BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy368
(320 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FPF|A Chain A, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|B Chain B, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|C Chain C, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|D Chain D, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
Length = 71
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 24/82 (29%)
Query: 81 EATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPW 140
E THR++ +F+PRH DE+ELE+ DP+ V +AED W E
Sbjct: 6 EQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEA--------------------- 44
Query: 141 MLRVNLRTGRQGIFPSAYAVDV 162
N+RTG +G+FP+ YA++V
Sbjct: 45 ---YNMRTGARGVFPAYYAIEV 63
>pdb|2FPD|A Chain A, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|B Chain B, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|C Chain C, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|D Chain D, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPE|A Chain A, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|B Chain B, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|C Chain C, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|D Chain D, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|E Chain E, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|F Chain F, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|G Chain G, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|H Chain H, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
Length = 62
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 24/82 (29%)
Query: 81 EATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPW 140
E THR++ +F+PRH DE+ELE+ DP+ V +AED W E
Sbjct: 3 EQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEA--------------------- 41
Query: 141 MLRVNLRTGRQGIFPSAYAVDV 162
N RTG +G+FP+ YA++V
Sbjct: 42 ---YNXRTGARGVFPAYYAIEV 60
>pdb|2NMB|A Chain A, Dnumb Ptb Domain Complexed With A Phosphotyrosine Peptide,
Nmr, Ensemble Of Structures
Length = 160
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 8/126 (6%)
Query: 179 FLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPHSCILEVSDEGLRMVEKSRPGQHRKV 238
F + YLG VE +G V +A+ +RQ++ RP +L VS +GLR+V+ +
Sbjct: 32 FSVKYLGCVEVFESRGMQVCEEALKVLRQSRRRPVRGLLHVSGDGLRVVDD-------ET 84
Query: 239 RGLDYFYSLKNVMFCGFHPREPCYLGFISKHPNMQRFACHVFLAS-ESTRPVAEAVGRAF 297
+GL +++ V FC +I + +R+ CH FLA +S ++ AVG AF
Sbjct: 85 KGLIVDQTIEKVSFCAPDRNHERGFSYICRDGTTRRWMCHGFLACKDSGERLSHAVGCAF 144
Query: 298 QRFYEK 303
E+
Sbjct: 145 AVCLER 150
>pdb|1DDM|A Chain A, Solution Structure Of The Numb Ptb Domain Complexed To A
Nak Peptide
Length = 135
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 8/126 (6%)
Query: 179 FLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPHSCILEVSDEGLRMVEKSRPGQHRKV 238
F + YLG VE +G V +A+ +RQ++ RP +L VS +GLR+V+ +
Sbjct: 17 FSVKYLGCVEVFESRGMQVCEEALKVLRQSRRRPVRGLLHVSGDGLRVVDD-------ET 69
Query: 239 RGLDYFYSLKNVMFCGFHPREPCYLGFISKHPNMQRFACHVFLAS-ESTRPVAEAVGRAF 297
+GL +++ V FC +I + +R+ CH FLA +S ++ AVG AF
Sbjct: 70 KGLIVDQTIEKVSFCAPDRNHERGFSYICRDGTTRRWMCHGFLACKDSGERLSHAVGCAF 129
Query: 298 QRFYEK 303
E+
Sbjct: 130 AVCLER 135
>pdb|1WJ1|A Chain A, Solution Structure Of Phosphotyrosine Interaction Domain
Of Mouse Numb Protein
Length = 156
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 179 FLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPHSCILEVSDEGLRMVEKSRPGQHRKV 238
F + YLG VE +G + AV +++ T + +L VS +GLR+V++ K
Sbjct: 28 FPVKYLGHVEVDESRGMHICEDAVKRLKATGKKAVKAVLWVSADGLRVVDE-------KT 80
Query: 239 RGLDYFYSLKNVMFCGFHPREPCYLGFISKHPNMQRFACHVFLASEST-RPVAEAVGRAF 297
+ L +++ V FC +I + +R+ CH F+A + T ++ AVG AF
