RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy368
(320 letters)
>3f0w_A NUMB-R, NUMB-like protein; PH domain-like, PID domain,
phosphoprotein, signaling protei structural genomics,
structural genomics consortium, SGC; 2.70A {Homo
sapiens} PDB: 1wj1_A 2nmb_A* 1ddm_A
Length = 168
Score = 113 bits (284), Expect = 7e-31
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 178 RFLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPHSCILEVSDEGLRMVEKSRPGQHRK 237
F + YLG VE +G V AV K++ + +L VS +GLR+V+ K
Sbjct: 43 SFPVRYLGHVEVEESRGMHVCEDAVKKLKAMGRKSVKSVLWVSADGLRVVD-------DK 95
Query: 238 VRGLDYFYSLKNVMFCGFHPREPCYLGFISKHPNMQRFACHVFLAS-ESTRPVAEAVGRA 296
+ L +++ V FC +I + +R+ CH FLA +S ++ AVG A
Sbjct: 96 TKDLLVDQTIEKVSFCAPDRNLDKAFSYICRDGTTRRWICHCFLALKDSGERLSHAVGCA 155
Query: 297 FQRFYEKF 304
F E+
Sbjct: 156 FAACLERK 163
>2dyq_A Amyloid beta A4 precursor protein-binding family 3;
phosphotyrosine-interaction domain (PTB/PID alzheimer'S
disease, structural genomics, NPPSFA; 3.10A {Homo
sapiens}
Length = 144
Score = 112 bits (281), Expect = 8e-31
Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 9/144 (6%)
Query: 168 QTTTPKPKRE---RFLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPHS--CILEVSDE 222
++ + ++ Y+G++ + G V+ +A+ + R +L VSD
Sbjct: 4 GSSGLDAVSQAAQKYEALYMGTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDS 63
Query: 223 GLRMVEKSRPGQHRKVRGLDYFYSLKNVMFCGFHPREPCYLGFISKHPNMQRFACHVFLA 282
+ + + ++ V F G R+P G I+ Q F C F
Sbjct: 64 LMTAHPIQ--AEASTEEEPLWQCPVRLVTFIGVG-RDPHTFGLIA-DLGRQSFQCAAFWC 119
Query: 283 SESTRPVAEAVGRAFQRFYEKFIE 306
++EAV A Y+K +
Sbjct: 120 QPHAGGLSEAVQAACMVQYQKCLV 143
>3so6_A LDL receptor adaptor protein; PTB, endocytic adaptor, autosomal
reces hypercholesterolemia, ARH, cholesterol; 1.37A
{Rattus norvegicus}
Length = 137
Score = 109 bits (274), Expect = 1e-29
Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 13/139 (9%)
Query: 178 RFLLGYLGSVETSAHKGNAVICQAVHKIRQT----QHRPHSCILEVSDEGLRMVEKSRPG 233
F L YLG KG + AV +I T + L+VS G+ + +
Sbjct: 5 VFSLKYLGMTLVERPKGEELSAAAVKRIVATAKASGKKLQKVTLKVSPRGIILTD----- 59
Query: 234 QHRKVRGLDYFYSLKNVMFCGFHPREPCYLGFISKHPNMQRFACHVFLAS--ESTRPVAE 291
L S+ + +C +I++ + CH FL + + + V
Sbjct: 60 --SLTSQLIENVSIYRISYCTADKMHDKVFAYIAQSQQNESLECHAFLCTKRKVAQAVTL 117
Query: 292 AVGRAFQRFYEKFIETAFP 310
V +AF+ +E + + P
Sbjct: 118 TVAQAFKVAFEFWQVSLVP 136
>3dxe_A Amyloid beta A4 protein-binding family B member 1; alzheimer'S
disease, APP, AICD, Fe65, PTB domain, alternative
splicing, polymorphism, alzheimer disease, apoptosis;
2.00A {Homo sapiens} PDB: 3dxd_A 3dxc_A
Length = 140
Score = 105 bits (264), Expect = 2e-28
Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 12/140 (8%)
Query: 171 TPKP-KRERFLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPHSC--ILEVSDEGLRMV 227
PK ++F + YLG+V + G VI A+ + + R + V+ L ++
Sbjct: 1 APKNELVQKFQVYYLGNVPVAKPVGVDVINGALESVLSSSSREQWTPSHVSVAPATLTIL 60
Query: 228 EKSRPGQHRKVRGLDYFYSLKNVMFCGFHPREPCYLGFISKHPNMQRFACHVFLASESTR 287
++ + ++ + F R+ FI F CH+F +
Sbjct: 61 H-------QQTEAVLGECRVRFLSFLAVG-RDVHTFAFIM-AAGPASFCCHMFWCEPNAA 111
Query: 288 PVAEAVGRAFQRFYEKFIET 307
++EAV A Y+K ++
Sbjct: 112 SLSEAVQAACMLRYQKCLDA 131
>2ej8_A DCC-interacting protein 13 alpha; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 1.84A {Homo sapiens}
Length = 160
Score = 104 bits (261), Expect = 1e-27
Identities = 24/150 (16%), Positives = 58/150 (38%), Gaps = 17/150 (11%)
Query: 179 FLLGYLGSVETSAHKGNAVICQAVHKIRQTQH-----RPHSCILEVSDEGLRMVEKSRPG 233
F++ +LGS+E + V+ + + +I + R L V+ + L++++
Sbjct: 18 FIVRFLGSMEVKSDDHPDVVYETMRQILAARAIHNIFRMTESHLLVTCDCLKLID----- 72
Query: 234 QHRKVRGLDYFYSLKNVMFCGFHPREPCYLGFISKHPNMQ-----RFACHVFLASESTRP 288
+ + + L V+ H GF+ + + + C++F ++
Sbjct: 73 --PQTQVTRLTFPLPCVVLYATHQENKRLFGFVLRTSSGRSESNLSSVCYIFESNNEGEK 130
Query: 289 VAEAVGRAFQRFYEKFIETAFPIEDIYIEE 318
+ ++VG A Q ++ + IE
Sbjct: 131 ICDSVGLAKQIALHAELDRRASEKQKEIER 160
>1p3r_A Disabled homolog 2; PTB, signaling protein; 2.10A {Mus musculus}
SCOP: b.55.1.2 PDB: 1m7e_A
Length = 160
Score = 103 bits (258), Expect = 3e-27
Identities = 13/134 (9%), Positives = 44/134 (32%), Gaps = 16/134 (11%)
Query: 178 RFLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPHS-------CILEVSDEGLRMVEKS 230
++ +G + +G+ + ++ K++ S + +S G+++++
Sbjct: 18 KYKAKLIGIDDVPDARGDKMSQDSMMKLKGMAAAGRSQGQHKQRIWVNISLSGIKIID-- 75
Query: 231 RPGQHRKVRGLDYFYSLKNVMFCGFHPREPCYLGFISKHPNMQRFACHVFLASESTRPVA 290
K +++ + + + F + G++ + + P+
Sbjct: 76 -----EKTGVIEHEHPVNKISFIARDVTDNRAFGYVCGGEG--QHQFFAIKTGQQAEPLV 128
Query: 291 EAVGRAFQRFYEKF 304
+ FQ Y
Sbjct: 129 VDLKDLFQVIYNVK 142
>2ela_A Adapter protein containing PH domain, PTB domain and leucine zipper
motif 1; APPL, cell cycle; 2.00A {Homo sapiens}
Length = 175
Score = 101 bits (252), Expect = 3e-26
Identities = 23/149 (15%), Positives = 57/149 (38%), Gaps = 17/149 (11%)
Query: 169 TTTPKPKRERFLLGYLGSVETSAHKGNAVICQAVHKIRQTQH-----RPHSCILEVSDEG 223
T + F++ +LGS+E + V+ + + +I + R L V+ +
Sbjct: 21 MTEDSILHQLFIVRFLGSMEVKSDDHPDVVYETMRQILAARAIHNIFRMTESHLLVTCDC 80
Query: 224 LRMVEKSRPGQHRKVRGLDYFYSLKNVMFCGFHPREPCYLGFISKHPNMQ-----RFACH 278
L++++ + + + L V+ H GF+ + + + C+
Sbjct: 81 LKLID-------PQTQVTRLTFPLPCVVLYATHQENKRLFGFVLRTSSGRSESNLSSVCY 133
Query: 279 VFLASESTRPVAEAVGRAFQRFYEKFIET 307
+F ++ + ++VG A Q ++
Sbjct: 134 IFESNNEGEKICDSVGLAKQIALHAELDR 162
>1ntv_A Disabled homolog 1; beta-sandwich, signaling protein; 1.50A {Mus
musculus} SCOP: b.55.1.2 PDB: 1nu2_A* 1oqn_A*
Length = 152
Score = 98.8 bits (246), Expect = 2e-25
Identities = 19/134 (14%), Positives = 46/134 (34%), Gaps = 16/134 (11%)
Query: 178 RFLLGYLGSVETSAHKGNAVICQAVHKIRQTQH-------RPHSCILEVSDEGLRMVEKS 230
R+ +G E SA +G+ + ++ K++ L +S G+++ +
Sbjct: 19 RYKAKLIGIDEVSAARGDKLCQDSMMKLKGVVAGARSKGEHKQKIFLTISFGGIKIFD-- 76
Query: 231 RPGQHRKVRGLDYFYSLKNVMFCGFHPREPCYLGFISKHPNMQRFACHVFLASESTRPVA 290
K L + +++ + + + G++ +++ PV
Sbjct: 77 -----EKTGALQHHHAVHEISYIAKDITDHRAFGYVCGKEG--NHRFVAIKTAQAAEPVI 129
Query: 291 EAVGRAFQRFYEKF 304
+ FQ YE
Sbjct: 130 LDLRDLFQLIYELK 143
>1wgu_A APBB2, amyloid beta (A4) precursor protein-bindin, family B, member
2; phosphotyrosine-interaction domain, amyloid disease,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.2
PDB: 2roz_B
Length = 136
Score = 93.8 bits (233), Expect = 7e-24
Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 13/135 (9%)
Query: 169 TTTPKPKRE---RFLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPHSC--ILEVSDEG 223
++ P PK E +F + YLG + G + A+ + + + + V+D
Sbjct: 5 SSGPTPKTELVQKFRVQYLGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADAT 64
Query: 224 LRMVEKSRPGQHRKVRGLDYFYSLKNVMFCGFHPREPCYLGFISKHPNMQRFACHVFLAS 283
+ ++ + + + ++ + F G ++ FI QRF CHVF
Sbjct: 65 VTVISEKNEEE------VLVECRVRFLSFMGVG-KDVHTFAFIM-DTGNQRFECHVFWCE 116
Query: 284 ESTRPVAEAVGRAFQ 298
+ V+EAV A
Sbjct: 117 PNAANVSEAVQAACS 131
>2yt0_A Amyloid beta A4 protein and amyloid beta A4 precursor
protein-binding family B member...; chimera, Fe65L, PID
domain, amyloid precursor protein; NMR {Mus musculus}
PDB: 2yt1_A
Length = 176
Score = 93.2 bits (231), Expect = 3e-23
Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 10/129 (7%)
Query: 170 TTPKPKRERFLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPHS--CILEVSDEGLRMV 227
T ++F + YLG + G + A+ + + + + V+D + ++
Sbjct: 55 TPKTELVQKFRVQYLGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADATVTVI 114
Query: 228 EKSRPGQHRKVRGLDYFYSLKNVMFCGFHPREPCYLGFISKHPNMQRFACHVFLASESTR 287
+ + + ++ + F G ++ FI QRF CHVF +
Sbjct: 115 SEKNEEE------VLVECRVRFLSFMGVG-KDVHTFAFIM-DTGNQRFECHVFWCEPNAA 166
Query: 288 PVAEAVGRA 296
V+EAV A
Sbjct: 167 NVSEAVQAA 175
>2ysz_A Amyloid beta A4 precursor protein-binding family B member 2 and
amyloid beta A4 protein...; chimera, Fe65L, PID domain,
amyloid precursor protein; NMR {Mus musculus}
Length = 185
Score = 90.3 bits (223), Expect = 5e-22
Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 13/141 (9%)
Query: 169 TTTPKPKRE---RFLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPHS--CILEVSDEG 223
++ P PK E +F + YLG + G + A+ + + + + V+D
Sbjct: 5 SSGPTPKTELVQKFRVQYLGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADAT 64
Query: 224 LRMVEKSRPGQHRKVRGLDYFYSLKNVMFCGFHPREPCYLGFISKHPNMQRFACHVFLAS 283
+ ++ + + + ++ + F G ++ FI QRF CHVF
Sbjct: 65 VTVISEKNEEE------VLVECRVRFLSFMGVG-KDVHTFAFIM-DTGNQRFECHVFWCE 116
Query: 284 ESTRPVAEAVGRAFQRFYEKF 304
+ V+EAV A
Sbjct: 117 PNAANVSEAVQAACSGPSSGI 137
>4dbb_A Amyloid beta A4 precursor protein-binding family 1; X11S/mints, PTB
domain, chimera protein, protein transport; HET: IPA
GOL; 1.90A {Rattus norvegicus}
Length = 162
Score = 85.2 bits (210), Expect = 3e-20
Identities = 21/137 (15%), Positives = 49/137 (35%), Gaps = 16/137 (11%)
Query: 178 RFLLGYLGSVETSAHKGNAVICQAVHKIRQ--------TQHRPHSCILEVSDEGLRMVEK 229
F YLGS + + K + + + L +S + ++++
Sbjct: 10 IFAANYLGSTQLLSDKTPSKNVRMMQAQEAVSRIKPEGESQPMTEVDLFISTQRIKVLN- 68
Query: 230 SRPGQHRKVRGLDYFYSLKNVMFCGFHPREPCYLGFISKHPNMQRFACHVFLASESTRPV 289
+ + L+ + + + + + CHVF SE + +
Sbjct: 69 ------ADTQEPMMDHPLRTISYIADIGNIVVLMARRRMPRSQYKMICHVF-ESEDAQLI 121
Query: 290 AEAVGRAFQRFYEKFIE 306
A+++G+AF Y++F+
Sbjct: 122 AQSIGQAFSVAYQEFLR 138
>1wvh_A Tensin, tensin1; beta sandwich, cell adhesion; 1.50A {Gallus
gallus} SCOP: b.55.1.2 PDB: 2gjy_A
Length = 134
Score = 83.9 bits (207), Expect = 4e-20
Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 20/125 (16%)
Query: 183 YLGSVETSAHKGNAVICQAVHKI--RQTQHRPHSCILEVSDEGLRMVEKSRPGQHRKVRG 240
++ SVE + G I +AV + +VS +G+ + + R R+
Sbjct: 8 FINSVEMESLTGPQAISKAVAETLVADPTPTATIVHFKVSAQGITLTDNQRKLFFRR--- 64
Query: 241 LDYFYSLKNVMFCGFHPREPCY-----------LGFISKHPN-MQRFACHVFLASESTRP 288
Y L V FC P+E + GF+++ CH+F + +P
Sbjct: 65 ---HYPLNTVTFCDLDPQERKWTKTDGSGPAKLFGFVARKQGSTTDNVCHLFAELDPDQP 121
Query: 289 VAEAV 293
A V
Sbjct: 122 AAAIV 126
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 77.6 bits (192), Expect = 9e-19
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 24/82 (29%)
Query: 81 EATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPW 140
E THR++ +F+PRH DE+ELE+ DP+ V +AED W E
Sbjct: 3 EQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEA--------------------- 41
Query: 141 MLRVNLRTGRQGIFPSAYAVDV 162
N+RTG +G+FP+ YA++V
Sbjct: 42 ---YNMRTGARGVFPAYYAIEV 60
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 76.6 bits (189), Expect = 3e-18
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 24/88 (27%)
Query: 78 ELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLP 137
E E THR++ +F+PRH DE+ELE+ DP+ V +AED W E
Sbjct: 3 EEHEQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEA------------------ 44
Query: 138 TPWMLRVNLRTGRQGIFPSAYAVDVEYE 165
N+RTG +G+FP+ YA++V E
Sbjct: 45 ------YNMRTGARGVFPAYYAIEVTKE 66
>3hqc_A Tensin-like C1 domain-containing phosphatase; TENC1,
phosphotyrosine binding domain, PTB, TNS2, KIAA1075,
struct genomics, PSI-2; 1.80A {Homo sapiens} PDB: 2dkq_A
Length = 157
Score = 73.9 bits (181), Expect = 3e-16
Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 19/124 (15%)
Query: 183 YLGSVETSAHKGNAVICQAVHKIRQTQHRPHSCI--LEVSDEGLRMVEKSRPGQHRKVRG 240
YL SVET + G + +A RP + +VS +G+ + + R R+
Sbjct: 20 YLTSVETESLTGPQAVARASSAALSCSPRPTPAVVHFKVSAQGITLTDNQRKLFFRR--- 76
Query: 241 LDYFYSLKNVMFCGFHPREPCY----------LGFISKHPN-MQRFACHVFLASESTRPV 289
Y + ++ F P++ + GF++K P CH+F + +P
Sbjct: 77 ---HYPVNSITFSSTDPQDRRWTNPDGTTSKIFGFVAKKPGSPWENVCHLFAELDPDQPA 133
Query: 290 AEAV 293
V
Sbjct: 134 GAIV 137
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 58.7 bits (142), Expect = 2e-11
Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 24/108 (22%)
Query: 63 SSRSASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAK 122
SS S+ + + E T + ++ + P++ DE+EL GD I++S + EG
Sbjct: 2 SSGSSGSRDIRFANHE----TLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEG--- 54
Query: 123 ESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAYAVDVEYEDLQTT 170
W+ +L TG G+ P Y +
Sbjct: 55 -----------------WIYGTSLTTGCSGLLPENYITKADECSTWIF 85
>1n3h_A SHC transforming protein; free protein, beta sandwich, signaling
protein; NMR {Homo sapiens} SCOP: b.55.1.2 PDB: 1oy2_A
2l1c_A* 1shc_A*
Length = 207
Score = 60.6 bits (146), Expect = 3e-11
Identities = 22/163 (13%), Positives = 54/163 (33%), Gaps = 42/163 (25%)
Query: 179 FLLGYLGSVE-------TSAHKGNAVICQAVHKIRQT----------------------- 208
+L+ Y+G VE + V +A+ + +
