BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3680
(422 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UGM6|SYWM_HUMAN Tryptophan--tRNA ligase, mitochondrial OS=Homo sapiens GN=WARS2
PE=1 SV=1
Length = 360
Score = 336 bits (861), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 167/322 (51%), Positives = 224/322 (69%), Gaps = 3/322 (0%)
Query: 36 QRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQL 95
+R+FSGIQPTG LHLGNY GA+++W LQ++ + V++ IVDLHSIT+ Q L+++I
Sbjct: 35 KRVFSGIQPTGILHLGNYLGAIESWVRLQDEYDSVLYSIVDLHSITVPQDPAVLRQSILD 94
Query: 96 MAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPT 155
M A LLACGI+P+KSILFQQSQV EHTQL+W+L+C+ + RL H+ + K + K T
Sbjct: 95 MTAVLLACGINPEKSILFQQSQVSEHTQLSWILSCMVRLPRLQHLHQWKAKTTKQKHDGT 154
Query: 156 -GLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDE 214
GL YPVLQAADILLYK+TH+P G DQ+ ++ L L Q FN K+ + FP+P+ +
Sbjct: 155 VGLLTYPVLQAADILLYKSTHVPVGEDQVQHMELVQDLAQGFNKKYGEFFPVPESILT-- 212
Query: 215 SAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAV 274
S KVKSL+DPS KMSKSD D + + ITD PE IV+K +KA+TD TS VTYDP R V
Sbjct: 213 SMKKVKSLRDPSAKMSKSDPDKLATVRITDSPEEIVQKFRKAVTDFTSEVTYDPAGRAGV 272
Query: 275 SNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLE 334
SN++ +HA T +++ + +NT +YKL +AD ++EKF PI+ EIE L K+HLE
Sbjct: 273 SNIVAVHAAVTGLSVEEVVRRSAGMNTARYKLAVADAVIEKFAPIKREIEKLKLDKDHLE 332
Query: 335 KVLLDGSIRAQAIAVETWDEVK 356
KVL GS +A+ +A EVK
Sbjct: 333 KVLQIGSAKAKELAYTVCQEVK 354
>sp|Q9CYK1|SYWM_MOUSE Tryptophan--tRNA ligase, mitochondrial OS=Mus musculus GN=Wars2
PE=2 SV=2
Length = 360
Score = 336 bits (861), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 167/322 (51%), Positives = 227/322 (70%), Gaps = 3/322 (0%)
Query: 36 QRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQL 95
+R+FSGIQPTG LHLGNY GA+++W LQ + + VI+ IVDLHSIT+ Q L+++I
Sbjct: 35 ERVFSGIQPTGILHLGNYLGAIESWVNLQEEYDTVIYSIVDLHSITVPQDPTVLQQSILD 94
Query: 96 MAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPT 155
M A LLACGI+P+KSILFQQS+V EHTQL+W+LTC+ + RL H+ + K A+ K T
Sbjct: 95 MTAVLLACGINPEKSILFQQSKVSEHTQLSWILTCMVRLPRLQHLHQWKAKAAKQKHDGT 154
Query: 156 -GLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDE 214
GL YPVLQAADIL YK+TH+P G DQ+ ++ L L + FN K+ + FP+P+ +
Sbjct: 155 VGLLTYPVLQAADILCYKSTHVPVGEDQVQHMELVQDLARSFNQKYGEFFPLPKSILT-- 212
Query: 215 SAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAV 274
S KVKSL+DPS KMSKSD D + + ITD PE IV+K +KA+TD TS VTY+P++R V
Sbjct: 213 SMKKVKSLRDPSSKMSKSDPDKLATVRITDSPEEIVQKFRKAVTDFTSEVTYEPDSRAGV 272
Query: 275 SNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLE 334
SN++ +HA + +++ L+T +YKLL+AD ++EKF PIR EIE L K+HL
Sbjct: 273 SNMVAIHAAVSGLSVEEVVRSSAGLDTARYKLLVADAVIEKFAPIRKEIEKLKMDKDHLR 332
Query: 335 KVLLDGSIRAQAIAVETWDEVK 356
KVLL GS +A+ +A ++EVK
Sbjct: 333 KVLLVGSAKAKELASPVFEEVK 354
>sp|Q3T099|SYWM_BOVIN Tryptophan--tRNA ligase, mitochondrial OS=Bos taurus GN=WARS2 PE=2
SV=1
Length = 360
Score = 335 bits (860), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 168/322 (52%), Positives = 228/322 (70%), Gaps = 3/322 (0%)
Query: 36 QRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQL 95
+RIFSGIQPTG HLGNY GA+++W LQ++ + V++ IVDLHSIT+ Q L+++I
Sbjct: 35 KRIFSGIQPTGIPHLGNYLGAIESWVRLQDEHDSVLYSIVDLHSITVPQDPTILRQSILD 94
Query: 96 MAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPT 155
M A+LLACGI+P+KSILFQQSQV EHTQL+W+LTC+ + RL H+ + K A+ K + T
Sbjct: 95 MTAALLACGINPEKSILFQQSQVSEHTQLSWILTCMVRLPRLQHLHQWKAKTAKEKHNGT 154
Query: 156 -GLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDE 214
GL YPVLQAADILLYK+TH+P G DQ+ ++ L L Q FN K+ + FP+P+ +
Sbjct: 155 VGLLTYPVLQAADILLYKSTHVPVGEDQVQHMELVQDLAQSFNKKYGEFFPVPKSILT-- 212
Query: 215 SAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAV 274
S KVKSL+DPS KMSKSD D + + ITD PE IV+K +KA+TD TS VTY+P +R V
Sbjct: 213 SMKKVKSLRDPSAKMSKSDPDKLATVRITDSPEEIVQKFRKAMTDFTSEVTYEPASRGGV 272
Query: 275 SNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLE 334
SNL+ +HA +++ + ++T +YKL++AD ++EKF PI+ EIE L +K+HLE
Sbjct: 273 SNLVAIHAAVAGLPVEEVVRRSAGMDTARYKLVVADAVIEKFAPIKSEIEKLKMNKDHLE 332
Query: 335 KVLLDGSIRAQAIAVETWDEVK 356
KVL GS RA+ +A EVK
Sbjct: 333 KVLQVGSARAKELAYPVCQEVK 354
>sp|Q8R9X8|SYW_THETN Tryptophan--tRNA ligase OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=trpS PE=3
SV=1
Length = 327
Score = 256 bits (654), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 200/322 (62%), Gaps = 4/322 (1%)
Query: 36 QRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQL 95
+R+FSG+QP+G +H+GNY GA++ + ALQ+ D FC+VDLH++T+ Q +LK+N
Sbjct: 2 KRVFSGVQPSGDIHIGNYLGAMRQFVALQDD-YDCFFCVVDLHALTVPQDPVELKKNTIE 60
Query: 96 MAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPT 155
+AA +A G+DP+K LF QS V H +LAW+L C+ L+ M + EK +
Sbjct: 61 LAALYMAIGLDPKKVTLFVQSHVSAHAELAWLLQCITYFGELSRMTQFKEKSKGKESVSV 120
Query: 156 GLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDES 215
GLF YP L AADILLYK ++P G DQ ++ L + Q FNN+F + F IP+ +
Sbjct: 121 GLFTYPDLMAADILLYKTHYVPVGEDQKQHLELTRDVAQRFNNRFGETFVIPEPMILKFG 180
Query: 216 AGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVS 275
A ++ SL +P+KKMSKSD D N+++ + D P+ I RK KA+TD S + D E +P +S
Sbjct: 181 A-RIMSLTNPTKKMSKSDADPNNRVNLLDDPDTIYRKIMKAVTDSESEIRLDWEKKPGIS 239
Query: 276 NLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEK 335
NL+T+++L T ++ + K G K LA+V+++K I+ Y S+E + +
Sbjct: 240 NLLTIYSLFTGMEVDEVVNKFKGQGYGTLKKELAEVVIDKLSVIQK--NYRDISEEEVLR 297
Query: 336 VLLDGSIRAQAIAVETWDEVKS 357
VL +G+ RA+A+AVET EVK
Sbjct: 298 VLKEGAERAEAVAVETLKEVKE 319
>sp|Q7NCG8|SYW_GLOVI Tryptophan--tRNA ligase OS=Gloeobacter violaceus (strain PCC 7421)
GN=trpS PE=3 SV=1
Length = 336
Score = 255 bits (651), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 129/334 (38%), Positives = 205/334 (61%), Gaps = 6/334 (1%)
Query: 35 PQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQ 94
P+RI SG QPTG LHLGNY GAV+ W + Q + D FC+VDLH++T+ Q+ +L+ +
Sbjct: 8 PKRILSGAQPTGQLHLGNYLGAVRNWVSEQRQ-YDSYFCVVDLHALTVPQEAAELRAATR 66
Query: 95 LMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAEL-KQS 153
AA LACGIDP++S +F QS V HT+L W+ CL +N L M + EK +L ++
Sbjct: 67 RTAALYLACGIDPERSTVFVQSHVSAHTELTWLFNCLTPINWLERMIQFKEKAIKLGEEV 126
Query: 154 PTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQD 213
GLF YPVLQAADILLY+ +P G DQ ++ L + + FN+++ + +P++L +
Sbjct: 127 GIGLFDYPVLQAADILLYEPHLVPVGEDQRQHLELTRDIARRFNDRYGESLRVPEMLIRK 186
Query: 214 ESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPA 273
E A +V SL+D + KMSKSD S++ + D PE + K K+A +D + +DP RP
Sbjct: 187 EGA-RVMSLQDGTSKMSKSDPSDLSRLNLLDAPEKLRDKIKRAKSDAVMGLKFDP-ARPE 244
Query: 274 VSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHL 333
+NL+T++ L + + P+ + + G++K +LAD+++E +PIR+ + + +L
Sbjct: 245 CTNLLTIYQLLSGESPEAVEARFADAGFGRFKPILADLVIEYLRPIRERYDAIAGESGYL 304
Query: 334 EKVLLDGSIRAQAIAVETWDEVKSAAVGGILTAF 367
E +L +G++RA +A T + ++ G+L F
Sbjct: 305 EGILREGALRASKVAGLTLERIRDRM--GLLPPF 336
>sp|Q8ERU2|SYW_OCEIH Tryptophan--tRNA ligase OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=trpS PE=3
SV=1
Length = 327
Score = 253 bits (647), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 134/322 (41%), Positives = 199/322 (61%), Gaps = 5/322 (1%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
IFSGIQP+GTL LGNY GA+Q + LQN + FCIVD H+IT+ Q +L++NI+ +A
Sbjct: 4 IFSGIQPSGTLTLGNYLGAIQQFVELQND-YNCYFCIVDEHAITVPQDRLELRKNIKSLA 62
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGL 157
A +A GIDP S LF QS+VPEHTQL W+L + V L M Y +K + + L
Sbjct: 63 ALYIASGIDPDSSTLFIQSEVPEHTQLGWMLQSISYVGELERMTQYKDKSQGQEAISSAL 122
Query: 158 FLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQL-LPQDESA 216
YP L AADILLY +P G DQ ++ LA +L Q FNN+F+ IF +P++ +P+
Sbjct: 123 LTYPSLMAADILLYNTDVVPVGDDQKQHLELARNLAQRFNNRFNDIFTVPEVRIPK--VG 180
Query: 217 GKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSN 276
++ SL++P+KKMSKSD + I + D P+ I +K K A+TD V +D EN+P VSN
Sbjct: 181 ARIMSLQEPTKKMSKSDTNQKGFISMLDEPKRIEKKIKSAVTDSEGIVKFDKENKPGVSN 240
Query: 277 LITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKV 336
L+T+++ CT + D+ + G +K +A+ +++ +PI+++ E L++S E L+ +