Sbjct: 81 KDLIVDQTIEKVSFCAPDRNFDRAFSYICRDGTTRRWICHCFMAVKDTGERLSHAVGCAF 140
Query: 298 QRFYEK 303
E+
Sbjct: 141 AACLER 146
>pdb|3F0W|A Chain A, Human Numb-Like Protein, Phosphotyrosine Interaction
Domain
Length = 168
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 179 FLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPHSCILEVSDEGLRMVEKSRPGQHRKV 238
F + YLG VE +G V AV K++ + +L VS +GLR+V+ K
Sbjct: 44 FPVRYLGHVEVEESRGMHVCEDAVKKLKAMGRKSVKSVLWVSADGLRVVDD-------KT 96
Query: 239 RGLDYFYSLKNVMFCGFHPREPCYLGFISKHPNMQRFACHVFLA-SESTRPVAEAVGRAF 297
+ L +++ V FC +I + +R+ CH FLA +S ++ AVG AF
Sbjct: 97 KDLLVDQTIEKVSFCAPDRNLDKAFSYICRDGTTRRWICHCFLALKDSGERLSHAVGCAF 156
Query: 298 QRFYEK 303
E+
Sbjct: 157 AACLER 162
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKE------STYV---------PV 129
R+L+ F PR DE+ +E GD IY+++ ++ W +G +K S YV P+
Sbjct: 18 RALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPL 77
Query: 130 VKASSRLPTPWMLR-VNLRTGRQGI 153
+A+ R W+ ++ R G G+
Sbjct: 78 HEAAKRGNLSWLRECLDNRVGVNGL 102
>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3 Domain
From Human Cd2ap (Cms) In Complex With A Proline-Rich
Peptide From Human Rin3
Length = 65
Score = 35.4 bits (80), Expect = 0.038, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEG 119
+ L ++IP++ DE+EL++GD I ++ E E+ W G
Sbjct: 11 KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSG 45
>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms
Protein
Length = 65
Score = 35.4 bits (80), Expect = 0.038, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEG 119
+ L ++IP++ DE+EL++GD I ++ E E+ W G
Sbjct: 5 KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSG 39
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 35.4 bits (80), Expect = 0.046, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKEST 125
R+L+ F PR DE+ E GD IY+++ ++ W +G +K T
Sbjct: 7 RALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRT 47
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 35.0 bits (79), Expect = 0.063, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKEST 125
R+L+ F PR DE+ E GD IY+++ ++ W +G +K T
Sbjct: 11 RALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRT 51
>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase
Binding Protein 1
Length = 68
Score = 34.7 bits (78), Expect = 0.064, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 90 FIPRHFDEVELEIGDPIYVSNEAEDLWCEG 119
++P++ DE+EL++GD I V E E+ W EG
Sbjct: 16 YLPQNDDELELKVGDIIEVVGEVEEGWWEG 45
>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein
Length = 92
Score = 34.7 bits (78), Expect = 0.064, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 90 FIPRHFDEVELEIGDPIYVSNEAEDLWCEG 119
++P++ DE+EL++GD I V E E+ W EG
Sbjct: 27 YLPQNDDELELKVGDIIEVVGEVEEGWWEG 56
>pdb|2CUC|A Chain A, Solution Structure Of The Sh3 Domain Of The Mouse
Hypothetical Protein Sh3rf2
Length = 70
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 24/77 (31%)
Query: 86 SLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRVN 145
+LH + +E++L+ G+ I V + +D W +G ++
Sbjct: 12 ALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKG------------------------LS 47
Query: 146 LRTGRQGIFPSAYAVDV 162
L TGR GIFPS Y + V
Sbjct: 48 LLTGRTGIFPSDYVIPV 64
>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl
Length = 65
Score = 33.1 bits (74), Expect = 0.22, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 28/42 (66%)
Query: 83 THRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKES 124
++++L+ +IP++ DE+EL GD + V + +D W G ++ +
Sbjct: 8 SYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRT 49
>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr
Length = 64