Sbjct: 52 YLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGATRRRKPCSRPLSSILG 111
Query: 209 ----QHRPHSCILEVSDEGLRMVEKSRPGQHRKVRGLDYFYSLKNVMFCGFH-PREPCYL 263
+ L VS L ++ + + + ++++ F P Y+
Sbjct: 112 RSNLKFAGMPITLTVSTSSLNLMA-------ADCKQIIANHHMQSISFASGGDPDTAEYV 164
Query: 264 GFISKHPNMQRFACHVFLASESTRPVAEAVGRAFQRFYEKFIE 306
+++K P QR + + V +G+AF+ +++++
Sbjct: 165 AYVAKDPVNQRACHILECPEGLAQDVISTIGQAFELRFKQYLR 207
>1aqc_A X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1.2 PDB: 1x11_A*
Length = 172
Score = 57.2 bits (137), Expect = 3e-10
Identities = 25/166 (15%), Positives = 52/166 (31%), Gaps = 45/166 (27%)
Query: 178 RFLLGYLGSVETSAHKGN------AVICQAVHKIRQTQHRPHS--------------CIL 217
F YLGS + + K +AV +I+ Q S L
Sbjct: 9 IFAANYLGSTQLLSDKTPSKNVRMMQAQEAVSRIKMAQKLAKSRKKAPEGESQPMTEVDL 68
Query: 218 EVSDEGLRMVEKSRPGQHRKVRGLDYFYSLKNVMFCGFHPREPCYLGFI----------- 266
+ + ++++ + + L+ + + +
Sbjct: 69 FILTQRIKVLN-------ADTQETMMDHPLRTISYIADIGNIVVLMARRRIPRSNSQENV 121
Query: 267 ------SKHPNMQRFACHVFLASESTRPVAEAVGRAFQRFYEKFIE 306
+ CHVF SE + +A+++G+AF Y++F+
Sbjct: 122 EASHPSQDGKRQYKMICHVFE-SEDAQLIAQSIGQAFSVAYQEFLR 166
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 51.1 bits (123), Expect = 5e-09
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 24/76 (31%)
Query: 83 THRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWML 142
+R+++++ P++ DE+EL GD + V + +D W G
Sbjct: 9 PYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVG----------------------- 45
Query: 143 RVNLRTGRQGIFPSAY 158
V+ RT + G FP Y
Sbjct: 46 -VSRRTQKFGTFPGNY 60
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 47.2 bits (113), Expect = 1e-07
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 24/74 (32%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+LH + +E++L+ G+ I V + +D W +G +
Sbjct: 11 VALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKG------------------------L 46
Query: 145 NLRTGRQGIFPSAY 158
+L TGR GIFPS Y
Sbjct: 47 SLLTGRTGIFPSDY 60
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 47.7 bits (113), Expect = 2e-07
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 12/80 (15%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
R+L+ F +++EL GD + VS A + E WM +
Sbjct: 15 RALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGER---------CPQSVGWMPGL 65
Query: 145 NLRTGRQGIFPSAYAVDVEY 164
N RT ++G FP Y VE+
Sbjct: 66 NERTRQRGDFPGTY---VEF 82
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 51.4 bits (122), Expect = 2e-07
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 24/79 (30%)
Query: 84 HRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLR 143
+++ PR DE+ +E GD I V+ D + +G
Sbjct: 445 QIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGV----------------------- 481
Query: 144 VNLRTGRQGIFPSAYAVDV 162
N + GR G++PS +
Sbjct: 482 -NRKLGRTGLYPSYKVREK 499
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain,
peptide complex, alternative splicing, disease mutation,
HOST-virus interaction, phosphoprotein, polymorphism;
1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A
1pks_A 1pkt_A
Length = 83
Score = 46.6 bits (110), Expect = 3e-07
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 12/80 (15%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
R+L+ + ++++L +GD + V+ + +E+ W+
Sbjct: 9 RALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEA---------RPEEIGWLNGY 59
Query: 145 NLRTGRQGIFPSAYAVDVEY 164
N TG +G FP Y VEY
Sbjct: 60 NETTGERGDFPGTY---VEY 76
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 44.3 bits (105), Expect = 2e-06
Identities = 17/74 (22%), Positives = 22/74 (29%), Gaps = 25/74 (33%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
F + DEV L+ D + V + ED W G
Sbjct: 21 EITKAFFAKQADEVTLQQADVVLVL-QQEDGWLYG------------------------E 55
Query: 145 NLRTGRQGIFPSAY 158
LR G G FP +
Sbjct: 56 RLRDGETGWFPEDF 69
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 43.1 bits (102), Expect = 4e-06
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 28/100 (28%)
Query: 64 SRSASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKE 123
S + + T + + L A L+ + D++ G+ + N +E W E +
Sbjct: 2 SMTGTLRTRGGTGVTLFVA----LYDYEAITEDDLSFHKGEKFQILNSSEGDWWEAR--- 54
Query: 124 STYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAYAVDVE 163
+L TG G PS Y V+
Sbjct: 55 ---------------------SLTTGETGYIPSNYVAPVD 73
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 43.6 bits (103), Expect = 6e-06
Identities = 14/90 (15%), Positives = 24/90 (26%), Gaps = 26/90 (28%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
L+ F DE+ +G+ +++ W K
Sbjct: 9 IVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAK-----------------------P 45
Query: 145 NLRTGRQGIFPSAYAVDVEYEDLQTTTPKP 174
R G G+ P + V D+ T
Sbjct: 46 IGRLGGPGLVPVGF---VSIIDIATGYATG 72
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 43.5 bits (102), Expect = 6e-06
Identities = 23/127 (18%), Positives = 42/127 (33%), Gaps = 41/127 (32%)
Query: 53 SHHNLHDSTI----------------SSRSASPVTLPPSKLELLEATHRSLHKFIPRHFD 96
SHH+ H S+ S + + LPP + ++A H + D
Sbjct: 4 SHHHHHHSSGLVPRGSHMATVNGAVEGSTTTGRLDLPPGFMFKVQA----QHDYTATDTD 59
Query: 97 EVELEIGDPIYV-----SNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRVNLRTGRQ 151
E++L+ GD + V E ++ W G + + +
Sbjct: 60 ELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDW----------------NQHKELEKCR 103
Query: 152 GIFPSAY 158
G+FP +
Sbjct: 104 GVFPENF 110
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 42.3 bits (100), Expect = 7e-06
Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 30/96 (31%)
Query: 63 SSRSASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAK 122
S S P P S LE + A ++ + DE+ + G IYV + +D W EG
Sbjct: 3 SGSSGDPPWAPRSYLEKVVA----IYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMN 58
Query: 123 ESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAY 158
G G+FP Y
Sbjct: 59 --------------------------GVTGLFPGNY 68
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 42.3 bits (100), Expect = 9e-06
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 27/85 (31%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+L+ + R D++ G+ + N +E W E +
Sbjct: 9 EALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEAR------------------------ 44
Query: 145 NLRTGRQGIFPSAY---AVDVEYED 166
+L TG G PS Y ++Y+D
Sbjct: 45 SLTTGETGYIPSIYLAPVDRLDYKD 69
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 41.4 bits (98), Expect = 1e-05
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 26/86 (30%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+ L ++IP++ DE+EL++GD I ++ E E+ W G
Sbjct: 5 KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLN---------------------- 42
Query: 145 NLRTGRQGIFPSAYAVDVEYEDLQTT 170
+ G+FPS + ++E E
Sbjct: 43 ----NKLGLFPSNFVKELELEHHHHH 64
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 41.0 bits (97), Expect = 2e-05
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 26/76 (34%)
Query: 83 THRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWML 142
HR L F+P +E+++ G+ ++V + D W
Sbjct: 9 AHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVM---------------------- 46
Query: 143 RVNLRTGRQGIFPSAY 158
G++G+ P Y
Sbjct: 47 ----FNGQKGLVPCNY 58
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 41.3 bits (97), Expect = 2e-05
Identities = 10/89 (11%), Positives = 30/89 (33%), Gaps = 21/89 (23%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+ ++ +++ L G I + + W +G+ L+
Sbjct: 11 QVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGE---------------------LQA 49
Query: 145 NLRTGRQGIFPSAYAVDVEYEDLQTTTPK 173
+ ++G FP+++ + + + P
Sbjct: 50 RGKKRQKGWFPASHVKLLGPSSERASGPS 78
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 41.3 bits (97), Expect = 2e-05
Identities = 12/93 (12%), Positives = 22/93 (23%), Gaps = 25/93 (26%)
Query: 66 SASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKEST 125
S+ P+ L L + G+ + V ++
Sbjct: 2 SSGSSGPLPNPEGLDSDFLAVLSDYPSPDISPPIFRRGEKLRVISDEGG----------- 50
Query: 126 YVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAY 158
W ++L TGR+ P
Sbjct: 51 --------------WWKAISLSTGRESYIPGIC 69
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 41.3 bits (97), Expect = 2e-05
Identities = 19/109 (17%), Positives = 28/109 (25%), Gaps = 26/109 (23%)
Query: 66 SASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKEST 125
S+ P +L L ++ DE+ L G + V + D W G
Sbjct: 2 SSGSSGDPGERLYDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGS----- 56
Query: 126 YVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAYAVDVEYEDLQTTTPKP 174
G+ G FPS Y + L
Sbjct: 57 ---------------------YNGQVGWFPSNYVTEEGDSPLGDHVGSG 84
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 40.8 bits (96), Expect = 3e-05
Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 35/116 (30%)
Query: 63 SSRSASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAK 122
S + EL+ A L+ + + EV ++ GD + + N W + +
Sbjct: 3 GSHHHHHHGSDETGKELVLA----LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV- 57
Query: 123 ESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAYAVDVEYEDLQTTTPKPKRER 178
RQG P+AY + L P+ E+
Sbjct: 58 -------------------------NDRQGFVPAAYV-----KKLAAAWSHPQFEK 83
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 40.3 bits (95), Expect = 3e-05
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+ L ++IP++ DE+EL++GD I ++ E E+ W G
Sbjct: 11 KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLN---------------------- 48
Query: 145 NLRTGRQGIFPSAY 158
+ G+FPS +
Sbjct: 49 ----NKLGLFPSNF 58
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide
COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Length = 64
Score = 39.9 bits (94), Expect = 4e-05
Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 24/74 (32%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
R+++ + + DEV GD I +D W G
Sbjct: 10 RAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYG------------------------T 45
Query: 145 NLRTGRQGIFPSAY 158
RTGR G+ P+ Y
Sbjct: 46 VQRTGRTGMLPANY 59
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 40.4 bits (95), Expect = 4e-05
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 24/74 (32%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+L+ + + ++ G+ + W E +
Sbjct: 10 VALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEAR------------------------ 45
Query: 145 NLRTGRQGIFPSAY 158
+L TG G PS Y
Sbjct: 46 SLTTGETGYIPSNY 59
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 39.4 bits (93), Expect = 5e-05
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
R+L+ F PR DE+ E GD IY+++ ++ W +G +K
Sbjct: 7 RALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK---------------------- 44
Query: 145 NLRTGRQGIFPSAY 158
GR G+ PS Y
Sbjct: 45 ----GRTGLIPSNY 54
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 40.9 bits (96), Expect = 5e-05
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 24/99 (24%)
Query: 60 STISSRSASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEG 119
S SS + + P+ L +L+ + R +++ + G+ + N E
Sbjct: 6 SGASSSFSVVSSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEG----- 60
Query: 120 KAKESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAY 158
W ++ TG+ G PS Y
Sbjct: 61 -------------------DWWEARSIATGKSGYIPSNY 80
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 39.3 bits (92), Expect = 8e-05
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 26/76 (34%)
Query: 85 RSLHKFIP-RHFDEVELEIGDPIYV-SNEAEDLWCEGKAKESTYVPVVKASSRLPTPWML 142
+++ + + GD + + E +D W G+
Sbjct: 11 KTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGE---------------------- 48
Query: 143 RVNLRTGRQGIFPSAY 158
+ T +G FPS+Y
Sbjct: 49 --HDTTKARGWFPSSY 62
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 89
Score = 39.8 bits (93), Expect = 8e-05
Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 30/110 (27%)
Query: 54 HHNLHDSTISSRSASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYV----- 108
HH+ H S+ + ++ + +E+ L GD + V
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMGTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDC 61
Query: 109 SNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAY 158
+ ++ W G+ L +GR G+FPS Y
Sbjct: 62 AVSGDEGWWTGQ-------------------------LPSGRVGVFPSNY 86
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 68
Score = 39.1 bits (92), Expect = 8e-05