Sbjct: 241 LLTIYSSCTGESIADLEKKYDGKGYGDFKQGVANAVIDTLRPIQEKYEQLIQSDE-LDAI 299
Query: 337 LLDGSIRAQAIAVETWDEVKSA 358
L G +A A +T + K A
Sbjct: 300 LDQGRDKASFSAGKTIKKAKKA 321
>sp|Q81TS6|SYW_BACAN Tryptophan--tRNA ligase OS=Bacillus anthracis GN=trpS PE=3 SV=1
Length = 329
Score = 253 bits (646), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 131/322 (40%), Positives = 201/322 (62%), Gaps = 5/322 (1%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
IFSGIQP+GT+ LGNY GA++ ++ LQN+ D FCIV+ H+IT+ Q L++NI+ +A
Sbjct: 4 IFSGIQPSGTITLGNYLGAMKQFTELQNE-HDCYFCIVNQHAITVPQDPVQLRKNIRSLA 62
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGL 157
A +ACGIDP+K+ LF QS+VP H QL W++ + V L M Y +K + P GL
Sbjct: 63 ALYVACGIDPEKATLFVQSEVPAHAQLGWIMQSVAYVGELERMTQYKDKASGRDSVPAGL 122
Query: 158 FLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQL-LPQDESA 216
YP L AADILLY +P G DQ ++ L L + FN +F ++F IP++ +P+
Sbjct: 123 LTYPPLMAADILLYNTEIVPVGDDQKQHMELTRDLAERFNKRFREVFTIPEIRIPK--VG 180
Query: 217 GKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSN 276
+V SL +P+KKMSKSD + S I + D P+ I +K K A+TD V +D EN+P +SN
Sbjct: 181 ARVMSLTEPTKKMSKSDPNPKSMISMLDEPKTIEKKIKSAVTDSEGIVKFDKENKPGISN 240
Query: 277 LITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKV 336
L+T+++ + + ++I + G +K LA V+VE +PI+D+ L+ S E L+++
Sbjct: 241 LLTIYSSFSGKTVEEIEAMYEGKGYGDFKGDLAQVVVEAIRPIQDKYNELINSPE-LDEI 299
Query: 337 LLDGSIRAQAIAVETWDEVKSA 358
L G+ +A +A + +V++A
Sbjct: 300 LDKGAEKANRVAFKQLRKVENA 321
>sp|P46579|SYWM_CAEEL Tryptophan--tRNA ligase, mitochondrial OS=Caenorhabditis elegans
GN=wars-2 PE=2 SV=3
Length = 360
Score = 251 bits (640), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 134/329 (40%), Positives = 205/329 (62%), Gaps = 11/329 (3%)
Query: 35 PQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGED---VIFCIVDLHSITIKQ-KHKDLK 90
P F+GIQPTG HLGN+FG+++ W+ LQN + ++ +VD H+I++ +L+
Sbjct: 30 PTIYFTGIQPTGIPHLGNFFGSIEPWTELQNSVDKNILMMLSVVDQHAISLGPLPANELR 89
Query: 91 ENIQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAEL 150
+N M ASL+ACG+DP +++LF+QS VP+ Q++W+L L T ++L +P Y EK
Sbjct: 90 QNTHQMTASLIACGVDPNRTLLFRQSDVPQIAQISWILGSLQTTSKLARLPQYKEKKERF 149
Query: 151 KQS--PTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFD-KIFPIP 207
K+ P GL YP+LQAAD+L +KAT +P G DQ ++NL L FN ++ +IFPIP
Sbjct: 150 KKGDIPVGLLTYPLLQAADVLTFKATTVPVGEDQSQHLNLLGGLAYAFNKTYETEIFPIP 209
Query: 208 QLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYD 267
+ L + ES +++SL++P KKMSKS S+IEITD I+ KC+KA +D VTYD
Sbjct: 210 KQLTR-ESHARIRSLREPEKKMSKSSGGPRSRIEITDSRSTIIEKCQKAQSDNAGKVTYD 268
Query: 268 PENRPAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLM 327
ENR AVSNL+ L++ T +I + T K+ LA+ + ++ PIR + E L
Sbjct: 269 KENRLAVSNLLDLYSAVTKTQTSEI--DFSNWTTLDLKMNLAEAVDKRLAPIRQKFEELQ 326
Query: 328 KSKEHLEKVLLDGSIRAQAIAVETWDEVK 356
+ E ++KVL + +A+ IA + +E++
Sbjct: 327 NTGE-VDKVLTENGEKAREIAEKNLEEIR 354
>sp|Q97LD6|SYW_CLOAB Tryptophan--tRNA ligase OS=Clostridium acetobutylicum (strain ATCC
824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=trpS PE=3 SV=2
Length = 335
Score = 247 bits (631), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 130/317 (41%), Positives = 197/317 (62%), Gaps = 7/317 (2%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
IFSGIQP+G L +GNYFGA++ W LQ++ D +CIVDLH+IT+KQ+ KDL+ +
Sbjct: 8 IFSGIQPSGELTIGNYFGAIKNWVKLQDE-YDCYYCIVDLHAITVKQEAKDLRRRTLQLI 66
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQS--PT 155
A+ +A GIDP+K+ +F QS VP H Q W+L C+ V L+ M + +K + + +
Sbjct: 67 ATYIASGIDPEKNTIFIQSHVPAHVQAQWILNCMSYVGELSRMTQFKDKSKKYEDTGIGA 126
Query: 156 GLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQ-LLPQDE 214
GL YPVL AADIL+Y+A +P G DQ +I L L Q FN+ + + F IP+ +P
Sbjct: 127 GLLNYPVLMAADILIYQADLVPVGKDQTQHIELTRDLAQRFNSTYSETFKIPEGYIPT-- 184
Query: 215 SAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAV 274
K+ SL++P KKMSKS + NS I I DPPEVI RK +A+TD V Y +++P V
Sbjct: 185 GGAKIMSLQEPLKKMSKSSDNPNSFILIMDPPEVIKRKIARAVTDNVGVVKY-TDDQPGV 243
Query: 275 SNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLE 334
NL+ + + CT +DI + + ++K +AD L+++ +PI++++ L+K K +L+
Sbjct: 244 KNLMNIMSCCTGMSVKDIEDKYEGQGYSKFKEDVADALIQELEPIQNKVNELLKDKAYLQ 303
Query: 335 KVLLDGSIRAQAIAVET 351
+ G+ +A IA +T
Sbjct: 304 DICKKGAQKASYIANKT 320
>sp|Q9K8Y2|SYW_BACHD Tryptophan--tRNA ligase OS=Bacillus halodurans (strain ATCC BAA-125
/ DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=trpS PE=3
SV=1
Length = 330
Score = 246 bits (629), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 130/322 (40%), Positives = 199/322 (61%), Gaps = 5/322 (1%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
+FSGIQP+GTL LGNY GA++ + +LQ + + FCIVD H+IT+ Q L+ENI+ +A
Sbjct: 5 VFSGIQPSGTLTLGNYLGAMKHFVSLQ-EDYNCYFCIVDQHAITVPQDRLKLRENIRSLA 63
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGL 157
A LA GIDP K+ LF QS+VP H QL W++ C+ + L M + +K + L
Sbjct: 64 ALYLAVGIDPSKATLFIQSEVPAHAQLGWMMQCVSYIGELERMTQFKDKSDGKEAVSASL 123
Query: 158 FLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQL-LPQDESA 216
YP L AADILLY +P G DQ ++ L L + FN K++ IF IP++ +P+
Sbjct: 124 LTYPPLMAADILLYHTNIVPVGEDQKQHLELTRDLAERFNKKYNDIFTIPEVQIPK--VG 181
Query: 217 GKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSN 276
++ SL DPSKKMSKS+ + S I + D + I +K K A+TD V +D EN+PA+SN
Sbjct: 182 ARIMSLNDPSKKMSKSNPNPKSYISMLDDEKTITKKIKSAVTDSDGIVKFDKENKPAISN 241
Query: 277 LITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKV 336
L+++++LC +++ Q G++K LA V+V+ KPI++ E L++S+E L+ +
Sbjct: 242 LLSIYSLCKGASIEEVEAQFVGKGYGEFKESLAQVVVDTLKPIQERYEQLIQSEE-LDHI 300
Query: 337 LLDGSIRAQAIAVETWDEVKSA 358
L G+ +A +A +T ++ + A
Sbjct: 301 LDQGADKANRVARKTLEKAERA 322
>sp|Q8YXE4|SYW_NOSS1 Tryptophan--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=trpS PE=3 SV=1
Length = 335
Score = 244 bits (622), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 129/327 (39%), Positives = 197/327 (60%), Gaps = 6/327 (1%)
Query: 36 QRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQL 95
QR+ SG+QPTG LHLGNY GA++ W +Q++ D FC+VDLH+IT+ L +
Sbjct: 4 QRVLSGVQPTGNLHLGNYLGAIRNWVEIQDQ-YDNFFCVVDLHAITVPHNPATLAADTYA 62
Query: 96 MAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQS-P 154
+AA LACGID + S +F QS V H++LAW L C+ +N L M + EK + ++
Sbjct: 63 IAALYLACGIDLKYSNIFVQSHVSAHSELAWFLNCITPLNWLQDMIQFKEKAVKQGENVG 122
Query: 155 TGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPI---PQLLP 211
GL +YPVL AADILLY+A +P G DQ ++ L + FN++F K P+ P+ L
Sbjct: 123 AGLLIYPVLMAADILLYQADKVPVGEDQKQHLELTRDIVNRFNHQFAKDKPVMKLPEPLI 182
Query: 212 QDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENR 271
+ E A +V SL D ++KMSKSD S+I + DPP+ I K K+ TD +T+D R
Sbjct: 183 RKEGA-RVMSLTDGTRKMSKSDPSELSRINLLDPPDQIANKIKRCKTDPVKGLTFDDPER 241
Query: 272 PAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKE 331
P +NL+TL+ L + + +++ + + + GQ+K L + + KPI+++ + + K
Sbjct: 242 PECNNLLTLYMLLSGKKKEEVAAECQDMGWGQFKPLFTETAINALKPIQEKYQEITADKG 301
Query: 332 HLEKVLLDGSIRAQAIAVETWDEVKSA 358
+LE VL DG +A+ +A +T +VK+A
Sbjct: 302 YLESVLRDGREKAETVANQTLADVKAA 328
>sp|P21656|SYW_BACSU Tryptophan--tRNA ligase OS=Bacillus subtilis (strain 168) GN=trpS
PE=1 SV=2
Length = 330
Score = 241 bits (614), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 126/324 (38%), Positives = 202/324 (62%), Gaps = 5/324 (1%)
Query: 36 QRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQL 95
Q IFSGIQP+G++ LGNY GA++ + LQ+ + FCIVD H+IT+ Q +L++NI+
Sbjct: 3 QTIFSGIQPSGSVTLGNYIGAMKQFVELQHD-YNSYFCIVDQHAITVPQDRLELRKNIRN 61
Query: 96 MAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPT 155
+AA LA G+DP+K+ LF QS+VP H Q W++ C+ + L M + +K + +
Sbjct: 62 LAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGELERMTQFKDKSKGNEAVVS 121
Query: 156 GLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQL-LPQDE 214
GL YP L AADILLY +P G DQ ++ L +L + FN K++ IF IP++ +P+
Sbjct: 122 GLLTYPPLMAADILLYGTDLVPVGEDQKQHLELTRNLAERFNKKYNDIFTIPEVKIPK-- 179
Query: 215 SAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAV 274
++ SL DP KKMSKSD + + I + D P+ + +K K A+TD V +D EN+P V