Score = 33.1 bits (74), Expect = 0.23, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 28/42 (66%)
Query: 83 THRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKES 124
++++L+ +IP++ DE+EL GD + V + +D W G ++ +
Sbjct: 8 SYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRT 49
>pdb|2Q18|X Chain X, 2-Keto-3-Deoxy-D-Arabinonate Dehydratase
pdb|2Q19|X Chain X, 2-keto-3-deoxy-d-arabinonate Dehydratase Apo Form
pdb|2Q1A|X Chain X, 2-Keto-3-Deoxy-D-Arabinonate Dehydratase Complexed With
Magnesium And 2-Oxobutyrate
pdb|2Q1C|X Chain X, 2-Keto-3-Deoxy-D-Arabinonate Dehydratase Complexed With
Calcium And 2- Oxobutyrate
pdb|2Q1D|X Chain X, 2-Keto-3-Deoxy-D-Arabinonate Dehydratase Complexed With
Magnesium And 2,5-Dioxopentanoate
pdb|3BQB|A Chain A, Hexagonal Kristal Form Of 2-Keto-3-Deoxyarabinonate
Dehydratase
pdb|3BQB|X Chain X, Hexagonal Kristal Form Of 2-Keto-3-Deoxyarabinonate
Dehydratase
pdb|3BQB|Z Chain Z, Hexagonal Kristal Form Of 2-Keto-3-Deoxyarabinonate
Dehydratase
pdb|3BQB|Y Chain Y, Hexagonal Kristal Form Of 2-Keto-3-Deoxyarabinonate
Dehydratase
Length = 293
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 58 HDSTISSRSASPVTLPPSKLEL-LEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLW 116
H I+ RS S TLP +L + L++ + L I +LE +P+Y+
Sbjct: 127 HGEAIAVRSDSEWTLPEPELAVVLDSNGKILGYTIMDDVSARDLEAENPLYLPQSKIYAG 186
Query: 117 CEGKAKESTYVPVVKASSRLPTPWMLRVNLRTGRQG 152
C + PV+ S + P+ L + L+ R+G
Sbjct: 187 C------CAFGPVIVTSDEIKNPYSLDITLKIVREG 216
>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein
Length = 68
Score = 32.0 bits (71), Expect = 0.46, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 28/41 (68%)
Query: 83 THRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKE 123
T+ +L+KF+P+ +++E+ GD I + ++ + W +GK ++
Sbjct: 9 TYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQD 49
>pdb|2CT3|A Chain A, Solution Structure Of The Sh3 Domain Of The Vinexin
Protein
Length = 70
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 27/41 (65%)
Query: 84 HRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKES 124
+R+++++ P++ DE+EL GD + V + +D W G ++ +
Sbjct: 10 YRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRT 50
>pdb|4GLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|B Chain B, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|C Chain C, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|D Chain D, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
Length = 72
Score = 30.4 bits (67), Expect = 1.2, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 86 SLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKEST 125
+L++F +E++ E+GD I + ED W EG K T
Sbjct: 18 ALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRT 57
>pdb|2YSZ|A Chain A, Solution Structure Of The Chimera Of The C-Terminal Pid
Domain Of Fe65l And The C-Terminal Tail Peptide Of App
Length = 185
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 19/136 (13%)
Query: 169 TTTPKPKRE---RFLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPH--SCILEVSDEG 223
++ P PK E +F + YLG + G + A+ + + + S + V+D
Sbjct: 5 SSGPTPKTELVQKFRVQYLGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADAT 64
Query: 224 LRMVEKSRPGQ---HRKVRGLDYFYSLKNVMFCGFHPREPCYLGFISKHPNMQRFACHVF 280
+ ++ + + +VR L + K+V FI N QRF CHVF
Sbjct: 65 VTVISEKNEEEVLVECRVRFLSFMGVGKDVH----------TFAFIMDTGN-QRFECHVF 113
Query: 281 LASESTRPVAEAVGRA 296
+ V+EAV A
Sbjct: 114 WCEPNAANVSEAVQAA 129
>pdb|2M38|A Chain A, Ptb Domain Of Aida1
Length = 153
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 54/131 (41%), Gaps = 18/131 (13%)
Query: 182 GYLGSVETSAHKGNAVICQAVHKIR--------QTQHRPHSCILEVSDEGLRMVEKSRPG 233
YLGS+ +G A K+R Q + P + IL VS +G++ ++ +