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+ ++P++ DE+EL++GD I V E E+ W EG
Sbjct: 11 QVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLN---------------------- 48
Query: 145 NLRTGRQGIFPSAY 158
G+ G+FPS +
Sbjct: 49 ----GKTGMFPSNF 58
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 39.1 bits (92), Expect = 8e-05
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 24/74 (32%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+L+ F P + +E+ L GD +++S + W +
Sbjct: 5 VALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAE------------------------ 40
Query: 145 NLRTGRQGIFPSAY 158
N + G+ P +
Sbjct: 41 NESGSKTGLVPEEF 54
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 38.9 bits (91), Expect = 9e-05
Identities = 18/67 (26%), Positives = 21/67 (31%), Gaps = 24/67 (35%)
Query: 96 DEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFP 155
DE+ GD V NE ED WM NLRT QG+
Sbjct: 21 DEISFLKGDMFIVHNELED------------------------GWMWVTNLRTDEQGLIV 56
Query: 156 SAYAVDV 162
+V
Sbjct: 57 EDLVEEV 63
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 38.7 bits (91), Expect = 1e-04
Identities = 10/75 (13%), Positives = 27/75 (36%), Gaps = 25/75 (33%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDL-WCEGKAKESTYVPVVKASSRLPTPWMLR 143
+ F+ DE+ ++ GD +Y+ ++ + W +
Sbjct: 6 IVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQ----------------------- 42
Query: 144 VNLRTGRQGIFPSAY 158
+ +G+ G+ P+ +
Sbjct: 43 -LVDSGKSGLVPAQF 56
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 39.4 bits (92), Expect = 1e-04
Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 26/93 (27%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+ ++P++ DE+EL++GD I V E E+ W EG
Sbjct: 22 QVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLN---------------------- 59
Query: 145 NLRTGRQGIFPSAYAVDVEYEDLQTTTPKPKRE 177
G+ G+FPS + ++ E + + +
Sbjct: 60 ----GKTGMFPSNFIKELSGESDELGISQDEHH 88
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 39.5 bits (92), Expect = 2e-04
Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 26/90 (28%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+L++F DE+++ G+ + + + W ++ +
Sbjct: 7 VTLYEFKAERDDELDVSPGENLSICAHYDYEW-----------------------FIAKP 43
Query: 145 NLRTGRQGIFPSAYAVDVEYEDLQTTTPKP 174
R G G+ P +Y V DL
Sbjct: 44 INRLGGPGLVPVSY---VRIIDLMDPAKYA 70
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 39.7 bits (92), Expect = 2e-04
Identities = 17/109 (15%), Positives = 30/109 (27%), Gaps = 25/109 (22%)
Query: 50 SLVSHHNLHDSTISSRSASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVS 109
S S+ S + E +++ F ++ L+IGD + +
Sbjct: 29 SNYDFSGPSSGIEGRGSSGSSGSSGSSGDK-ERHGVAIYNFQGSGAPQLSLQIGDVVRIQ 87
Query: 110 NEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAY 158
E W G + QGIFP ++
Sbjct: 88 -ETCGDWYRGYLIK-----------------------HKMLQGIFPKSF 112
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 88
Score = 39.0 bits (91), Expect = 2e-04
Identities = 18/112 (16%), Positives = 35/112 (31%), Gaps = 28/112 (25%)
Query: 63 SSRSASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAK 122
SS S+ P+ + +A + + LE+GD + V+ + EG+
Sbjct: 2 SSGSSGPLPSTQNGPVFAKAIQK--RVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVN 59
Query: 123 ESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAYAVDVEYEDLQTTTPKP 174
GR+G+FP + + ++ P
Sbjct: 60 --------------------------GRKGLFPFTHVKIFDPQNPDENESGP 85
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 38.5 bits (90), Expect = 2e-04
Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 29/107 (27%)
Query: 63 SSRSASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAK 122
SS + L + ++ A L+ + E+ L + + + +E W +
Sbjct: 5 SSGEDNRRPLWEPEETVVIA----LYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQ-- 58
Query: 123 ESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAYAVDVEYEDLQT 169
R G +G PS+Y V+ +L+T
Sbjct: 59 -----------------------DRNGHEGYVPSSYLVEKSPNNLET 82
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 38.6 bits (90), Expect = 2e-04
Identities = 15/96 (15%), Positives = 37/96 (38%), Gaps = 27/96 (28%)
Query: 63 SSRSASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAK 122
+S +++ + + E + +L+ + H +++ + GD + V E+ + W + +
Sbjct: 9 NSHNSNTPGIREAGSE--DIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKAR-- 63
Query: 123 ESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAY 158
+L T ++G PS Y
Sbjct: 64 ----------------------SLATRKEGYIPSNY 77
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling
protein; NMR {Homo sapiens}
Length = 67
Score = 38.1 bits (89), Expect = 2e-04
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 28/76 (36%)
Query: 85 RSLHKFIPRHFDEVELEI--GDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWML 142
R + K +P +D+ L + G+ + V+ EG+
Sbjct: 10 RVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECN-------------------- 49
Query: 143 RVNLRTGRQGIFPSAY 158
G++G FP +
Sbjct: 50 ------GKRGHFPFTH 59
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 38.0 bits (89), Expect = 2e-04
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 26/76 (34%)
Query: 83 THRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWML 142
+R+L+ + ++ DE++L GD + V E ED W +
Sbjct: 10 EYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVE---------------------- 47
Query: 143 RVNLRTGRQGIFPSAY 158
R G++G P +Y
Sbjct: 48 ----RNGQRGFVPGSY 59
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 38.0 bits (89), Expect = 2e-04
Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 25/74 (33%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+L+ ++P + ++++L GD ++ E+ W +
Sbjct: 12 VALYDYMPMNANDLQLRKGDEYFILEESNLPWWRAR------------------------ 47
Query: 145 NLRTGRQGIFPSAY 158
+ G++G PS Y
Sbjct: 48 -DKNGQEGYIPSNY 60
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton, phosphorylation,
SH3 domain, DNA damage, DNA repair, nucleus; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 38.0 bits (89), Expect = 3e-04
Identities = 10/75 (13%), Positives = 27/75 (36%), Gaps = 25/75 (33%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDL-WCEGKAKESTYVPVVKASSRLPTPWMLR 143
+ F+ DE+ ++ GD +Y+ ++ + W +
Sbjct: 10 IVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQ----------------------- 46
Query: 144 VNLRTGRQGIFPSAY 158
+ +G+ G+ P+ +
Sbjct: 47 -LVDSGKSGLVPAQF 60
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 38.6 bits (90), Expect = 3e-04
Identities = 25/112 (22%), Positives = 37/112 (33%), Gaps = 28/112 (25%)
Query: 63 SSRSASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAK 122
SS S+ PP+ L + + F E+ G+ I + + + W EG+
Sbjct: 2 SSGSSGK---PPTYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGR-- 56
Query: 123 ESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAYAVDVEYEDLQTTTPKP 174
TGRQGIFP++Y V V E
Sbjct: 57 ----------------------ITGTGRQGIFPASY-VQVSREPRLRLCDDS 85
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 37.3 bits (87), Expect = 3e-04
Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 25/74 (33%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+LH + P H ++ E G+ + + ++ + W + +
Sbjct: 10 IALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQ------------------------ 44
Query: 145 NLRTGRQGIFPSAY 158
+L TG++G P +
Sbjct: 45 SLTTGQEGFIPFNF 58
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 37.2 bits (87), Expect = 3e-04
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
++L+ + + DE+ D I + E W G R+
Sbjct: 9 KALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTG-----------------------RL 45
Query: 145 NLRTGRQGIFPSAY 158
G+QG+FP+ Y
Sbjct: 46 R---GKQGLFPNNY 56
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 37.7 bits (88), Expect = 3e-04
Identities = 19/72 (26%), Positives = 22/72 (30%), Gaps = 24/72 (33%)
Query: 92 PRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRVNLRTGRQ 151
DE+ GD V NE ED G WM NLRT Q
Sbjct: 19 VPDTDEISFLKGDMFIVHNELED----G--------------------WMWVTNLRTDEQ 54
Query: 152 GIFPSAYAVDVE 163
G+ +V
Sbjct: 55 GLIVEDLVEEVS 66
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 37.2 bits (87), Expect = 4e-04
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 29/86 (33%)
Query: 73 PPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKA 132
P + +++ A L+ + H D++ + G+ + V E + W + K
Sbjct: 3 PEEQGDIVVA----LYPYDGIHPDDLSFKKGEKMKVLEEHGE-WWKAK------------ 45
Query: 133 SSRLPTPWMLRVNLRTGRQGIFPSAY 158
+L T ++G PS Y
Sbjct: 46 ------------SLLTKKEGFIPSNY 59
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 4e-04
Identities = 38/239 (15%), Positives = 73/239 (30%), Gaps = 73/239 (30%)
Query: 3 LPAFTQPPHSVPSLADELGDLSPWSQETDSTIDSDTERY-------YPSIDSGLSLVSH- 54
L + + + ++ W + +T D D Y P I G+ ++H
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD---YLLSIPISCPLI--GVIQLAHY 249
Query: 55 ---------------HNLHDSTISSR---SASPVTLPPSKLELLEATHRSL--------- 87
L +T S+ +A + S + +++
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR 309
Query: 88 -HKFIPRHF-------DEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTP 139
++ P D +E G P + L +E V K +S LP
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVPSPM------LSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 140 WMLRVNLRTGRQ-----GIFPSA-YAVDVEYEDL-------QTTTPKPKRE-----RFL 180
+ ++L G + G P + Y +++ Q+ P +R+ RFL
Sbjct: 364 KQVEISLVNGAKNLVVSG-PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
Score = 33.1 bits (75), Expect = 0.16
Identities = 37/203 (18%), Positives = 62/203 (30%), Gaps = 73/203 (35%)
Query: 2 ALPAFTQPPHSVP-SLADELGDLSP------WSQET-DSTIDSDTERYYPSIDSGLSLVS 53
A P + PP + SL + G SP +QE ++ T + P+ + +S
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN-KTNSHLPA-GKQVE-IS 369
Query: 54 HHNLHDSTISSRSASPVTLPPSKLELLEATHRSL---------------------HKF-- 90
N + + V+ PP L L T R ++F
Sbjct: 370 LVNGAKNLV-------VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP 422
Query: 91 --IPRH---------------------FDEVELEIGDPIYVSNEAEDLWCEGKAKESTYV 127
P H F+ +++I P+Y + + DL S +
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI--PVYDTFDGSDL-----RVLSGSI 475
Query: 128 P--VVKASSRLPTPWMLRVNLRT 148
+V RLP W +
Sbjct: 476 SERIVDCIIRLPVKWETTTQFKA 498
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 36.8 bits (86), Expect = 5e-04
Identities = 19/74 (25%), Positives = 24/74 (32%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
R+ F + DE+ GD I+V+ E W EG
Sbjct: 8 RAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHN---------------------- 45
Query: 145 NLRTGRQGIFPSAY 158
GR G FPS Y
Sbjct: 46 ----GRTGWFPSNY 55
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 36.9 bits (86), Expect = 5e-04
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 24/74 (32%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+L+ F P + +E+ L GD +++S + W +
Sbjct: 9 VALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAE------------------------ 44
Query: 145 NLRTGRQGIFPSAY 158
N + G+ P +
Sbjct: 45 NESGSKTGLVPEEF 58
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 36.4 bits (85), Expect = 6e-04
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+L++F P+ ++ L+ GD + + + W +G
Sbjct: 6 EALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKG-----------------------SC 42
Query: 145 NLRTGRQGIFPSAY 158
N GR GIFP+ Y
Sbjct: 43 N---GRTGIFPANY 53
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 36.9 bits (86), Expect = 6e-04
Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 26/76 (34%)
Query: 83 THRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWML 142
+ ++ + + DE+ E G + V + + W W +
Sbjct: 10 KYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGW-----------------------WYI 46
Query: 143 RVNLRTGRQGIFPSAY 158
R G++G P++Y
Sbjct: 47 RYL---GKEGWAPASY 59
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 36.9 bits (86), Expect = 6e-04
Identities = 19/74 (25%), Positives = 25/74 (33%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
++ F + DE+ + GD IYV+ E W EG
Sbjct: 14 KARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLN---------------------- 51
Query: 145 NLRTGRQGIFPSAY 158
GR G FPS Y
Sbjct: 52 ----GRTGWFPSNY 61
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85,
PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 36.4 bits (85), Expect = 7e-04
Identities = 19/74 (25%), Positives = 24/74 (32%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
R+ F + DE+ GD I+V+ E W EG
Sbjct: 10 RAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHN---------------------- 47