Sbjct: 180 VGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKSAVTDSEGIVKFDKENKPGV 239
Query: 275 SNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLE 334
SNL+T++++ N +++ + + G++K LA+V+V KPI+D L++S E L+
Sbjct: 240 SNLLTIYSILGNTTIEELEAKYEGKGYGEFKGDLAEVVVNALKPIQDRYYELIES-EELD 298
Query: 335 KVLLDGSIRAQAIAVETWDEVKSA 358
++L +G+ RA A + ++++A
Sbjct: 299 RILDEGAERANRTANKMLKKMENA 322
>sp|P00953|SYW_GEOSE Tryptophan--tRNA ligase OS=Geobacillus stearothermophilus GN=trpS
PE=1 SV=1
Length = 328
Score = 238 bits (607), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 124/322 (38%), Positives = 197/322 (61%), Gaps = 5/322 (1%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
IFSGIQP+G + +GNY GA++ + LQ++ + FCIVD H+IT+ Q +L++NI+ +A
Sbjct: 4 IFSGIQPSGVITIGNYIGALRQFVELQHE-YNCYFCIVDQHAITVWQDPHELRQNIRRLA 62
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGL 157
A LA GIDP ++ LF QS+VP H Q AW+L C+ + L M + EK A + GL
Sbjct: 63 AKYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGKEAVSAGL 122
Query: 158 FLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQL-LPQDESA 216
YP L AADILLY +P G DQ +I L L + FN ++ ++F IP+ +P+
Sbjct: 123 LTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPK--VG 180
Query: 217 GKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSN 276
++ SL DP+KKMSKSD + + I + D + I +K K A+TD + YD E +P +SN
Sbjct: 181 ARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGTIRYDKEAKPGISN 240
Query: 277 LITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKV 336
L+ +++ + Q +++ Q + G +K LA V++E +PI++ + M+S+E L++V
Sbjct: 241 LLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWMESEE-LDRV 299
Query: 337 LLDGSIRAQAIAVETWDEVKSA 358
L +G+ +A +A E +++ A
Sbjct: 300 LDEGAEKANRVASEMVRKMEQA 321
>sp|Q8FRR3|SYW_COREF Tryptophan--tRNA ligase OS=Corynebacterium efficiens (strain DSM
44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
GN=trpS PE=3 SV=1
Length = 346
Score = 236 bits (602), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 127/332 (38%), Positives = 186/332 (56%), Gaps = 7/332 (2%)
Query: 28 SDHKISFPQRIFSGIQPTG-TLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKH 86
+DH P R+ SGIQPT + HLGNY GAV+ W LQN D + I DLH+IT+ Q
Sbjct: 6 NDHTAQTPARVLSGIQPTADSYHLGNYLGAVKQWIDLQNS-YDAFYFIPDLHAITVDQNP 64
Query: 87 KDLKENIQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEK 146
++L+ AA LLA GIDP++S LF QS +P H +L+WVLTCL + M + +K
Sbjct: 65 EELRARTVSGAAQLLALGIDPERSTLFVQSHIPAHAELSWVLTCLTGFGEASRMTQFKDK 124
Query: 147 CAE--LKQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIF 204
+ +++ GLF YP+L AADILLY+ +P G DQ ++ L L + FNN+F +F
Sbjct: 125 STKQGAERTSAGLFTYPMLMAADILLYRPQLVPVGEDQRQHLELTRTLAERFNNRFGTVF 184
Query: 205 PIPQ-LLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSA 263
+P+ +P E A K+ L++P+ KMSKS + I + D P+V ++ K A+TD
Sbjct: 185 EVPEGFIP--EGASKIYDLQNPTAKMSKSGENPKGLINLLDDPKVSSKRIKSAVTDNDGV 242
Query: 264 VTYDPENRPAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEI 323
+ +D N+P VSNL+ + + T + + + G K AD L P+R +
Sbjct: 243 IAFDVANKPGVSNLLVIQSALTGESVDKLVAGYEGKGYGALKTDTADALEAFTTPLRAKY 302
Query: 324 EYLMKSKEHLEKVLLDGSIRAQAIAVETWDEV 355
+ M + LE+VL G+ RA IA + EV
Sbjct: 303 DEYMSDRAELERVLAIGAERAGEIATKVLAEV 334
>sp|Q8XMQ5|SYW_CLOPE Tryptophan--tRNA ligase OS=Clostridium perfringens (strain 13 /
Type A) GN=trpS PE=3 SV=1
Length = 332
Score = 236 bits (601), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 126/315 (40%), Positives = 188/315 (59%), Gaps = 4/315 (1%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
IFSGI+P+G L LGNY GA++ W+ LQ + D FC+VDLH+IT+KQ DL+ +
Sbjct: 8 IFSGIKPSGDLTLGNYLGAIKNWTKLQEE-YDCYFCVVDLHAITVKQLPADLRRRTLEVL 66
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQS-PTG 156
A +A GI+P+++ LF QS VP H++ +W+LTC + L+ M Y +K ++ S G
Sbjct: 67 AIYIASGINPEENTLFIQSHVPAHSEASWLLTCNSYMGELSRMTQYKDKSKKMGDSIGAG 126
Query: 157 LFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESA 216
LF YPVL AADILLY A +P G DQ+ ++ LA + FNN + K F IP+ E A
Sbjct: 127 LFNYPVLMAADILLYNADLVPVGKDQMQHLELARDIGTRFNNSYSKTFTIPEGYVPKEGA 186
Query: 217 GKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSN 276
K+ L+DPSKKMSKSD + N I I D P VI +K +A+TD V Y E +P V N
Sbjct: 187 -KIMDLQDPSKKMSKSDANPNGFILIMDEPNVIRKKISRAVTDSIGIVNYTDE-QPGVKN 244
Query: 277 LITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKV 336
LI + P ++ ++K +A+ +VE+ P++++++ L+ K+ LE++
Sbjct: 245 LINILCAIKGYTPDEVVKMYDGKGYAEFKNDVAEAIVEELAPVQEKVKALLGDKKALEEI 304
Query: 337 LLDGSIRAQAIAVET 351
G+ +A A++T
Sbjct: 305 YKKGAEKANYAAMKT 319
>sp|Q82HU1|SYW1_STRAW Tryptophan--tRNA ligase 1 OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=trpS1 PE=3 SV=1
Length = 337
Score = 235 bits (600), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 130/318 (40%), Positives = 190/318 (59%), Gaps = 5/318 (1%)
Query: 37 RIFSGIQPT-GTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQL 95
R+ SGIQPT G+ HLGNY GAV+ W ALQ + D + +VDLH+IT+ Q DL+ N +L
Sbjct: 7 RVLSGIQPTAGSFHLGNYLGAVRQWVALQ-ESHDAFYMVVDLHAITVPQDPADLRANTRL 65
Query: 96 MAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAE--LKQS 153
AA LLA G+DP++ LF QS VPEH QLAW++ CL + M + +K A+ ++
Sbjct: 66 AAAQLLAAGLDPERCTLFVQSHVPEHAQLAWIMNCLTGFGEASRMTQFKDKSAKQGADRA 125
Query: 154 PTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQD 213
GLF YPVLQ ADILLY+A +P G DQ +I L L + FN +F + F +P+
Sbjct: 126 SVGLFTYPVLQVADILLYQANEVPVGEDQRQHIELTRDLAERFNGRFGETFTVPKPYILK 185
Query: 214 ESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPA 273
E+A K+ L+DPS KMSKS I + D P+ +K K A+TD + + YD E++P
Sbjct: 186 ETA-KIFDLQDPSIKMSKSASTPKGLINLLDEPKATAKKVKSAVTDTDTVIRYDAEHKPG 244
Query: 274 VSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHL 333
+SNL+T+++ T ++ + G K LA+V+V+ P R+ + + E L
Sbjct: 245 ISNLLTIYSTLTGTGIPELEEKYTGKGYGALKTDLAEVMVDFVTPFRERTQQYLDDPETL 304
Query: 334 EKVLLDGSIRAQAIAVET 351
+ +L G+ +A+A+A ET
Sbjct: 305 DSILAKGAEKARAVAAET 322
>sp|Q89W91|SYW_BRAJA Tryptophan--tRNA ligase OS=Bradyrhizobium japonicum (strain USDA
110) GN=trpS PE=3 SV=1
Length = 350
Score = 235 bits (600), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 132/338 (39%), Positives = 195/338 (57%), Gaps = 20/338 (5%)
Query: 32 ISFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSIT----IKQKHK 87
+ F +R+FSG+QPTG LHLGNY GA+ + +Q + I+C+VD+H+IT +
Sbjct: 1 MPFVERVFSGVQPTGNLHLGNYLGAIVNFVKMQET-HNCIYCVVDMHAITQGVDVWGGPV 59
Query: 88 DLKENIQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKC 147
+L N + + A+ +A GIDP+K I+F QSQV H +LAW+ C+ + L M + EK
Sbjct: 60 ELARNTREVTAAFIASGIDPKKHIVFNQSQVSGHAELAWIFNCVARMGWLGRMTQFKEKA 119
Query: 148 AELKQSPT-GLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKF-DKI-- 203
+ +++ + GLF YPVL AADILLY+ATH+P G DQ ++ L+ + Q FNN F D I
Sbjct: 120 GKDRENASVGLFDYPVLMAADILLYRATHVPVGEDQKQHLELSRDIAQKFNNDFGDSIRA 179
Query: 204 --------FPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKK 255
FP+P+ A +V SL+D +KKMSKSD NS+I +TD + I +K +K
Sbjct: 180 QGTNDGLFFPLPEPFITG-PATRVMSLRDGTKKMSKSDASDNSRINLTDDADTIAQKIRK 238
Query: 256 ALTDCTSAVTYDP--ENRPAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLV 313
A TD T + E RP NL+ + A ++ D+ +K LA++ V
Sbjct: 239 AKTDPEPLPTEEKGLEARPEADNLVGIFAALADRSKADVLRDFGGGQFSSFKNALAELCV 298
Query: 314 EKFKPIRDEIEYLMKSKEHLEKVLLDGSIRAQAIAVET 351
K PI E++ L+ H++ +L +GS RA+AIA ET
Sbjct: 299 TKLAPIAGEMKRLVADPGHIDAILNEGSDRARAIADET 336
>sp|Q98C31|SYW_RHILO Tryptophan--tRNA ligase OS=Rhizobium loti (strain MAFF303099)
GN=trpS PE=3 SV=1
Length = 355
Score = 234 bits (598), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 130/347 (37%), Positives = 196/347 (56%), Gaps = 25/347 (7%)
Query: 33 SFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKEN 92
+F +FSG+QPTG LHLGNY GA++ + ALQ D I+C+VDLHS+T + H+DL +
Sbjct: 3 AFKPLVFSGVQPTGNLHLGNYLGAIKKFVALQET-SDCIYCVVDLHSLTAQLVHEDLADQ 61
Query: 93 IQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQ 152
+ + A+ LA GIDP+K I+F QS+V +H +LAW+ C+ + +N M + +K + ++
Sbjct: 62 TRSITAAFLASGIDPKKHIVFNQSRVMQHAELAWIFNCVARIGWMNKMTQFKDKAGKDRE 121
Query: 153 SPT-GLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKF-DKI------- 203