Sbjct: 24 AYLGSMLIKELRGTESTQDACAKMRANCQKSTEQMKKVP-TIILSVSAKGVKFIDATN-- 80
Query: 234 QHRKVRGLDYFYSLKNVMFCGFHPREPCYLGFISKHPNMQRFACHVFLASESTRP--VAE 291
+ + + ++N+ P + +I+K CHVF A + +
Sbjct: 81 -----KNIIAEHEIRNISCAAQDPEDLSTFAYITKDLKSNHHYCHVFTAFDVNLAAEIIL 135
Query: 292 AVGRAFQRFYE 302
+G+AF+ Y+
Sbjct: 136 TLGQAFEVAYQ 146
>pdb|1WGU|A Chain A, Solution Structure Of The C-Terminal Phosphotyrosine
Interaction Domain Of Apbb2 From Mouse
pdb|2ROZ|B Chain B, Structure Of The C-Terminal Pid Domain Of Fe65l1 Complexed
With The Cytoplasmic Tail Of App Reveals A Novel Peptide
Binding Mode
Length = 136
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 19/136 (13%)
Query: 169 TTTPKPKRE---RFLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPH--SCILEVSDEG 223
++ P PK E +F + YLG + G + A+ + + + S + V+D
Sbjct: 5 SSGPTPKTELVQKFRVQYLGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADAT 64
Query: 224 LRMVEKSRPGQ---HRKVRGLDYFYSLKNVMFCGFHPREPCYLGFISKHPNMQRFACHVF 280
+ ++ + + +VR L + K+V FI N QRF CHVF
Sbjct: 65 VTVISEKNEEEVLVECRVRFLSFMGVGKDVH----------TFAFIMDTGN-QRFECHVF 113
Query: 281 LASESTRPVAEAVGRA 296
+ V+EAV A
Sbjct: 114 WCEPNAANVSEAVQAA 129
>pdb|2YT0|A Chain A, Solution Structure Of The Chimera Of The C-Terminal Tail
Peptide Of App And The C-Terminal Pid Domain Of Fe65l
Length = 176
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 19/133 (14%)
Query: 172 PKPKRE---RFLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPH--SCILEVSDEGLRM 226
P PK E +F + YLG + G + A+ + + + S + V+D + +
Sbjct: 54 PTPKTELVQKFRVQYLGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADATVTV 113
Query: 227 VEKSRPGQ---HRKVRGLDYFYSLKNVMFCGFHPREPCYLGFISKHPNMQRFACHVFLAS 283
+ + + +VR L + K+V FI N QRF CHVF
Sbjct: 114 ISEKNEEEVLVECRVRFLSFMGVGKDVH----------TFAFIMDTGN-QRFECHVFWCE 162
Query: 284 ESTRPVAEAVGRA 296
+ V+EAV A
Sbjct: 163 PNAANVSEAVQAA 175
>pdb|1X27|A Chain A, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|B Chain B, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|C Chain C, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|D Chain D, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|E Chain E, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|F Chain F, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
Length = 167
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 11/66 (16%)
Query: 86 SLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKEST-----YVP---VVKASSRLP 137
+LH + P H ++ E G+ + + ++ + W KA+ T ++P V KA+S P
Sbjct: 9 ALHSYEPSHDGDLGFEKGEQLRILEQSGEWW---KAQSLTTGQEGFIPFNFVAKANSLEP 65
Query: 138 TPWMLR 143
PW +
Sbjct: 66 EPWFFK 71
>pdb|2YT1|A Chain A, Solution Structure Of The Chimera Of The C-Terminal Tail
Peptide Of App And The C-Terminal Pid Domain Of Fe65l
Length = 185
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 19/133 (14%)
Query: 172 PKPKRE---RFLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPH--SCILEVSDEGLRM 226
P PK E +F + YLG + G + A+ + + + S + V+D + +
Sbjct: 63 PTPKTELVQKFRVQYLGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADATVTV 122
Query: 227 VEKSRPGQ---HRKVRGLDYFYSLKNVMFCGFHPREPCYLGFISKHPNMQRFACHVFLAS 283
+ + + +VR L + K+V FI N QRF CHVF
Sbjct: 123 ISEKNEEEVLVECRVRFLSFMGVGKDVH----------TFAFIMDTGN-QRFECHVFWCE 171
Query: 284 ESTRPVAEAVGRA 296
+ V+EAV A
Sbjct: 172 PNAANVSEAVQAA 184
>pdb|4D8K|A Chain A, Crystal Structure Of A Sh3-Sh2 Domains Of A
Lymphocyte-Specific Protein Tyrosine Kinase (Lck) From
Homo Sapiens At 2.36 A Resolution
Length = 175
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 11/66 (16%)
Query: 86 SLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKEST-----YVP---VVKASSRLP 137
+LH + P H ++ E G+ + + ++ + W KA+ T ++P V KA+S P