Query: 145 NLRTGRQGIFPSAY 158
GR G FPS Y
Sbjct: 48 ----GRTGWFPSNY 57
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 36.4 bits (85), Expect = 7e-04
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
++L+ + + DE+ + GD I V + W EG +
Sbjct: 7 KALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEG-----------------------EL 43
Query: 145 NLRTGRQGIFPSAY 158
N G++G P+ Y
Sbjct: 44 N---GKRGWVPANY 54
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 36.5 bits (85), Expect = 8e-04
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 30/93 (32%)
Query: 66 SASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKEST 125
+ P +PP +A L+ F P + E+ GD I ++N+ ++ W EG
Sbjct: 2 AMDPEFMPPLDQPSCKA----LYDFEPENDGELGFREGDLITLTNQIDENWYEG------ 51
Query: 126 YVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAY 158
++ G+ G FP +Y
Sbjct: 52 -----------------MLH---GQSGFFPLSY 64
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 36.5 bits (85), Expect = 8e-04
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 28/76 (36%)
Query: 85 RSLHKFIPRHFDEVEL--EIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWML 142
+++ K +P +D+ L E+GD + V+ + EG+
Sbjct: 5 KAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVN-------------------- 44
Query: 143 RVNLRTGRQGIFPSAY 158
GR+G+FP +
Sbjct: 45 ------GRKGLFPFTH 54
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 36.1 bits (84), Expect = 0.001
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
R+ F + E+ L+ GD +Y+ + + W EG
Sbjct: 11 RAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEG-----------------------EH 47
Query: 145 NLRTGRQGIFPSAY 158
+ GR GIFP Y
Sbjct: 48 H---GRVGIFPRTY 58
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 36.1 bits (84), Expect = 0.001
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 26/76 (34%)
Query: 85 RSLHKFIP-RHFDEVELEIGDPIYV-SNEAEDLWCEGKAKESTYVPVVKASSRLPTPWML 142
+++ + + + GD I + EA D W G+
Sbjct: 11 KAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGE---------------------- 48
Query: 143 RVNLRTGRQGIFPSAY 158
+ +T +G FP +Y
Sbjct: 49 --SEKTKMRGWFPFSY 62
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 36.1 bits (84), Expect = 0.001
Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+L+KF+P+ +++E+ GD I + ++ + W +GK +
Sbjct: 11 VALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQ---------------------- 48
Query: 145 NLRTGRQGIFPSAY 158
R G FP+ +
Sbjct: 49 ----DRIGFFPANF 58
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 35.7 bits (83), Expect = 0.001
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 25/75 (33%)
Query: 85 RSLHKFIPR-HFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLR 143
+ + F E+ L+ GD IY++ E W GK
Sbjct: 4 EAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGK----------------------- 40
Query: 144 VNLRTGRQGIFPSAY 158
L ++G P+AY
Sbjct: 41 -LLDGSKEGWVPTAY 54
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1;
IRTKS-SH3, espfu, complex structure, protein binding;
NMR {Homo sapiens}
Length = 67
Score = 36.1 bits (84), Expect = 0.001
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 26/76 (34%)
Query: 85 RSLHKFIP-RHFDEVELEIGDPIYV-SNEAEDLWCEGKAKESTYVPVVKASSRLPTPWML 142
+++ + + GD I + E +D W G+
Sbjct: 10 KTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGE---------------------- 47
Query: 143 RVNLRTGRQGIFPSAY 158
+ + +G FPS+Y
Sbjct: 48 --HDVSKARGWFPSSY 61
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 36.2 bits (84), Expect = 0.001
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 17/74 (22%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+L + R +++ GD + V + + + W + E + +
Sbjct: 11 VALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQ------------- 57
Query: 145 NLRTGRQGIFPSAY 158
QG PS Y
Sbjct: 58 ----QLQGYIPSNY 67
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A
{Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A
2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A
2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Length = 62
Score = 35.7 bits (83), Expect = 0.001
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
L+ + + E+ ++ GD + + N W + +
Sbjct: 10 LVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVN---------------------- 47
Query: 145 NLRTGRQGIFPSAY 158
GRQG P+AY
Sbjct: 48 ----GRQGFVPAAY 57
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 36.2 bits (84), Expect = 0.001
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 26/90 (28%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
++L+ F R DE+ LE GD + + + E+ W G
Sbjct: 11 KALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLN---------------------- 48
Query: 145 NLRTGRQGIFPSAYAVDVEYEDLQTTTPKP 174
G++G FP+AY ++ T T
Sbjct: 49 ----GKKGHFPAAYVEELPSNAGNTATKAS 74
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 36.1 bits (84), Expect = 0.001
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 30/85 (35%)
Query: 74 PSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKAS 133
S LE + + + + E+ L+ G+ + V + E W
Sbjct: 5 SSGLE----QYVVVSNYKKQENSELSLQAGEVVDVIEKNESGW----------------- 43
Query: 134 SRLPTPWMLRVNLRTGRQGIFPSAY 158
W + + QG P+ Y
Sbjct: 44 ------WFVSTS---EEQGWVPATY 59
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 35.7 bits (83), Expect = 0.001
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
R+L+ F PR DE+ E GD IY+++ ++ W +G
Sbjct: 11 RALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKG-----------------------TS 47
Query: 145 NLRTGRQGIFPSAY 158
GR G+ PS Y
Sbjct: 48 K---GRTGLIPSNY 58
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 38.1 bits (88), Expect = 0.001
Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 24/109 (22%)
Query: 66 SASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKEST 125
S+ + P + E +++ F ++ L+IGD + + E W G
Sbjct: 2 SSGSSGMAPWRKADKERHGVAIYNFQGSGAPQLSLQIGDVVRIQ-ETCGDWYRG------ 54
Query: 126 YVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAYAVDVEYEDLQTTTPKP 174
+ QGIFP ++ E + +
Sbjct: 55 -----------------YLIKHKMLQGIFPKSFIHIKEVTVEKRRNTEN 86
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 35.7 bits (83), Expect = 0.001
Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 22/79 (27%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+ + + D++ E I V++ + W G+ +
Sbjct: 11 VAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGE---------------------YQD 49
Query: 145 NLRTGRQGIFPSAYAVDVE 163
+ +GIFP ++ V V+
Sbjct: 50 SNGDVIEGIFPKSF-VAVQ 67
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 35.8 bits (83), Expect = 0.002
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 27/93 (29%)
Query: 81 EATHRSLHKFIPRHF-DEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTP 139
+ + + F E+ L+ GD +++S + W K
Sbjct: 2 DPKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAK------------------- 42
Query: 140 WMLRVNLRTGRQGIFPSAYAVDVEYEDLQTTTP 172
L ++G P+AY Y+D + T P
Sbjct: 43 -----LLDGSKEGWVPTAYM--TPYKDTRNTVP 68
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 38.8 bits (89), Expect = 0.002
Identities = 18/139 (12%), Positives = 37/139 (26%), Gaps = 26/139 (18%)
Query: 28 QETDSTIDSDTERYYPSIDSGLSLVSHHNLHDSTISSRSASPVTLPPSKLELLEATHRSL 87
+ P + + S A+ LP ++ + A
Sbjct: 186 PHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQK 245
Query: 88 HKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRVNLR 147
+ LE+GD + V+ + EG+
Sbjct: 246 RVPCAYDKTALALEVGDIVKVTRMNINGQWEGEV-------------------------- 279
Query: 148 TGRQGIFPSAYAVDVEYED 166
GR+G+FP + + ++
Sbjct: 280 NGRKGLFPFTHVKIFDPQN 298
Score = 34.6 bits (78), Expect = 0.029
Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 25/75 (33%)
Query: 84 HRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLR 143
R+L+ F +++ + G+ + + + E+ W +
Sbjct: 128 VRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSAR----------------------- 164
Query: 144 VNLRTGRQGIFPSAY 158
+ GR G+ P Y
Sbjct: 165 --NKDGRVGMIPVPY 177
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 36.4 bits (84), Expect = 0.002
Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 36/119 (30%)
Query: 63 SSRSASPVTLPPSKLELLEATHRSLHKFIPRHF------DEVELEIGDPIYVSNEA-EDL 115
S S + K+ L A + + P E+ L G +YV + ED
Sbjct: 3 SGSSGTSKQRYSGKVHLCVA----RYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDG 58
Query: 116 WCEGKAKESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAYAVDVEYEDLQTTTPKP 174
+ EG+ L G++G+ PS + V+ + + +
Sbjct: 59 FYEGE-------------------------LLDGQRGLVPSNFVDFVQDNESRLASTSG 92
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 35.8 bits (83), Expect = 0.002
Identities = 10/72 (13%), Positives = 17/72 (23%), Gaps = 26/72 (36%)
Query: 87 LHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRVNL 146
P D ++L+ GD I + ++ G
Sbjct: 17 DFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLN------------------------ 52
Query: 147 RTGRQGIFPSAY 158
+ G F Y
Sbjct: 53 --NKVGTFKFIY 62
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 35.7 bits (83), Expect = 0.002
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+L+ + + EV ++ GD + + N W + V
Sbjct: 9 LALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKV-----------------------EV 45
Query: 145 NLRTGRQGIFPSAY 158
N RQG P+AY
Sbjct: 46 N---DRQGFVPAAY 56
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.002
Identities = 60/382 (15%), Positives = 107/382 (28%), Gaps = 119/382 (31%)
Query: 7 TQPPHSVPSLADELGDLSPWSQETDSTIDSD-------------------TERYYPSIDS 47
+ + S+ EL L + + T R+ D
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 48 GLSLVSHHNLHDSTISSRSASPVTLPPSKLELL-EATHRSLHKFIPRHFDEVELEIGDPI 106
+ + H IS S P LL + +PR E+ +P
Sbjct: 281 LSAATTTH------ISLDHHSMTLTPDEVKSLLLKYLDCRPQD-LPR-----EVLTTNPR 328
Query: 107 YVSNEAEDL------W-------CEGKAKESTYVPVVKASSRLPTPWMLRVNLRTGRQGI 153
+S AE + W C+ ++++S + P R R +
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTT------IIESSLNVLEPAEYRKMFD--RLSV 380
Query: 154 FPSAYAVDVEYEDLQTTTPKPKRERFLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPH 213
FP + + L + + V HK + V Q +++
Sbjct: 381 FPPS--AHIPTILLSLIWFDVIKSD-----VMVVVNKLHKYSLVEKQP----KESTISIP 429
Query: 214 SCILEVSDEGLRMVEKSRPGQHRKV-------RGLD-----------YFYSLKNVMFCGF 255
S LE L++ ++ HR + + D YFYS G
Sbjct: 430 SIYLE-----LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS-----HIGH 479
Query: 256 HPREP-----------CYLGFISKHPNMQRFA----CHVFLASESTRPVAEAVGRAFQRF 300
H + +L F RF H A ++ + + + +F
Sbjct: 480 HLKNIEHPERMTLFRMVFLDF--------RFLEQKIRHDSTAWNASGSILNTLQQL--KF 529
Query: 301 YEKFIETAFPIEDIYIE--EDF 320
Y+ +I P + + DF
Sbjct: 530 YKPYICDNDPKYERLVNAILDF 551
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 35.4 bits (82), Expect = 0.002
Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 28/88 (31%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+L+ + DE+ + GD I V + + W G
Sbjct: 10 VALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGS------------------------ 45
Query: 145 NLRTGRQGIFPSAYAVDVEYEDLQTTTP 172
+ G++G FP+ + V E L P
Sbjct: 46 -IGKGQEGYFPANH---VASETLYQELP 69
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 35.3 bits (82), Expect = 0.002
Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 25/74 (33%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+++ F ++ LE G + + + W +
Sbjct: 6 VAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRAR------------------------ 41
Query: 145 NLRTGRQGIFPSAY 158
+ G +G PS Y
Sbjct: 42 -DKYGSEGYIPSNY 54
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 34.9 bits (81), Expect = 0.002
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 25/74 (33%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
++L+ + + DE+ G I+ ++ W +G
Sbjct: 11 KALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKG------------------------- 45
Query: 145 NLRTGRQGIFPSAY 158
+ T Q FPS Y
Sbjct: 46 DYGTRIQQYFPSNY 59
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 27/75 (36%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYV-SNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLR 143
+++ + + DE+ ++ GD I V + W G+
Sbjct: 4 EAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECD--------------------- 42
Query: 144 VNLRTGRQGIFPSAY 158
G +G+FP++Y
Sbjct: 43 -----GLKGLFPTSY 52
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 34.5 bits (80), Expect = 0.004
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
++L F P+ E+ GD I+V + ++ W +G