+ + GL YP L AADILLY+ATH+P G DQ ++ L + Q FNN F D+I
Sbjct: 122 NASLGLLAYPSLMAADILLYRATHVPVGEDQKQHLELTRDIAQKFNNDFSDRIARLGVGV 181
Query: 204 ------------FPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVR 251
FPI + + +A ++ SL+D SKKMSKSD S+I +TD + I +
Sbjct: 182 EMQVGEETVNGFFPITEPVIGGPAA-RIMSLRDGSKKMSKSDPSDLSRINLTDDADTISK 240
Query: 252 KCKKALTDCTS--AVTYDPENRPAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLA 309
K +KA TD + + E+RP NL+ ++A D+ + +K LA
Sbjct: 241 KIRKAKTDPEALPSEVSGLESRPEAENLVGIYAGLAEMSKADVLKEFGGQQFSVFKPALA 300
Query: 310 DVLVEKFKPIRDEIEYLMKSKEHLEKVLLDGSIRAQAIAVETWDEVK 356
D+ VEK PI E+ + + +++ VL DG RA +A T V+
Sbjct: 301 DLAVEKLAPIAGEMRRIEGDRAYVDAVLRDGGERAGVLAETTMKTVR 347
>sp|Q8NSJ4|SYW_CORGL Tryptophan--tRNA ligase OS=Corynebacterium glutamicum (strain ATCC
13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
GN=trpS PE=3 SV=1
Length = 345
Score = 234 bits (598), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 127/323 (39%), Positives = 185/323 (57%), Gaps = 7/323 (2%)
Query: 37 RIFSGIQPTG-TLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQL 95
R+ SGIQPT + HLGNY GAV+ W LQ+ D + I DLH+IT+ Q+ ++L+
Sbjct: 15 RVLSGIQPTADSYHLGNYLGAVKQWIDLQDS-YDAFYFIPDLHAITVDQEPEELRNRTIS 73
Query: 96 MAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAE--LKQS 153
AA LLA GIDP++S LF QS VP H +L+WVLTCL + M + +K ++ ++
Sbjct: 74 GAAQLLALGIDPERSTLFVQSHVPAHAELSWVLTCLTGFGEASRMTQFKDKSSKRGADRT 133
Query: 154 PTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQ-LLPQ 212
GLF YP+L AADILLY+ +P G DQ ++ L L + FNN+F K F +P+ +PQ
Sbjct: 134 SAGLFTYPMLMAADILLYRPHLVPVGEDQRQHLELTRTLAERFNNRFGKAFEVPEGFIPQ 193
Query: 213 DESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRP 272
A K+ L++P+ KMSKS + I + D P+V ++ K A+TD + YDPEN+P
Sbjct: 194 --GASKIYDLQNPTAKMSKSGDNPKGIINLLDDPKVSTKRIKSAVTDNDGVIAYDPENKP 251
Query: 273 AVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEH 332
VSNL+ + + T + + G K AD L P++ + + M +
Sbjct: 252 GVSNLLVIQSALTGTSIDSLVDGYQGAGYGALKGDTADALEAFTTPLKAKYDEYMNDRGE 311
Query: 333 LEKVLLDGSIRAQAIAVETWDEV 355
LE+VL G+ RA +A ET +V
Sbjct: 312 LERVLAIGAERATEVANETLADV 334
>sp|Q7MAE0|SYW_WOLSU Tryptophan--tRNA ligase OS=Wolinella succinogenes (strain ATCC
29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W)
GN=trpS PE=3 SV=1
Length = 328
Score = 234 bits (597), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 130/324 (40%), Positives = 196/324 (60%), Gaps = 6/324 (1%)
Query: 36 QRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQL 95
+R+FSGIQPTG +HLGNY GAV+ W Q++ D IFCIV+ H+ITIKQ L+
Sbjct: 4 KRVFSGIQPTGNIHLGNYLGAVKNWVDSQDEF-DNIFCIVNSHAITIKQDPALLRAKTYE 62
Query: 96 MAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAE-LKQSP 154
+AA LLACGID +KS LF QS+V EH LAW+L C + ++ M + +K + K
Sbjct: 63 LAAVLLACGIDMKKSKLFIQSEVDEHAALAWILDCNIPMGDMSRMTQFKDKSQKNPKNIN 122
Query: 155 TGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQ-LLPQD 213
GLF YP L AADILLY+ +P G DQ ++ L + + FN + + F IP+ ++P+
Sbjct: 123 IGLFNYPALMAADILLYQTDFVPVGEDQKQHLELTRDVAERFNRDYGETFKIPEPMIPK- 181
Query: 214 ESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPA 273
++ L DP+KKMSKS+ N I + D P+ I++K KKA TD + V ++PE +
Sbjct: 182 -MGARIMGLDDPTKKMSKSEGKPNHGIALLDTPDEILKKFKKATTDSENLVRFNPE-QIG 239
Query: 274 VSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHL 333
+ NL+T++ + T + I + + G +K+ +A+ ++E KPI++ L K + +L
Sbjct: 240 IFNLLTIYQIFTGYSQEVIEAEFEGKGYGIFKVAVAEAVIEGLKPIQERYAKLTKEQGYL 299
Query: 334 EKVLLDGSIRAQAIAVETWDEVKS 357
E+VL G+ + IA +T+ EVK
Sbjct: 300 EEVLSHGASEVRKIAQKTYKEVKE 323
>sp|Q7VIP6|SYW_HELHP Tryptophan--tRNA ligase OS=Helicobacter hepaticus (strain ATCC
51449 / 3B1) GN=trpS PE=3 SV=1
Length = 332
Score = 233 bits (595), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 128/326 (39%), Positives = 192/326 (58%), Gaps = 6/326 (1%)
Query: 33 SFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKEN 92
S +RIFSGIQPTG +HLGNY GAV+ W Q + E+ IFC+V+ H+ITI+Q ++L+
Sbjct: 5 SSKKRIFSGIQPTGNIHLGNYLGAVRHWVDSQEQYEN-IFCVVNSHAITIRQDPQELQNK 63
Query: 93 IQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAEL-K 151
+A LLACGID +KS LF QSQ+ EH LAW+L C + ++ M + +K + K
Sbjct: 64 TYELAGILLACGIDTKKSHLFIQSQIDEHAALAWILDCNIPMGDMSRMTQFKDKSNKNPK 123
Query: 152 QSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQ-LL 210
GLF YP L AADILLY+A +P G DQ ++ L + FN + + F IP+ ++
Sbjct: 124 NINVGLFNYPALMAADILLYQADFVPVGEDQKQHLELTRDVAMRFNRDYGECFNIPEPMI 183
Query: 211 PQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPEN 270
PQ +V L +P KMSKS N I + D P+VI RKCKKA+TD S + +D E+
Sbjct: 184 PQ--VGARVMGLDNPQSKMSKSAQGENHAIFLLDSPDVITRKCKKAVTDSQSNIVFD-ES 240
Query: 271 RPAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSK 330
R + NL+ ++ + T + + I + + G K+ LA+V++E +PI+ + + K
Sbjct: 241 RAGLYNLLCIYEIFTQKSRKSIEAEFEGKGYGHLKMALAEVIIESLRPIQQSYAKISQDK 300
Query: 331 EHLEKVLLDGSIRAQAIAVETWDEVK 356
+++ VL + + IA T++ K
Sbjct: 301 TYIQSVLTKSADSIRPIAKNTYENAK 326
>sp|Q8EK12|SYW_SHEON Tryptophan--tRNA ligase OS=Shewanella oneidensis (strain MR-1)
GN=trpS PE=3 SV=1
Length = 332
Score = 233 bits (595), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 127/322 (39%), Positives = 191/322 (59%), Gaps = 7/322 (2%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
+ SG QP+G L +GNY GA++ W A+Q+ D ++C+VDLH+IT++Q + L+E
Sbjct: 6 VLSGAQPSGELTIGNYMGALRQWVAMQDS-HDCLYCVVDLHAITVRQDPQALREACLDTL 64
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQS-PTG 156
A LACG+DP+KS +F QSQVP+HTQL W L C + L+ M + +K + + G
Sbjct: 65 ALYLACGVDPKKSTVFIQSQVPQHTQLGWALNCYTQMGELSRMTQFKDKSQKHANNINVG 124
Query: 157 LFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQ-LLPQDES 215
LF YPVL AADILLY+A IP G DQ ++ L + FNN + + F IP+ +P E
Sbjct: 125 LFGYPVLMAADILLYQANEIPVGQDQKQHLELTRDIATRFNNAYGETFTIPEPFIP--EH 182
Query: 216 AGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTS--AVTYDPENRPA 273
KV SL+DP KKMSKSD + N+ I + + P+ +++K KKA+TD V +D EN+P
Sbjct: 183 GAKVMSLQDPLKKMSKSDDNRNNVIGLLEDPKAVMKKLKKAMTDSDEPPVVRFDIENKPG 242
Query: 274 VSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHL 333
VSNL++L + T Q + + + G K + +V +P+++ L + +L
Sbjct: 243 VSNLLSLMSGITGQSIASLEAEFEGKMYGHLKGAAGEAVVGMLEPLQERYRALRADRAYL 302
Query: 334 EKVLLDGSIRAQAIAVETWDEV 355
++V+ G+ AQA A T +V
Sbjct: 303 DQVMRAGAENAQARAEVTLKKV 324
>sp|Q49901|SYW_MYCLE Tryptophan--tRNA ligase OS=Mycobacterium leprae (strain TN) GN=trpS
PE=3 SV=1
Length = 343
Score = 233 bits (595), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 132/326 (40%), Positives = 179/326 (54%), Gaps = 9/326 (2%)
Query: 37 RIFSGIQPTG-TLHLGNYFGAVQTWSALQNKGED---VIFCIVDLHSITIKQKHKDLKEN 92
RIFSG+QPT +LHLGN GA+ W ALQ D FC+VDLH+ITI Q + L
Sbjct: 9 RIFSGVQPTSDSLHLGNALGAITQWVALQYDHPDEYEAFFCVVDLHAITIAQDPETLWRR 68
Query: 93 IQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQ 152
+ AA LA GIDP ++++F QS VP HTQLAWVL C + + M + +K
Sbjct: 69 TLVTAAQYLALGIDPGRAVVFVQSHVPAHTQLAWVLGCFTGFGQASRMTQFKDKALRQGA 128
Query: 153 SPT--GLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQL- 209
T GLF YPVLQAAD+L Y +P G DQ ++ LA L Q FN++F F +P +
Sbjct: 129 DSTTVGLFTYPVLQAADVLAYDTDLVPVGEDQRQHLELARDLAQRFNSRFPDTFVVPDMF 188
Query: 210 LPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPE 269
+P+ A K+ L DP+ KMSKS I + D P + V+K + A+TD + YDPE
Sbjct: 189 IPK--MAAKIYDLADPTSKMSKSASSDAGLINLLDDPALSVKKIRAAVTDSEREIRYDPE 246
Query: 270 NRPAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKS 329
+P VSNL+ + + T + + G K A+ +VE PI+D ++ LM
Sbjct: 247 VKPGVSNLLNIQSAVTGVDVDTLVQRYVGHGYGDLKKDTAEAVVEFVSPIKDRVDELMAD 306
Query: 330 KEHLEKVLLDGSIRAQAIAVETWDEV 355
LE VL G+ RAQ +A +T V
Sbjct: 307 LTELEVVLAVGAQRAQDVAGKTMQRV 332
>sp|Q92HR1|SYW_RICCN Tryptophan--tRNA ligase OS=Rickettsia conorii (strain ATCC VR-613 /
Malish 7) GN=trpS PE=3 SV=1
Length = 330
Score = 233 bits (594), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/321 (39%), Positives = 199/321 (61%), Gaps = 4/321 (1%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
+ SG+Q TG+LHLGNY GA++ W +Q + + F + DLH+IT+ K +L +I +
Sbjct: 5 VLSGVQATGSLHLGNYLGAIKNWVKMQEE-YNCFFFLADLHAITVDIKPSELNNSIMEVL 63
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKC-AELKQSPTG 156
