BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3680
(422 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PRH|A Chain A, Tryptophanyl-Trna Synthetase Val144pro Mutant From B.
Subtilis
pdb|3PRH|B Chain B, Tryptophanyl-Trna Synthetase Val144pro Mutant From B.
Subtilis
Length = 388
Score = 239 bits (611), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 126/328 (38%), Positives = 203/328 (61%), Gaps = 5/328 (1%)
Query: 32 ISFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKE 91
+ Q IFSGIQP+G++ LGNY GA++ + LQ+ + FCIVD H+IT+ Q +L++
Sbjct: 32 FTMKQTIFSGIQPSGSVTLGNYIGAMKQFVELQHD-YNSYFCIVDQHAITVPQDRLELRK 90
Query: 92 NIQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELK 151
NI+ +AA LA G+DP+K+ LF QS+VP H Q W++ C+ + L M + +K +
Sbjct: 91 NIRNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGELERMTQFKDKSKGNE 150
Query: 152 QSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQL-L 210
+GL YP L AADILLY +P G DQ ++ L +L + FN K++ IF IP++ +
Sbjct: 151 AVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAERFNKKYNDIFTIPEVKI 210
Query: 211 PQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPEN 270
P+ ++ SL DP KKMSKSD + + I + D P+ + +K K A+TD V +D EN
Sbjct: 211 PK--VGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKSAVTDSEGIVKFDKEN 268
Query: 271 RPAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSK 330
+P VSNL+T++++ N +++ + + G++K LA+V+V KPI+D L++S
Sbjct: 269 KPGVSNLLTIYSILGNTTIEELEAKYEGKGYGEFKGDLAEVVVNALKPIQDRYYELIES- 327
Query: 331 EHLEKVLLDGSIRAQAIAVETWDEVKSA 358
E L+++L +G+ RA A + ++++A
Sbjct: 328 EELDRILDEGAERANRTANKMLKKMENA 355
>pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1M83|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In A Closed, Pre-Transition State
Conformation
pdb|1MAU|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp And Tryptophanamide In A
Pre-Transition State Conformation
pdb|1MAW|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MB2|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|2OV4|A Chain A, Crystal Structure Of B. Stearothermophilus Tryptophanyl
Trna Synthetase In Complex With Adenosine Tetraphosphate
Length = 328
Score = 237 bits (604), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 124/322 (38%), Positives = 197/322 (61%), Gaps = 5/322 (1%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
IFSGIQP+G + +GNY GA++ + LQ++ + FCIVD H+IT+ Q +L++NI+ +A
Sbjct: 4 IFSGIQPSGVITIGNYIGALRQFVELQHE-YNCYFCIVDQHAITVWQDPHELRQNIRRLA 62
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGL 157
A LA GIDP ++ LF QS+VP H Q AW+L C+ + L M + EK A + GL
Sbjct: 63 ALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGKEAVSAGL 122
Query: 158 FLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQL-LPQDESA 216
YP L AADILLY +P G DQ +I L L + FN ++ ++F IP+ +P+
Sbjct: 123 LTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPK--VG 180
Query: 217 GKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSN 276
++ SL DP+KKMSKSD + + I + D + I +K K A+TD + YD E +P +SN
Sbjct: 181 ARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGTIRYDKEAKPGISN 240
Query: 277 LITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKV 336
L+ +++ + Q +++ Q + G +K LA V++E +PI++ + M+S+E L++V
Sbjct: 241 LLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWMESEE-LDRV 299
Query: 337 LLDGSIRAQAIAVETWDEVKSA 358
L +G+ +A +A E +++ A
Sbjct: 300 LDEGAEKANRVASEMVRKMEQA 321
>pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|B Chain B, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|C Chain C, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|D Chain D, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|E Chain E, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|F Chain F, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site
Length = 326
Score = 231 bits (590), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 124/322 (38%), Positives = 197/322 (61%), Gaps = 5/322 (1%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
IFSGIQP+G + +GNY GA++ + LQ++ + FCIVD H+IT+ Q +L++NI+ +A
Sbjct: 4 IFSGIQPSGVITIGNYIGALRQFVELQHE-YNCYFCIVDQHAITVWQDPHELRQNIRRLA 62
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGL 157
A LA GIDP ++ LF QS+VP H Q AW+L C+ + L M + EK A + GL
Sbjct: 63 ALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGAAAAAAGL 122
Query: 158 FLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQL-LPQDESA 216
YP L AADILLY +P G DQ +I L L + FN ++ ++F IP+ +P+
Sbjct: 123 LTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPK--VG 180
Query: 217 GKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSN 276
++ SL DP+KKMSKSD + + I + D + I +K K A+TD + YD E +P +SN
Sbjct: 181 ARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGTIRYDKEAKPGISN 240
Query: 277 LITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKV 336
L+ +++ + Q +++ Q + G +K LA V++E +PI++ + M+S+E L++V
Sbjct: 241 LLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWMESEE-LDRV 299
Query: 337 LLDGSIRAQAIAVETWDEVKSA 358
L +G+ +A +A E +++ A
Sbjct: 300 LDEGAEKANRVASEMVRKMEQA 321
>pdb|1I6K|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1I6L|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
Length = 328
Score = 228 bits (581), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 120/314 (38%), Positives = 189/314 (60%), Gaps = 5/314 (1%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
IFSGIQP+G + +GNY GA++ + LQ++ + FCIVD H+IT+ Q +L++NI+ +A
Sbjct: 4 IFSGIQPSGVITIGNYIGALRQFVELQHE-YNCYFCIVDQHAITVWQDPHELRQNIRRLA 62
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGL 157
A LA GIDP ++ LF QS+VP H Q AW L C+ + L + EK A + GL
Sbjct: 63 ALYLAVGIDPTQATLFIQSEVPAHAQAAWXLQCIVYIGELERXTQFKEKSAGKEAVSAGL 122
Query: 158 FLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQL-LPQDESA 216
YP L AADILLY +P G DQ +I L L + FN ++ ++F IP+ +P+
Sbjct: 123 LTYPPLXAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPK--VG 180
Query: 217 GKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSN 276
++ SL DP+KK SKSD + + I + D + I +K K A+TD + YD E +P +SN
Sbjct: 181 ARIXSLVDPTKKXSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGTIRYDKEAKPGISN 240
Query: 277 LITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKV 336
L+ +++ + Q +++ Q + G +K LA V++E +PI++ + +S+E L++V
Sbjct: 241 LLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWXESEE-LDRV 299
Query: 337 LLDGSIRAQAIAVE 350
L +G+ +A +A E
Sbjct: 300 LDEGAEKANRVASE 313
