3.4 37 88-126 2-49 (162)
60 PF11872 DUF3392: Protein of u 28.9 93 0.002 26.4 4.2 35 247-281 15-50 (106)
61 KOG0287|consensus 28.8 23 0.0005 36.0 0.6 53 89-148 24-77 (442)
62 PF15227 zf-C3HC4_4: zinc fing 28.2 27 0.0006 24.2 0.8 39 91-134 1-42 (42)
63 KOG4445|consensus 25.8 63 0.0014 32.4 3.0 50 87-141 114-188 (368)
64 PF10571 UPF0547: Uncharacteri 24.8 33 0.00071 22.0 0.6 13 127-139 13-25 (26)
65 COG5236 Uncharacterized conser 24.2 82 0.0018 32.3 3.5 55 81-140 54-109 (493)
66 KOG3899|consensus 22.5 56 0.0012 32.7 1.9 36 105-143 323-369 (381)
67 KOG0956|consensus 20.2 51 0.0011 36.3 1.3 53 90-145 7-80 (900)
No 1
>PHA02862 5L protein; Provisional
Probab=99.82 E-value=5e-21 Score=166.05 Aligned_cols=87 Identities=21% Similarity=0.601 Sum_probs=74.0
Q ss_pred CCeeeEeccCCCCccccccccCCCccccHHHHHHHHHhcCCcccCCCCceeeeeeeccchhhhhhhhhhh------cccc
Q psy3674 88 APVCRICHGSHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRTLKRPLWETMAGWLY------KVVE 161 (306)
Q Consensus 88 ~~~CRIC~ge~~~LIsPC~CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y~~~~~~k~~i~~si~~W~~------~vl~ 161 (306)
.++||||++++++.++||+|+||+++||++||++|++.+++..||+|+++|.+++.+| ++..|.- .+++
T Consensus 2 ~diCWIC~~~~~e~~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~yK-----pf~kW~~~f~d~k~~l~ 76 (156)
T PHA02862 2 SDICWICNDVCDERNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKKTYV-----SFKKWNWCFNDKKTTLS 76 (156)
T ss_pred CCEEEEecCcCCCCcccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEEccc-----cHHHhhccCCCCCCchh
Confidence 5799999976666689999999999999999999999999999999999999988765 7777852 3466
Q ss_pred hhhhhhhhHHHHHHHHHH
Q psy3674 162 NSQVFIILSWLMAITPIV 179 (306)
Q Consensus 162 ~R~~~~dl~~llf~TpLv 179 (306)
++..+++.++|+|+||-.
T Consensus 77 ki~fI~~~v~fi~it~s~ 94 (156)
T PHA02862 77 KIFFILFALVFIFLTISL 94 (156)
T ss_pred eeeeHhhhhhheeeeccc
Confidence 777888888888888743
No 2
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=99.78 E-value=1.9e-19 Score=157.95 Aligned_cols=84 Identities=27% Similarity=0.620 Sum_probs=70.6
Q ss_pred CCCCCCeeeEeccCCCCccccccccCCCccccHHHHHHHHHhcCCcccCCCCceeeeeeeccchhhhhhhhhhhccc--c
Q psy3674 84 HDENAPVCRICHGSHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRTLKRPLWETMAGWLYKVV--E 161 (306)
Q Consensus 84 ~s~~~~~CRIC~ge~~~LIsPC~CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y~~~~~~k~~i~~si~~W~~~vl--~ 161 (306)
.+..++.||||+++++++.+||+|+||+++||++||++|+..+++..||+|+++|.+++.+| ++..|.-... .
T Consensus 4 ~s~~~~~CRIC~~~~~~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~~~k-----pl~~W~~~~~dc~ 78 (162)
T PHA02825 4 VSLMDKCCWICKDEYDVVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKKNYK-----KCTKWRCSFRDCH 78 (162)
T ss_pred cCCCCCeeEecCCCCCCccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEEecC-----CCccccccCcchh
Confidence 35688999999976667889999999999999999999999999999999999999987665 7788866553 4
Q ss_pred hhhhhhhhHHH
Q psy3674 162 NSQVFIILSWL 172 (306)
Q Consensus 162 ~R~~~~dl~~l 172 (306)
++.++.+++++
T Consensus 79 ~~~l~~~llcl 89 (162)
T PHA02825 79 DSAIVNSLLCL 89 (162)
T ss_pred hHHHHHHHHHH
Confidence 55666666664
No 3
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=99.63 E-value=1.3e-16 Score=114.96 Aligned_cols=46 Identities=48% Similarity=1.229 Sum_probs=43.3
Q ss_pred eeeEecc---CCCCccccccccCCCccccHHHHHHHHHhcCCcccCCCC
Q psy3674 90 VCRICHG---SHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICN 135 (306)
Q Consensus 90 ~CRIC~g---e~~~LIsPC~CkGSl~~VH~~CL~~Wl~~s~~~~CELCk 135 (306)
+||||++ ++++|++||.|+|+++|||++||++|+..+++..||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5999995 578999999999999999999999999999999999996
No 4
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=99.59 E-value=3e-16 Score=112.24 Aligned_cols=44 Identities=50% Similarity=1.161 Sum_probs=35.9
Q ss_pred eeEecc---CCCCccccccccCCCccccHHHHHHHHHhcCCcccCCC
Q psy3674 91 CRICHG---SHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEIC 134 (306)
Q Consensus 91 CRIC~g---e~~~LIsPC~CkGSl~~VH~~CL~~Wl~~s~~~~CELC 134 (306)
||||++ ++++|++||+|+||++|||++||++|+..++...||+|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 899993 34579999999999999999999999999999999998
No 5
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.57 E-value=4e-15 Score=155.25 Aligned_cols=111 Identities=25% Similarity=0.552 Sum_probs=76.6
Q ss_pred CCCeeeEecc---CCCCccccccccCCCccccHHHHHHHHHhcCCcccCCCCceeeeeeeccchhhhhh--hhhhhccc-
Q psy3674 87 NAPVCRICHG---SHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRTLKRPLWETM--AGWLYKVV- 160 (306)
Q Consensus 87 ~~~~CRIC~g---e~~~LIsPC~CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y~~~~~~k~~i~~si--~~W~~~vl- 160 (306)
+...||||++ +++||-+||+|+||++|+|++||..|+..+++.+||+|||+|+++..++....+.+ ..-++.+.
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~e~mP~~IPfsiL~rk~a~ 90 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYKEDMPQIIPFSILIRKVAD 90 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeecccCCCcccceehhHHHHHH
Confidence 4479999994 58999999999999999999999999999999999999999999988765543321 22122211
Q ss_pred ----chhhhhhhhHHHHHHHHHHHHHHHH-hcCcceeecccch
Q psy3674 161 ----ENSQVFIILSWLMAITPIVLLAAAL-TNNFPFNHNDRKT 198 (306)
Q Consensus 161 ----~~R~~~~dl~~llf~TpLvVva~gf-Tg~l~f~y~qck~ 198 (306)
..|.++...+| .++-|+.+-.+|= .|.+-=|..+.++
T Consensus 91 t~~~~trvllT~~~w-~VL~~v~~~~Vwn~~G~~YTm~~~~ss 132 (1175)
T COG5183 91 TGWKATRVLLTIGLW-CVLQMVKWMGVWNMFGKLYTMMLDGSS 132 (1175)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcceeeeeecCCc
Confidence 13344444444 3555655555554 4444444444443
No 6
>KOG3053|consensus
Probab=99.52 E-value=7.1e-15 Score=137.74 Aligned_cols=113 Identities=21% Similarity=0.384 Sum_probs=73.4
Q ss_pred CCCCCCCCCCCeeeEec--cCCCC---ccccccccCCCccccHHHHHHHHHhcC------CcccCCCCceeeeeeeccch
Q psy3674 79 EIGSEHDENAPVCRICH--GSHEN---LKALCECRGTMGLVHAECLTQWLSESG------RSCCEICNFKYKFKRTLKRP 147 (306)
Q Consensus 79 s~~S~~s~~~~~CRIC~--ge~~~---LIsPC~CkGSl~~VH~~CL~~Wl~~s~------~~~CELCk~~Y~~~~~~k~~ 147 (306)
+.+++..+.+..||||+ ++|++ +++||+|+||.++||++||.+|+.++. +..|.+|+++|.+......