A LA G++P K +F QS V EHT+LAW+L C+ + L M + +K ++ +++ G
Sbjct: 64 AVYLAAGLNPDKVTIFAQSMVKEHTELAWLLNCVTPLGWLKRMTQFKDKAGSDQEKACLG 123
Query: 157 LFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDK-IFPIPQLLPQDES 215
LF YPVL AADIL+YKA +P G DQ ++ L + + N KF+K I +P++L E+
Sbjct: 124 LFSYPVLMAADILIYKADIVPVGEDQKQHLELTRDIAGVINRKFNKEILKVPEVLIS-ET 182
Query: 216 AGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVS 275
++ SL+D KKMSKSD+ S+I + D ++I +K KKA TD S V+YD E RP +S
Sbjct: 183 GTRIMSLRDGLKKMSKSDISDFSRINLKDDNDLIHQKIKKAKTDHLSFVSYDQETRPEIS 242
Query: 276 NLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEK 335
NL+ +++ + + + I ++ ++K LA++++ +PIRD+ LM KE+L K
Sbjct: 243 NLLDIYSSLSEESLEQIIGNYQNQGFAKFKEDLAEIIITNLQPIRDKYLELMNDKEYLLK 302
Query: 336 VLLDGSIRAQAIAVETWDEVK 356
+L G+ +A+ A ET +EVK
Sbjct: 303 ILHKGAEKARIRASETVNEVK 323
>sp|Q8Y577|SYW_LISMO Tryptophan--tRNA ligase OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=trpS PE=3 SV=1
Length = 331
Score = 232 bits (591), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 125/321 (38%), Positives = 190/321 (59%), Gaps = 3/321 (0%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
IFSGIQP+G L LGNY GA++ + Q++ E +CIVD H+IT+ Q L+E + +A
Sbjct: 5 IFSGIQPSGQLTLGNYIGALKQFGQFQDEYE-CFYCIVDEHAITVPQDRLKLREQTRSLA 63
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGL 157
A LA G+DP+KS LF QS+V H Q AW+L C + L M + +K A GL
Sbjct: 64 ALYLAVGLDPEKSTLFIQSEVAAHAQAAWILQCNVYIGELERMTQFKDKSAGKAGVSAGL 123
Query: 158 FLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAG 217
YP L AADILLY+ +P G DQ +I L L + FN K IF +P++ + A
Sbjct: 124 LTYPPLMAADILLYQTDLVPVGEDQKQHIELTRDLAERFNKKHADIFTMPEVFIPKQGA- 182
Query: 218 KVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSNL 277
+V SL+DP+KKMSKSD + + I + DPP I +K K A+TD + + Y+ E +P VSNL
Sbjct: 183 RVMSLQDPTKKMSKSDANLKNAIFLLDPPATIRKKIKSAVTDSSGIIEYNKEEKPGVSNL 242
Query: 278 ITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVL 337
+T++++ T + I + G +K LA+++V + +PI++ +KS E L+ +L
Sbjct: 243 LTIYSVITGETIASIEEKYVGKGYGDFKTDLAELVVSELEPIQERYYAYLKS-EELDTIL 301
Query: 338 LDGSIRAQAIAVETWDEVKSA 358
G+ +A +A +T ++++
Sbjct: 302 DAGAEKAARVANKTLKKMENG 322
>sp|Q4UL98|SYW_RICFE Tryptophan--tRNA ligase OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=trpS PE=3 SV=1
Length = 330
Score = 231 bits (588), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 124/321 (38%), Positives = 197/321 (61%), Gaps = 4/321 (1%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
+ SG+Q TG+LHLGNY G+++ W +Q + + F + DLH+IT+ K +L +I +
Sbjct: 5 VLSGVQATGSLHLGNYLGSIRNWVKMQEE-YNCFFFLADLHAITVDIKPSELNNSIMGVL 63
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKC-AELKQSPTG 156
A LA G++P K +F QS V EH +LAW+L C+ + L M + +K ++ +++ G
Sbjct: 64 AVYLAAGLNPDKVTIFAQSMVKEHAELAWLLNCVTPLGWLKRMTQFKDKAGSDQEKACLG 123
Query: 157 LFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDK-IFPIPQLLPQDES 215
LF YPVL AADIL+YKA +P G DQ ++ L + + N +FDK I +P++L E+
Sbjct: 124 LFSYPVLMAADILIYKADIVPVGEDQKQHLELTRDIAGVINRRFDKEILKVPEVLIS-ET 182
Query: 216 AGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVS 275
++ SL+D KKMSKSD+ S+I + D ++I +K KKA TD S V+YD E RP +S
Sbjct: 183 GTRIMSLRDGLKKMSKSDISDFSRINLKDDNDLIHQKIKKAKTDHLSFVSYDKETRPEIS 242
Query: 276 NLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEK 335
NL+ ++ + + + I ++ ++K LA++++ +PIRD+ LM KE+L K
Sbjct: 243 NLLDIYRSLSEESLEKIINNYQNQGFSKFKEDLAEIIITNLQPIRDKYLELMNDKEYLLK 302
Query: 336 VLLDGSIRAQAIAVETWDEVK 356
+L G+ +A+ A ET +EVK
Sbjct: 303 ILHKGAEKARIRASETVNEVK 323
>sp|Q7V286|SYW_PROMP Tryptophan--tRNA ligase OS=Prochlorococcus marinus subsp. pastoris
(strain CCMP1986 / MED4) GN=trpS PE=3 SV=1
Length = 338
Score = 230 bits (586), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 122/327 (37%), Positives = 191/327 (58%), Gaps = 7/327 (2%)
Query: 36 QRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQL 95
+RI SG+QPTG LH+GN+ GA+ W LQ K E C+VDLH+IT + K L +N
Sbjct: 5 KRILSGVQPTGDLHIGNWLGAINNWVELQEKHE-TFLCVVDLHAITTEYDTKQLSKNTLS 63
Query: 96 MAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPT 155
AA +ACGI+P+ +F QSQ+ H++L W+L C+ +N + M + EK + + +
Sbjct: 64 TAALYIACGINPKICSIFVQSQISAHSELCWILNCMTPINWMERMIQFKEKSIQQGNNVS 123
Query: 156 -GLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQ-LFNNKFDK---IFPIPQLL 210
GLF YP+L AADILLY A ++P G DQ ++ LA + Q N KF K I IPQ +
Sbjct: 124 IGLFDYPILMAADILLYDADYVPVGEDQKQHLELAKDIAQQRINAKFGKEENILKIPQPI 183
Query: 211 PQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPEN 270
+ + K+ SL D SKKMSKSD++ S+I + D PE+I +K K+A +D + ++
Sbjct: 184 IMKKGS-KIMSLNDGSKKMSKSDINEGSRINLLDTPEIITKKIKRAKSDSYMGMEFNNPE 242
Query: 271 RPAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSK 330
RP NL+ +++L + + ++ + G +K + + ++E KPI++ + L+
Sbjct: 243 RPESRNLLMIYSLLSGKEVSELENDLSQTGWGTFKKIFTEQIIESLKPIQERYQVLINDP 302
Query: 331 EHLEKVLLDGSIRAQAIAVETWDEVKS 357
L K+L+ G +A+ +A +T VKS
Sbjct: 303 HELNKILIQGKEKAEVVANKTLSRVKS 329
>sp|Q92SI9|SYW_RHIME Tryptophan--tRNA ligase OS=Rhizobium meliloti (strain 1021) GN=trpS
PE=3 SV=1
Length = 354
Score = 229 bits (584), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/345 (37%), Positives = 194/345 (56%), Gaps = 23/345 (6%)
Query: 34 FPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENI 93
F +FSG+QPTG LHLGNY GA++ + ALQ + D I+C+VDLHSIT + H+DL I
Sbjct: 4 FKPLVFSGVQPTGNLHLGNYLGAIRKFVALQ-ENNDCIYCVVDLHSITAQLVHEDLPGQI 62
Query: 94 QLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQS 153
+ +AA+ +A GIDP+K I+F QS VP+H +LAW+ C+ + +N M + +K + +++
Sbjct: 63 RSIAAAFIASGIDPEKHIVFNQSAVPQHAELAWIFNCVARIGWMNRMTQFKDKAGKDREN 122
Query: 154 PT-GLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKF-----------D 201
+ GL YP L AADIL+Y+ATH+P G DQ ++ L + Q FN F D
Sbjct: 123 ASLGLLAYPSLMAADILVYRATHVPVGDDQKQHLELTRDIAQKFNIDFMEHIRRGGYGVD 182
Query: 202 KIF---PIPQLLPQDE-----SAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKC 253
+ PI P E A +V SL+D +KKMSKSD S+I + D + I++K
Sbjct: 183 IVVGEEPIHAYFPPVEPLIGGPAPRVMSLRDGTKKMSKSDPSDLSRINLMDDADTILKKI 242
Query: 254 KKALTDCTSAVTYDP--ENRPAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADV 311
+KA TD + + ++RP NL+ ++A ++ +++ + +K LAD+
Sbjct: 243 RKAKTDPDALPSEADGLKDRPEAENLVGIYAALADRSKEEVLAEFGGQQFSTFKPALADL 302
Query: 312 LVEKFKPIRDEIEYLMKSKEHLEKVLLDGSIRAQAIAVETWDEVK 356
V PI E+ LM H++ +L G RA+ A T EV+
Sbjct: 303 AVSVLSPITGEMRRLMGDTAHIDAILRKGGERARERAETTMREVR 347
>sp|Q7VBM9|SYW_PROMA Tryptophan--tRNA ligase OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=trpS PE=3 SV=1
Length = 339
Score = 229 bits (584), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/331 (38%), Positives = 199/331 (60%), Gaps = 12/331 (3%)
Query: 36 QRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQL 95
+R+ SG+QPTG +H+GN+ GA++ W +LQN+ D C+VDLH+IT+ + LKEN
Sbjct: 4 KRVLSGVQPTGAIHIGNWLGAIRNWVSLQNE-YDTYVCVVDLHAITVPHDPQQLKENTLR 62
Query: 96 MAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPT 155
AA +ACG+DP+K +F QS + H++L W+L C+ +N + M + EK +KQ
Sbjct: 63 TAALYVACGMDPKKCSIFVQSHISAHSELCWLLNCVTPLNWMERMIQFKEKA--IKQGDN 120
Query: 156 ---GLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQ-LFNNKFDK----IFPIP 207
GL YPVL AADILLY A +P G DQ ++ LA + Q N++F+K I IP
Sbjct: 121 VSIGLLDYPVLMAADILLYDADLVPVGEDQKQHLELARDIAQQRVNSRFNKESKSILKIP 180
Query: 208 QLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYD 267
+ L E GK+ SL D + KMSKSD + NS+I + D PE+I +K K+A TD + +D
Sbjct: 181 KPLIMKE-GGKIMSLIDGNMKMSKSDPNENSRIALLDSPEIIKKKIKRAKTDSFLGLEFD 239
Query: 268 PENRPAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLM 327
RP +NL+ ++++ +NQ + + + ++ G++K +L D ++E PI+ + L+
Sbjct: 240 NNQRPEANNLLGIYSMVSNQNREAVQKEFSNIGWGKFKPILTDAIIESLNPIQQKYYSLI 299
Query: 328 KSKEHLEKVLLDGSIRAQAIAVETWDEVKSA 358
K K L +L G I+A I+ +T V++A
Sbjct: 300 KDKTELNNILNKGYIKANTISNQTLKRVRNA 330
>sp|Q71XG7|SYW_LISMF Tryptophan--tRNA ligase OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=trpS PE=3 SV=1
Length = 331
Score = 228 bits (581), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 123/321 (38%), Positives = 189/321 (58%), Gaps = 3/321 (0%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