>pdb|3FI0|A Chain A, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|B Chain B, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|C Chain C, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|D Chain D, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|E Chain E, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|F Chain F, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|G Chain G, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|H Chain H, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|I Chain I, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|J Chain J, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|K Chain K, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|L Chain L, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|M Chain M, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|N Chain N, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|O Chain O, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|P Chain P, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|Q Chain Q, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|R Chain R, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
Length = 326
Score = 228 bits (581), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 120/314 (38%), Positives = 189/314 (60%), Gaps = 5/314 (1%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
IFSGIQP+G + +GNY GA++ + LQ++ + FCIVD H+IT+ Q +L++NI+ +A
Sbjct: 4 IFSGIQPSGVITIGNYIGALRQFVELQHE-YNCYFCIVDQHAITVWQDPHELRQNIRRLA 62
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGL 157
A LA GIDP ++ LF QS+VP H Q AW L C+ + L + EK A + GL
Sbjct: 63 ALYLAVGIDPTQATLFIQSEVPAHAQAAWXLQCIVYIGELERXTQFKEKSAGKEAVSAGL 122
Query: 158 FLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQL-LPQDESA 216
YP L AADILLY +P G DQ +I L L + FN ++ ++F IP+ +P+
Sbjct: 123 LTYPPLXAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPK--VG 180
Query: 217 GKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSN 276
++ SL DP+KK SKSD + + I + D + I +K K A+TD + YD E +P +SN
Sbjct: 181 ARIXSLVDPTKKXSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGTIRYDKEAKPGISN 240
Query: 277 LITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKV 336
L+ +++ + Q +++ Q + G +K LA V++E +PI++ + +S+E L++V
Sbjct: 241 LLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWXESEE-LDRV 299
Query: 337 LLDGSIRAQAIAVE 350
L +G+ +A +A E
Sbjct: 300 LDEGAEKANRVASE 313
>pdb|3N9I|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Yersinia Pestis Co92
pdb|3N9I|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Yersinia Pestis Co92
Length = 346
Score = 224 bits (571), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 190/325 (58%), Gaps = 7/325 (2%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
+FSG QP+G L +GNY GA++ W +Q+ D I+CIVDLH+IT +Q L++
Sbjct: 18 VFSGAQPSGELTIGNYMGALRQWVQMQDD-YDCIYCIVDLHAITARQDPALLRKRTLDTL 76
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQS-PTG 156
A LACGIDP+KS +F QS VPEH+QL+W L C L+ M + +K A ++ G
Sbjct: 77 ALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMTQFKDKSARYAENINAG 136
Query: 157 LFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQ-LLPQDES 215
LF YPVL AADILLY+ +P G DQ ++ L+ + FNN + IF IP+ +P+ +
Sbjct: 137 LFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNLYGDIFKIPEPFIPK--A 194
Query: 216 AGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCT--SAVTYDPENRPA 273
+V SL+DP+KKMSKSD + N+ IE+ + P+ +V+K K+A+TD + + YD E +
Sbjct: 195 GARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRAMTDSDEPALIRYDVEKKAG 254
Query: 274 VSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHL 333
VSNL+ + + T Q ++ Q G K +AD + +++ + + L
Sbjct: 255 VSNLLDILSGVTGQSIPELEAQFTGQMYGHLKGAVADAVSGMLSELQERYRTYREDEALL 314
Query: 334 EKVLLDGSIRAQAIAVETWDEVKSA 358
+ V+ +G+ +A+A A T +V A
Sbjct: 315 QDVMREGAAKARARAQVTLAKVYEA 339
>pdb|3SZ3|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Vibrio Cholerae With An Endogenous Tryptophan
Length = 341
Score = 221 bits (562), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 127/332 (38%), Positives = 193/332 (58%), Gaps = 12/332 (3%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
+ SG+QP+G L +GNY GA++ W +Q+ D +C+VDLH+IT++Q + L E
Sbjct: 9 VLSGVQPSGELSIGNYLGALRQWQQMQDD-YDCQYCVVDLHAITVRQDPQALHEATLDAL 67
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQS-PTG 156
A LA G+DP+KS LF QS VPEH QL WVL C + L+ M + +K A G
Sbjct: 68 AICLAVGVDPKKSTLFVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYANDVNAG 127
Query: 157 LFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFD---KIFPIPQ-LLPQ 212
LF YPVL AADILLY A +P G DQ ++ LA + FNN + IF IP+ +P
Sbjct: 128 LFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPT 187
Query: 213 DESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSA--VTYDPEN 270
+ +V SL+D +KKMSKSD + + I + + P+ I++K KA TD + + YD EN
Sbjct: 188 VNA--RVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINKAQTDAETPPRIAYDVEN 245
Query: 271 RPAVSNLITLHALCTNQLPQDICTQVKHLNT-GQYKLLLADVLVEKFKPIRDEIEYLMKS 329
+ ++NL+ L++ T + +I Q + G +K + + +V +P++ E + +
Sbjct: 246 KAGIANLMGLYSAATGKTFAEIEAQYAGVEMYGPFKKDVGEAVVAMLEPVQAEYQRIRND 305
Query: 330 KEHLEKVLLDGSIRAQAIAVETWDEVKSAAVG 361
+E+L V+ DG+ +A A A++T +V AAVG
Sbjct: 306 REYLNSVMRDGAEKASAKALQTLKKV-YAAVG 336
>pdb|2EL7|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Thermus Thermophilus
pdb|2EL7|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Thermus Thermophilus
Length = 337
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 123/328 (37%), Positives = 183/328 (55%), Gaps = 12/328 (3%)
Query: 36 QRIFSGIQPTGTLHLGNYFGAVQTWSALQNK-GEDVIFCIVDLHSITIKQKHKDLKENIQ 94
+R+ SGIQP+G +H+GNY GA++ W A+ K G D FCIVD H++T + +
Sbjct: 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQR 61
Query: 95 LMAASL--LACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQ 152
A+L +A G+DP+K LF QS VPEHT+L+WV T L + L M + +K ++ +
Sbjct: 62 TFEAALVNIAAGLDPEKVTLFVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASKQET 121
Query: 153 SPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQ 212
+GL +YPVLQAADIL+YKA +P G DQ+ +I L + + FN+ F + FP PQ L
Sbjct: 122 VWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEPQALLN 181
Query: 213 DESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRP 272
E A +V + D KMSKS + I + +P E I +K + D DP + P
Sbjct: 182 PE-APRVPGI-DGKAKMSKS---LGNTIGLLEPEESIWQKIQHLPDDPQRIRLSDPGD-P 235
Query: 273 AVSNLIT-LHALCTNQLPQDICTQVKHLNTGQY--KLLLADVLVEKFKPIRDEIEYLMKS 329
+ L T L L + + + + G Y K +L D L+E +PIR+ E L K
Sbjct: 236 ERTILFTYLSYFAPKDLVEALKEEYRKAGVGTYVVKRILFDHLMEALRPIRERAEALKKD 295