T Consensus 11 ~~~~~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~l~- 89 (293)
T KOG3053|consen 11 SLGSDNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQLG- 89 (293)
T ss_pred hhcCCccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeeccccC-
Confidence 33456677899999999 35543 689999999999999999999998763 5689999999998654332
Q ss_pred hhhhhhhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHhc--Ccceeecccchh
Q psy3674 148 LWETMAGWLYKVVENSQVFIILSWLMAITPIVLLAAALTN--NFPFNHNDRKTH 199 (306)
Q Consensus 148 i~~si~~W~~~vl~~R~~~~dl~~llf~TpLvVva~gfTg--~l~f~y~qck~y 199 (306)
|+..+++.-.....=+|....-.+++++++.+. +++++++|=+-|
T Consensus 90 -------~~~~~Le~~d~~i~r~cp~l~~g~~v~~iYWsAVtyGA~T~lQv~G~ 136 (293)
T KOG3053|consen 90 -------PFDRVLERLDILIFRLCPFLAAGIFVGSIYWSAVTYGAVTVLQVVGQ 136 (293)
T ss_pred -------hHHHHHHHhhhHHhhcChHHHHHHHhheeehhhhhhcceeeeehhhh
Confidence 222332221111111232223344555555544 467777764433
No 7
>KOG1609|consensus
Probab=99.47 E-value=6.3e-15 Score=135.25 Aligned_cols=146 Identities=23% Similarity=0.345 Sum_probs=97.8
Q ss_pred CCCCCCCCCCCCeeeEeccCC---C--CccccccccCCCccccHHHHHHHHHhcCCcccCCCCceeeeeeecc-----ch
Q psy3674 78 DEIGSEHDENAPVCRICHGSH---E--NLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRTLK-----RP 147 (306)
Q Consensus 78 ds~~S~~s~~~~~CRIC~ge~---~--~LIsPC~CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y~~~~~~k-----~~ 147 (306)
++..++.+.+++.||||+.+. + +++.||.|+|++++||+.|+++|+..+++..||+|++.|....+.. ..
T Consensus 68 ~~~~~~~~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~~~~~~~~~ 147 (323)
T KOG1609|consen 68 EESLEESPSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTKLKPLIVIS 147 (323)
T ss_pred CCccccCCCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecceeecceeehh
Confidence 344555566689999999422 2 7899999999999999999999999999999999999999753321 00
Q ss_pred --hhhhhhhhhhcc-----------c--chhhhhhhh------------HHHHHHHHHHHHHHHHhcCcceeecccchhh
Q psy3674 148 --LWETMAGWLYKV-----------V--ENSQVFIIL------------SWLMAITPIVLLAAALTNNFPFNHNDRKTHQ 200 (306)
Q Consensus 148 --i~~si~~W~~~v-----------l--~~R~~~~dl------------~~llf~TpLvVva~gfTg~l~f~y~qck~y~ 200 (306)
.......|.... . ..+.++... ....+++|++.+++|+.+....++..++.|.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 227 (323)
T KOG1609|consen 148 KVRSGALSERTLSGMILLKVALLVAIIVSVLPLLLGLLFELVLGVPSLVVESPLANPLALVALGLLGFKIWIFIILSGYI 227 (323)
T ss_pred hhhhHhhhheeeehhhhhhhhhhheeeEEeehhhhhhhHHHhccccccccCCCccCchhheeecceechHHHHHHHHHHH
Confidence 000111111100 0 011111110 1123455677888899988888888888888
Q ss_pred hhhccccceeeEEeecccccccc
Q psy3674 201 QLQCGFDVRYAMIRKDSCPISIT 223 (306)
Q Consensus 201 ql~~~~~~r~~Ii~~q~~~~s~~ 223 (306)
..+.+.+..+.+++.++......
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~ 250 (323)
T KOG1609|consen 228 FILKSLKVKLVLIRAVIFLLLIK 250 (323)
T ss_pred HHHHHHHHHHhHhhhhccchhhh
Confidence 87777777777777777666543
No 8
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=96.22 E-value=0.0017 Score=44.78 Aligned_cols=40 Identities=28% Similarity=0.845 Sum_probs=28.4
Q ss_pred CeeeEecc---C-CCCccccccccCCCccccHHHHHHHHHhcCCcccCCCC
Q psy3674 89 PVCRICHG---S-HENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICN 135 (306)
Q Consensus 89 ~~CRIC~g---e-~~~LIsPC~CkGSl~~VH~~CL~~Wl~~s~~~~CELCk 135 (306)
+.|-||++ + +.....|| . ...|.+|+.+|++.+ ..|++|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C--~---H~fh~~Ci~~~~~~~--~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPC--G---HVFHRSCIKEWLKRN--NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETT--S---EEEEHHHHHHHHHHS--SB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccC--C---CeeCHHHHHHHHHhC--CcCCccC
Confidence 46889984 2 23334664 3 889999999999885 4899995
No 9
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=95.70 E-value=0.0096 Score=48.26 Aligned_cols=50 Identities=32% Similarity=0.745 Sum_probs=37.3
Q ss_pred CCeeeEecc-------------CCCCccccccccCCCccccHHHHHHHHHhc-CCcccCCCCceeeee
Q psy3674 88 APVCRICHG-------------SHENLKALCECRGTMGLVHAECLTQWLSES-GRSCCEICNFKYKFK 141 (306)
Q Consensus 88 ~~~CRIC~g-------------e~~~LIsPC~CkGSl~~VH~~CL~~Wl~~s-~~~~CELCk~~Y~~~ 141 (306)
.+.|-||+. ++-||+ -+.|. ...|..|+.+|+++. .+..|++|+.++.++
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv-~g~C~---H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLV-WGKCS---HNFHMHCILKWLSTQSSKGQCPMCRQPWKFK 84 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCcee-eccCc---cHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence 678888872 123432 34565 779999999999875 567999999999875
No 10
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=95.35 E-value=0.017 Score=52.96 Aligned_cols=52 Identities=21% Similarity=0.489 Sum_probs=40.1
Q ss_pred CCCCCeeeEecc-CCCCccccccccCCCccccHHHHHHHHHhc--------------CCcccCCCCceeeee
Q psy3674 85 DENAPVCRICHG-SHENLKALCECRGTMGLVHAECLTQWLSES--------------GRSCCEICNFKYKFK 141 (306)
Q Consensus 85 s~~~~~CRIC~g-e~~~LIsPC~CkGSl~~VH~~CL~~Wl~~s--------------~~~~CELCk~~Y~~~ 141 (306)
+.+.-.|-||++ ...+.+++|. +..+..||.+|+..+ +...|++|+......
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CG-----H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCG-----HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCC-----chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 445678999995 4678888873 667889999998643 346899999998753
No 11
>PHA02929 N1R/p28-like protein; Provisional
Probab=95.30 E-value=0.021 Score=53.70 Aligned_cols=49 Identities=20% Similarity=0.600 Sum_probs=36.3
Q ss_pred CCCeeeEeccC--CC-------CccccccccCCCccccHHHHHHHHHhcCCcccCCCCceeeeee
Q psy3674 87 NAPVCRICHGS--HE-------NLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKR 142 (306)
Q Consensus 87 ~~~~CRIC~ge--~~-------~LIsPC~CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y~~~~ 142 (306)
.+..|-||+++ +. ..+.||. +..|..|+.+|+.. ...|++|+..+....