IFSGIQP+G L LGNY GA++ + Q++ E +CIVD H+IT+ Q L+E + +A
Sbjct: 5 IFSGIQPSGQLTLGNYIGALKQFGQFQDEYE-CFYCIVDEHAITVPQDRLKLREQTRSLA 63
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGL 157
A LA G+DP+K+ LF QS+V H Q AW+L C + L M + +K GL
Sbjct: 64 ALYLAVGLDPEKATLFIQSEVAAHAQAAWILQCNVYIGELERMTQFKDKSDGKAGVSAGL 123
Query: 158 FLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAG 217
YP L AADILLY+ +P G DQ +I L L + FN K IF +P++ + A
Sbjct: 124 LTYPPLMAADILLYQTDLVPVGEDQKQHIELTRDLAERFNKKHADIFTMPEVFIPKQGA- 182
Query: 218 KVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSNL 277
+V SL+DP+KKMSKSD + + I + DPP I +K K A+TD + + Y+ E +P VSNL
Sbjct: 183 RVMSLQDPTKKMSKSDANLKNAIFLLDPPATIRKKIKSAVTDSSGIIEYNKEEKPGVSNL 242
Query: 278 ITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVL 337
+T++++ T + I + G +K LA+++V + +PI++ +KS E L+ +L
Sbjct: 243 LTIYSVITGETISTIEEKYVGKGYGDFKTDLAELVVAELEPIQERYYAYLKS-EELDTIL 301
Query: 338 LDGSIRAQAIAVETWDEVKSA 358
G+ +A +A +T ++++
Sbjct: 302 DAGAEKAARVANKTLKKMENG 322
>sp|P67590|SYW_MYCTU Tryptophan--tRNA ligase OS=Mycobacterium tuberculosis GN=trpS PE=3
SV=1
Length = 336
Score = 228 bits (581), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 127/323 (39%), Positives = 176/323 (54%), Gaps = 5/323 (1%)
Query: 36 QRIFSGIQPTG-TLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQ 94
+RIFSG+QPT +LHLGN GAV W LQ+ D FC+VDLH+ITI Q + L+
Sbjct: 8 RRIFSGVQPTSDSLHLGNALGAVAQWVGLQDD-HDAFFCVVDLHAITIPQDPEALRRRTL 66
Query: 95 LMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSP 154
+ AA LA GIDP ++ +F QSQVP HTQLAWVL C + + M + +K A
Sbjct: 67 ITAAQYLALGIDPGRATIFVQSQVPAHTQLAWVLGCFTGFGQASRMTQFKDKSARQGSEA 126
Query: 155 T--GLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQ 212
T GLF YPVLQAAD+L Y +P G DQ ++ LA + Q FN++F +P +L
Sbjct: 127 TTVGLFTYPVLQAADVLAYDTELVPVGEDQRQHLELARDVAQRFNSRFPGTLVVPDVLIP 186
Query: 213 DESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRP 272
+A K+ L+DP+ KMSKS I + D P + +K + A+TD + YDP+ +P
Sbjct: 187 KMTA-KIYDLQDPTSKMSKSAGTDAGLINLLDDPALSAKKIRSAVTDSERDIRYDPDVKP 245
Query: 273 AVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEH 332
VSNL+ + + T + G K A+ +VE PI+ ++ L
Sbjct: 246 GVSNLLNIQSAVTGTDIDVLVDGYAGHGYGDLKKDTAEAVVEFVNPIQARVDELTADPAE 305
Query: 333 LEKVLLDGSIRAQAIAVETWDEV 355
LE VL G+ RA +A +T V
Sbjct: 306 LEAVLAAGAQRAHDVASKTVQRV 328
>sp|P67591|SYW_MYCBO Tryptophan--tRNA ligase OS=Mycobacterium bovis (strain ATCC BAA-935
/ AF2122/97) GN=trpS PE=3 SV=1
Length = 336
Score = 228 bits (581), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 127/323 (39%), Positives = 176/323 (54%), Gaps = 5/323 (1%)
Query: 36 QRIFSGIQPTG-TLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQ 94
+RIFSG+QPT +LHLGN GAV W LQ+ D FC+VDLH+ITI Q + L+
Sbjct: 8 RRIFSGVQPTSDSLHLGNALGAVAQWVGLQDD-HDAFFCVVDLHAITIPQDPEALRRRTL 66
Query: 95 LMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSP 154
+ AA LA GIDP ++ +F QSQVP HTQLAWVL C + + M + +K A
Sbjct: 67 ITAAQYLALGIDPGRATIFVQSQVPAHTQLAWVLGCFTGFGQASRMTQFKDKSARQGSEA 126
Query: 155 T--GLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQ 212
T GLF YPVLQAAD+L Y +P G DQ ++ LA + Q FN++F +P +L
Sbjct: 127 TTVGLFTYPVLQAADVLAYDTELVPVGEDQRQHLELARDVAQRFNSRFPGTLVVPDVLIP 186
Query: 213 DESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRP 272
+A K+ L+DP+ KMSKS I + D P + +K + A+TD + YDP+ +P
Sbjct: 187 KMTA-KIYDLQDPTSKMSKSAGTDAGLINLLDDPALSAKKIRSAVTDSERDIRYDPDVKP 245
Query: 273 AVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEH 332
VSNL+ + + T + G K A+ +VE PI+ ++ L
Sbjct: 246 GVSNLLNIQSAVTGTDIDVLVDGYAGHGYGDLKKDTAEAVVEFVNPIQARVDELTADPAE 305
Query: 333 LEKVLLDGSIRAQAIAVETWDEV 355
LE VL G+ RA +A +T V
Sbjct: 306 LEAVLAAGAQRAHDVASKTVQRV 328
>sp|P67587|SYW_BRUSU Tryptophan--tRNA ligase OS=Brucella suis biovar 1 (strain 1330)
GN=trpS PE=3 SV=1
Length = 355
Score = 227 bits (579), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 124/347 (35%), Positives = 196/347 (56%), Gaps = 25/347 (7%)
Query: 33 SFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKEN 92
+F +FSG+QPTG LHLGNY GA++ W +Q K E+ I+C+VD+H++T+ +L ++
Sbjct: 3 TFKPLVFSGVQPTGNLHLGNYLGAIKRWVEVQ-KTEECIYCVVDMHALTVSPDPVELMQS 61
Query: 93 IQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQ 152
+ + A+ LA GIDP+KSI+F QS+V +H +LAWV C+ + ++ M + +K + ++
Sbjct: 62 TREVTAAFLAAGIDPKKSIVFNQSRVMQHAELAWVFNCVARIGWMSRMTQFKDKAGKDRE 121
Query: 153 SPT-GLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKF-DKI------- 203
+ + GLF YP L AADILLY+AT +P G DQ ++ L + Q FNN + D+I
Sbjct: 122 NASLGLFAYPSLMAADILLYRATAVPVGEDQKQHLELTRDIAQKFNNDYSDRIASLGVGV 181
Query: 204 ------------FPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVR 251
FP+ + + A ++ SL+D +KKMSKSD S+I + D + I +
Sbjct: 182 DMKVGDEQVSGFFPLTEPMISG-PAMRIMSLRDGTKKMSKSDPSDLSRINLIDDEDTITK 240
Query: 252 KCKKALTDCTS--AVTYDPENRPAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLA 309
K +KA TD + E RP NL+ ++A ++ +D+ + K LA
Sbjct: 241 KIRKAKTDSDGLPSEVDGLEGRPEADNLVGIYAALSSTTKEDVLKEFGGRQFSDLKASLA 300
Query: 310 DVLVEKFKPIRDEIEYLMKSKEHLEKVLLDGSIRAQAIAVETWDEVK 356
D+ V + PI E+ L+ H++ VL DG +A AIA +T V+
Sbjct: 301 DLAVARLSPITHEMRRLVADPAHIDSVLRDGGEQAGAIAEQTMRHVR 347
>sp|P67586|SYW_BRUME Tryptophan--tRNA ligase OS=Brucella melitensis biotype 1 (strain
16M / ATCC 23456 / NCTC 10094) GN=trpS PE=3 SV=1
Length = 355
Score = 227 bits (579), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 124/347 (35%), Positives = 196/347 (56%), Gaps = 25/347 (7%)
Query: 33 SFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKEN 92
+F +FSG+QPTG LHLGNY GA++ W +Q K E+ I+C+VD+H++T+ +L ++
Sbjct: 3 TFKPLVFSGVQPTGNLHLGNYLGAIKRWVEVQ-KTEECIYCVVDMHALTVSPDPVELMQS 61
Query: 93 IQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQ 152
+ + A+ LA GIDP+KSI+F QS+V +H +LAWV C+ + ++ M + +K + ++
Sbjct: 62 TREVTAAFLAAGIDPKKSIVFNQSRVMQHAELAWVFNCVARIGWMSRMTQFKDKAGKDRE 121
Query: 153 SPT-GLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKF-DKI------- 203
+ + GLF YP L AADILLY+AT +P G DQ ++ L + Q FNN + D+I
Sbjct: 122 NASLGLFAYPSLMAADILLYRATAVPVGEDQKQHLELTRDIAQKFNNDYSDRIASLGVGV 181
Query: 204 ------------FPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVR 251
FP+ + + A ++ SL+D +KKMSKSD S+I + D + I +
Sbjct: 182 DMKVGDEQVSGFFPLTEPMISG-PAMRIMSLRDGTKKMSKSDPSDLSRINLIDDEDTITK 240
Query: 252 KCKKALTDCTS--AVTYDPENRPAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLA 309
K +KA TD + E RP NL+ ++A ++ +D+ + K LA
Sbjct: 241 KIRKAKTDSDGLPSEVDGLEGRPEADNLVGIYAALSSTTKEDVLKEFGGRQFSDLKASLA 300
Query: 310 DVLVEKFKPIRDEIEYLMKSKEHLEKVLLDGSIRAQAIAVETWDEVK 356
D+ V + PI E+ L+ H++ VL DG +A AIA +T V+
Sbjct: 301 DLAVARLSPITHEMRRLVADPAHIDSVLRDGGEQAGAIAEQTMRHVR 347
>sp|P56396|SYW_HELPY Tryptophan--tRNA ligase OS=Helicobacter pylori (strain ATCC 700392
/ 26695) GN=trpS PE=3 SV=2
Length = 326
Score = 227 bits (578), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 122/323 (37%), Positives = 195/323 (60%), Gaps = 6/323 (1%)
Query: 36 QRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQL 95
+R+FSGIQPTG +HLGNY GA++ W +Q++ E+ +FC+V+ H+IT+ LK
Sbjct: 4 KRVFSGIQPTGQIHLGNYLGAIKHWVEMQDEYEN-LFCVVNSHAITLPIDPAFLKSQSYE 62
Query: 96 MAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQS-P 154
+ LLACGIDP++S LF QS+V EH LAW+L C ++ + M + +K + +S
Sbjct: 63 LVKLLLACGIDPKQSGLFIQSEVDEHPALAWLLNCQVSMGEMQRMTQFKDKSLKNPKSVN 122
Query: 155 TGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDE 214
GLF YP+L A+DILLY++ +P G DQ ++ L ++ + FN F F +P+ L
Sbjct: 123 VGLFNYPILMASDILLYQSDLVPVGEDQKQHLELTRNIAEKFNRDFGNCFKVPEPLIAKV 182
Query: 215 SAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAV 274
A +V L DP KMSKS +N I + D P++IV+K KKA TD + +D E R +
Sbjct: 183 GA-RVMGLDDPKVKMSKSHQGANHAIFLLDEPDIIVKKIKKAATDSMGVIAFD-EKREGI 240
Query: 275 SNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLE 334
NL+ ++ L +N+ P++I + K+ G +K LA+V+++ KPI++ Y S + ++
Sbjct: 241 FNLLNIYMLLSNESPENIEERFKNKGYGDFKKELAEVMIQALKPIQE--RYKEISDDEVK 298
Query: 335 KVLLDGSIRAQAIAVETWDEVKS 357
+L G+ +A+ +A T+ + K
Sbjct: 299 AILNGGAEKARPLARATYQKAKE 321