Query: 330 KEHLEKVLLDGSIRAQAIAVETWDEVKS 357
+++ LL+G+ RA+A+A T +EV+
Sbjct: 296 PDYVMDALLEGAKRARAVAQATMEEVRE 323
>pdb|3FHJ|F Chain F, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 297
Score = 198 bits (504), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 116/321 (36%), Positives = 183/321 (57%), Gaps = 33/321 (10%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
IFSGIQP+G + +GNY GA++ + LQ++ + FCIVD H+IT+ Q +L++NI+ +A
Sbjct: 4 IFSGIQPSGVITIGNYIGALRQFVELQHE-YNCYFCIVDQHAITVWQDPHELRQNIRRLA 62
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGL 157
A LA GIDP ++ LF QS+VP H Q AW+L C+ + L M + GL
Sbjct: 63 ALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMVS------------AGL 110
Query: 158 FLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAG 217
YP L AADILLY +P G DQ +I L L + FN ++ F IP+ A
Sbjct: 111 LTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY---FTIPE-------AR 160
Query: 218 KVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSNL 277
++ SL DP+KKMSKSD + + I + D + I +K K + + Y P +SNL
Sbjct: 161 RIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSS----EGTIRY-----PGISNL 211
Query: 278 ITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVL 337
+ +++ + Q +++ Q + G +K LA V++E +PI++ + M+S+E L++VL
Sbjct: 212 LNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWMESEE-LDRVL 270
Query: 338 LDGSIRAQAIAVETWDEVKSA 358
+G+ +A +A E +++ A
Sbjct: 271 DEGAEKANRVASEMVRKMEQA 291
>pdb|3U1V|A Chain A, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
Northeast Structural Genomics Consortium Target Or52
pdb|3U1V|B Chain B, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
Northeast Structural Genomics Consortium Target Or52
pdb|3U1V|C Chain C, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
Northeast Structural Genomics Consortium Target Or52
pdb|3U1V|D Chain D, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
Northeast Structural Genomics Consortium Target Or52
Length = 338
Score = 189 bits (480), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 105/314 (33%), Positives = 175/314 (55%), Gaps = 5/314 (1%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
IFS I PTG + +G Y GA++ + LQ++ + FCI D +IT+ Q +L++NI+ +A
Sbjct: 4 IFSAICPTGVITIGRYIGALRQFVELQHE-YNCYFCIADQSAITVWQDPHELRQNIRRLA 62
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGL 157
A LA GIDP ++ LF S+VP H Q AW L C+ + L + E A + GL
Sbjct: 63 ALYLAVGIDPTQATLFIASEVPAHAQAAWXLQCIVYIGELERXTLFKELSAGKEAVSAGL 122
Query: 158 FLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQL-LPQDESA 216
+P + AA ILLY +P G L L + FN ++ ++F IP+ +P+
Sbjct: 123 LTHPPIYAAXILLYNTDIVPVGEYGKQLYELTRDLAERFNKRYGELFTIPEARIPK--VG 180
Query: 217 GKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSN 276
++ SL DP+K +SD + + I + D + I +K K A+TD + YD E +P +SN
Sbjct: 181 ARIXSLVDPTKSXYQSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGTIRYDKEAKPGISN 240
Query: 277 LITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKV 336
L+ +++ + Q +++ Q + G +K LA V++E +PI++ + +S+E L++V
Sbjct: 241 LLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWXESEE-LDRV 299
Query: 337 LLDGSIRAQAIAVE 350
L +G+ +A +A E
Sbjct: 300 LDEGAEKANRVASE 313
>pdb|3FHJ|A Chain A, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 300
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 181/322 (56%), Gaps = 32/322 (9%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
IFSGIQ +GNY GA++ + LQ++ + FCIVD H+IT+ Q +L++NI+ +A
Sbjct: 4 IFSGIQT-----IGNYIGALRQFVELQHE-YNCYFCIVDQHAITVWQDPHELRQNIRRLA 57
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGL 157
A LA GIDP ++ LF QS+VP H Q AW+L C+ + L M Q GL
Sbjct: 58 ALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERM----------TQVSAGL 107
Query: 158 FLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQL-LPQDESA 216
YP L AADILLY +P G DQ +I L L + FN ++ F IP+ +P+
Sbjct: 108 LTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY---FTIPEARIPK--VG 162
Query: 217 GKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSN 276
++ SL DP+KKMSKSD + + I + D + I +K K + + Y P +SN
Sbjct: 163 ARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSS----EGTIRY-----PGISN 213
Query: 277 LITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKV 336
L+ +++ + Q +++ Q + G +K LA V++E +PI++ + M+S+E L++V
Sbjct: 214 LLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWMESEE-LDRV 272
Query: 337 LLDGSIRAQAIAVETWDEVKSA 358
L +G+ +A +A E +++ A
Sbjct: 273 LDEGAEKANRVASEMVRKMEQA 294
>pdb|3FHJ|B Chain B, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 292
Score = 185 bits (470), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 114/321 (35%), Positives = 178/321 (55%), Gaps = 38/321 (11%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
IFSGIQ +GNY GA++ + LQ++ + FCIVD H+IT+ Q +L++NI+ +A
Sbjct: 4 IFSGIQT-----IGNYIGALRQFVELQHE-YNCYFCIVDQHAITVWQDPHELRQNIRRLA 57
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGL 157
A LA GIDP ++ LF QS+VP H Q AW+L C+ + L M Q GL
Sbjct: 58 ALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERM----------TQVSAGL 107
Query: 158 FLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAG 217
YP L AADILLY +P G DQ +I L L + FN ++ F IP+
Sbjct: 108 LTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY---FTIPE--------- 155
Query: 218 KVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSNL 277
++ SL DP+KKMSKSD + + I + D + I +K K + + Y P +SNL
Sbjct: 156 RIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSS----EGTIRY-----PGISNL 206
Query: 278 ITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVL 337
+ +++ + Q +++ Q + G +K LA V++E +PI++ + M+S+E L++VL
Sbjct: 207 LNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWMESEE-LDRVL 265
Query: 338 LDGSIRAQAIAVETWDEVKSA 358
+G+ +A +A E +++ A
Sbjct: 266 DEGAEKANRVASEMVRKMEQA 286
>pdb|3FHJ|E Chain E, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 293
Score = 184 bits (467), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 114/322 (35%), Positives = 178/322 (55%), Gaps = 39/322 (12%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
IFSGIQ +GNY GA++ + LQ++ + FCIVD H+IT+ Q +L++NI+ +A
Sbjct: 4 IFSGIQT-----IGNYIGALRQFVELQHE-YNCYFCIVDQHAITVWQDPHELRQNIRRLA 57
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGL 157
A LA GIDP ++ LF QS+VP H Q AW+L C+ + L M Q GL
Sbjct: 58 ALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERM----------TQVSAGL 107
Query: 158 FLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQL-LPQDESA 216