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~-----H~FC~~CI~~Wl~~--~~tCPlCR~~~~~v~ 230 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCN-----HVFCIECIDIWKKE--KNTCPVCRTPFISVI 230 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCC-----CcccHHHHHHHHhc--CCCCCCCCCEeeEEe
Confidence 45799999953 21 1345563 78999999999975 458999999988543
No 12
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.05 E-value=0.0079 Score=46.25 Aligned_cols=51 Identities=20% Similarity=0.414 Sum_probs=24.8
Q ss_pred CCeeeEecc--C-CC-Cccc---cccccCCCccccHHHHHHHHHhcC---------CcccCCCCceeeee
Q psy3674 88 APVCRICHG--S-HE-NLKA---LCECRGTMGLVHAECLTQWLSESG---------RSCCEICNFKYKFK 141 (306)
Q Consensus 88 ~~~CRIC~g--e-~~-~LIs---PC~CkGSl~~VH~~CL~~Wl~~s~---------~~~CELCk~~Y~~~ 141 (306)
+..|.||++ . ++ .... .+.|. +..|..||.+|+.... .-.|+.|+.+...+
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~---~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCG---KKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT-------B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccC---CHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 357999993 1 22 2233 35676 7899999999997642 12699999988754
No 13
>KOG4628|consensus
Probab=94.76 E-value=0.026 Score=55.89 Aligned_cols=46 Identities=26% Similarity=0.759 Sum_probs=37.1
Q ss_pred CeeeEecc---CCCCc-cccccccCCCccccHHHHHHHHHhcCCcccCCCCceeee
Q psy3674 89 PVCRICHG---SHENL-KALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKF 140 (306)
Q Consensus 89 ~~CRIC~g---e~~~L-IsPC~CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y~~ 140 (306)
+.|-||++ +++.| +-||+ +..|..|...||... +..|++||..-..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~-----H~FH~~CIDpWL~~~-r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCS-----HKFHVNCIDPWLTQT-RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCC-----CchhhccchhhHhhc-CccCCCCCCcCCC
Confidence 79999995 34555 68986 679999999999887 5679999996543
No 14
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=94.06 E-value=0.034 Score=42.91 Aligned_cols=22 Identities=32% Similarity=1.067 Sum_probs=18.2
Q ss_pred ccccHHHHHHHHHhcCCcccCCCC
Q psy3674 112 GLVHAECLTQWLSESGRSCCEICN 135 (306)
Q Consensus 112 ~~VH~~CL~~Wl~~s~~~~CELCk 135 (306)
...|..||++|++.+. .|++|+
T Consensus 52 H~FH~~Ci~~Wl~~~~--~CP~CR 73 (73)
T PF12678_consen 52 HIFHFHCISQWLKQNN--TCPLCR 73 (73)
T ss_dssp EEEEHHHHHHHHTTSS--B-TTSS
T ss_pred CCEEHHHHHHHHhcCC--cCCCCC
Confidence 6799999999997665 899996
No 15
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=93.39 E-value=0.04 Score=38.98 Aligned_cols=45 Identities=24% Similarity=0.550 Sum_probs=34.4
Q ss_pred CCeeeEecc-CCCCccccccccCCCcc-ccHHHHHHHHHhcCCcccCCCCceee
Q psy3674 88 APVCRICHG-SHENLKALCECRGTMGL-VHAECLTQWLSESGRSCCEICNFKYK 139 (306)
Q Consensus 88 ~~~CRIC~g-e~~~LIsPC~CkGSl~~-VH~~CL~~Wl~~s~~~~CELCk~~Y~ 139 (306)
...|.||++ ..+..+.||+ .. +-..|+.+|++ +...|.+|+.+..
T Consensus 2 ~~~C~iC~~~~~~~~~~pCg-----H~~~C~~C~~~~~~--~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCG-----HLCFCEECAERLLK--RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTC-----EEEEEHHHHHHHHH--TTSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCC-----ChHHHHHHhHHhcc--cCCCCCcCChhhc
Confidence 357999995 4566789996 34 78899999999 7789999998764
No 16
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.72 E-value=0.061 Score=59.37 Aligned_cols=51 Identities=31% Similarity=0.817 Sum_probs=38.3
Q ss_pred CCCeeeEecc----CCCCcc-ccc-cccCCCccccHHHHHHHHHhcCCcccCCCCceeee
Q psy3674 87 NAPVCRICHG----SHENLK-ALC-ECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKF 140 (306)
Q Consensus 87 ~~~~CRIC~g----e~~~LI-sPC-~CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y~~ 140 (306)
.-..|-||+. -+..|. ..| -|+ .-.|-.||-+|+++++...|++|+.++.+
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCk---nKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCK---NKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhh---hhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 3457999983 233432 333 354 56999999999999999999999988764
No 17
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=92.65 E-value=0.12 Score=32.41 Aligned_cols=38 Identities=32% Similarity=0.847 Sum_probs=27.9
Q ss_pred eeEecc-CCCCccccccccCCCccccHHHHHHHHHhcCCcccCCC
Q psy3674 91 CRICHG-SHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEIC 134 (306)
Q Consensus 91 CRIC~g-e~~~LIsPC~CkGSl~~VH~~CL~~Wl~~s~~~~CELC 134 (306)
|.||++ .....+.||. ...|..|+..|+. .+...|.+|
T Consensus 1 C~iC~~~~~~~~~~~C~-----H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCG-----HTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCC-----ChHHHHHHHHHHH-hCcCCCCCC
Confidence 678884 4556677765 4479999999998 455678876
No 18
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=91.82 E-value=0.2 Score=36.13 Aligned_cols=47 Identities=9% Similarity=0.174 Sum_probs=36.8
Q ss_pred eeeEecc-CCCCccccccccCCCccccHHHHHHHHHhcCCcccCCCCceeeeeee
Q psy3674 90 VCRICHG-SHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRT 143 (306)
Q Consensus 90 ~CRIC~g-e~~~LIsPC~CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y~~~~~ 143 (306)
.|.||.+ -.+|.+.||. ..+-+.|+.+|++. ...|++|+..+..+.+
T Consensus 3 ~Cpi~~~~~~~Pv~~~~G-----~v~~~~~i~~~~~~--~~~cP~~~~~~~~~~l 50 (63)
T smart00504 3 LCPISLEVMKDPVILPSG-----QTYERRAIEKWLLS--HGTDPVTGQPLTHEDL 50 (63)
T ss_pred CCcCCCCcCCCCEECCCC-----CEEeHHHHHHHHHH--CCCCCCCcCCCChhhc
Confidence 6889974 3568888873 67889999999987 4679999998865443
No 19
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=91.53 E-value=0.2 Score=32.50 Aligned_cols=42 Identities=26% Similarity=0.774 Sum_probs=30.0
Q ss_pred eeeEeccC-CCCc-cccccccCCCccccHHHHHHHHHhcCCcccCCCCce
Q psy3674 90 VCRICHGS-HENL-KALCECRGTMGLVHAECLTQWLSESGRSCCEICNFK 137 (306)
Q Consensus 90 ~CRIC~ge-~~~L-IsPC~CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~ 137 (306)
.|-||++. ..+. +.||. ...|..|+..|++. +...|.+|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~-----H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCG-----HVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCC-----ChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 37788843 2343 44553 45899999999987 56679999875
No 20
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=90.51 E-value=0.19 Score=33.65 Aligned_cols=39 Identities=31% Similarity=0.797 Sum_probs=30.9
Q ss_pred eeEecc-CCCCc-cccccccCCCccccHHHHHHHHHhcCCcccCCC
Q psy3674 91 CRICHG-SHENL-KALCECRGTMGLVHAECLTQWLSESGRSCCEIC 134 (306)
Q Consensus 91 CRIC~g-e~~~L-IsPC~CkGSl~~VH~~CL~~Wl~~s~~~~CELC 134 (306)
|.||++ ...+. +.||. ..++..|+.+|++.++...|.+|
T Consensus 1 C~iC~~~~~~~~~~~~C~-----H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCG-----HSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTS-----EEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCC-----CcchHHHHHHHHHhcCCccCCcC
Confidence 678875 34455 78885 66999999999998888889988
No 21
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=90.38 E-value=0.32 Score=49.24 Aligned_cols=49 Identities=27% Similarity=0.710 Sum_probs=36.6
Q ss_pred CCCCeeeEeccC----C----------CCccccccccCCCccccHHHHHHHHHhcCCcccCCCCceeeee
Q psy3674 86 ENAPVCRICHGS----H----------ENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFK 141 (306)
Q Consensus 86 ~~~~~CRIC~ge----~----------~~LIsPC~CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y~~~ 141 (306)
.+...|-||.++ + .|-.-||. +..|-+||+.|++.+ ..|++|+.+..+.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCG-----HilHl~CLknW~ERq--QTCPICr~p~ifd 347 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCG-----HILHLHCLKNWLERQ--QTCPICRRPVIFD 347 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCccccccc-----ceeeHHHHHHHHHhc--cCCCcccCccccc
Confidence 356799999843 1 23356774 679999999999865 5799999996653
No 22
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.35 E-value=0.23 Score=49.01 Aligned_cols=45 Identities=24% Similarity=0.604 Sum_probs=35.1