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH---------------------- 43
Query: 145 NLRTGRQGIFPSAY 158
G+ G+FP Y
Sbjct: 44 ----GQTGMFPRNY 53
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 35.1 bits (81), Expect = 0.004
Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 31/113 (27%)
Query: 63 SSRSASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAK 122
S S S + L + A L+ F +E+ + G+ I V ++++ W +G+
Sbjct: 3 SGSSGSEIQLNNKVARKVRA----LYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENH 58
Query: 123 ESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAY-AVDVEYEDLQTTTPKP 174
G+FPS + ++ E P
Sbjct: 59 --------------------------RGIGLFPSNFVTTNLNIETEAAAVSGP 85
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 34.6 bits (80), Expect = 0.004
Identities = 13/95 (13%), Positives = 31/95 (32%), Gaps = 28/95 (29%)
Query: 64 SRSASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKE 123
+ + E + R+++ F +E+ + G+ I V ++++ W +G+
Sbjct: 2 GHHHHHHSHMNHQHEARKV--RAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETH- 58
Query: 124 STYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAY 158
G+FPS +
Sbjct: 59 -------------------------QGIGLFPSNF 68
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 34.2 bits (79), Expect = 0.004
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 18/74 (24%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+L+ + + EV ++ GD + + N W + + K +
Sbjct: 5 LALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITV------------------N 46
Query: 145 NLRTGRQGIFPSAY 158
RQG P+AY
Sbjct: 47 GKTYERQGFVPAAY 60
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 34.7 bits (80), Expect = 0.004
Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 29/93 (31%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+L+ + + EV ++ GD + + N W W + V
Sbjct: 6 LALYDYQEKSPREVTMKKGDILTLLNSTNKDW-----------------------WKVEV 42
Query: 145 NLRTGRQGIFPSAY---AVDVEYEDLQTTTPKP 174
N RQG P+AY + + P
Sbjct: 43 N---DRQGFVPAAYVKKLDPAQSASRENLGGPP 72
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 34.7 bits (80), Expect = 0.004
Identities = 12/97 (12%), Positives = 27/97 (27%), Gaps = 28/97 (28%)
Query: 63 SSRSASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDL-WCEGKA 121
SS S+ P++ + + E+ GD + + E+ W K
Sbjct: 2 SSGSSGR---MPTRRWAPGTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVK- 57
Query: 122 KESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAY 158
+ +G++G+ +
Sbjct: 58 -----------------------HHTSGQEGLLAAGA 71
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 34.1 bits (79), Expect = 0.005
Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
R F + E+ L+ GD +Y+ E + W EG+
Sbjct: 5 RLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHH---------------------- 42
Query: 145 NLRTGRQGIFPSAY 158
GR GIFP+ Y
Sbjct: 43 ----GRLGIFPANY 52
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 34.1 bits (79), Expect = 0.005
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+L + +++E + GD I V ++ + W EG
Sbjct: 9 EALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEG-----------------------ES 45
Query: 145 NLRTGRQGIFPSAY 158
G+ GIFP +
Sbjct: 46 K---GKVGIFPKVF 56
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 34.1 bits (79), Expect = 0.005
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
R L+ F P + E+ + GD I ++N+ ++ W EG +
Sbjct: 7 RGLYDFEPENQGELGFKEGDIITLTNQIDENWYEG-----------------------MI 43
Query: 145 NLRTGRQGIFPSAY 158
+ G G FP Y
Sbjct: 44 H---GESGFFPINY 54
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 34.2 bits (79), Expect = 0.006
Identities = 18/102 (17%), Positives = 28/102 (27%), Gaps = 34/102 (33%)
Query: 73 PPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKA 132
S ++EA + + R E+ GD + + A W G
Sbjct: 4 GSSGEGVVEA--VACFAYTGRTAQELSFRRGDVLRLHERASSDWWRG------------- 48
Query: 133 SSRLPTPWMLRVNLRTGRQGIFPSAYAVDVEYEDLQTTTPKP 174
N G +G+ P Y + L T K
Sbjct: 49 ----------EHN---GMRGLIPHKY---IT---LPAGTEKQ 71
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 33.7 bits (78), Expect = 0.006
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
R+L+ F DE+ G+ + V + + W G R+
Sbjct: 5 RALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTG-----------------------RL 41
Query: 145 NLRTGRQGIFPSAY 158
+ + G+FP+ Y
Sbjct: 42 H---NKLGLFPANY 52
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 33.7 bits (78), Expect = 0.006
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+ +H DE+ + +G+ I + + W EG+
Sbjct: 5 IVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQIN---------------------- 42
Query: 145 NLRTGRQGIFPSAY 158
GR+G+FP +
Sbjct: 43 ----GRRGLFPDNF 52
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 34.4 bits (79), Expect = 0.006
Identities = 13/94 (13%), Positives = 26/94 (27%), Gaps = 29/94 (30%)
Query: 83 THRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWML 142
++ + + E+ G + V + E W W +
Sbjct: 10 SYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGW-----------------------WYV 46
Query: 143 RVNLRTGRQGIFPSAYAVDVEYEDLQTTTPKPKR 176
R +G PS Y + ++ + P K
Sbjct: 47 RFG---ELEGWAPSHY---LVLDENEQPDPSGKE 74
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 72
Score = 34.2 bits (79), Expect = 0.006
Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 27/75 (36%)
Query: 85 RSLHKFIPRHFDEVELEIGDPI-YVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLR 143
++L+ H E+ G V E W EG
Sbjct: 14 KALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEG-----------------------T 50
Query: 144 VNLRTGRQGIFPSAY 158
+N G+ G+ P Y
Sbjct: 51 LN---GKTGLIPENY 62
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 33.7 bits (78), Expect = 0.006
Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
++L + ++ +++ GD I + + ++ W +G +
Sbjct: 11 KALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQG-----------------------EI 47
Query: 145 NLRTGRQGIFPSAY 158
N G GIFP++
Sbjct: 48 N---GVSGIFPASS 58
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 33.8 bits (78), Expect = 0.006
Identities = 8/74 (10%), Positives = 19/74 (25%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
++ + ++ G+ I + + W G+
Sbjct: 11 VAIADYAATDETQLSFLRGEKILILRQTTADWWWGE------------------------ 46
Query: 145 NLRTGRQGIFPSAY 158
R G G P+ +
Sbjct: 47 --RAGCCGYIPANH 58
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 33.3 bits (77), Expect = 0.007
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 29/80 (36%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEA-EDLWCEGKAKESTYVPVVKASSRLPTPWMLR 143
R+L+ + + DE+ + GD + E E WC G+
Sbjct: 7 RALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGR----------------------- 43
Query: 144 VNLRTGRQGIFPSAYAVDVE 163
L +G+ G++P+ Y VE
Sbjct: 44 --LDSGQLGLYPANY---VE 58
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane,
nuclear protein, phosphorylation, polymorphism,
transport, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 33.7 bits (78), Expect = 0.008
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 24/74 (32%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+ F E+ G+ I + + ++ W EG+
Sbjct: 11 IAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIP---------------------- 48
Query: 145 NLRTGRQGIFPSAY 158
T RQGIFP Y
Sbjct: 49 --GTSRQGIFPITY 60
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 34.3 bits (79), Expect = 0.008
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 25/72 (34%)
Query: 87 LHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRVNL 146
L+ ++ D++ + GD + V E+ + W + + +L
Sbjct: 9 LYDYVSWSPDDLSFQKGDQMVVLEESGE-WWKAR------------------------SL 43
Query: 147 RTGRQGIFPSAY 158
T ++G PS Y
Sbjct: 44 ATRKEGYIPSNY 55
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 36.7 bits (83), Expect = 0.008
Identities = 24/167 (14%), Positives = 47/167 (28%), Gaps = 34/167 (20%)
Query: 1 MALPAFTQPPHSVPSLADELGDLSPWSQETDSTIDSDTERYYPSIDSGLSLVSHHNLHDS 60
P + S + ++ + S+ + S + S
Sbjct: 340 KPSSTLNVPSNPAQSAQSQSSYNPFEDEDDTGSTVSEKDDTKAKNVSSYEKTQSYPTDWS 399
Query: 61 TISSRSASPVTLPPS--------KLELLEATHRSLHKFIPRHFDEVELEIGDPIYV-SNE 111
S + T E R+L+ + + DE+ + GD + +E
Sbjct: 400 DDESNNPFSSTDANGDSNPFDDDATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDE 459
Query: 112 AEDLWCEGKAKESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAY 158
E WC+G+ L G+ G++P+ Y
Sbjct: 460 DEQGWCKGR-------------------------LDNGQVGLYPANY 481
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 33.3 bits (77), Expect = 0.008
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 23/74 (31%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+ L+ ++ + DE+ + GD I + W
Sbjct: 5 KVLYAYVQKDDDEITITPGDKISLVARDTGSG-----------------------WTKIN 41
Query: 145 NLRTGRQGIFPSAY 158
N TG G+ P+ Y
Sbjct: 42 NDTTGETGLVPTTY 55
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein
2A, endophilin 1, EEN-B1, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 33.8 bits (78), Expect = 0.009
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
R+L+ F P + E+ + GD I ++N+ ++ W EG +
Sbjct: 11 RALYDFEPENEGELGFKEGDIITLTNQIDENWYEG-----------------------ML 47
Query: 145 NLRTGRQGIFPSAY 158
+ G G FP Y
Sbjct: 48 H---GHSGFFPINY 58
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 33.3 bits (77), Expect = 0.009
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+L F E+ + GD I++ + W EG V
Sbjct: 8 EALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEG-----------------------TV 44
Query: 145 NLRTGRQGIFPSAY 158
G GIFP ++
Sbjct: 45 R---GATGIFPLSF 55
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 33.3 bits (77), Expect = 0.009
Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 25/74 (33%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
R+L F +++ + GD + + ++ E+ W +
Sbjct: 5 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE------------------------ 40
Query: 145 NLRTGRQGIFPSAY 158
G++G+ P Y
Sbjct: 41 -DSEGKRGMIPVPY 53
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein;
SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 68
Score = 33.4 bits (77), Expect = 0.009
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+ L+ F R+ +E+ + + + V + W W LR
Sbjct: 11 KILYDFTARNANELSVLKDEVLEVLEDGRQ-W-----------------------WKLR- 45
Query: 145 NLRTGRQGIFPSAY 158
R+G+ G P
Sbjct: 46 -SRSGQAGYVPCNI 58
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 32.9 bits (76), Expect = 0.010
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
++L F P+ E+ + GD I + N+ + W EG ++
Sbjct: 6 QALFDFNPQESGELAFKRGDVITLINKDDPNWWEG-----------------------QL 42
Query: 145 NLRTGRQGIFPSAY 158
N R+GIFPS Y
Sbjct: 43 N---NRRGIFPSNY 53
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 33.4 bits (77), Expect = 0.010
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 29/82 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+ ++ R E+ + G + + A D W EG R
Sbjct: 13 IAKFDYVGRTARELSFKKGASLLLYQRASDDWWEG-----------------------RH 49
Query: 145 NLRTGRQGIFPSAYAVDVEYED 166
N G G+ P Y + +D
Sbjct: 50 N---GIDGLIPHQY---IVVQD 65
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 33.4 bits (77), Expect = 0.010
Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 25/74 (33%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
++ F + ++ + G+ + V + D W K
Sbjct: 14 IAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAK------------------------ 49
Query: 145 NLRTGRQGIFPSAY 158
G +G+ P Y
Sbjct: 50 -DAKGNEGLVPRTY 62
>3d8d_A Amyloid beta A4 precursor protein-binding family 1; alpha-beta
structure, phosphotyrosine binding domain; 2.20A {Homo
sapiens} PDB: 3d8e_A 3d8f_A
Length = 148
Score = 35.1 bits (80), Expect = 0.010
Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 25/143 (17%)
Query: 179 FLLGYLGSVETSA-HKGNAVICQAVHK-IRQTQHRPHS--------------CILEVSDE 222
F + LG VE + AV+ IRQ + ++ +L++ DE
Sbjct: 5 FAVRSLGWVEMTEEELAPGRSSVAVNNCIRQLSYHKNNLHDPMSGGWGEGKDLLLQLEDE 64
Query: 223 GLRMVEKSRPGQHRKVRGLDYFYSLKNVMFCGFHPREPCYLGF--ISKHPNMQRFACHVF 280
L++VE + L + + ++ G F +++ Q CHVF
Sbjct: 65 TLKLVEPQS-------QALLHAQPIISIRVWGVGRDSGRERDFAYVARDKLTQMLKCHVF 117
Query: 281 LASESTRPVAEAVGRAFQRFYEK 303
+ +A ++ + +
Sbjct: 118 RCEAPAKNIATSLHEICSKIMAE 140
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 34.1 bits (78), Expect = 0.011
Identities = 16/118 (13%), Positives = 31/118 (26%), Gaps = 35/118 (29%)
Query: 66 SASPVTLPPSKLELLEATHRSLHKFIPRHF--------DEVELEIGDPIYVSNEA-EDLW 116
S+ P EL +L + P +E+ + G I V + D +