YP L AADILLY +P G DQ +I L L + FN ++ F IP+ +P+
Sbjct: 108 LTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY---FTIPEARIPK--VG 162
Query: 217 GKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSN 276
++ SL DP+KKMSKSD + + I + D + I +K K P +SN
Sbjct: 163 ARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS----------------PGISN 206
Query: 277 LITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKV 336
L+ +++ + Q +++ Q + G +K LA V++E +PI++ + M+S+E L++V
Sbjct: 207 LLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWMESEE-LDRV 265
Query: 337 LLDGSIRAQAIAVETWDEVKSA 358
L +G+ +A +A E +++ A
Sbjct: 266 LDEGAEKANRVASEMVRKMEQA 287
>pdb|3FHJ|D Chain D, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 287
Score = 181 bits (458), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 114/322 (35%), Positives = 177/322 (54%), Gaps = 45/322 (13%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
IFSGIQP+G + +GNY GA++ + LQ++ + FCIVD H+IT+ Q +L++NI+ +A
Sbjct: 4 IFSGIQPSGVITIGNYIGALRQFVELQHE-YNCYFCIVDQHAITVWQDPHELRQNIRRLA 62
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGL 157
A LA GIDP ++ LF QS+VP H Q AW+L C+ + L M Q GL
Sbjct: 63 ALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERM----------TQVSAGL 112
Query: 158 FLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQL-LPQDESA 216
YP L AADILLY +P G DQ +I L L + F F IP+ +P+
Sbjct: 113 LTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERF-------FTIPEARIPK--VG 163
Query: 217 GKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSN 276
++ SL DP+KKMSKSD + + I + D + I +K K A+SN
Sbjct: 164 ARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS-----------------AISN 206
Query: 277 LITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKV 336
L+ +++ + Q +++ Q +K LA V++E +PI++ + M+S+E L++V
Sbjct: 207 LLNIYSTLSGQSIEELERQYV------FKADLAQVVIETLRPIQERYHHWMESEE-LDRV 259
Query: 337 LLDGSIRAQAIAVETWDEVKSA 358
L +G+ +A +A E +++ A
Sbjct: 260 LDEGAEKANRVASEMVRKMEQA 281
>pdb|3FHJ|C Chain C, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 280
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 113/322 (35%), Positives = 173/322 (53%), Gaps = 52/322 (16%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
IFSGIQ +GNY GA++ + LQ++ + FCIVD H+IT+ Q +L++NI+ +A
Sbjct: 4 IFSGIQT-----IGNYIGALRQFVELQHE-YNCYFCIVDQHAITVWQDPHELRQNIRRLA 57
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGL 157
A LA GIDP ++ LF QS+VP H Q AW+L C+ + L M Q GL
Sbjct: 58 ALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERM----------TQVSAGL 107
Query: 158 FLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQL-LPQDESA 216
YP L AADILLY +P G DQ +I L L + FN ++ F IP+ +P+
Sbjct: 108 LTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY---FTIPEARIPK--VG 162
Query: 217 GKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSN 276
++ SL DP+KKMSKSD + + I + D + I +K K + E P +SN
Sbjct: 163 ARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSS------------EGTPGISN 210
Query: 277 LITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKV 336
L+ +++ G +K LA V++E +PI++ + M+S+E L++V
Sbjct: 211 LLNIYS-----------------TLGVFKADLAQVVIETLRPIQERYHHWMESEE-LDRV 252
Query: 337 LLDGSIRAQAIAVETWDEVKSA 358
L +G+ +A +A E +++ A
Sbjct: 253 LDEGAEKANRVASEMVRKMEQA 274
>pdb|2YY5|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
Length = 348
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 116/336 (34%), Positives = 178/336 (52%), Gaps = 26/336 (7%)
Query: 36 QRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQL 95
+R +GIQ +G HLGNY G +Q+ LQ + + +F + DLHSIT+ + + LK+N
Sbjct: 5 KRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVF-VADLHSITVDFQPQALKQNNFD 63
Query: 96 MAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQS-- 153
+ +LLA G+DPQK+ LF QS + EH+ + +++ + L M + K AE ++
Sbjct: 64 LVRTLLAVGLDPQKACLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPN 123
Query: 154 -----PTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQ 208
PTGL YP L A DILLY+ +P G DQ ++ L L Q KF +PQ
Sbjct: 124 GTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQ 183
Query: 209 LLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDP 268
+ Q++ ++ L DP+KKMSKS + N I + DP EV+V+K ++A TD + + +
Sbjct: 184 FV-QNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQATTDSFNKIRFAS 242
Query: 269 ENRPAVSNLIT-LHAL--------CTNQLPQDICTQVKHLNTGQY---KLLLADVLVEKF 316
+ +P V+N++T L AL TNQL D+ + +T Y K L + V
Sbjct: 243 KTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEA---YFSTKSYLDLKNALTEATVNLL 299
Query: 317 KPIRDEIEYLMKSKEHLEKVLLDGSIRAQAIAVETW 352
I+ + E + S+E + L G +AQA A T
Sbjct: 300 VNIQRKREQI--SREQVFNCLQAGKNQAQATARTTL 333
>pdb|2G36|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase (Ec
6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (Tm0492) From
Thermotoga Maritima At 2.50 A Resolution
Length = 340
Score = 172 bits (435), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 180/336 (53%), Gaps = 28/336 (8%)
Query: 37 RIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKD----LKEN 92
RI SG++PTG LH+G+ GA++ W LQ +G + + + D H++T H D LKE
Sbjct: 14 RILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTT---HYDDVSKLKEY 70
Query: 93 IQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQ 152
+ + LACGIDP+KS++F QS V EH +LA + + + +V+RL +PTY E +EL
Sbjct: 71 TRDLVRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNY 130
Query: 153 ---SPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQL 209
S G +YPVLQAADIL+YKA +P G DQ+++I L + + FN +D++FP P+
Sbjct: 131 KDLSTAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEPEA 190
Query: 210 LPQDESAGKVKSLKDP-SKKMSKSDLD-SNSKIEITDPPEVIVRKCKKALTDCTSAVTYD 267
+ +V L +KMSKS + N +I + + I+R +TD D
Sbjct: 191 I-----LSRVPKLPGTDGRKMSKSYGNIINLEISEKELEQTILR----MMTDPARVRRSD 241
Query: 268 PENRPAVSNLITLHALC-----TNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDE 322
P N P + H ++ + CT KLLL + + K PI +
Sbjct: 242 PGN-PENCPVWKYHQAFDISEEESKWVWEGCTTASIGCVDCKKLLLKN-MKRKLAPIWEN 299
Query: 323 IEYLMKSKEHLEKVLLDGSIRAQAIAVETWDEVKSA 358
+ + +++ V+++G+ +A+ +A +T +EV+ A
Sbjct: 300 FRKIDEDPHYVDDVIMEGTKKAREVAAKTMEEVRRA 335
>pdb|3M5W|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni
pdb|3M5W|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni
pdb|3TZL|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni Complexed With Adp And Tryptophane
pdb|3TZL|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni Complexed With Adp And Tryptophane
Length = 322