Q ss_pred CCCeeeEeccC----CCCccccccccCCCccccHHHHHHHHH-hcCCcccCCCCcee
Q psy3674 87 NAPVCRICHGS----HENLKALCECRGTMGLVHAECLTQWLS-ESGRSCCEICNFKY 138 (306)
Q Consensus 87 ~~~~CRIC~ge----~~~LIsPC~CkGSl~~VH~~CL~~Wl~-~s~~~~CELCk~~Y 138 (306)
.+..|-||.++ +.-.+.||+ +-.|..|+++|+. .+ ..|+.|+++-
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~-----H~FH~~Cv~kW~~~y~--~~CPvCrt~i 371 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCD-----HRFHVGCVDKWLLGYS--NKCPVCRTAI 371 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccC-----ceechhHHHHHHhhhc--ccCCccCCCC
Confidence 55799999952 444579996 5689999999997 43 5799999864
No 23
>KOG0823|consensus
Probab=89.33 E-value=0.58 Score=44.21 Aligned_cols=52 Identities=27% Similarity=0.606 Sum_probs=40.8
Q ss_pred CCCCCeeeEecc-CCCCccccccccCCCccccHHHHHHHHHhc-CCcccCCCCceeeee
Q psy3674 85 DENAPVCRICHG-SHENLKALCECRGTMGLVHAECLTQWLSES-GRSCCEICNFKYKFK 141 (306)
Q Consensus 85 s~~~~~CRIC~g-e~~~LIsPC~CkGSl~~VH~~CL~~Wl~~s-~~~~CELCk~~Y~~~ 141 (306)
+...-.|-||++ ..+|.+++|. +..==.||-||+..+ +...|++||.+-..+
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCG-----HLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCG-----HLFCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCCceeeeeeccccCCCEEeecc-----cceehHHHHHHHhhcCCCeeCCccccccccc
Confidence 445678999996 6899999996 223346999999876 567789999998864
No 24
>PHA02926 zinc finger-like protein; Provisional
Probab=88.65 E-value=0.51 Score=44.77 Aligned_cols=51 Identities=20% Similarity=0.543 Sum_probs=37.4
Q ss_pred CCCCeeeEeccC-------C---CCccccccccCCCccccHHHHHHHHHhc----CCcccCCCCceeeee
Q psy3674 86 ENAPVCRICHGS-------H---ENLKALCECRGTMGLVHAECLTQWLSES----GRSCCEICNFKYKFK 141 (306)
Q Consensus 86 ~~~~~CRIC~ge-------~---~~LIsPC~CkGSl~~VH~~CL~~Wl~~s----~~~~CELCk~~Y~~~ 141 (306)
+.+..|-||++. . -.++.+|. +.....|+.+|.+.+ ....|++|+..|..-
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-----HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCN-----HIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCC-----chHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 356899999952 1 13456664 557789999999864 256799999999864
No 25
>KOG0802|consensus
Probab=88.49 E-value=0.32 Score=50.15 Aligned_cols=45 Identities=22% Similarity=0.660 Sum_probs=35.6
Q ss_pred CCCeeeEeccC--CC----CccccccccCCCccccHHHHHHHHHhcCCcccCCCCcee
Q psy3674 87 NAPVCRICHGS--HE----NLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKY 138 (306)
Q Consensus 87 ~~~~CRIC~ge--~~----~LIsPC~CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y 138 (306)
....|.||.++ .+ +-..||. +..|..||..|++. ...|++|+..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~-----Hifh~~CL~~W~er--~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCG-----HIFHDSCLRSWFER--QQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecc-----cchHHHHHHHHHHH--hCcCCcchhhh
Confidence 46799999953 22 5677774 78999999999988 57899999943
No 26
>KOG1493|consensus
Probab=86.92 E-value=0.26 Score=39.75 Aligned_cols=48 Identities=31% Similarity=0.762 Sum_probs=36.7
Q ss_pred eeeEec----c---------CCCCccccccccCCCccccHHHHHHHHHhc-CCcccCCCCceeeee
Q psy3674 90 VCRICH----G---------SHENLKALCECRGTMGLVHAECLTQWLSES-GRSCCEICNFKYKFK 141 (306)
Q Consensus 90 ~CRIC~----g---------e~~~LIsPC~CkGSl~~VH~~CL~~Wl~~s-~~~~CELCk~~Y~~~ 141 (306)
.|-||+ | ++-||+-- .|. ...|..|+.+|+..+ +...|++|+.+|+++
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C~---h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~~ 83 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWG-YCL---HAFHAHCILKWLNTPTSQGQCPMCRQTWQFK 83 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHH-HHH---HHHHHHHHHHHhcCccccccCCcchheeEec
Confidence 778887 1 24577533 554 779999999999876 467899999999874
No 27
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.60 E-value=0.85 Score=46.06 Aligned_cols=61 Identities=16% Similarity=0.356 Sum_probs=43.5
Q ss_pred CCCCeeeEecc-CCCCccccccccCCCccccHHHHHHHHHhcCCcccCCCCceeeeeeeccchhhhhhh
Q psy3674 86 ENAPVCRICHG-SHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRTLKRPLWETMA 153 (306)
Q Consensus 86 ~~~~~CRIC~g-e~~~LIsPC~CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y~~~~~~k~~i~~si~ 153 (306)
+..-.|.||++ -..|.+.||. +.....|+..|+... ..|.+|+..+....+++......++
T Consensus 24 e~~l~C~IC~d~~~~PvitpCg-----H~FCs~CI~~~l~~~--~~CP~Cr~~~~~~~Lr~N~~L~~iV 85 (397)
T TIGR00599 24 DTSLRCHICKDFFDVPVLTSCS-----HTFCSLCIRRCLSNQ--PKCPLCRAEDQESKLRSNWLVSEIV 85 (397)
T ss_pred ccccCCCcCchhhhCccCCCCC-----CchhHHHHHHHHhCC--CCCCCCCCccccccCccchHHHHHH
Confidence 35569999995 4577788875 456678999999764 4799999998866555444333333
No 28
>KOG1734|consensus
Probab=82.94 E-value=0.53 Score=45.85 Aligned_cols=81 Identities=23% Similarity=0.587 Sum_probs=54.1
Q ss_pred CCCCeeeEecc-----C-CCCc---cccccccCCCccccHHHHHHHHHhcCCcccCCCCceeeeeeeccchh------hh
Q psy3674 86 ENAPVCRICHG-----S-HENL---KALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRTLKRPL------WE 150 (306)
Q Consensus 86 ~~~~~CRIC~g-----e-~~~L---IsPC~CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y~~~~~~k~~i------~~ 150 (306)
-+..+|-+|-+ . ++-+ +.-=.|. .-.|+-|.+-|--...+..|+-||.+-..++..+.+. +-
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCn---HvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsnpWekph~~yg 298 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCN---HVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWEKPHVWYG 298 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecc---cchHHHhhhhheeecCCCCCchHHHHhhHhhhccCccccchhHHH
Confidence 45569999952 1 1111 1222343 5689999999999999999999999998887765442 22
Q ss_pred hhhhhhhcccchhhhhhhhHHHHHHHHHHHHH
Q psy3674 151 TMAGWLYKVVENSQVFIILSWLMAITPIVLLA 182 (306)
Q Consensus 151 si~~W~~~vl~~R~~~~dl~~llf~TpLvVva 182 (306)
.+..|+++ ++.|+|+++..
T Consensus 299 ~LldwlRy-------------lVawqpvi~~i 317 (328)
T KOG1734|consen 299 QLLDWLRY-------------LVAWQPVIITI 317 (328)
T ss_pred HHHHHHHH-------------HHHHHHHHHHH
Confidence 34445444 46888876644
No 29
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=80.99 E-value=0.88 Score=30.56 Aligned_cols=37 Identities=24% Similarity=0.729 Sum_probs=26.4
Q ss_pred eeEecc-CCCC-ccccccccCCCccccHHHHHHHHHhcCCcccCCC
Q psy3674 91 CRICHG-SHEN-LKALCECRGTMGLVHAECLTQWLSESGRSCCEIC 134 (306)
Q Consensus 91 CRIC~g-e~~~-LIsPC~CkGSl~~VH~~CL~~Wl~~s~~~~CELC 134 (306)
|.||++ -.++ .+.||. .....+|+++|++. ...|.+|
T Consensus 1 C~iC~~~~~~~~~~~~CG-----H~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCG-----HSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTS-----EEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccCcCEECCCC-----CchhHHHHHHHHHC--cCCCcCC
Confidence 668874 3456 467774 66899999999988 3688887
No 30
>KOG1785|consensus
Probab=80.47 E-value=0.69 Score=47.30 Aligned_cols=48 Identities=23% Similarity=0.588 Sum_probs=37.7
Q ss_pred CCeeeEeccCCC-CccccccccCCCccccHHHHHHHHHhcCCcccCCCCceeee
Q psy3674 88 APVCRICHGSHE-NLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKF 140 (306)
Q Consensus 88 ~~~CRIC~ge~~-~LIsPC~CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y~~ 140 (306)
-..|.||-+++. --|-||. ...-..||..|..+++...|..|+++.+-
T Consensus 369 FeLCKICaendKdvkIEPCG-----HLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 369 FELCKICAENDKDVKIEPCG-----HLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHHhhccCCCccccccc-----chHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 358999986554 4489995 34455799999999988999999998763
No 31
>KOG0828|consensus
Probab=80.11 E-value=1.5 Score=45.96 Aligned_cols=49 Identities=22% Similarity=0.636 Sum_probs=35.9
Q ss_pred CCCCCCeeeEeccC------------------CCCccccccccCCCccccHHHHHHHHHhcCCcccCCCCcee
Q psy3674 84 HDENAPVCRICHGS------------------HENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKY 138 (306)
Q Consensus 84 ~s~~~~~CRIC~ge------------------~~~LIsPC~CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y 138 (306)
.-+....|-||... .+-+++||+ +..|+.||++|...- +..|+.|+...