>sp|Q891C7|SYW_CLOTE Tryptophan--tRNA ligase OS=Clostridium tetani (strain Massachusetts
/ E88) GN=trpS PE=3 SV=1
Length = 338
Score = 226 bits (576), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 119/321 (37%), Positives = 191/321 (59%), Gaps = 6/321 (1%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
IFSGIQP+G L +GNYFGA++ W LQ++ + +CIVDLH+IT++Q ++L++ +
Sbjct: 13 IFSGIQPSGNLTIGNYFGALKNWVKLQDE-YNCFYCIVDLHAITVRQVPQELRKRTLEVL 71
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQS-PTG 156
A +A G+DP+K+ LF QS VP HT+ AW+L C + LN M + +K +S G
Sbjct: 72 AVYIASGLDPEKNTLFIQSHVPAHTEAAWLLNCFTYLGELNRMTQFKDKSQNAGESISAG 131
Query: 157 LFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQ-DES 215
L YPVL AADILLY A +P G DQ ++ L + FNN + F +P+ P ++
Sbjct: 132 LLNYPVLMAADILLYNADLVPVGNDQKQHLELTRDIATRFNNLYSPTFKVPE--PYIGKT 189
Query: 216 AGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVS 275
++ L++P KKMSKS + N I I DPP +I K +A+TD V Y E +P V
Sbjct: 190 GARIMDLQEPKKKMSKSAENKNGYILIMDPPNIIQNKINRAVTDNEGIVRYSDE-QPGVK 248
Query: 276 NLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEK 335
NL+ + + T + + I + L ++K +A+ ++ + +P++ E++ ++ K +LEK
Sbjct: 249 NLMNILSTATGKNVESIEKEYAGLGYSKFKKDVAEAIIAEVEPLQKEVKRYLEDKSYLEK 308
Query: 336 VLLDGSIRAQAIAVETWDEVK 356
V +G+ +A +A +T ++K
Sbjct: 309 VYKEGAQKASYVANKTLSKMK 329
>sp|Q9KZA7|SYW2_STRCO Tryptophan--tRNA ligase 2 OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=trpS2 PE=3 SV=1
Length = 339
Score = 225 bits (574), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 127/326 (38%), Positives = 186/326 (57%), Gaps = 9/326 (2%)
Query: 37 RIFSGIQPT-GTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQL 95
R+ SGIQPT G+ HLGNY GAV+ W +Q+ D + +VDLH+IT+ Q K+L+EN ++
Sbjct: 9 RVLSGIQPTSGSFHLGNYLGAVRQWVDMQDT-HDAFYMVVDLHAITVPQDPKELRENTRV 67
Query: 96 MAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPT 155
AA LLA G+DP + LF QS VPEH QL W++ C+ + M + +K A+ T
Sbjct: 68 AAAQLLAAGLDPDRCTLFVQSHVPEHAQLGWLMNCITGFGEASRMTQFKDKSAKQGNDRT 127
Query: 156 --GLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQD 213
GLF YP+L ADILLY+A +P G DQ ++ L L FN + F +P
Sbjct: 128 TVGLFTYPMLMVADILLYQADQVPVGEDQRQHLELTRDLADRFNQTYGDAFTVPTAYILK 187
Query: 214 ESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPA 273
E+A K+ L+DP+ KMSKS I + D P+ +K K A+TD + V +D E +P
Sbjct: 188 ETA-KIYDLQDPTAKMSKSAATPKGLINLLDEPKATAKKVKSAVTDTDTVVRFDRETKPG 246
Query: 274 VSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHL 333
VSNL+T+++ T ++ + + G K LADV+VE P R+ + E L
Sbjct: 247 VSNLLTIYSTLTGAEIAELERKYEGKGYGALKTDLADVVVEFVTPFRERTRQYLDDPETL 306
Query: 334 EKVLLDGSIRAQAIAVET----WDEV 355
+ +L G+ +A+++A ET +DEV
Sbjct: 307 DAILAKGAEKARSVAAETLARAYDEV 332
>sp|P73655|SYW_SYNY3 Tryptophan--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=trpS PE=3 SV=2
Length = 337
Score = 225 bits (574), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 190/327 (58%), Gaps = 7/327 (2%)
Query: 37 RIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLM 96
RI SG+QPTG LHLGNY GA+++W Q + D FC+VDLH+IT+ + L ++ +
Sbjct: 5 RILSGVQPTGNLHLGNYLGAIRSWVE-QQQHYDNFFCVVDLHAITVPHNPQTLAQDTLTI 63
Query: 97 AASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQS-PT 155
AA LACGID Q S +F QS V H++LAW+L C+ +N L M + EK + ++
Sbjct: 64 AALYLACGIDLQYSTIFVQSHVAAHSELAWLLNCVTPLNWLERMIQFKEKAVKQGENVSV 123
Query: 156 GLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDK----IFPIPQLLP 211
GL YPVL AADILLY A +P G DQ ++ L + N+KF + + +P+ L
Sbjct: 124 GLLDYPVLMAADILLYDADKVPVGEDQKQHLELTRDIVIRINDKFGREDAPVLKLPEPLI 183
Query: 212 QDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENR 271
+ E A +V SL D +KKMSKSD S+I + DPPE+I +K KK TD + +D R
Sbjct: 184 RKEGA-RVMSLADGTKKMSKSDESELSRINLLDPPEMIKKKVKKCKTDPQRGLWFDDPER 242
Query: 272 PAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKE 331
P NL+TL+ L +NQ + + + + GQ+K LL + + +PI+ + ++ +
Sbjct: 243 PECHNLLTLYTLLSNQTKEAVAQECAEMGWGQFKPLLTETAIAALEPIQAKYAEILADRG 302
Query: 332 HLEKVLLDGSIRAQAIAVETWDEVKSA 358
L++++ G+ +A A +T V+ A
Sbjct: 303 ELDRIIQAGNAKASQTAQQTLARVRDA 329
>sp|Q7VPB2|SYW_HAEDU Tryptophan--tRNA ligase OS=Haemophilus ducreyi (strain 35000HP /
ATCC 700724) GN=trpS PE=3 SV=1
Length = 342
Score = 225 bits (573), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 122/331 (36%), Positives = 193/331 (58%), Gaps = 15/331 (4%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
+FSG+QP+G L +GNY GA++ W LQ+ D +FCIVDLH+IT++Q L+++ +
Sbjct: 6 VFSGVQPSGELTIGNYLGALRNWVTLQDD-YDCLFCIVDLHAITVRQDPIALRKSTLDVL 64
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQS-PTG 156
A LACGIDP KS +F QSQVPEH+QLAWVL C + M + +K A +++ G
Sbjct: 65 ALYLACGIDPNKSTIFIQSQVPEHSQLAWVLNCYTYFGEMGRMTQFKDKSARYEENVNVG 124
Query: 157 LFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDK----------IFPI 206
LF YPVL AADILLY+A +P G DQ ++ + + FN + K +F +
Sbjct: 125 LFTYPVLMAADILLYQANQVPVGDDQKQHLEITRDIANRFNTLYGKKDAEGKLIESVFTV 184
Query: 207 PQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTS--AV 264
P+ ++ +V SL +P+KKMSKSD + N+ I + + P+ + +K K+A+TD +
Sbjct: 185 PECFIA-KACARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKAVAKKIKRAMTDSDEPPVI 243
Query: 265 TYDPENRPAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIE 324
YD +N+ VSNL+ + A T + ++ + + G K +AD ++ +++ +
Sbjct: 244 KYDQKNKAGVSNLLDILAAITGKSMVELEAEFEGKMYGHLKTEVADQVMAMLTGLQERYQ 303
Query: 325 YLMKSKEHLEKVLLDGSIRAQAIAVETWDEV 355
+ + LEK+ DG+ +A+ A +T DEV
Sbjct: 304 RFRQDEALLEKIYRDGAEKARMRAKKTLDEV 334
>sp|Q68WR2|SYW_RICTY Tryptophan--tRNA ligase OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=trpS PE=3 SV=1
Length = 330
Score = 224 bits (572), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 120/321 (37%), Positives = 194/321 (60%), Gaps = 4/321 (1%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
+ SG+Q TG LHLGNY G+++ W +Q + + F + DLH+ITI K +L +I +
Sbjct: 5 VLSGVQTTGALHLGNYLGSIKNWVKMQEE-YNCFFFLADLHAITIDIKTSELNNSIMEVL 63
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELK-QSPTG 156
A LA G++P K +F QS V EH +L+W+L C+ + L M + +K + ++ G
Sbjct: 64 AIYLAAGLNPDKVTIFAQSMVKEHAELSWLLNCVTPLGWLKRMTQFKDKAGSDQCKACLG 123
Query: 157 LFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDK-IFPIPQLLPQDES 215
LF YP+L AADIL+YKA +P G DQ ++ L + ++ N +FDK I +P +L E+
Sbjct: 124 LFAYPILMAADILIYKADIVPVGEDQKQHLELTRDIAEVINRRFDKEILKVPDILIS-ET 182
Query: 216 AGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVS 275
++ SL++ KKMSKSD+ S+I + D ++I +K KKA TD S ++YD + RP +S
Sbjct: 183 GTRIMSLRNGLKKMSKSDIADFSRINLKDSNDLIYQKIKKAKTDHLSFISYDKKTRPEIS 242
Query: 276 NLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEK 335
NL+ ++ + + + I ++ ++K LA++++ +PIRD+ LM KE+L K
Sbjct: 243 NLLDIYKSLSKESMEKIINNYQNQGFAKFKEDLAEIIITNLQPIRDKCLELMNDKEYLLK 302
Query: 336 VLLDGSIRAQAIAVETWDEVK 356
+L G+ +A+ A ET +EVK
Sbjct: 303 ILHKGAEKAKIRASETVNEVK 323
>sp|Q7NA61|SYW_PHOLL Tryptophan--tRNA ligase OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=trpS PE=3 SV=1
Length = 345
Score = 224 bits (571), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 124/330 (37%), Positives = 191/330 (57%), Gaps = 8/330 (2%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
+FSG QP+G L +GNY GA++ W +Q+ D I+CIVD H+IT++Q K+L++
Sbjct: 17 VFSGAQPSGELTIGNYMGALRQWVKMQDD-YDCIYCIVDQHAITVRQDPKELRKRTLDTL 75
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQS-PTG 156
A LACGIDP+KS +F QS VP+H QL+W+L C L+ M + +K A ++ G
Sbjct: 76 ALYLACGIDPEKSTIFVQSHVPQHAQLSWILNCYTYFGELSRMTQFKDKSARHAENINAG 135
Query: 157 LFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQ-LLPQDES 215
LF YPVL ADIL+Y+ +P G+DQ ++ L+ + Q FN + IF +P+ +P
Sbjct: 136 LFDYPVLMTADILVYQTNQVPVGIDQKQHLELSRDIAQRFNAIYGNIFAVPEPFIPT--G 193
Query: 216 AGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTS--AVTYDPENRPA 273
+V +L+DP KKMSKSD + N+ I + + P+ +K K+A+TD V YD E +P
Sbjct: 194 GARVMALQDPEKKMSKSDDNRNNVIALLEDPKSAAKKIKRAVTDSEEPPRVRYDLEQKPG 253
Query: 274 VSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHL 333
VSNL+ L A T + ++ + + G K +AD + +++ Y + L
Sbjct: 254 VSNLLDLLAGVTGKTIPELEAEFEGQMYGHLKSAVADAVSGMLTELQERFHYFRNDEILL 313
Query: 334 EKVLLDGSIRAQAIAVETWDEVKSAAVGGI 363