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/318 (31%), Positives = 170/318 (53%), Gaps = 15/318 (4%)
Query: 37 RIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLM 96
R+ +G+QP+G LH+GNYFGA++ Q K + F I + H+ T Q + LK+N
Sbjct: 5 RVLTGLQPSGDLHIGNYFGAIKQXVDAQEKSQXFXF-IANYHAXTSSQDGEKLKQNSLKA 63
Query: 97 AASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTG 156
AA+ L+ GIDPQKS+ + QS V E +L W+L+ L +Y +K A+ + G
Sbjct: 64 AAAFLSLGIDPQKSVFWLQSDVKEVXELYWILSQFTPXGLLERAHSYKDKVAKGLSASHG 123
Query: 157 LFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESA 216
LF YPVL AADILL+ +P G DQI ++ +A + NN++ +IF +P+ +E A
Sbjct: 124 LFSYPVLXAADILLFDTRIVPVGKDQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVA 183
Query: 217 GKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSN 276
V + K SKS + I+I + + ++ +TD T+ DP++ N
Sbjct: 184 VVVGT---DGAKXSKS---YQNTIDIFSSEKTLKKQISSIVTDSTA--LEDPKDHENC-N 234
Query: 277 LITLHALCTNQLPQDICTQVKHLNTGQ----YKLLLADVLVEKFKPIRDEIEYLMKSKEH 332
+ + L ++ Q Q+++ G+ +K+ L +++ FK R++ L++ H
Sbjct: 235 IFKIAKLFLDESGQKEL-QIRYEKGGEGYGHFKIYLNELVNAYFKEAREKYNELLEKPSH 293
Query: 333 LEKVLLDGSIRAQAIAVE 350
L+++L G+ +A+ IA E
Sbjct: 294 LKEILDFGATKARKIAQE 311
>pdb|2A4M|A Chain A, Structure Of Trprs Ii Bound To Atp
pdb|2A4M|B Chain B, Structure Of Trprs Ii Bound To Atp
pdb|2A4M|C Chain C, Structure Of Trprs Ii Bound To Atp
Length = 331
Score = 124 bits (312), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 96/331 (29%), Positives = 154/331 (46%), Gaps = 18/331 (5%)
Query: 37 RIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIK-QKHKDLKENIQL 95
R+ +G +PTG LHLG+ G++Q LQ++ E + + D+ ++T + + ++EN+
Sbjct: 4 RVLTGDRPTGALHLGHLAGSLQNRVRLQDEAE-LFVLLADVQALTDHFDRPEQVRENVLA 62
Query: 96 MAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAEL---KQ 152
+A LA G+DPQK+ QS VPE +L L TV+ L PT + A+ ++
Sbjct: 63 VALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGER 122
Query: 153 SPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQ 212
P G F+YPV QAADI + AT +P G DQ+ + + + FN + + PQ Q
Sbjct: 123 VPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQA--Q 180
Query: 213 DESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDP---E 269
++ L D KMSKS + I + D + + RK TD DP E
Sbjct: 181 LSRVPRLPGL-DGQAKMSKS---LGNAIALGDSADEVARKVMGMYTDPGHLRASDPGRVE 236
Query: 270 NRPAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLL--LADVLVEKFKPIRDEIEYLM 327
P + L Q + Q + G K+ L DVL PIR
Sbjct: 237 GNPVFTFLDAFDPDPARV--QALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRAEYE 294
Query: 328 KSKEHLEKVLLDGSIRAQAIAVETWDEVKSA 358
+ + + + + +G+ R + +A +T +V+ A
Sbjct: 295 RDPDAVLRFVTEGTARGREVAAQTLGQVRRA 325
>pdb|1YI8|B Chain B, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YI8|A Chain A, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YI8|C Chain C, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YIA|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YIA|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YIA|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YID|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp.
pdb|1YID|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp.
pdb|1YID|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp
Length = 351
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 153/330 (46%), Gaps = 18/330 (5%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIK-QKHKDLKENIQLM 96
+ +G +PTG LHLG+ G++Q LQ++ E + + D+ ++T + + ++EN+ +
Sbjct: 25 VLTGDRPTGALHLGHLAGSLQNRVRLQDEAE-LFVLLADVQALTDHFDRPEQVRENVLAV 83
Query: 97 AASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAEL---KQS 153
A LA G+DPQK+ QS VPE +L L TV+ L PT + A+ ++
Sbjct: 84 ALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERV 143
Query: 154 PTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQD 213
P G F+YPV QAADI + AT +P G DQ+ + + + FN + + PQ Q
Sbjct: 144 PAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQA--QL 201
Query: 214 ESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDP---EN 270
++ L D KMSKS + I + D + + RK TD DP E
Sbjct: 202 SRVPRLPGL-DGQAKMSKS---LGNAIALGDSADEVARKVMGMYTDPGHLRASDPGRVEG 257
Query: 271 RPAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLL--LADVLVEKFKPIRDEIEYLMK 328
P + L Q + Q + G K+ L DVL PIR +
Sbjct: 258 NPVFTFLDAFDPDPARV--QALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRAEYER 315
Query: 329 SKEHLEKVLLDGSIRAQAIAVETWDEVKSA 358
+ + + + +G+ R + +A +T +V+ A
Sbjct: 316 DPDAVLRFVTEGTARGREVAAQTLGQVRRA 345
>pdb|3P0J|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|C Chain C, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|D Chain D, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
Length = 690
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 105/246 (42%), Gaps = 31/246 (12%)
Query: 37 RIFSGIQPTGTLHLG-NYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQL 95
R + G +P+G +H+ F AV + G + +F + D ++ + +L E I++
Sbjct: 42 RCYDGFEPSGRMHIAQGIFKAVNV-NKCTAAGCEFVFWVADWFALMNDKVGGEL-EKIRI 99
Query: 96 MAASLL----ACGIDPQKSI-LFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAEL 150
+ L+ A G+D K + L+ ++ H W + + + R N + ++KC +
Sbjct: 100 VGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRM--VLDIGRQNTI-ARIKKCCTI 156
Query: 151 KQSPTGLF-----LYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFP 205
G LYP++Q DI KA GLDQ LA L K
Sbjct: 157 MGKTEGTLTAAQVLYPLMQCCDIFFLKADICQLGLDQRKVNMLAREYCDLIGRKLK---- 212
Query: 206 IPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKA----LTDCT 261
P +L AG LK KMSKSD D S I + D E + RK ++A +
Sbjct: 213 -PVILSHHMLAG----LKQGQAKMSKSDPD--SAIFMEDTEEDVARKIRQAYCPRVKQSA 265
Query: 262 SAVTYD 267
SA+T D
Sbjct: 266 SAITDD 271
>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1
pdb|3A05|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Complex
With Tryptophan
Length = 372
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 124/279 (44%), Gaps = 41/279 (14%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQ--KHKDLKENIQL 95
+ +G P+G H G+ V LQ G V I D + +++ + + ++ ++
Sbjct: 73 VLTGFMPSGKFHFGHKL-TVDQLIYLQKNGFKVFVAIADAEAFAVRRIGREEAVRIAVEE 131
Query: 96 MAASLLACGIDPQKS-ILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSP 154
A+++A G+DP+ + FQ ++ + +L + + T + + EL +P
Sbjct: 132 YIANMIALGLDPKDTEFYFQTNRGTPYFRLIQLFSGKVTAAEMEAI------YGEL--TP 183
Query: 155 TGLFLYPVLQAADILL--------YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPI 206
+ + + QAADIL Y+ +P G DQ ++ L L D++ +
Sbjct: 184 AKM-MASLTQAADILHVQLDEYGGYRHVVVPVGADQDPHLRLTRDLA-------DRMAGV 235