T Consensus 567 ~~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~-----HifH~~CL~~WMd~y-kl~CPvCR~pL 633 (636)
T KOG0828|consen 567 FVRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCH-----HIFHRQCLLQWMDTY-KLICPVCRCPL 633 (636)
T ss_pred hhhccccceEeccccceeeccCcchhhhhhhhccccccchH-----HHHHHHHHHHHHhhh-cccCCccCCCC
Confidence 34567799999821 145677997 679999999999742 25799998653
No 32
>PLN02436 cellulose synthase A
Probab=79.15 E-value=1.8 Score=48.61 Aligned_cols=53 Identities=23% Similarity=0.563 Sum_probs=38.1
Q ss_pred CCCCCCeeeEecc-----CCCCcccccc-ccCCCccccHHHHHHHHHhcCCcccCCCCceeee
Q psy3674 84 HDENAPVCRICHG-----SHENLKALCE-CRGTMGLVHAECLTQWLSESGRSCCEICNFKYKF 140 (306)
Q Consensus 84 ~s~~~~~CRIC~g-----e~~~LIsPC~-CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y~~ 140 (306)
...++.+|+||-+ .++++--.|+ |. --|=+.|.+ .-...++..|..||++|+-
T Consensus 32 ~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~---fpvCr~Cye-yer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 32 QELSGQTCQICGDEIELTVDGEPFVACNECA---FPVCRPCYE-YERREGNQACPQCKTRYKR 90 (1094)
T ss_pred cccCCccccccccccCcCCCCCEEEeeccCC---Cccccchhh-hhhhcCCccCcccCCchhh
Confidence 3456779999973 3566666776 63 337778984 4455678899999999983
No 33
>KOG0317|consensus
Probab=77.34 E-value=3 Score=40.74 Aligned_cols=53 Identities=23% Similarity=0.537 Sum_probs=41.3
Q ss_pred CCCCCCCCCeeeEeccC-CCCccccccccCCCccccHHHHHHHHHhcCCcccCCCCceeee
Q psy3674 81 GSEHDENAPVCRICHGS-HENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKF 140 (306)
Q Consensus 81 ~S~~s~~~~~CRIC~ge-~~~LIsPC~CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y~~ 140 (306)
.+..++....|-+|+++ .+|--+||. +..=-+|+..|..++.. |++|+.+++-
T Consensus 232 ~~~i~~a~~kC~LCLe~~~~pSaTpCG-----HiFCWsCI~~w~~ek~e--CPlCR~~~~p 285 (293)
T KOG0317|consen 232 LSSIPEATRKCSLCLENRSNPSATPCG-----HIFCWSCILEWCSEKAE--CPLCREKFQP 285 (293)
T ss_pred CccCCCCCCceEEEecCCCCCCcCcCc-----chHHHHHHHHHHccccC--CCcccccCCC
Confidence 34456777999999965 678889996 33445899999988654 9999998874
No 34
>KOG4265|consensus
Probab=77.31 E-value=2.5 Score=42.23 Aligned_cols=46 Identities=26% Similarity=0.642 Sum_probs=33.6
Q ss_pred CCCCCCeeeEec-cCCCCcccccc----ccCCCccccHHHHHHHHHhcCCcccCCCCceee
Q psy3674 84 HDENAPVCRICH-GSHENLKALCE----CRGTMGLVHAECLTQWLSESGRSCCEICNFKYK 139 (306)
Q Consensus 84 ~s~~~~~CRIC~-ge~~~LIsPC~----CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y~ 139 (306)
.+++++.|=||. +.-+-++.||+ |+| |.+.-.-. +..|++|+..+.
T Consensus 286 ~~~~gkeCVIClse~rdt~vLPCRHLCLCs~--------Ca~~Lr~q--~n~CPICRqpi~ 336 (349)
T KOG4265|consen 286 ESESGKECVICLSESRDTVVLPCRHLCLCSG--------CAKSLRYQ--TNNCPICRQPIE 336 (349)
T ss_pred cccCCCeeEEEecCCcceEEecchhhehhHh--------HHHHHHHh--hcCCCccccchH
Confidence 457899999999 55566777765 665 87776622 457999998765
No 35
>KOG0827|consensus
Probab=76.10 E-value=2 Score=43.77 Aligned_cols=45 Identities=31% Similarity=0.801 Sum_probs=31.0
Q ss_pred CCeeeEecc---CCCCccccccccCCCccccHHHHHHHHHhcCC-cccCCCC
Q psy3674 88 APVCRICHG---SHENLKALCECRGTMGLVHAECLTQWLSESGR-SCCEICN 135 (306)
Q Consensus 88 ~~~CRIC~g---e~~~LIsPC~CkGSl~~VH~~CL~~Wl~~s~~-~~CELCk 135 (306)
...|-||-+ .+..|-.-=.|- ...|..||.+|+..... +.|++|+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cG---hifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCG---HIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred cceeeEeccCCccccccccccchh---hHHHHHHHHHHHccCCccCCCCcee
Confidence 468999952 133442211232 56899999999988755 7999999
No 36
>PLN02189 cellulose synthase
Probab=73.84 E-value=2.1 Score=48.02 Aligned_cols=52 Identities=27% Similarity=0.614 Sum_probs=38.2
Q ss_pred CCCCCeeeEecc-----CCCCcccccc-ccCCCccccHHHHHHHHHhcCCcccCCCCceeee
Q psy3674 85 DENAPVCRICHG-----SHENLKALCE-CRGTMGLVHAECLTQWLSESGRSCCEICNFKYKF 140 (306)
Q Consensus 85 s~~~~~CRIC~g-----e~~~LIsPC~-CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y~~ 140 (306)
..++.+|+||-+ .++.+--.|+ |. --|=+.|.+ .-...++..|..||++|+-
T Consensus 31 ~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~---fpvCr~Cye-yer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 31 NLDGQVCEICGDEIGLTVDGDLFVACNECG---FPVCRPCYE-YERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred cccCccccccccccCcCCCCCEEEeeccCC---Cccccchhh-hhhhcCCccCcccCCchhh
Confidence 446679999973 3566667887 64 337788984 3455678899999999983
No 37
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=66.13 E-value=5.6 Score=32.52 Aligned_cols=29 Identities=17% Similarity=0.590 Sum_probs=25.1
Q ss_pred ccccHHHHHHHHHhcCCcccCCCCceeeeee
Q psy3674 112 GLVHAECLTQWLSESGRSCCEICNFKYKFKR 142 (306)
Q Consensus 112 ~~VH~~CL~~Wl~~s~~~~CELCk~~Y~~~~ 142 (306)
...|..|+.+||.. +..|++++.+|++..
T Consensus 56 HaFH~HCI~rWL~T--k~~CPld~q~w~~~~ 84 (88)
T COG5194 56 HAFHDHCIYRWLDT--KGVCPLDRQTWVLAD 84 (88)
T ss_pred hHHHHHHHHHHHhh--CCCCCCCCceeEEec
Confidence 56899999999998 568999999998753
No 38
>KOG0804|consensus
Probab=66.06 E-value=3 Score=43.10 Aligned_cols=46 Identities=28% Similarity=0.756 Sum_probs=33.7
Q ss_pred CCCCCeeeEecc---CC--CCccccccccCCCccccHHHHHHHHHhcCCcccCCCCceee
Q psy3674 85 DENAPVCRICHG---SH--ENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYK 139 (306)
Q Consensus 85 s~~~~~CRIC~g---e~--~~LIsPC~CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y~ 139 (306)
..+.|.|-+|++ ++ +.+-.+|. .-.|..||++|-.+ .|++|+|--.
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~-----Hsfh~~cl~~w~~~----scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCN-----HSFHCSCLMKWWDS----SCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecc-----cccchHHHhhcccC----cChhhhhhcC
Confidence 467899999993 33 33445554 56899999999776 5999987554
No 39
>KOG2930|consensus
Probab=63.44 E-value=6.7 Score=33.45 Aligned_cols=30 Identities=27% Similarity=0.709 Sum_probs=25.4
Q ss_pred ccccHHHHHHHHHhcCCcccCCCCceeeeeee
Q psy3674 112 GLVHAECLTQWLSESGRSCCEICNFKYKFKRT 143 (306)
Q Consensus 112 ~~VH~~CL~~Wl~~s~~~~CELCk~~Y~~~~~ 143 (306)
.-.|..|+.+||+.+ ..|+||..+..+.+.