Sbjct: 2 SSGSSGTDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGF 61
Query: 117 CEGKAKESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAYAVDVEYEDLQTTTPKP 174
G+ R G+ P +++ +D +
Sbjct: 62 YRGET--------------------------CARLGLIPCNMVSEIQADDEEMMDQSG 93
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2;
STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 33.0 bits (76), Expect = 0.011
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
R+L+ F +E+ + G+ I V ++++ W +G+
Sbjct: 9 RALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENH---------------------- 46
Query: 145 NLRTGRQGIFPSAY 158
G+FPS +
Sbjct: 47 ----RGTGLFPSNF 56
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 33.4 bits (77), Expect = 0.012
Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 28/97 (28%)
Query: 62 ISSRSASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKA 121
++ + ++ A +L F E+ + GD I++ + W EG
Sbjct: 1 MNHKVHHHHHHHMDRMAAPRA--EALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEG-- 56
Query: 122 KESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAY 158
V G GIFP ++
Sbjct: 57 ---------------------TVR---GATGIFPLSF 69
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 33.5 bits (77), Expect = 0.013
Identities = 16/106 (15%), Positives = 29/106 (27%), Gaps = 30/106 (28%)
Query: 72 LPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYV-SNEAEDLWCEGKAKESTYVPVV 130
+ P R+L + + + D I + + E+ W G+
Sbjct: 1 MGPLGSPEFAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLN-------- 52
Query: 131 KASSRLPTPWMLRVNLRTGRQGIFPSAYAVDVEYEDLQTTTPKPKR 176
G++G FP + VE P+P
Sbjct: 53 ------------------GKEGSFPVDH---VEILLSDVPPPQPVH 77
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 33.1 bits (76), Expect = 0.013
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 25/91 (27%)
Query: 68 SPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYV 127
+P S E E +L+ + E+ L + Y+ + +E W
Sbjct: 7 TPEDNRRSFQEPEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHW----------- 55
Query: 128 PVVKASSRLPTPWMLRVNLRTGRQGIFPSAY 158
W ++ + G +G PS+Y
Sbjct: 56 ------------WRVQ--DKNGHEGYAPSSY 72
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 33.1 bits (76), Expect = 0.013
Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 28/95 (29%)
Query: 64 SRSASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKE 123
S +S + A +L+ + DE+ + D I +D W G K
Sbjct: 2 SSGSSGTYDEYENDLGITA--VALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK- 58
Query: 124 STYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAY 158
GR G+FP+ Y
Sbjct: 59 -------------------------GRYGLFPANY 68
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 35.4 bits (81), Expect = 0.014
Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 29/123 (23%)
Query: 43 PSIDSGLSLVSHHNLHDSTISSRSASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEI 102
+S LV +H + + + ++ ++L F P+ E+
Sbjct: 123 VKFNSLNELVDYHRSTSVSRNQQIFLR---DIEQVPQQPTYVQALFDFDPQEDGELGFRR 179
Query: 103 GDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAYAVDV 162
GD I+V + ++ W +G G+ G+FP Y V
Sbjct: 180 GDFIHVMDNSDPNWWKGAC--------------------------HGQTGMFPRNYVTPV 213
Query: 163 EYE 165
Sbjct: 214 NRN 216
Score = 31.6 bits (71), Expect = 0.23
Identities = 18/94 (19%), Positives = 25/94 (26%), Gaps = 25/94 (26%)
Query: 87 LHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRVNL 146
+ F DE+ + GD + V NE D W
Sbjct: 6 KYDFKATADDELSFKRGDILKVLNEECDQN-----------------------WYKA--E 40
Query: 147 RTGRQGIFPSAYAVDVEYEDLQTTTPKPKRERFL 180
G+ G P Y + P+ K E L
Sbjct: 41 LNGKDGFIPKNYIEMKPHPWFFGKIPRAKAEEML 74
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 32.6 bits (75), Expect = 0.014
Identities = 16/86 (18%), Positives = 25/86 (29%), Gaps = 30/86 (34%)
Query: 73 PPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKA 132
P E A ++ R E+ + G + + + A + W EG
Sbjct: 2 PLGSPEFAIA----KFDYVGRSARELSFKKGASLLLYHRASEDWWEG------------- 44
Query: 133 SSRLPTPWMLRVNLRTGRQGIFPSAY 158
R N G G+ P Y
Sbjct: 45 ----------RHN---GIDGLVPHQY 57
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 33.1 bits (76), Expect = 0.014
Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 23/74 (31%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
++++ + DE+ G+ I V+ E + W W+ +
Sbjct: 14 KTIYDCQADNDDELTFIEGEVIIVTGEEDQEW-----------------------WIGHI 50
Query: 145 NLRTGRQGIFPSAY 158
+ R+G+FP ++
Sbjct: 51 EGQPERKGVFPVSF 64
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 33.3 bits (76), Expect = 0.015
Identities = 10/96 (10%), Positives = 30/96 (31%), Gaps = 26/96 (27%)
Query: 63 SSRSASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAK 122
S +L + E + + + E++++ + +++ ++++ W + +
Sbjct: 13 DYNSLKKGSLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWW---RVR 69
Query: 123 ESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAY 158
+ R G PS Y
Sbjct: 70 NAA-----------------------NRTGYVPSNY 82
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 32.6 bits (75), Expect = 0.016
Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 25/74 (33%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
R+L F +++ + GD + + ++ E+ W +
Sbjct: 7 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE------------------------ 42
Query: 145 NLRTGRQGIFPSAY 158
G++G+ P Y
Sbjct: 43 -DSEGKRGMIPVPY 55
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm,
SH3 domain, signaling protein; NMR {Homo sapiens} PDB:
2rol_A
Length = 68
Score = 32.7 bits (75), Expect = 0.016
Identities = 11/87 (12%), Positives = 26/87 (29%), Gaps = 30/87 (34%)
Query: 72 LPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVK 131
L L+ + + F R+ E+ ++ D + V +++ W + +
Sbjct: 3 LGSGALKWVLC----NYDFQARNSSELSVKQRDVLEVLDDSRK-WWKVR----------- 46
Query: 132 ASSRLPTPWMLRVNLRTGRQGIFPSAY 158
G++G P
Sbjct: 47 --------------DPAGQEGYVPYNI 59
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 33.1 bits (76), Expect = 0.017
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 30/97 (30%)
Query: 64 SRSASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDL--WCEGKA 121
S +S + + +E +L+ F + ++ + GD I V ++ + W EG
Sbjct: 2 SSGSSGHERVGNLNQPIEV--TALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEG-- 57
Query: 122 KESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAY 158
++ G+ GIFP+ Y
Sbjct: 58 ---------------------KLR---GQTGIFPANY 70
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 34.3 bits (78), Expect = 0.017
Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 27/95 (28%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYV-SNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLR 143
++ + F R E+ L+ GD I + + + + W G+
Sbjct: 9 KARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIY--------------------- 47
Query: 144 VNLRTGRQGIFPSAYAVDVEYEDLQTTTPKPKRER 178
GR G FPS Y + E L T
Sbjct: 48 -----GRIGWFPSNYVEEDYSEYLPETGGGSGSSM 77
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A
1bbz_A 1awo_A
Length = 63
Score = 32.6 bits (75), Expect = 0.018
Identities = 13/75 (17%), Positives = 22/75 (29%), Gaps = 27/75 (36%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSN-EAEDLWCEGKAKESTYVPVVKASSRLPTPWMLR 143
+L+ F+ + + + G+ + V WCE +
Sbjct: 9 VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQT---------------------- 46
Query: 144 VNLRTGRQGIFPSAY 158
QG PSAY
Sbjct: 47 ----KNGQGWVPSAY 57
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 32.5 bits (75), Expect = 0.018
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 27/75 (36%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIY-VSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLR 143
+ + H DE+ + +G+ I V E+ W EG+
Sbjct: 5 IVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELN--------------------- 43
Query: 144 VNLRTGRQGIFPSAY 158
GR+G+FP +
Sbjct: 44 -----GRRGMFPDNF 53
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 32.6 bits (75), Expect = 0.021
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 27/74 (36%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+L+ + ++ G+ I V+ + + W G +
Sbjct: 12 IALYPYSSVEPGDLTFTEGEEILVTQKDGE-WWTG-----------------------SI 47
Query: 145 NLRTGRQGIFPSAY 158
R GIFPS Y
Sbjct: 48 G---DRSGIFPSNY 58
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
protein-protein interaction, structural genomics; NMR
{Homo sapiens}
Length = 68
Score = 32.2 bits (74), Expect = 0.022
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+ L++F R+ E+ + G+ + V + ++ W K
Sbjct: 11 QVLYEFEARNPRELTVVQGEKLEVLDHSKRWW---LVKNE-------------------- 47
Query: 145 NLRTGRQGIFPSAY 158
GR G PS
Sbjct: 48 ---AGRSGYIPSNI 58
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 35.0 bits (79), Expect = 0.024
Identities = 31/191 (16%), Positives = 52/191 (27%), Gaps = 29/191 (15%)
Query: 14 PSLADELGDLSPWSQETDSTIDSDTERYYPSIDSGLSLVSHHNLHDSTISSRSASPVTLP 73
P+L + L D Y DS + L T +S SP
Sbjct: 109 PALNAYMKSLLSLPVWVLMDEDVRIFFYQSPYDSEQVPQALRRLRPRTRKVKSVSPQGNS 168
Query: 74 PSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKAS 133
++ A +L F E+ + GD I++ + W EG +
Sbjct: 169 VDRMAAPRA--EALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVR----------- 215
Query: 134 SRLPTPWMLRVNLRTGRQGIFPSAYAVDVEYEDLQTTTPKPKRERFLLGYLGSVETSAHK 193
G GIFP ++ V + + + P + S
Sbjct: 216 ---------------GATGIFPLSF-VKILKDFPEEDDPTNWLRCYYYEDTISTIKDIAV 259
Query: 194 GNAVICQAVHK 204
+ + K
Sbjct: 260 EEDLSSTPLLK 270
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 34.8 bits (79), Expect = 0.026
Identities = 16/112 (14%), Positives = 33/112 (29%), Gaps = 26/112 (23%)
Query: 63 SSRSASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAK 122
R + +L + + + KF ++ E G+ + + ++ W E +
Sbjct: 129 KMRVLTEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEAR-- 186
Query: 123 ESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAYAVDVEYEDLQTTTPKP 174
G G+ P+ Y V ++ E T K
Sbjct: 187 -----------------------NALGTTGLVPANY-VQIQMEFHNDRTSKG 214
Score = 31.3 bits (70), Expect = 0.34
Identities = 18/122 (14%), Positives = 33/122 (27%), Gaps = 28/122 (22%)
Query: 39 ERYYPSIDSGLSLVSHHNLHDSTISSRSASPVTLPPSKLELLEATHRSLHKFIPRHFDEV 98
E + G S S + SAS + L A + +P +D
Sbjct: 205 EFHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPNAYDPT 264
Query: 99 EL--EIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFPS 156
+L + G + V+ + + + + G+ G P
Sbjct: 265 QLRVKKGQTVLVTQKMSNGMYKAELD--------------------------GQIGSVPH 298
Query: 157 AY 158
Y
Sbjct: 299 TY 300
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 32.8 bits (75), Expect = 0.026
Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 23/95 (24%)
Query: 64 SRSASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKE 123
S +S + + + A R+ + F+ +E+ GD + ++ + + G
Sbjct: 2 SSGSSGTNWASGEDDHVVA--RAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRG---- 55
Query: 124 STYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAY 158
W L +L G+ P+ Y
Sbjct: 56 ----------------W-LLASLDGQTTGLIPANY 73
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 32.3 bits (74), Expect = 0.028
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
++L F DE+ D I + ++ ++ G +
Sbjct: 11 KALLDFERHDDDELGFRKNDIITIISQKDEHCWVG-----------------------EL 47
Query: 145 NLRTGRQGIFPSAY 158
N G +G FP+ +
Sbjct: 48 N---GLRGWFPAKF 58
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 32.3 bits (74), Expect = 0.029
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 29/77 (37%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYV---SNEAEDLWCEGKAKESTYVPVVKASSRLPTPWM 141
++L+ + + DE+ G I + N+ +D + EG
Sbjct: 12 KALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEG---------------------- 49
Query: 142 LRVNLRTGRQGIFPSAY 158
N GR G+FPS
Sbjct: 50 -EFN---GRIGVFPSVL 62
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 32.5 bits (74), Expect = 0.032
Identities = 21/95 (22%), Positives = 28/95 (29%), Gaps = 29/95 (30%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYV--SNEAEDLWCEGKAKESTYVPVVKASSRLPTPWML 142
R+L+ F R+ DE+ GD I V E W G +
Sbjct: 9 RALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQ-------------------- 48
Query: 143 RVNLRTGRQGIFPSAYAVDVEYEDLQTTTPKPKRE 177
G G FP Y V+ PK+
Sbjct: 49 ------GNFGWFPCNY-VEKMPSSENEKAVSPKKA 76
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 31.8 bits (73), Expect = 0.032
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 24/74 (32%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+ F E+ G+ I + + ++ W EG+