Query: 207 PQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTY 266
+L + K++ D +KMS S DS I +TDPPEV K +ALT + T
Sbjct: 236 VELERPASTYHKLQPGLD-GRKMSSSRPDST--IFLTDPPEVARNKLFRALTGGRA--TA 290
Query: 267 DPENR----PAVSNLITLHALCTNQLPQDICTQVKHLNT 301
+ + R P V ++ H + +P D +VKH+ T
Sbjct: 291 EEQRRLGGVPEVCSV--YHMDLYHLMPDD--GEVKHIYT 325
>pdb|2CYB|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
pdb|2CYB|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
Length = 323
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 100/237 (42%), Gaps = 32/237 (13%)
Query: 37 RIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHS-ITIKQKHKDLKENIQL 95
R + G +P+G +HLG+ VQ LQ G ++I + D+H+ + K +++ E
Sbjct: 34 RAYVGYEPSGEIHLGHMM-TVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADY 92
Query: 96 MAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSP- 154
+A G+D ++ S+ + + + LN +++ + K+ P
Sbjct: 93 NKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRRKEDPM 152
Query: 155 TGLFLYPVLQAADILLYKATHIPAGLDQ--IHNINLANHLTQLFNNKFDKIFPI----PQ 208
+YP++QA DI G+DQ IH + N L +L + P+ P
Sbjct: 153 VSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLAREN-LPRLGYSS-----PVCLHTPI 206
Query: 209 LLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVT 265
L+ D +KMS S + I + DPPE + RK +KA C + V
Sbjct: 207 LVGLD------------GQKMSSS---KGNYISVRDPPEEVERKIRKAY--CPAGVV 246
>pdb|3P0H|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0H|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0I|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
pdb|3P0I|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
Length = 690
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 99/246 (40%), Gaps = 31/246 (12%)
Query: 37 RIFSGIQPTGTLHLG-NYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQL 95
R + G +P+G H+ F AV + G + +F + D ++ + +L E I++
Sbjct: 42 RCYDGFEPSGRXHIAQGIFKAVNV-NKCTAAGCEFVFWVADWFALXNDKVGGEL-EKIRI 99
Query: 96 MAASLL----ACGIDPQKSI-LFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAEL 150
+ L+ A G D K + L+ ++ H W + + R N + ++KC +
Sbjct: 100 VGRYLIEVWKAAGXDXDKVLFLWSSEEITSHADTYW--RXVLDIGRQNTI-ARIKKCCTI 156
Query: 151 KQSPTGLF-----LYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFP 205
G LYP+ Q DI KA GLDQ LA L K
Sbjct: 157 XGKTEGTLTAAQVLYPLXQCCDIFFLKADICQLGLDQRKVNXLAREYCDLIGRKLK---- 212
Query: 206 IPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKA----LTDCT 261
P +L AG LK K SKSD D S I D E + RK ++A +
Sbjct: 213 -PVILSHHXLAG----LKQGQAKXSKSDPD--SAIFXEDTEEDVARKIRQAYCPRVKQSA 265
Query: 262 SAVTYD 267
SA+T D
Sbjct: 266 SAITDD 271
>pdb|3JXE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
Tryptophanyl-Trna Synthetase In Complex With Trpamp
pdb|3JXE|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
Tryptophanyl-Trna Synthetase In Complex With Trpamp
Length = 392
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 102/265 (38%), Gaps = 43/265 (16%)
Query: 5 KAHLLLTHMKKFVNSSGQQ---IRHYSDHKISFPQRIFSGIQPTGTLHLGNYFGAVQTWS 61
K+ L + +KF S ++ Y + + F +++G P+G +H+G+ T
Sbjct: 43 KSELPIFFRRKFFFSHRDYDLILKDYEEGRGFF---LYTGRGPSGPMHIGHIIPFFATKW 99
Query: 62 ALQNKGEDVIFCIVDLHSITIKQK--HKDLKENIQLMAASLLACGIDPQKSILFQQSQVP 119
+ G ++ I D K+ D K ++A G DP K+ +FQ S+
Sbjct: 100 LQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFT 159
Query: 120 EHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGLFLYPVLQAADILL-YKATHIPA 178
+ ++A + + + + E QS G+ +P +Q A K IPA
Sbjct: 160 KIYEMAIPIAKKINFSMAKAVFGFTE------QSKIGMIFFPAIQIAPTFFERKRCLIPA 213
Query: 179 GLDQ--------IHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMS 230
+DQ +L + T ++KF V SL S KMS
Sbjct: 214 AIDQDPYWRLQRDFAESLGYYKTAALHSKF------------------VPSLTSLSGKMS 255
Query: 231 KSDLDSNSKIEITDPPEVIVRKCKK 255
S + I +TD PE + +K K
Sbjct: 256 AS--KPETAIYLTDSPEDVEKKVWK 278
>pdb|3VGJ|A Chain A, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
pdb|3VGJ|B Chain B, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
Length = 373
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 98/227 (43%), Gaps = 22/227 (9%)
Query: 39 FSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAA 98
+ G +P+G +H+ + L + G IF I D + + DLK+ I+ + +
Sbjct: 60 YDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKK-IKKVGS 118
Query: 99 SLL----ACGIDPQK-SILFQQSQVPEHTQLAWVLTCLCT----VNRLNHMPTYVEKCAE 149
+ +CG++ + L+ ++ + W L + +NR+ + + +E
Sbjct: 119 YFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGR-SE 177
Query: 150 LKQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQL 209
+++ LYP +Q ADI G+DQ N L + + + KI P +
Sbjct: 178 GEENYCSQILYPCMQCADIFFLNVDICQLGIDQ----RKVNMLAREYCDIK-KIKKKPVI 232
Query: 210 LPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKA 256
L S G + L + +KMSKS D NS I + D + RK KKA
Sbjct: 233 L----SHGMLPGLLEGQEKMSKS--DENSAIFMDDSESDVNRKIKKA 273
>pdb|1J1U|A Chain A, Crystal Structure Of Archaeal Tyrosyl-Trna Synthetase
Complexed With Trna(Tyr) And L-Tyrosine
pdb|1U7D|A Chain A, Crystal Structure Of Apo M. Jannashii Tyrosyl-Trna
Synthetase
pdb|1U7D|B Chain B, Crystal Structure Of Apo M. Jannashii Tyrosyl-Trna
Synthetase
Length = 306
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 91/245 (37%), Gaps = 58/245 (23%)
Query: 39 FSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSI-----------TIKQKHK 87
+ G +P+G +HLG+Y ++ LQN G D+I + DLH+ I +K
Sbjct: 32 YIGFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNK 90
Query: 88 DLKENIQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKC 147
+ E + L A + K ++ T L + + R + P K
Sbjct: 91 KVFEAMGLKAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIAREDENP----KV 146
Query: 148 AELKQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIP 207
AE+ +YP++Q DI G++Q LA
Sbjct: 147 AEV--------IYPIMQVNDIHYLGVDVAVGGMEQRKIHMLAR----------------- 181
Query: 208 QLLPQDESAGKVKSLKDP-------SKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDC 260
+LLP+ KV + +P KMS S + I + D PE I K KKA C
Sbjct: 182 ELLPK-----KVVCIHNPVLTGLDGEGKMSSS---KGNFIAVDDSPEEIRAKIKKAY--C 231
Query: 261 TSAVT 265
+ V
Sbjct: 232 PAGVV 236
>pdb|2CYC|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Pyrococcus Horikoshii
pdb|2CYC|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Pyrococcus Horikoshii
Length = 375
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 112/275 (40%), Gaps = 36/275 (13%)
Query: 22 QQIRHYSDHKISFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSIT 81
+ +RH + I P + + G + +G +HLG A + Q G + D HS
Sbjct: 22 ENLRHLFE--IGAPLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWI 79