T Consensus 83 HaFH~hCisrWlktr--~vCPLdn~eW~~qr~ 112 (114)
T KOG2930|consen 83 HAFHFHCISRWLKTR--NVCPLDNKEWVFQRY 112 (114)
T ss_pred hHHHHHHHHHHHhhc--CcCCCcCcceeEeec
Confidence 568999999999885 579999999887643
No 40
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=55.43 E-value=9 Score=28.14 Aligned_cols=43 Identities=23% Similarity=0.485 Sum_probs=20.6
Q ss_pred eeEecc---CCCCccccccccCCCccccHHHHHHHHHhc--CCcccCCCCceee
Q psy3674 91 CRICHG---SHENLKALCECRGTMGLVHAECLTQWLSES--GRSCCEICNFKYK 139 (306)
Q Consensus 91 CRIC~g---e~~~LIsPC~CkGSl~~VH~~CL~~Wl~~s--~~~~CELCk~~Y~ 139 (306)
|.+|-+ ..+.-..||.|. ++-|+.=|.... ....|+-|+.+|.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cg------f~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECG------FQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----------HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCC------CcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 445652 234457999997 556777777665 4779999999984
No 41
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=54.51 E-value=11 Score=26.01 Aligned_cols=39 Identities=23% Similarity=0.566 Sum_probs=29.8
Q ss_pred eeEecc----CCCCccccccccCCCccccHHHHHHHHHhcCCcccCCCCc
Q psy3674 91 CRICHG----SHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNF 136 (306)
Q Consensus 91 CRIC~g----e~~~LIsPC~CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~ 136 (306)
|-||+. +..+.+.+|. ..+...|+.+.. .....|.+|+.
T Consensus 2 C~~C~~~~~~~~~~~l~~Cg-----H~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCG-----HIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccC-----CHHHHHHHHhhc--CCCCCCcCCCC
Confidence 668873 2356789884 678889999988 66778999974
No 42
>KOG1645|consensus
Probab=51.06 E-value=12 Score=38.56 Aligned_cols=53 Identities=25% Similarity=0.664 Sum_probs=37.7
Q ss_pred CCCeeeEeccC-----CCCccccccccCCCccccHHHHHHHHHhcCCcccCCCCceeeeeee
Q psy3674 87 NAPVCRICHGS-----HENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRT 143 (306)
Q Consensus 87 ~~~~CRIC~ge-----~~~LIsPC~CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y~~~~~ 143 (306)
.+-.|-||+++ +..+++| .|. ...-..|.++|+-.+-...|.+|+.+-..+.+
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl-~cg---hlFgs~cie~wl~k~~~~~cp~c~~katkr~i 60 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSL-QCG---HLFGSQCIEKWLGKKTKMQCPLCSGKATKRQI 60 (463)
T ss_pred ccccCceeeeeeeecCceEEeee-ccc---ccccHHHHHHHHhhhhhhhCcccCChhHHHHH
Confidence 35689999953 3344444 343 56778999999976667789999988765433
No 43
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=50.29 E-value=8.4 Score=33.85 Aligned_cols=41 Identities=17% Similarity=0.354 Sum_probs=27.1
Q ss_pred CCCCeeeEecc---C-CCCccccccccCCC-ccccHHHHHHHHHhc
Q psy3674 86 ENAPVCRICHG---S-HENLKALCECRGTM-GLVHAECLTQWLSES 126 (306)
Q Consensus 86 ~~~~~CRIC~g---e-~~~LIsPC~CkGSl-~~VH~~CL~~Wl~~s 126 (306)
...-.|+||++ + ++-..-+|.-.-.+ +..|.+|+++|-+..
T Consensus 24 ~~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 24 RCTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred ccCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhc
Confidence 34668999994 3 35555666544333 348999999996443
No 44
>PF14004 DUF4227: Protein of unknown function (DUF4227)
Probab=50.17 E-value=54 Score=25.88 Aligned_cols=49 Identities=22% Similarity=0.480 Sum_probs=35.7
Q ss_pred hhHHHHHHHHH---HHHHHHHHHHHHHHHHhhcchheee-eccceeEEecCCCCC
Q psy3674 248 KYFKNMRTQVL---SQLVWYYDMLFMIVRAYFENWHFYY-IRDHDIEIIFPERPE 298 (306)
Q Consensus 248 ~~~~~m~~~~~---~~l~~y~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 298 (306)
.|++..++++| +|++.||+++ .|-...+|-|||= -.-+-+|+.-++.+|
T Consensus 2 ~~~~~ik~~~LF~~~T~lfYy~~~--w~~~~~~~~hrY~eP~G~AVKV~~~~~~~ 54 (71)
T PF14004_consen 2 RWLDMIKFFLLFTGCTLLFYYAIL--WVSDEYEPYHRYDEPEGSAVKVFQMENEE 54 (71)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccCCCCCCCCCceEeeeccCCCc
Confidence 35555666665 8899999875 4667888888886 566778888777655
No 45
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=47.16 E-value=20 Score=40.69 Aligned_cols=51 Identities=27% Similarity=0.587 Sum_probs=32.4
Q ss_pred CCCCCeeeEecc-----CCCCcccccc-ccCCCccccHHHHHHHHHhcCCcccCCCCceee
Q psy3674 85 DENAPVCRICHG-----SHENLKALCE-CRGTMGLVHAECLTQWLSESGRSCCEICNFKYK 139 (306)
Q Consensus 85 s~~~~~CRIC~g-----e~~~LIsPC~-CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y~ 139 (306)
..++.+|+||-+ .++++---|+ |. --|=+.|.+-= ...++.+|..||++|+
T Consensus 14 ~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~---FPVCrpCYEYE-r~eG~q~CPqCktrYk 70 (1079)
T PLN02638 14 HGGGQVCQICGDNVGKTVDGEPFVACDVCA---FPVCRPCYEYE-RKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ccCCceeeecccccCcCCCCCEEEEeccCC---Cccccchhhhh-hhcCCccCCccCCchh
Confidence 446779999963 2344433332 21 12556798533 3447889999999998
No 46
>PLN02195 cellulose synthase A
Probab=46.37 E-value=16 Score=41.07 Aligned_cols=49 Identities=29% Similarity=0.617 Sum_probs=31.4
Q ss_pred CCCeeeEecc-----CCCCcccccc-ccCCCccccHHHHHHHHHhcCCcccCCCCceee
Q psy3674 87 NAPVCRICHG-----SHENLKALCE-CRGTMGLVHAECLTQWLSESGRSCCEICNFKYK 139 (306)
Q Consensus 87 ~~~~CRIC~g-----e~~~LIsPC~-CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y~ 139 (306)
++.+|+||-+ .++++---|+ |. --|=+.|.+- =+..|+.+|..||++|+
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~---~pvCrpCyey-er~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECS---YPLCKACLEY-EIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCC---Cccccchhhh-hhhcCCccCCccCCccc
Confidence 5679999963 2333332232 21 2266689843 33447889999999999
No 47
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=45.60 E-value=15 Score=32.55 Aligned_cols=55 Identities=22% Similarity=0.439 Sum_probs=41.6
Q ss_pred CCCeeeEecc--CCCCccccccccCCCccccHHHHHHHHHhcCCcccCCCCceeeeee
Q psy3674 87 NAPVCRICHG--SHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKR 142 (306)
Q Consensus 87 ~~~~CRIC~g--e~~~LIsPC~CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y~~~~ 142 (306)
.--.|-||++ .++.++.|=.|-|. +.---=|..-|-..+--..|++|++.|+...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY-~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGY-SICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccch-HHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 4568999994 47888999999882 3344445677877777789999999998643
No 48
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=45.55 E-value=6 Score=30.90 Aligned_cols=30 Identities=20% Similarity=0.549 Sum_probs=20.4
Q ss_pred CCCeeeEecc---CCCCccccccccCCCccccHHHHHH
Q psy3674 87 NAPVCRICHG---SHENLKALCECRGTMGLVHAECLTQ 121 (306)
Q Consensus 87 ~~~~CRIC~g---e~~~LIsPC~CkGSl~~VH~~CL~~ 121 (306)
++..|.+|.. ...-.+.||. ..||..|+.|
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~-----~v~H~~C~~r 109 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCG-----HVVHYSCIKR 109 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCC-----eEEecccccC
Confidence 4567999983 3223357774 6899999764
No 49
>PLN02400 cellulose synthase
Probab=45.24 E-value=17 Score=41.32 Aligned_cols=52 Identities=25% Similarity=0.664 Sum_probs=32.3
Q ss_pred CCCCCeeeEecc-----CCCCcccccc-ccCCCccccHHHHHHHHHhcCCcccCCCCceeee
Q psy3674 85 DENAPVCRICHG-----SHENLKALCE-CRGTMGLVHAECLTQWLSESGRSCCEICNFKYKF 140 (306)
Q Consensus 85 s~~~~~CRIC~g-----e~~~LIsPC~-CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y~~ 140 (306)
..++.+|+||-+ .++++---|+ |. --|=+.|.+-= ..-++..|..||++|+-
T Consensus 33 ~~~gqiCqICGD~VG~t~dGe~FVAC~eCa---FPVCRpCYEYE-RkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 33 NLNGQICQICGDDVGVTETGDVFVACNECA---FPVCRPCYEYE-RKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred ccCCceeeecccccCcCCCCCEEEEEccCC---Cccccchhhee-cccCCccCcccCCcccc
Confidence 456779999973 2444433332 21 22556787432 33478899999999983
No 50
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=45.05 E-value=15 Score=36.78 Aligned_cols=36 Identities=28% Similarity=0.791 Sum_probs=27.4
Q ss_pred ccccccCCCccccHHHHHHHHHhc-----------CCcccCCCCceeeee
Q psy3674 103 ALCECRGTMGLVHAECLTQWLSES-----------GRSCCEICNFKYKFK 141 (306)
Q Consensus 103 sPC~CkGSl~~VH~~CL~~Wl~~s-----------~~~~CELCk~~Y~~~ 141 (306)
.+|.|+ -.==.+||-+|+.++ ++..|+.|+.+|=+.