Sbjct: 10 IAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIP---------------------- 47
Query: 145 NLRTGRQGIFPSAY 158
T RQGIFP Y
Sbjct: 48 --GTSRQGIFPITY 59
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 31.8 bits (73), Expect = 0.033
Identities = 10/78 (12%), Positives = 26/78 (33%), Gaps = 26/78 (33%)
Query: 81 EATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPW 140
E + + + E++++ + +++ ++++ W W
Sbjct: 4 EVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKT-W-----------------------W 39
Query: 141 MLRVNLRTGRQGIFPSAY 158
+R R G PS Y
Sbjct: 40 RVR--NAANRTGYVPSNY 55
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 85
Score = 32.4 bits (74), Expect = 0.033
Identities = 15/91 (16%), Positives = 24/91 (26%), Gaps = 28/91 (30%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYV--SNEAEDLWCEGKAKESTYVPVVKASSRLPTPWML 142
+L +I + + GD I + E W G A
Sbjct: 12 IALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAG-------------------- 51
Query: 143 RVNLRTGRQGIFPSAYAVDVEYEDLQTTTPK 173
GR G+FP+ D + +
Sbjct: 52 ------GRSGLFPADIVQPAAAPDFSFSKEQ 76
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 32.0 bits (73), Expect = 0.040
Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 37/103 (35%)
Query: 62 ISSRSASPVTLPPSKLELLEATHRSLHKFIPRHFD-EVELEIGDPIYV-----SNEAEDL 115
IS + P+ PSKLE A L+ F+P + + EV L+ GD + + +
Sbjct: 1 ISEFGSEPI--DPSKLEFARA----LYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSD 54
Query: 116 WCEGKAKESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAY 158
W + + + G G P Y
Sbjct: 55 WWKVR-------------------------TKNGNIGYIPYNY 72
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 31.6 bits (72), Expect = 0.050
Identities = 10/74 (13%), Positives = 24/74 (32%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
++ + E+ + GD I V + + W G ++
Sbjct: 14 EAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWG-----------------------QI 50
Query: 145 NLRTGRQGIFPSAY 158
+ +G FP+++
Sbjct: 51 D---DEEGWFPASF 61
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 31.6 bits (72), Expect = 0.056
Identities = 8/64 (12%), Positives = 16/64 (25%), Gaps = 27/64 (42%)
Query: 96 DEVELEIGDPIYVSNEA-EDLWCEGKAKESTYVPVVKASSRLPTPWMLRVNLRTGRQGIF 154
+ L GD + V + + G + G +G+
Sbjct: 29 GRLALRAGDVVMVYGPMDDQGFYYG-----------------------ELG---GHRGLV 62
Query: 155 PSAY 158
P+
Sbjct: 63 PAHL 66
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 31.0 bits (71), Expect = 0.060
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 28/76 (36%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNE--AEDLWCEGKAKESTYVPVVKASSRLPTPWML 142
R+L + + DE+ G+ I++ ++ E W +G
Sbjct: 10 RTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKG----------------------- 46
Query: 143 RVNLRTGRQGIFPSAY 158
+N G++G+FP +
Sbjct: 47 ELN---GKEGVFPDNF 59
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 31.6 bits (72), Expect = 0.068
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 28/100 (28%)
Query: 59 DSTISSRSASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCE 118
S + S P+ + + +++ + + DE+ G I V N+ + W +
Sbjct: 14 ASHVKLLGPSSERATPAFHPVCQV--IAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQ 71
Query: 119 GKAKESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAY 158
G+ G G+FPS Y
Sbjct: 72 GEIN--------------------------GVTGLFPSNY 85
Score = 26.6 bits (59), Expect = 3.8
Identities = 5/32 (15%), Positives = 14/32 (43%)
Query: 147 RTGRQGIFPSAYAVDVEYEDLQTTTPKPKRER 178
+G++G FP+++ + + T +
Sbjct: 5 SSGQKGWFPASHVKLLGPSSERATPAFHPVCQ 36
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 31.1 bits (71), Expect = 0.071
Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 29/77 (37%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYV---SNEAEDLWCEGKAKESTYVPVVKASSRLPTPWM 141
R+L+ P DE+ GD + + + W +
Sbjct: 11 RALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLH------------------- 51
Query: 142 LRVNLRTGRQGIFPSAY 158
GRQG+ P+
Sbjct: 52 -------GRQGLAPANR 61
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 30.7 bits (70), Expect = 0.074
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+L+ + DE+ + D I +D W G K
Sbjct: 13 IALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK---------------------- 50
Query: 145 NLRTGRQGIFPSAY 158
GR G+FP+ Y
Sbjct: 51 ----GRYGLFPANY 60
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 31.1 bits (71), Expect = 0.074
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 26/75 (34%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDL-WCEGKAKESTYVPVVKASSRLPTPWMLR 143
+ + F ++ GD + + +D W + K
Sbjct: 15 IAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAK----------------------- 51
Query: 144 VNLRTGRQGIFPSAY 158
+ GR+GI P+ Y
Sbjct: 52 --NKVGREGIIPANY 64
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 33.0 bits (75), Expect = 0.079
Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 27/93 (29%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
R++ + E+ L GD + V ++E W + K
Sbjct: 15 RAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMK---------------------- 52
Query: 145 NLRTGRQGIFPSAYAVDVEYEDLQTTTPKPKRE 177
++G P+++ ++ +T P+P
Sbjct: 53 ----AKRGWIPASF-LEPLDSPDETEDPEPNYA 80
Score = 31.5 bits (71), Expect = 0.24
Identities = 16/104 (15%), Positives = 30/104 (28%), Gaps = 27/104 (25%)
Query: 73 PPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKA 132
+ + ++ + DEV L G+ + V ++ D W +
Sbjct: 73 EDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKD---------- 122
Query: 133 SSRLPTPWMLRVNLRTGRQGIFPSAYAVDVEYEDLQTTTPKPKR 176
G FPS Y + +D+ + KR
Sbjct: 123 ----------------DVTGYFPSMY-LQKSGQDVSQAQRQIKR 149
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 31.3 bits (71), Expect = 0.083
Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 37/103 (35%)
Query: 62 ISSRSASPVTLPPSKLELLEATHRSLHKFIPRHFD-EVELEIGDPIYV-----SNEAEDL 115
IS + P+ PSKLE A L+ F+P + + EV L+ GD + + +
Sbjct: 1 ISEFGSEPI--DPSKLEFARA----LYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSD 54
Query: 116 WCEGKAKESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAY 158
W + + + G G P Y
Sbjct: 55 WWKVR-------------------------TKNGNIGYIPYNY 72
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 30.8 bits (70), Expect = 0.087
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 27/64 (42%)
Query: 96 DEVELEIGDPIYVSNEA-EDLWCEGKAKESTYVPVVKASSRLPTPWMLRVNLRTGRQGIF 154
E+ GD I V E ED + G +N G++G+
Sbjct: 29 AELTFCTGDIITVFGEIDEDGFYYG-----------------------ELN---GQKGLV 62
Query: 155 PSAY 158
PS +
Sbjct: 63 PSNF 66
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 33.4 bits (75), Expect = 0.089
Identities = 14/134 (10%), Positives = 36/134 (26%), Gaps = 26/134 (19%)
Query: 38 TERYYPSIDSGLSLVSHHNLHDSTISSRSASPVTLPPSKLELLEATHRSLHKFIPRHFDE 97
+ + S + ++ + LP + + A
Sbjct: 196 SVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKTA 255
Query: 98 VELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSA 157
+ LE+G+ + V+ EG+ G++G FP
Sbjct: 256 LALEVGELVKVTKINVSGQWEGECN--------------------------GKRGHFPFT 289
Query: 158 YAVDVEYEDLQTTT 171
+ ++ ++ +
Sbjct: 290 HVRLLDQQNPEEDF 303
Score = 30.7 bits (68), Expect = 0.57
Identities = 11/96 (11%), Positives = 27/96 (28%), Gaps = 25/96 (26%)
Query: 84 HRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLR 143
R+L F +++ + GD + + ++ E+ W +
Sbjct: 137 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE----------------------- 173
Query: 144 VNLRTGRQGIFPSAYAVDVEYEDLQTTTPKPKRERF 179
G++G+ P Y + +
Sbjct: 174 --DSEGKRGMIPVPYVEKYRPASASVSALIGGNQEG 207
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 77
Score = 30.8 bits (70), Expect = 0.091
Identities = 17/80 (21%), Positives = 24/80 (30%), Gaps = 31/80 (38%)
Query: 96 DEVELEIGDPIYVSNE-AEDLWCEGKAKESTYVPVVKASSRLPTPWMLRVNLRTGRQGIF 154
+E+ + G+ I V+N W EGK G QG+
Sbjct: 25 NELTVTEGEIITVTNPNVGGGWLEGK-------------------------NNKGEQGLV 59
Query: 155 PSAYAVDVEYEDLQTTTPKP 174
P+ Y E L P
Sbjct: 60 PTDY-----VEILPNDGKDP 74
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 30.3 bits (69), Expect = 0.094
Identities = 9/74 (12%), Positives = 23/74 (31%), Gaps = 26/74 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+S + F+ R+ E+ + D + + ++ W + +
Sbjct: 5 KSKYDFVARNSSELSVMKDDVLEILDDRRQ-WWKVRN----------------------- 40
Query: 145 NLRTGRQGIFPSAY 158
+G G P+
Sbjct: 41 --ASGDSGFVPNNI 52
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 32.9 bits (74), Expect = 0.099
Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 25/75 (33%)
Query: 84 HRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLR 143
R+L F +++ + GD + + ++ E+ W +
Sbjct: 139 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE----------------------- 175
Query: 144 VNLRTGRQGIFPSAY 158
G++G+ P Y
Sbjct: 176 --DSEGKRGMIPVPY 188
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 30.3 bits (69), Expect = 0.11
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 29/86 (33%)
Query: 74 PSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDL-WCEGKAKESTYVPVVKA 132
+ + +EA + + F DE+ + GD + V NE D W +
Sbjct: 4 RASVGSMEA--IAKYDFKATADDELSFKRGDILKVLNEECDQNWYKA------------- 48
Query: 133 SSRLPTPWMLRVNLRTGRQGIFPSAY 158
+N G+ G P Y
Sbjct: 49 ----------ELN---GKDGFIPKNY 61
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 30.6 bits (69), Expect = 0.12
Identities = 12/82 (14%), Positives = 22/82 (26%), Gaps = 26/82 (31%)
Query: 96 DEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFP 155
EV ++ GD + + N W + + RQG P
Sbjct: 6 REVTMKKGDILTLLNSTNKDWWKVEVN--------------------------DRQGFVP 39
Query: 156 SAYAVDVEYEDLQTTTPKPKRE 177
+AY ++ +
Sbjct: 40 AAYVKKLDSGTGKELVLALYDY 61
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 29.9 bits (68), Expect = 0.14
Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 28/76 (36%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNE--AEDLWCEGKAKESTYVPVVKASSRLPTPWML 142
+ + + ++ DE+ ++ GD + + N+ + W EG
Sbjct: 11 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEG----------------------- 47
Query: 143 RVNLRTGRQGIFPSAY 158
+N GR+G+FP +
Sbjct: 48 ELN---GRRGVFPDNF 60
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain,
signaling protein; NMR {Homo sapiens}
Length = 72
Score = 30.0 bits (68), Expect = 0.15
Identities = 9/78 (11%), Positives = 27/78 (34%), Gaps = 26/78 (33%)
Query: 81 EATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPW 140
E + ++ + E++++ + +++ ++++ W W
Sbjct: 7 EVVVVAKFDYVAQQEQELDIKKNERLWLLDDSKS-W-----------------------W 42
Query: 141 MLRVNLRTGRQGIFPSAY 158
+R + G PS Y
Sbjct: 43 RVRN--SMNKTGFVPSNY 58
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 29.9 bits (68), Expect = 0.19
Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 24/74 (32%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
+++ F + + G+ + + E + W RV
Sbjct: 11 VAIYHFEGSSEGTISMAEGEDLSLMEEDKGDG-----------------------WT-RV 46
Query: 145 NLRTGRQGIFPSAY 158
+ G +G P++Y
Sbjct: 47 RRKEGGEGYVPTSY 60
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 81
Score = 30.1 bits (68), Expect = 0.19
Identities = 15/97 (15%), Positives = 27/97 (27%), Gaps = 30/97 (30%)
Query: 64 SRSASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYV--SNEAEDLWCEGKA 121
S +S + +A R L+ + + E+ L + I V + W G+
Sbjct: 2 SSGSSGLNDLKESSNNRKA--RVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGE- 58
Query: 122 KESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAY 158
R ++G P Y
Sbjct: 59 -------------------------RGNQKGKVPITY 70
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 29.4 bits (66), Expect = 0.22
Identities = 14/69 (20%), Positives = 19/69 (27%), Gaps = 26/69 (37%)
Query: 90 FIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRVNLRTG 149
++ DE+ L G + V D W G G
Sbjct: 10 YVAEREDELSLVXGSRVTVMEXCSDGWWRGSYN--------------------------G 43
Query: 150 RQGIFPSAY 158
+ G FPS Y
Sbjct: 44 QIGWFPSNY 52
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 29.6 bits (67), Expect = 0.22
Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 29/77 (37%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYV---SNEAEDLWCEGKAKESTYVPVVKASSRLPTPWM 141
++L+ + DE+ GD + V + D W
Sbjct: 7 KALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLC---------------------- 44
Query: 142 LRVNLRTGRQGIFPSAY 158
++ GRQGI P
Sbjct: 45 -SLH---GRQGIVPGNR 57
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 29.7 bits (67), Expect = 0.22