Query: 82 IKQKHKDLK--ENIQL------MAASLLACGIDPQKSILFQQSQVPE---HTQLAWVLTC 130
+ DL+ + + L M S+ G DP+K S++ E + Q ++
Sbjct: 80 NDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDISK 139
Query: 131 LCTVNRLNHMPTYVEKCAELKQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLAN 190
T++R+ T + + + +YP++Q ADI T AG+DQ +A
Sbjct: 140 NVTLSRVMRSITIMGRQMG-EAIDFAKLIYPMMQVADIFYQGVTIAHAGMDQRKAHVIAI 198
Query: 191 HLTQLFN-----NKFDKIFPI------------PQLLPQDESAGKVKSLKDPSKKMSKSD 233
+ Q ++ +K+ P+ P P ES + K +K KMSKS
Sbjct: 199 EVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPI-ESEEEFKEIK-AQMKMSKS- 255
Query: 234 LDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDP 268
S + I D PE I +K +KA V Y+P
Sbjct: 256 -KPYSAVFIHDSPEEIRQKLRKAFCPARE-VRYNP 288
>pdb|2J5B|A Chain A, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
pdb|2J5B|B Chain B, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
Length = 348
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 97/248 (39%), Gaps = 34/248 (13%)
Query: 37 RIFS---GIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDL---K 90
RIF+ G +P+G +H+ V + + G +I I D + + + D+ +
Sbjct: 39 RIFTAYNGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIR 98
Query: 91 ENIQLMAASLLACGIDPQKSILFQQSQV----PEHTQLAWVLTCLCTVNRLNH----MPT 142
E + ACGI+ + S+ P + + + T++R+ M
Sbjct: 99 ELGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRCCQIMGR 158
Query: 143 YVEKCAELKQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKF-- 200
C + Q YP +QAAD+ +P G+D I + + + ++
Sbjct: 159 NESDCLKASQ-----IFYPCMQAADVF----ELVPEGID-ICQLGIDQRKVNMLAIEYAN 208
Query: 201 DKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDC 260
D+ IP L S + SL P KKMSKS D I + D + + K +A C
Sbjct: 209 DRGLKIPISL----SHHMLMSLSGPKKKMSKS--DPQGAIFMDDTEQEVSEKISRAY--C 260
Query: 261 TSAVTYDP 268
T +P
Sbjct: 261 TDETFDNP 268
>pdb|2AG6|A Chain A, Crystal Structure Of P-Bromo-L-Phenylalanine-Trna
Sythetase In Complex With P-Bromo-L-Phenylalanine
Length = 314
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 92/243 (37%), Gaps = 58/243 (23%)
Query: 41 GIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSI-----------TIKQKHKDL 89
G +P+G +HLG+Y ++ LQN G D+I + DLH+ I +K +
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNKKV 92
Query: 90 KENIQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAE 149
E + L A + K ++ T L + + R + P K AE
Sbjct: 93 FEAMGLKAKYVYGSSFQLDKDYTLNVYRLALKTTLKRARRSMELIAREDENP----KVAE 148
Query: 150 LKQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQL 209
+ +YP++Q + L Y+ + G + I++ +L
Sbjct: 149 V--------IYPIMQ-VNPLHYEGVDVAVGGMEQRKIHMLAR----------------EL 183
Query: 210 LPQDESAGKVKSLKDP-------SKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTS 262
LP+ KV + +P KMS S + I + D PE I K KKA C +
Sbjct: 184 LPK-----KVVCIHNPVLTGLDGEGKMSSS---KGNFIAVDDSPEEIRAKIKKAY--CPA 233
Query: 263 AVT 265
V
Sbjct: 234 GVV 236
>pdb|3QE4|A Chain A, An Evolved Aminoacyl-Trna Synthetase With Atypical
Polysubstrate Specificity
pdb|3QE4|B Chain B, An Evolved Aminoacyl-Trna Synthetase With Atypical
Polysubstrate Specificity
Length = 312
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 41 GIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHS 79
G +P+G +HLG+Y ++ LQN G D+I + DLH+
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIIVLADLHA 71
>pdb|2HGZ|A Chain A, Crystal Structure Of A P-Benzoyl-L-Phenylalanyl-Trna
Synthetase
Length = 306
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 41 GIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHS 79
G +P+G +HLG+Y ++ LQN G D+I + DLH+
Sbjct: 33 GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHA 70
>pdb|3N2Y|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With P-(2- Tetrazolyl)-Phenylalanine
pdb|3N2Y|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With P-(2- Tetrazolyl)-Phenylalanine
Length = 314
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 41 GIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHS 79
G +P+G +HLG+Y ++ LQN G D+I + DLH+
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIIILADLHA 71
>pdb|1ZH0|A Chain A, Crystal Structure Of L-3-(2-Napthyl)alanine-Trna
Synthetase In Complex With L-3-(2-Napthyl)alanine
Length = 314
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 41 GIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHS 79
G +P+G +HLG+Y ++ LQN G D+I + DLH+
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHA 71
>pdb|1U7X|A Chain A, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna
Synthetase Specific For O-Methyl-Tyrosine
pdb|1U7X|B Chain B, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna
Synthetase Specific For O-Methyl-Tyrosine
Length = 312
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 41 GIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHS 79
G +P+G +HLG+Y ++ LQN G D+I + DLH+
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHA 71
>pdb|1ZH6|A Chain A, Crystal Structure Of P-Acetylphenylalanine-Trna
Synthetase In Complex With P-Acetylphenylalanine
Length = 314
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 41 GIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHS 79
G +P+G +HLG+Y ++ LQN G D+I + DLH+
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHA 71
>pdb|2ZP1|A Chain A, Structual Basis Of Iodo-Tyrosine Recognition By
Engineered Archeal Tyrosyl-Trna Synthetase
Length = 314
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 39 FSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDL 77
+ G +P+G +HLG+Y ++ LQN G D+I + DL
Sbjct: 32 YIGFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADL 69
>pdb|3D6U|A Chain A, Crystal Structure Of 4-(Trifluoromethyldiazirinyl)
Phenylalanyl-Trna Synthetase
pdb|3D6V|A Chain A, Crystal Structure Of 4-(Trifluoromethyldiazirinyl)
Phenylalanyl-Trna Synthetase
Length = 314
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 91/243 (37%), Gaps = 58/243 (23%)
Query: 41 GIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSI-----------TIKQKHKDL 89
G +P+G +HLG+Y ++ LQN G D+I + DL + I +K +
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLFAYLNQKGELDEIRKIGDYNKKV 92
Query: 90 KENIQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAE 149
E + L A + K ++ T L + + R + P K AE
Sbjct: 93 FEAMGLKAKYVYGSSFMLDKDYTLNVYRLALKTTLKRARRSMELIAREDENP----KVAE 148
Query: 150 LKQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQL 209
+ +YP++Q + L Y+ + G + I++ +L
Sbjct: 149 V--------IYPIMQ-VNPLHYEGVDVAVGGMEQRKIHMLAR----------------EL 183