T Consensus 307 ~~C~CR---PmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 307 QQCYCR---PMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred cccccc---chHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 477887 233467999999875 467899999998653
No 51
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=44.71 E-value=18 Score=41.03 Aligned_cols=58 Identities=26% Similarity=0.584 Sum_probs=35.8
Q ss_pred CCCCCCCCCCCeeeEecc-----CCCCcccccc-ccCCCccccHHHHHHHHHhcCCcccCCCCceeee
Q psy3674 79 EIGSEHDENAPVCRICHG-----SHENLKALCE-CRGTMGLVHAECLTQWLSESGRSCCEICNFKYKF 140 (306)
Q Consensus 79 s~~S~~s~~~~~CRIC~g-----e~~~LIsPC~-CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y~~ 140 (306)
..+...+-++.+|.||-+ .++++---|+ |. --|-+.|.+- =...++..|..||++|+-
T Consensus 6 ~~~~~~~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~---fpvCr~cyey-e~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 6 RPPTRQSADAKTCRVCGDEVGVKEDGQPFVACHVCG---FPVCKPCYEY-ERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CCccccCCCcchhhccccccCcCCCCCEEEEeccCC---Cccccchhhh-hhhcCCccCCccCCchhh
Confidence 334445667889999963 2344432232 21 2255679843 334478899999999983
No 52
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=41.14 E-value=21 Score=28.85 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=17.2
Q ss_pred cchheeeeccceeEEecCCC
Q psy3674 277 ENWHFYYIRDHDIEIIFPER 296 (306)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~ 296 (306)
+.||.|.|.+.++.|-||=.
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp 24 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVP 24 (93)
T ss_pred CCCcEEEeEcCEEEEEEECC
Confidence 57999999999999988744
No 53
>KOG4692|consensus
Probab=39.11 E-value=22 Score=36.36 Aligned_cols=49 Identities=29% Similarity=0.504 Sum_probs=34.2
Q ss_pred CCCCCeeeEec-cCCCCccccccccCCCccccHHHHHHHHHhcCCcccCCCCceeee
Q psy3674 85 DENAPVCRICH-GSHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKF 140 (306)
Q Consensus 85 s~~~~~CRIC~-ge~~~LIsPC~CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y~~ 140 (306)
..++..|-||+ ++-+....||.=+. -..|+.|=+- +...|=.||+.-..
T Consensus 419 ~sEd~lCpICyA~pi~Avf~PC~H~S-----C~~CI~qHlm--N~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 419 DSEDNLCPICYAGPINAVFAPCSHRS-----CYGCITQHLM--NCKRCFFCKTTVID 468 (489)
T ss_pred CcccccCcceecccchhhccCCCCch-----HHHHHHHHHh--cCCeeeEecceeee
Confidence 35778999999 78899999996221 1125555443 45679999988764
No 54
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=37.95 E-value=15 Score=36.66 Aligned_cols=52 Identities=19% Similarity=0.371 Sum_probs=37.6
Q ss_pred CCCeeeEecc-CCCCccccccccCCCccccHHHHHHHHHhcCCcccCCCCceeeeeeecc
Q psy3674 87 NAPVCRICHG-SHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRTLK 145 (306)
Q Consensus 87 ~~~~CRIC~g-e~~~LIsPC~CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y~~~~~~k 145 (306)
....||||++ -.-|+++||.= -.-.-|+++-+.. ...|++|.+++...+.+.
T Consensus 24 s~lrC~IC~~~i~ip~~TtCgH-----tFCslCIR~hL~~--qp~CP~Cr~~~~esrlr~ 76 (391)
T COG5432 24 SMLRCRICDCRISIPCETTCGH-----TFCSLCIRRHLGT--QPFCPVCREDPCESRLRG 76 (391)
T ss_pred hHHHhhhhhheeecceeccccc-----chhHHHHHHHhcC--CCCCccccccHHhhhccc
Confidence 3468999985 35688888862 2334577776654 468999999999877765
No 55
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=36.13 E-value=19 Score=25.28 Aligned_cols=21 Identities=19% Similarity=0.784 Sum_probs=15.3
Q ss_pred ccHHHHHHHHHhcCCcccCCC
Q psy3674 114 VHAECLTQWLSESGRSCCEIC 134 (306)
Q Consensus 114 VH~~CL~~Wl~~s~~~~CELC 134 (306)
+|..|+++.++......|+.|
T Consensus 23 ~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 23 LHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp E-HHHHHHHTTT-SS-B-TTT
T ss_pred HHHHHHHHHHhcCCCCCCcCC
Confidence 999999999998877789877
No 56
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=31.96 E-value=26 Score=26.64 Aligned_cols=47 Identities=9% Similarity=0.147 Sum_probs=31.2
Q ss_pred eeeEecc-CCCCccccccccCCCccccHHHHHHHHHhcCCcccCCCCceeeeee
Q psy3674 90 VCRICHG-SHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKR 142 (306)
Q Consensus 90 ~CRIC~g-e~~~LIsPC~CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y~~~~ 142 (306)
.|-|+++ =.+|.+.||. +..=+.|+++|+.. +...|.+|+.......
T Consensus 6 ~CpIt~~lM~dPVi~~~G-----~tyer~~I~~~l~~-~~~~~P~t~~~l~~~~ 53 (73)
T PF04564_consen 6 LCPITGELMRDPVILPSG-----HTYERSAIERWLEQ-NGGTDPFTRQPLSESD 53 (73)
T ss_dssp B-TTTSSB-SSEEEETTS-----EEEEHHHHHHHHCT-TSSB-TTT-SB-SGGG
T ss_pred CCcCcCcHhhCceeCCcC-----CEEcHHHHHHHHHc-CCCCCCCCCCcCCccc
Confidence 4666653 2567777754 56788999999988 5678999988877643
No 57
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=30.63 E-value=45 Score=27.11 Aligned_cols=51 Identities=27% Similarity=0.592 Sum_probs=21.5
Q ss_pred CCCCeeeEecc-----CCCCcccccc-ccCCCccccHHHHHHHHHhcCCcccCCCCceeee
Q psy3674 86 ENAPVCRICHG-----SHENLKALCE-CRGTMGLVHAECLTQWLSESGRSCCEICNFKYKF 140 (306)
Q Consensus 86 ~~~~~CRIC~g-----e~~~LIsPC~-CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y~~ 140 (306)
.++.+|.||-+ .++.+.--|+ |. --|=+.|.+-=++. ++..|..|+++|..
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~---fPvCr~CyEYErke-g~q~CpqCkt~ykr 63 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECA---FPVCRPCYEYERKE-GNQVCPQCKTRYKR 63 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS--------HHHHHHHHHT-S-SB-TTT--B---
T ss_pred cCCcccccccCccccCCCCCEEEEEcccC---CccchhHHHHHhhc-CcccccccCCCccc
Confidence 46789999962 3444443343 32 34778898765544 67789999999985
No 58
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=30.42 E-value=26 Score=19.84 Aligned_cols=12 Identities=33% Similarity=0.819 Sum_probs=8.1
Q ss_pred ccCCCCceeeee
Q psy3674 130 CCEICNFKYKFK 141 (306)
Q Consensus 130 ~CELCk~~Y~~~ 141 (306)
.|++|+..|...