Identities = 14/74 (18%), Positives = 19/74 (25%), Gaps = 21/74 (28%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
L F R +E+ GD +V+ + E W L
Sbjct: 14 VGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATL---------------------LDE 52
Query: 145 NLRTGRQGIFPSAY 158
QG P Y
Sbjct: 53 AGGAVAQGYVPHNY 66
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 29.2 bits (66), Expect = 0.23
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 26/63 (41%)
Query: 96 DEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFP 155
EV ++ GD + + N W + + RQG P
Sbjct: 4 REVTMKKGDILTLLNSTNKDWWKVEVN--------------------------DRQGFVP 37
Query: 156 SAY 158
+AY
Sbjct: 38 AAY 40
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 78
Score = 29.6 bits (67), Expect = 0.26
Identities = 12/87 (13%), Positives = 26/87 (29%), Gaps = 26/87 (29%)
Query: 73 PPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAE-DLWCEGKAKESTYVPVVK 131
L T + ++ + DE+ +E + + V + + + W + + K
Sbjct: 5 SSGTLRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNK--------- 55
Query: 132 ASSRLPTPWMLRVNLRTGRQGIFPSAY 158
G+ G P Y
Sbjct: 56 ----------------VGQVGYVPEKY 66
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB:
1ywp_A 1ywo_A
Length = 61
Score = 29.1 bits (66), Expect = 0.26
Identities = 11/74 (14%), Positives = 19/74 (25%), Gaps = 25/74 (33%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
++L + + DE+ I + + W G
Sbjct: 7 KALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGD------------------------ 42
Query: 145 NLRTGRQGIFPSAY 158
+Q FPS Y
Sbjct: 43 -YGGKKQLWFPSNY 55
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 29.6 bits (67), Expect = 0.27
Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 28/76 (36%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNE--AEDLWCEGKAKESTYVPVVKASSRLPTPWML 142
+ + + ++ DE+ ++ GD + + N+ + W EG
Sbjct: 13 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEG----------------------- 49
Query: 143 RVNLRTGRQGIFPSAY 158
+N GR+G+FP +
Sbjct: 50 ELN---GRRGVFPDNF 62
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 31.6 bits (70), Expect = 0.27
Identities = 20/157 (12%), Positives = 44/157 (28%), Gaps = 21/157 (13%)
Query: 7 TQPPHSVPSLADELGDLSPWSQETDSTIDSDTERYYPSIDSGLSLVSHHNLHDSTISSRS 66
+ + PS E +++ +Q + + S L V + +
Sbjct: 68 PEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVE 127
Query: 67 ASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYV-----SNEAEDLWCEGKA 121
++ H + DE++L+ GD + V E ++ W G
Sbjct: 128 GGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVK 187
Query: 122 KESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAY 158
+ + +G+FP +
Sbjct: 188 ESD----------------WNQHKKLEKCRGVFPENF 208
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 29.8 bits (67), Expect = 0.28
Identities = 19/76 (25%), Positives = 23/76 (30%), Gaps = 23/76 (30%)
Query: 85 RSLHKFIPRHFDEVELEI--GDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWML 142
R+L F H D L + GD I V + D +G ES
Sbjct: 22 RALKDFWNLH-DPTALNVRAGDVITVLEQHPDGRWKGHIHES------------------ 62
Query: 143 RVNLRTGRQGIFPSAY 158
T R G FP
Sbjct: 63 --QRGTDRIGYFPPGI 76
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 28.7 bits (65), Expect = 0.34
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 24/63 (38%)
Query: 96 DEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFP 155
+E+ D I +D W G+ + G +G+FP
Sbjct: 15 NELTFVENDKIINIEFVDDDWWLGE------------------------LEKDGSKGLFP 50
Query: 156 SAY 158
S Y
Sbjct: 51 SNY 53
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 28.8 bits (65), Expect = 0.43
Identities = 12/74 (16%), Positives = 19/74 (25%), Gaps = 25/74 (33%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
++L + + DE+ I + E W G
Sbjct: 10 KALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGD------------------------ 45
Query: 145 NLRTGRQGIFPSAY 158
+Q FPS Y
Sbjct: 46 -YGGKKQLWFPSNY 58
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 29.4 bits (66), Expect = 0.45
Identities = 19/115 (16%), Positives = 31/115 (26%), Gaps = 35/115 (30%)
Query: 63 SSRSASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYV--SNEAEDLWCEGK 120
S S L +++ L+ F +E+ E G+ + V E + W + K
Sbjct: 3 SGSSGLSNGQGSRVLHVVQT----LYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCK 58
Query: 121 AKESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFPSAYAVDVE-YEDLQTTTPKP 174
G+ G+ P Y V D P
Sbjct: 59 NA-------------------------RGQVGLVPKNY---VVVLSDGPALHPAH 85
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 28.9 bits (65), Expect = 0.49
Identities = 9/78 (11%), Positives = 21/78 (26%), Gaps = 30/78 (38%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYV----SNEAEDLWCEGKAKESTYVPVVKASSRLPTPW 140
+++ F R+ +E+ + + + W +
Sbjct: 17 FAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAE-------------------- 56
Query: 141 MLRVNLRTGRQGIFPSAY 158
G++G PS Y
Sbjct: 57 ------VNGKKGYVPSNY 68
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 28.4 bits (64), Expect = 0.53
Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 28/76 (36%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYV--SNEAEDLWCEGKAKESTYVPVVKASSRLPTPWML 142
+ + F R E+ L GD + + + W +G
Sbjct: 11 VARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKG----------------------- 47
Query: 143 RVNLRTGRQGIFPSAY 158
N GR G FPS Y
Sbjct: 48 ETN---GRIGWFPSTY 60
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein;
2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 28.4 bits (64), Expect = 0.56
Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 28/76 (36%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNE--AEDLWCEGKAKESTYVPVVKASSRLPTPWML 142
+ + + ++ DE+ ++ GD + + N+ + W EG
Sbjct: 6 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEG----------------------- 42
Query: 143 RVNLRTGRQGIFPSAY 158
+N GR+G+FP +
Sbjct: 43 ELN---GRRGVFPDNF 55
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 30.1 bits (67), Expect = 0.66
Identities = 11/79 (13%), Positives = 23/79 (29%), Gaps = 26/79 (32%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRV 144
KF ++ E G+ + + ++ W E +
Sbjct: 122 VGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNA---------------------- 159
Query: 145 NLRTGRQGIFPSAYAVDVE 163
G G+ P+ Y V ++
Sbjct: 160 ---LGTTGLVPANY-VQIQ 174
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 30.7 bits (69), Expect = 0.68
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 53 SHHNLHDSTISSRSASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEA 112
SHH H + A + + EA L + E+ + GD I V +
Sbjct: 6 SHHYSHPGGGGEQLAINELISDGSVVCAEA----LWDHVTMDDQELGFKAGDVIEVMDAT 61
Query: 113 EDLWCEG 119
W G
Sbjct: 62 NREWWWG 68
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima}
SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A
1zkg_A* 2iek_A* 1z77_A*
Length = 202
Score = 30.1 bits (68), Expect = 0.72
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 262 YLGFISKHPNMQRFACHVFLASESTRPVAEAVGRAFQRFYEKFIETAFPIEDIYIEED 319
L + + HP F + E R QR + F+ ++D+ + ED
Sbjct: 91 KLEYSASHPEEADFLITLVSVDEGLRKRILLDLEKSQRVFFDFVREK--LKDLDLAED 146
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 27.9 bits (63), Expect = 0.73
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 28/76 (36%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYV--SNEAEDLWCEGKAKESTYVPVVKASSRLPTPWML 142
+L+ F ++ GD I + +++++ W G
Sbjct: 7 VALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTG----------------------- 43
Query: 143 RVNLRTGRQGIFPSAY 158
RVN GR+GIFP+ Y
Sbjct: 44 RVN---GREGIFPANY 56
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 28.4 bits (63), Expect = 0.81
Identities = 14/64 (21%), Positives = 18/64 (28%), Gaps = 25/64 (39%)
Query: 96 DEVELEIGDPIYV-SNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRVNLRTGRQGIF 154
+ L GD + + EAE W EG+ N T G F
Sbjct: 33 GFLRLNPGDIVELTKAEAEHNWWEGR------------------------NTATNEVGWF 68
Query: 155 PSAY 158
P
Sbjct: 69 PCNR 72
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 27.7 bits (62), Expect = 0.92
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 31/80 (38%)
Query: 85 RSLHKFIPRHFD-EVELEIGDPIYV-----SNEAEDLWCEGKAKESTYVPVVKASSRLPT 138
R+L+ F+P + + EV L+ GD + + + W + +
Sbjct: 11 RALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVR------------------ 52
Query: 139 PWMLRVNLRTGRQGIFPSAY 158
+ G G P Y
Sbjct: 53 -------TKNGNIGYIPYNY 65
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV,
signaling protein/signaling protein complex; 1.68A {Mus
musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 28.0 bits (62), Expect = 0.94
Identities = 14/64 (21%), Positives = 18/64 (28%), Gaps = 25/64 (39%)
Query: 96 DEVELEIGDPIYV-SNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRVNLRTGRQGIF 154
+ L GD + + EAE W EG+ N T G F
Sbjct: 25 PFLRLNPGDIVELTKAEAEHNWWEGR------------------------NTATNEVGWF 60
Query: 155 PSAY 158
P
Sbjct: 61 PCNR 64
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 27.6 bits (62), Expect = 1.0
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 27/76 (35%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYV--SNEAEDLWCEGKAKESTYVPVVKASSRLPTPWML 142
++L+ F +E+ E G+ + V E + W + K
Sbjct: 10 QTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNA-------------------- 49
Query: 143 RVNLRTGRQGIFPSAY 158
G+ G+ P Y
Sbjct: 50 -----RGQVGLVPKNY 60
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A
{Saccharomyces cerevisiae}
Length = 70
Score = 27.7 bits (62), Expect = 1.1
Identities = 12/76 (15%), Positives = 21/76 (27%), Gaps = 28/76 (36%)
Query: 85 RSLHKFIPRHFDEVELEI--GDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWML 142
++L+ + D E+ + + VS+ W
Sbjct: 9 KALYPYDADDDDAYEISFEQNEILQVSDIEGRWW-------------------------- 42
Query: 143 RVNLRTGRQGIFPSAY 158
+ G GI PS Y
Sbjct: 43 KARRANGETGIIPSNY 58
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 27.4 bits (61), Expect = 1.7
Identities = 7/63 (11%), Positives = 14/63 (22%), Gaps = 22/63 (34%)
Query: 96 DEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFP 155
+ + G + V + W + + +G P
Sbjct: 24 ETAGFQEGVSMEVLERNPNGWWYCQILDGV----------------------KPFKGWVP 61
Query: 156 SAY 158
S Y
Sbjct: 62 SNY 64
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 28.1 bits (62), Expect = 1.7
Identities = 13/93 (13%), Positives = 23/93 (24%), Gaps = 24/93 (25%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYV----SNEAEDLWCEGKAKESTYVPVVKASSRLPTPW 140
+L ++ + + G +YV W G + Y
Sbjct: 26 VALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFW-GGSVQGDYY-------------- 70
Query: 141 MLRVNLRTGRQGIFPSAY-AVDVEYEDLQTTTP 172
R G FPS+ D + +
Sbjct: 71 ----GDLAARLGYFPSSIVREDQTLKPGKVDVK 99
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 26.6 bits (59), Expect = 2.1
Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 67 ASPVTLPPSKLELLEATHRSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEGK 120
A+ V S + +L+ + + EV ++ GD + + N W + +
Sbjct: 9 AAYVKKLDSGTG--KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE 60
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 26.6 bits (59), Expect = 2.6
Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 26/63 (41%)
Query: 96 DEVELEIGDPIYVSNEAEDLWCEGKAKESTYVPVVKASSRLPTPWMLRVNLRTGRQGIFP 155
EV ++ GD + + N W W + VN RQG P
Sbjct: 14 REVTMKKGDILTLLNSTNKDW-----------------------WKVEVN---DRQGFVP 47
Query: 156 SAY 158
+AY
Sbjct: 48 AAY 50
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 28.2 bits (63), Expect = 3.8
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 85 RSLHKFIPRHFDEVELEIGDPIYVSNEAEDLWCEG 119
++ + ++ DE+ G I V N+ + W +G
Sbjct: 6 IGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKG 40
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 8.7
Identities = 4/8 (50%), Positives = 5/8 (62%)
Query: 10 PHSVPSLA 17
S P+LA
Sbjct: 34 DDSAPALA 41
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.409
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,881,896
Number of extensions: 280472
Number of successful extensions: 1034
Number of sequences better than 10.0: 1
Number of HSP's gapped: 878
Number of HSP's successfully gapped: 213
Length of query: 320
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 226
Effective length of database: 4,077,219
Effective search space: 921451494
Effective search space used: 921451494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)