Sbjct: 17 ALHSYEPSHDGDLGFEKGEQLRILEQSGEWW---KAQSLTTGQEGFIPFNFVAKANSLEP 73
Query: 138 TPWMLR 143
PW +
Sbjct: 74 EPWFFK 79
>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of
Cd2ap
Length = 60
Score = 30.0 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEG 119
+ L + P++ DE+EL +GD I V E E+ W G
Sbjct: 8 KVLFDYSPQNEDELELIVGDVIDVIEEVEEGWWSG 42
>pdb|3F6C|A Chain A, Crystal Structure Of N-Terminal Domain Of Positive
Transcription Regulator Evga From Escherichia Coli
pdb|3F6C|B Chain B, Crystal Structure Of N-Terminal Domain Of Positive
Transcription Regulator Evga From Escherichia Coli
Length = 134
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 30/74 (40%)
Query: 206 RQTQHRPHSCILEVSDEGLRMVEKSRPGQHRKVRGLDYFYSLKNVMFCGFHPREPCYLGF 265
R +P I++V G+ ++ + R+ G+ S KN F G H + GF
Sbjct: 41 RVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGF 100
Query: 266 ISKHPNMQRFACHV 279
+SK M +
Sbjct: 101 VSKKEGMNNIIAAI 114
>pdb|1LCK|A Chain A, Sh3-Sh2 Domain Fragment Of Human P56-Lck Tyrosine Kinase
Complexed With The 10 Residue Synthetic Phosphotyrosyl
Peptide Tegqpyqpqpa
Length = 175
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 11/66 (16%)
Query: 86 SLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKEST-----YVP---VVKASSRLP 137
+LH + P H ++ E G+ + + ++ + W KA+ T ++P V KA+S P
Sbjct: 17 ALHSYEPSHDGDLGFEKGEQLRILEQSGEWW---KAQSLTTGQEGFIPFNFVAKANSLEP 73
Query: 138 TPWMLR 143
PW +
Sbjct: 74 EPWFFK 79
>pdb|2VE7|A Chain A, Crystal Structure Of A Bonsai Version Of The Human Ndc80
Complex
pdb|2VE7|B Chain B, Crystal Structure Of A Bonsai Version Of The Human Ndc80
Complex
pdb|3IZ0|C Chain C, Human Ndc80 Bonsai Decorated Microtubule
pdb|3IZ0|E Chain E, Human Ndc80 Bonsai Decorated Microtubule
Length = 315
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 22 DLSPWSQETDSTIDSD------TERYYPSIDSGLSLVSHHNLHDSTISSRSASPVTLPPS 75
D PW +ET+ I + T + Y S SG N + + S+ +
Sbjct: 129 DGQPWGEETEDGIMHNKLFLDYTIKCYESFMSGADSFDEMN---AELQSKLKDLFNVDAF 185
Query: 76 KLELLEATHRSLHKFIPR 93
KLE LEA +R+L++ I R
Sbjct: 186 KLESLEAKNRALNEQIAR 203
>pdb|1OWA|A Chain A, Solution Structural Studies On Human Erythrocyte Alpha
Spectrin N Terminal Tetramerization Domain
Length = 156
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 120 KAKESTYVPVVKASSRLPTPWML-RVNLRTGR--------QGIFPSAYAVDVEYED---L 167
K ++S ++ V K + W++ +VN+ T + QG + +++ E + L
Sbjct: 48 KLEDSYHLQVFKRDADDLGKWIMEKVNILTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRL 107
Query: 168 QTTTPKPKRERFLLGYLGSVETSAH 192
+ K + ERF +G+ ET AH
Sbjct: 108 MSELEKTREERFTMGHSAHEETKAH 132
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline-
Serine-Threonine Phosphatase-Interacting Protein 1
Length = 69
Score = 28.1 bits (61), Expect = 7.5, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 84 HRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLW 116
+R+L+ + ++ DE++L GD + V E ED W
Sbjct: 11 YRALYDYTAQNPDELDLSAGDILEVILEGEDGW 43
>pdb|3LBX|A Chain A, Crystal Structure Of The Erythrocyte Spectrin
Tetramerization Domain Complex
Length = 161
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 120 KAKESTYVPVVKASSRLPTPWML-RVNLRTGR--------QGIFPSAYAVDVEYED---L 167
K ++S ++ V K + W++ +VN+ T + QG + +++ E + L
Sbjct: 51 KLEDSYHLQVFKRDADDLGKWIMEKVNILTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRL 110
Query: 168 QTTTPKPKRERFLLGYLGSVETSAH 192
+ K + ERF +G+ ET AH
Sbjct: 111 MSELEKTREERFTMGHSAHEETKAH 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,691,502
Number of Sequences: 62578
Number of extensions: 397711
Number of successful extensions: 992
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 959
Number of HSP's gapped (non-prelim): 47
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)