T Consensus 2 ~C~~C~~~~~~~ 13 (24)
T PF13894_consen 2 QCPICGKSFRSK 13 (24)
T ss_dssp E-SSTS-EESSH
T ss_pred CCcCCCCcCCcH
Confidence 599999999754
No 59
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=30.10 E-value=61 Score=29.47 Aligned_cols=37 Identities=24% Similarity=0.520 Sum_probs=24.6
Q ss_pred CCeeeEecc-CCCCcc----------ccccccCCCccccHHHHHHHHHhc
Q psy3674 88 APVCRICHG-SHENLK----------ALCECRGTMGLVHAECLTQWLSES 126 (306)
Q Consensus 88 ~~~CRIC~g-e~~~LI----------sPC~CkGSl~~VH~~CL~~Wl~~s 126 (306)
+..|-||.+ +.+..+ .|=-|.. .|-|..||+|..+..
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~T--s~rhSNCLdqfkka~ 49 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDT--SYRHSNCLDQFKKAY 49 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCC--ccchhHHHHHHHHHh
Confidence 467999985 333322 2323653 688999999998764
No 60
>PF11872 DUF3392: Protein of unknown function (DUF3392); InterPro: IPR021813 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.
Probab=28.91 E-value=93 Score=26.38 Aligned_cols=35 Identities=23% Similarity=0.449 Sum_probs=28.6
Q ss_pred chhHHHHHHHHH-HHHHHHHHHHHHHHHHhhcchhe
Q psy3674 247 GKYFKNMRTQVL-SQLVWYYDMLFMIVRAYFENWHF 281 (306)
Q Consensus 247 ~~~~~~m~~~~~-~~l~~y~~~~~~~~~~~~~~~~~ 281 (306)
.||.+.+.+++. -.||+|=+-+-..+|+++.+|+|
T Consensus 15 rp~l~eIs~AlvA~lLVv~G~~IN~~lrr~l~~~~F 50 (106)
T PF11872_consen 15 RPYLSEISLALVACLLVVYGDDINRFLRRLLSGYHF 50 (106)
T ss_pred HHhHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCcc
Confidence 578888888888 45666777788899999999987
No 61
>KOG0287|consensus
Probab=28.79 E-value=23 Score=35.96 Aligned_cols=53 Identities=17% Similarity=0.371 Sum_probs=38.6
Q ss_pred CeeeEecc-CCCCccccccccCCCccccHHHHHHHHHhcCCcccCCCCceeeeeeeccchh
Q psy3674 89 PVCRICHG-SHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRTLKRPL 148 (306)
Q Consensus 89 ~~CRIC~g-e~~~LIsPC~CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y~~~~~~k~~i 148 (306)
-.|-||++ -.-|++.||. .-.-.-|++..+.. ...|+.|..+++-..++...+
T Consensus 24 LRC~IC~eyf~ip~itpCs-----HtfCSlCIR~~L~~--~p~CP~C~~~~~Es~Lr~n~i 77 (442)
T KOG0287|consen 24 LRCGICFEYFNIPMITPCS-----HTFCSLCIRKFLSY--KPQCPTCCVTVTESDLRNNRI 77 (442)
T ss_pred HHHhHHHHHhcCceecccc-----chHHHHHHHHHhcc--CCCCCceecccchhhhhhhhH
Confidence 36999997 5679999974 22334687877755 478999999998766665443
No 62
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=28.18 E-value=27 Score=24.16 Aligned_cols=39 Identities=23% Similarity=0.548 Sum_probs=24.3
Q ss_pred eeEecc-CCCCccccccccCCCccccHHHHHHHHHhcCC--cccCCC
Q psy3674 91 CRICHG-SHENLKALCECRGTMGLVHAECLTQWLSESGR--SCCEIC 134 (306)
Q Consensus 91 CRIC~g-e~~~LIsPC~CkGSl~~VH~~CL~~Wl~~s~~--~~CELC 134 (306)
|-||++ -.+|...+|. .-.=+.||.+|.+..+. ..|.+|
T Consensus 1 CpiC~~~~~~Pv~l~CG-----H~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCG-----HSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSS-----SEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCc-----CHHHHHHHHHHHHccCCcCCCCcCC
Confidence 557775 4677777774 33556899999987654 478887
No 63
>KOG4445|consensus
Probab=25.79 E-value=63 Score=32.42 Aligned_cols=50 Identities=28% Similarity=0.643 Sum_probs=35.1
Q ss_pred CCCeeeEec-c--C-CCCccccccccCCCccccHHHHHHHHHhc---------------------CCcccCCCCceeeee
Q psy3674 87 NAPVCRICH-G--S-HENLKALCECRGTMGLVHAECLTQWLSES---------------------GRSCCEICNFKYKFK 141 (306)
Q Consensus 87 ~~~~CRIC~-g--e-~~~LIsPC~CkGSl~~VH~~CL~~Wl~~s---------------------~~~~CELCk~~Y~~~ 141 (306)
..-.|-||+ | + +.-.+++|. .|.|-.||.+.|..- -...|.+|.++....
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~-----Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACD-----HYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 344788887 4 2 334468874 899999999888652 145699999887764
No 64
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=24.76 E-value=33 Score=22.01 Aligned_cols=13 Identities=15% Similarity=0.813 Sum_probs=10.3
Q ss_pred CCcccCCCCceee
Q psy3674 127 GRSCCEICNFKYK 139 (306)
Q Consensus 127 ~~~~CELCk~~Y~ 139 (306)
....|+.|||.|.
T Consensus 13 ~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 13 SAKFCPHCGYDFE 25 (26)
T ss_pred hcCcCCCCCCCCc
Confidence 3568999999885
No 65
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=24.23 E-value=82 Score=32.30 Aligned_cols=55 Identities=20% Similarity=0.449 Sum_probs=36.4
Q ss_pred CCCCCCCCCeeeEeccC-CCCccccccccCCCccccHHHHHHHHHhcCCcccCCCCceeee
Q psy3674 81 GSEHDENAPVCRICHGS-HENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKF 140 (306)
Q Consensus 81 ~S~~s~~~~~CRIC~ge-~~~LIsPC~CkGSl~~VH~~CL~~Wl~~s~~~~CELCk~~Y~~ 140 (306)
..+.+++...|-||-+. .-.-+.||+=+ .-..|--+-..-=.+..|.+|+++-..
T Consensus 54 addtDEen~~C~ICA~~~TYs~~~PC~H~-----~CH~Ca~RlRALY~~K~C~~CrTE~e~ 109 (493)
T COG5236 54 ADDTDEENMNCQICAGSTTYSARYPCGHQ-----ICHACAVRLRALYMQKGCPLCRTETEA 109 (493)
T ss_pred ccccccccceeEEecCCceEEEeccCCch-----HHHHHHHHHHHHHhccCCCccccccce
Confidence 44557788899999753 33447888722 222355555555567889999998764
No 66
>KOG3899|consensus
Probab=22.51 E-value=56 Score=32.71 Aligned_cols=36 Identities=28% Similarity=0.647 Sum_probs=27.0
Q ss_pred ccccCCCccccHHHHHHHHHhc-----------CCcccCCCCceeeeeee
Q psy3674 105 CECRGTMGLVHAECLTQWLSES-----------GRSCCEICNFKYKFKRT 143 (306)
Q Consensus 105 C~CkGSl~~VH~~CL~~Wl~~s-----------~~~~CELCk~~Y~~~~~ 143 (306)
|-|+ -.--++||.+|+..+ ++..|+.|+..|-+..+
T Consensus 323 c~cr---p~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv 369 (381)
T KOG3899|consen 323 CICR---PLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV 369 (381)
T ss_pred cccc---cHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence 4565 345678999999654 47799999999987543
No 67
>KOG0956|consensus
Probab=20.23 E-value=51 Score=36.31 Aligned_cols=53 Identities=30% Similarity=0.661 Sum_probs=35.3
Q ss_pred eeeEeccC----CCCccccccccCCC--ccccHHHH-------HHHHHhc-------CCcccCCCCceee-eeeecc
Q psy3674 90 VCRICHGS----HENLKALCECRGTM--GLVHAECL-------TQWLSES-------GRSCCEICNFKYK-FKRTLK 145 (306)
Q Consensus 90 ~CRIC~ge----~~~LIsPC~CkGSl--~~VH~~CL-------~~Wl~~s-------~~~~CELCk~~Y~-~~~~~k 145 (306)
-|-.|-+| ++||+. |+|-- -.|||.|- -.|+-.+ -..+||||-+++- ++++..
T Consensus 7 GCCVCSDErGWaeNPLVY---CDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn 80 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVY---CDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDN 80 (900)
T ss_pred ceeeecCcCCCccCceee---ecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccC
Confidence 48888743 788873 44432 46999996 3577332 2579999999886 354433
Done!