RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3674
(306 letters)
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 50.2 bits (119), Expect = 3e-09
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 85 DENAPVCRICHGSHENLKALC-ECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFK 141
DE+ PVC IC+ N + C G + VH CL+ WL+ S + C+IC Y +
Sbjct: 3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNTR 60
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 31.6 bits (71), Expect = 0.019
Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 82 SEHDENAPVCRICHGSHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFK 141
+ + C+ S + + H C+++WL C + N +++F+
Sbjct: 29 NHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--QVCPLDNREWEFQ 86
Query: 142 R 142
+
Sbjct: 87 K 87
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 71
Score = 31.1 bits (70), Expect = 0.021
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 85 DENAPVCRICHGSHENLKALCECRG-TMGLVHAECLTQWLSESGRSCCEIC 134
D N P +C+ C+ + H C++ G+ C C
Sbjct: 12 DPNEPTYCLCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKC 62
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 31.7 bits (71), Expect = 0.029
Identities = 7/52 (13%), Positives = 12/52 (23%), Gaps = 3/52 (5%)
Query: 83 EHDENAPVCRICHGSHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEIC 134
+ E C C L C + C++ + C
Sbjct: 17 DRLEKLLRCSRCTNILREPVCLGGCEHIF---CSNCVSDCIGTGCPVCYTPA 65
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 29.1 bits (65), Expect = 0.090
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 86 ENAPVCRICHGSHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEIC 134
++ C +C E+ + HAEC+ WL S C +C
Sbjct: 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH--STCPLC 49
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 29.6 bits (66), Expect = 0.096
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 76 EIDEIGSEHDENAPVCRICHGSHENLKALCECRGTMGLVHAECLTQWLSESGRSC 130
E E+ E +C+IC + +++K C M CLT W G+ C
Sbjct: 11 EQYELYCEMGSTFQLCKICAENDKDVKIEP-CGHLM---CTSCLTSWQESEGQGC 61
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 28.0 bits (62), Expect = 0.21
Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 85 DENAPVCRICHGSHENLKALCECRGTMGLVHAECLTQWLSE--SGRSCCEIC 134
D + CR+C E L C H CL L E +G C C
Sbjct: 6 DHHMEFCRVCKDGGE----LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRC 53
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 26.8 bits (59), Expect = 0.64
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
Query: 91 CRICHGSHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYK 139
C IC N C C+T+W+ ++ C +C +
Sbjct: 8 CPICLEDPSNYSMALPCLHAF---CYVCITRWIRQN--PTCPLCKVPVE 51
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 28.1 bits (61), Expect = 0.65
Identities = 12/86 (13%), Positives = 22/86 (25%), Gaps = 14/86 (16%)
Query: 71 QLLEGEIDEIGSEHDENAPVCRICHGSHENLKALCECRGTMG-----------LVHAECL 119
Q++ +E+ +E+ +C + + + H CL
Sbjct: 11 QVIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCL 70
Query: 120 TQWLSES---GRSCCEICNFKYKFKR 142
G C C Y K
Sbjct: 71 LAMYCNGNKDGSLQCPSCKTIYGEKT 96
>d1y0pa1 a.138.1.3 (A:1-102) Flavocytochrome c3 (respiratory
fumarate reductase), N-terminal domain {Shewanella
frigidimarina [TaxId: 56812]}
Length = 102
Score = 27.5 bits (60), Expect = 0.76
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 84 HDENAPVCRICHGSHENLKALC 105
H C CH +HE C
Sbjct: 61 HFPGEVACTSCHSAHEKSMVYC 82
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription
factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 26.1 bits (57), Expect = 0.81
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 91 CRICHGSHENLKALCECRGTMGLVHAECLTQWLSE--SGRSCCEIC 134
C++C E+ K + C H CL L E G C C
Sbjct: 3 CKVCRKKGEDDKLIL-CDECNKAFHLFCLRPALYEVPDGEWQCPAC 47
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 26.1 bits (57), Expect = 1.3
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 85 DENAPVCRICHGSHENLKALCECRGTMGLVHAECLTQWLSE--SGRSCCEIC 134
D++A +CR+C + L C H +C L + C +C
Sbjct: 4 DDSATICRVCQKPGD----LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 51
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 79
Score = 25.4 bits (55), Expect = 2.7
Identities = 12/69 (17%), Positives = 19/69 (27%), Gaps = 4/69 (5%)
Query: 81 GSEHDENAPVCRICHGSHENLKALCECRGTMGLVHAECLTQWLSES---GRSCCEICNFK 137
GS PV +C + + EC H C+ + C C
Sbjct: 4 GSSGMALVPVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63
Query: 138 YKFKRTLKR 146
+ +K
Sbjct: 64 FG-PSIMKN 71
>d1d4ca1 a.138.1.3 (A:1-102) Flavocytochrome c3 (respiratory
fumarate reductase), N-terminal domain {Shewanella
putrefaciens [TaxId: 24]}
Length = 102
Score = 25.2 bits (54), Expect = 4.6
Identities = 8/22 (36%), Positives = 8/22 (36%)
Query: 84 HDENAPVCRICHGSHENLKALC 105
H C CH HE A C
Sbjct: 63 HLIGEIACTSCHKGHEKSVAYC 84
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 24.7 bits (53), Expect = 5.0
Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 4/66 (6%)
Query: 91 CRICHGSHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYKFKRTLKRPLWE 150
C I ++ + T + +WL ++C + T L
Sbjct: 11 CPISLELMKDPVIVS-TGQTY---ERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKS 66
Query: 151 TMAGWL 156
+A W
Sbjct: 67 LIALWC 72
>d1n7oa1 a.102.3.2 (A:170-540) Hyaluronate lyase {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 371
Score = 26.0 bits (57), Expect = 5.7
Identities = 7/40 (17%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 247 GKYFKN--MRTQVLSQLVWYYDMLFMIVRAYFENWHFYYI 284
+Y+++ + V + W + ++ ++ NW Y I
Sbjct: 88 SRYYQDETVVRTVRDSMEWMHKHVYNSEKSIVGNWWDYEI 127
>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 729
Score = 26.3 bits (58), Expect = 6.1
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 238 PISITPIYEGKYFKNMRTQVLSQLVWYYDMLFMIVRAYFENWHFYYIRDHDIEIIFPERP 297
PI+ P +EG+ + + + ++ F +VR E+ I D IE+I P+
Sbjct: 321 PINFGPAFEGESIR--KGDMYVEMGGNRTPAFELVRTVSES----EITDGKIEVIGPDID 374
Query: 298 EITDGPSH 305
+I +G
Sbjct: 375 QIPEGSKL 382
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 23.5 bits (50), Expect = 8.9
Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 4/51 (7%)
Query: 89 PVCRICHGSHENLKALCECRGTMGLVHAECLTQWLSESGRSCCEICNFKYK 139
P+C + C C + C + ++ C C Y
Sbjct: 4 PLCMEPLEIDDINFFPCTCGYQI---CRFCWHRIRTDENGLCP-ACRKPYP 50
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 72
Score = 23.8 bits (51), Expect = 9.0
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 3/57 (5%)
Query: 81 GSEHDENAPVCR-ICHGSHENLKALCECRGTMGLVHAECL--TQWLSESGRSCCEIC 134
G E + C ++ + + C G H C+ + + C C
Sbjct: 7 GMERGVDNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRC 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.433
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,194,804
Number of extensions: 55674
Number of successful extensions: 246
Number of sequences better than 10.0: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 30
Length of query: 306
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,240,546
Effective search space: 274160666
Effective search space used: 274160666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.7 bits)