Query: 210 LPQDESAGKVKSLKDP-------SKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTS 262
LP+ KV + +P KMS S + I + D PE I K KKA C +
Sbjct: 184 LPK-----KVVCIHNPVLTGLDGEGKMSSS---KGNFIAVDDSPEEIRAKIKKAY--CPA 233
Query: 263 AVT 265
V
Sbjct: 234 GVV 236
>pdb|2PXH|A Chain A, Crystal Structure Of A Bipyridylalanyl-Trna Synthetase
Length = 314
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 41 GIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDL 77
G +P+G +HLG+Y ++ LQN G D+I + DL
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIIYLADL 69
>pdb|3HV0|A Chain A, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
pdb|3HV0|B Chain B, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
Length = 393
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 23/113 (20%)
Query: 79 SITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLN 138
++T+++ H EN++ ++ACG DP+ + +F T L ++ + R+
Sbjct: 125 NLTLEETHNYAYENMK----DIIACGFDPELTFIF--------TNLEYIAELYPDILRIE 172
Query: 139 HMPTYVEKCAELKQ-------SPTGLFLYPVLQAADILLYKATHIPAGLDQIH 184
+ C+++K G F +P +QAA HI G IH
Sbjct: 173 KKIS----CSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIH 221
>pdb|3FOC|A Chain A, Tryptophanyl-Trna Synthetase From Giardia Lamblia
pdb|3FOC|B Chain B, Tryptophanyl-Trna Synthetase From Giardia Lamblia
Length = 451
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 18/141 (12%)
Query: 5 KAHLLLTHMKKFVNSSGQQIRHYSDHKISFPQRIFSGIQPT-GTLHLGNYFGAVQTWSAL 63
KAH +L + + ++ Y ++ P I++G P+ G LHLG+ + T L
Sbjct: 63 KAHPMLRRGLFYAHRDFEEFLSY--YEKGHPIYIYTGRGPSSGALHLGHLLPFIFT-KYL 119
Query: 64 QNKGE-DVIFCIVD------LHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQQS 116
Q+ + V+ I D S++ + +ENI+ ++ACG DP K+ +F S
Sbjct: 120 QDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIK----DIIACGFDPDKTFIFINS 175
Query: 117 QVPEHTQLAWVLTCLCTVNRL 137
Q + L C V+R+
Sbjct: 176 Q---YLSLKNRYRFSCLVDRM 193
>pdb|2CYA|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase From
Aeropyrum Pernix
Length = 364
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 96/245 (39%), Gaps = 46/245 (18%)
Query: 39 FSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDL-------HSITIKQKHKDL-- 89
+ G +P+G H+G W K +D++ VD H+ + D+
Sbjct: 39 YIGYEPSGVAHIG--------WLVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDL 90
Query: 90 -KENIQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCL----CTVNRLNHMPTYV 144
+ +++ + A G+ P + + F ++ + W L ++ R+ T +
Sbjct: 91 IRAAARIVRRVMEAAGV-PVERVRFVDAEELASDKDYWGLVIRVAKRASLARVRRALTIM 149
Query: 145 EKCAELKQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIF 204
+ AE + +YP++Q +DI G+DQ A+ L + K +
Sbjct: 150 GRRAEEAEVDASKLIYPLMQVSDIFYMDLDIALGGMDQ----RKAHMLARDVAEKLGRKK 205
Query: 205 PIPQLLPQDESAGKVKSLKDPSK-KMSKSDLD--------SNSKIE----ITDPPEVIVR 251
P+ P + SL+ P + + S+ ++D S SK E + D + I R
Sbjct: 206 PVAIHTPI------ISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVVDSDDDIRR 259
Query: 252 KCKKA 256
K +KA
Sbjct: 260 KIRKA 264
>pdb|1H3F|A Chain A, Tyrosyl-Trna Synthetase From Thermus Thermophilus
Complexed With Tyrosinol
pdb|1H3F|B Chain B, Tyrosyl-Trna Synthetase From Thermus Thermophilus
Complexed With Tyrosinol
pdb|1H3E|A Chain A, Tyrosyl-Trna Synthetase From Thermus Thermophilus
Complexed With Wild-Type Trnatyr(Gua) And With Atp And
Tyrosinol
Length = 432
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 158 FLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAG 217
LYP QA D + +A G DQ N+ + + + + F +P L+ D G
Sbjct: 173 LLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLD---G 229
Query: 218 KVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKK 255
+ +KMSKS LD+ I +T+PPE + +K +
Sbjct: 230 R--------EKMSKS-LDNY--IGLTEPPEAMFKKLMR 256
>pdb|3AL0|C Chain C, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 592
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 37 RIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLM 96
R+ PTG LH+G A+ W + +G I I D + + +E Q +
Sbjct: 131 RVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDT------ERSSREYEQQI 184
Query: 97 AASLLACGID 106
SL CG+D
Sbjct: 185 LESLRWCGLD 194
>pdb|3AKZ|B Chain B, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|D Chain D, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|C Chain C, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|A Chain A, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
Length = 487
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 37 RIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLM 96
R+ PTG LH+G A+ W + +G I I D + + +E Q +
Sbjct: 26 RVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDT------ERSSREYEQQI 79
Query: 97 AASLLACGID 106
SL CG+D
Sbjct: 80 LESLRWCGLD 89
>pdb|3AFH|A Chain A, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With A Glutamyl-Amp
Analog
Length = 488
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 37 RIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLM 96
R+ PTG LH+G A+ W + +G I I D + + +E Q +
Sbjct: 27 RVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDT------ERSSREYEQQI 80
Query: 97 AASLLACGID 106
SL CG+D
Sbjct: 81 LESLRWCGLD 90
>pdb|1IRX|A Chain A, Crystal Structure Of Class I Lysyl-Trna Synthetase
pdb|1IRX|B Chain B, Crystal Structure Of Class I Lysyl-Trna Synthetase
Length = 523
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 40 SGIQPTGTLHLGNY---FGAVQTWSALQNKGEDV 70
SGI P+G +H+GN+ F A AL++KG +V
Sbjct: 26 SGITPSGYVHVGNFRELFTAYIVGHALRDKGYEV 59
>pdb|3E20|C Chain C, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|B Chain B, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|H Chain H, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|K Chain K, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
Length = 441
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 36 QRIFSGIQPTGTLHLGNY-FGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKD 88
QR F I +L G Y FG V T +ALQ + + C DL I + K+ +
Sbjct: 293 QRFFDEI----SLDSGKYCFGVVDTMNALQEGAVETLLCFADLDMIRYEFKNSE 342
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,822,978
Number of Sequences: 62578
Number of extensions: 531009
Number of successful extensions: 1264
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1167
Number of HSP's gapped (non-prelim): 52
length of query: 422
length of database: 14,973,337
effective HSP length: 101
effective length of query: 321
effective length of database: 8,652,959
effective search space: 2777599839
effective search space used: 2777599839
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)