K++ +G+ +A+A A T D+V AVG I
Sbjct: 314 NKIMAEGAAKAKARAQITLDKVYE-AVGFI 342
>sp|Q86A90|SYWM_DICDI Tryptophan--tRNA ligase, mitochondrial OS=Dictyostelium discoideum
GN=wars2 PE=3 SV=1
Length = 377
Score = 224 bits (571), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 129/356 (36%), Positives = 199/356 (55%), Gaps = 38/356 (10%)
Query: 38 IFSGIQPTGT-LHLGNYFGAVQTWSALQ-------------------------------N 65
+FSG+QPT + LHLGNY GA+ W +Q N
Sbjct: 16 VFSGMQPTSSALHLGNYLGAMGNWLKIQDLVTKNNKEEEELLNLSESSSSSSSSQSTKIN 75
Query: 66 KGEDVIFCIVDLHSITIKQ--KHKDLKENIQLMAASLLACGIDPQKSILFQQSQVPEHTQ 123
+ +IF IVDLHS+T + K+L+ N +A + LACGIDP+K ILF QS VP H++
Sbjct: 76 EKHKLIFSIVDLHSLTSTKSLSPKELQSNTISVAINYLACGIDPEKVILFNQSMVPAHSE 135
Query: 124 LAWVLTCLCTVNRLNHMPTYVEKCAELKQS--PTGLFLYPVLQAADILLYKATHIPAGLD 181
L W+L C+ + ++L++M + EK ++ GL YPVL AADILLYKATH+P G D
Sbjct: 136 LTWILNCITSFSKLSNMIQFKEKTKSSNEASVSNGLLSYPVLMAADILLYKATHVPVGED 195
Query: 182 QIHNINLANHLTQLFNNKF-DKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKI 240
Q ++ + Q F++ F K FP P ++ ++S ++ SL+D KMSKSD S+I
Sbjct: 196 QTQHLEFTRDIAQAFHSNFKSKFFPYPSIITSEQSK-RIMSLQDGRLKMSKSDPLEISRI 254
Query: 241 EITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSNLITLHALCTNQLPQDICTQVKHLN 300
+TD + I K KK+ TD +TYDP NRP +SNL+++ + + D+ ++ K +
Sbjct: 255 SLTDTDDQIKLKIKKSKTDTIIGITYDPINRPDISNLLSIASETSGIPITDLQSEFKDKS 314
Query: 301 TGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVLLDGSIRAQAIAVETWDEVK 356
+K L++ +++ PIR++I Y + + + +LL GS +A IA + + +K
Sbjct: 315 NAIFKEFLSNSIIKNISPIREKINYYQSNPKLVRDILLQGSEKANKIANKNLNIIK 370
>sp|Q8ZJF2|SYW_YERPE Tryptophan--tRNA ligase OS=Yersinia pestis GN=trpS PE=1 SV=2
Length = 342
Score = 224 bits (571), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 190/325 (58%), Gaps = 7/325 (2%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
+FSG QP+G L +GNY GA++ W +Q+ D I+CIVDLH+IT +Q L++
Sbjct: 14 VFSGAQPSGELTIGNYMGALRQWVQMQDD-YDCIYCIVDLHAITARQDPALLRKRTLDTL 72
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQS-PTG 156
A LACGIDP+KS +F QS VPEH+QL+W L C L+ M + +K A ++ G
Sbjct: 73 ALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMTQFKDKSARYAENINAG 132
Query: 157 LFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQ-LLPQDES 215
LF YPVL AADILLY+ +P G DQ ++ L+ + FNN + IF IP+ +P+ +
Sbjct: 133 LFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNLYGDIFKIPEPFIPK--A 190
Query: 216 AGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCT--SAVTYDPENRPA 273
+V SL+DP+KKMSKSD + N+ IE+ + P+ +V+K K+A+TD + + YD E +
Sbjct: 191 GARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRAMTDSDEPALIRYDVEKKAG 250
Query: 274 VSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHL 333
VSNL+ + + T Q ++ Q G K +AD + +++ + + L
Sbjct: 251 VSNLLDILSGVTGQSIPELEAQFTGQMYGHLKGAVADAVSGMLSELQERYRTYREDEALL 310
Query: 334 EKVLLDGSIRAQAIAVETWDEVKSA 358
+ V+ +G+ +A+A A T +V A
Sbjct: 311 QDVMREGAAKARARAQVTLAKVYEA 335
>sp|Q929H5|SYW_LISIN Tryptophan--tRNA ligase OS=Listeria innocua serovar 6a (strain CLIP
11262) GN=trpS PE=3 SV=1
Length = 331
Score = 224 bits (571), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/321 (37%), Positives = 189/321 (58%), Gaps = 3/321 (0%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
IFSGIQP+G L LGNY GA++ + Q++ E +CIVD H+IT+ Q L+E + +A
Sbjct: 5 IFSGIQPSGQLTLGNYIGALKQFGQFQDEYE-CFYCIVDEHAITVPQDRLKLREQTRSLA 63
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGL 157
A LA G+DP+K+ LF QS+V H Q AW+L C + L M + +K GL
Sbjct: 64 ALYLAVGLDPEKATLFIQSEVAAHAQAAWILQCNVYIGELERMTQFKDKSDGKAGVSAGL 123
Query: 158 FLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAG 217
YP L AADILLY+ +P G DQ +I L L + FN K IF +P++ + A
Sbjct: 124 LTYPPLMAADILLYQTNLVPVGEDQKQHIELTRDLAERFNKKHADIFTMPEVFIPKQGA- 182
Query: 218 KVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSNL 277
+V SL+DP+KKMSKSD + + I + DPP I +K K A+TD + + Y+ E +P VSNL
Sbjct: 183 RVMSLQDPTKKMSKSDANLKNAIFLLDPPATIRKKIKSAVTDSSGIIEYNKEEKPGVSNL 242
Query: 278 ITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVL 337
+T++++ T + +I + G +K LA+++V + + I++ ++S E L+ +L
Sbjct: 243 LTIYSVITGETIANIEEKYVGKGYGDFKTDLAELVVAELEQIQERYYAYLES-EELDNIL 301
Query: 338 LDGSIRAQAIAVETWDEVKSA 358
G+ +A +A +T ++++
Sbjct: 302 DAGAEKAARVANKTLKKMENG 322
>sp|P43835|SYW_HAEIN Tryptophan--tRNA ligase OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=trpS PE=3 SV=1
Length = 334
Score = 223 bits (568), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/324 (37%), Positives = 188/324 (58%), Gaps = 5/324 (1%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
+FSG+QP+G L +GNY GA++ W +Q E IFC+VDLH+IT++Q L++ +
Sbjct: 6 VFSGVQPSGELTIGNYLGALRNWVKMQEDYE-CIFCVVDLHAITVRQDPVALRKATLDVL 64
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQS-PTG 156
A LACGIDP KS +F QS VPEHTQL+WVL C ++ M + +K A ++ G
Sbjct: 65 ALYLACGIDPNKSTIFVQSHVPEHTQLSWVLNCYTYFGEMSRMTQFKDKSARYAENINVG 124
Query: 157 LFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESA 216
LF YPVL AADILLY+A +P G DQ ++ + + FN + IF IP++ ++
Sbjct: 125 LFDYPVLMAADILLYQAKSVPVGDDQKQHLEITRDIANRFNALYGNIFTIPEIFI-GKAG 183
Query: 217 GKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTS--AVTYDPENRPAV 274
++ SL+DP KKMSKSD + N+ + + + P+ + +K K+A+TD V YD +N+ V
Sbjct: 184 ARIMSLQDPEKKMSKSDDNRNNVVTLLEDPKSVAKKIKRAVTDSDEPPVVRYDVQNKAGV 243
Query: 275 SNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLE 334
SNL+ + + T++ D+ + + G K +AD + +++ + L+
Sbjct: 244 SNLLDILSAVTDKPIADLEKEFEGKMYGHLKTAVADEVSTLLASLQERFHQYRNDETLLD 303
Query: 335 KVLLDGSIRAQAIAVETWDEVKSA 358
+L G+ +A+A A ET +V A
Sbjct: 304 NILRQGAEKARAKAQETLAKVYEA 327
>sp|Q9ZJX4|SYW_HELPJ Tryptophan--tRNA ligase OS=Helicobacter pylori (strain J99) GN=trpS
PE=3 SV=1
Length = 326
Score = 222 bits (565), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 123/323 (38%), Positives = 195/323 (60%), Gaps = 6/323 (1%)
Query: 36 QRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQL 95
+R+FSGIQPTG +HLGNY GA++ W LQ++ E+ +FCIV+ H+IT+ + LK
Sbjct: 4 KRVFSGIQPTGQIHLGNYLGAIKHWVELQDEYEN-LFCIVNSHAITLPIEPIFLKSQTYE 62
Query: 96 MAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQS-P 154
+ LLACGI P++S LF QS+V EH LAW+L C ++ + M + +K + +S
Sbjct: 63 LVKLLLACGISPKQSGLFIQSEVDEHPALAWLLDCQVSMGEMQRMTQFKDKSLKNPKSVN 122
Query: 155 TGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDE 214
GLF YP+L A+DILLY++ +P G DQ ++ L ++ + FN F F +P+ L
Sbjct: 123 VGLFNYPILMASDILLYQSDLVPVGEDQKQHLELTRNVAEKFNRDFGNCFKVPEPLIAKV 182
Query: 215 SAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAV 274
A +V L DP KMSKS +N I + D P+VIV+K KKA TD + +D E R V
Sbjct: 183 GA-RVMGLDDPKVKMSKSHKGANHAIFLLDEPDVIVKKIKKAATDSMGVIAFD-ETREGV 240
Query: 275 SNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLE 334
NL+ ++ L +++ P+ I + ++ G +K LA+V+++ KPI++ + + S + ++
Sbjct: 241 FNLLNIYMLLSDESPEKIEERFRNKGYGDFKKELAEVVIQSLKPIQERYQEI--SDDEVK 298
Query: 335 KVLLDGSIRAQAIAVETWDEVKS 357
VL G+ +A+ +A T+ + K
Sbjct: 299 AVLNCGAEKARPLARATYQKAKE 321
>sp|Q9KNV7|SYW_VIBCH Tryptophan--tRNA ligase OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=trpS PE=1 SV=2
Length = 338
Score = 220 bits (561), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 127/332 (38%), Positives = 193/332 (58%), Gaps = 12/332 (3%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
+ SG+QP+G L +GNY GA++ W +Q+ D +C+VDLH+IT++Q + L E
Sbjct: 6 VLSGVQPSGELSIGNYLGALRQWQQMQDD-YDCQYCVVDLHAITVRQDPQALHEATLDAL 64
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQS-PTG 156
A LA G+DP+KS LF QS VPEH QL WVL C + L+ M + +K A G
Sbjct: 65 AICLAVGVDPKKSTLFVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYANDVNAG 124
Query: 157 LFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFD---KIFPIPQ-LLPQ 212
LF YPVL AADILLY A +P G DQ ++ LA + FNN + IF IP+ +P
Sbjct: 125 LFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPT 184
Query: 213 DESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSA--VTYDPEN 270
+ +V SL+D +KKMSKSD + + I + + P+ I++K KA TD + + YD EN
Sbjct: 185 VNA--RVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINKAQTDAETPPRIAYDVEN 242
Query: 271 RPAVSNLITLHALCTNQLPQDICTQVKHLNT-GQYKLLLADVLVEKFKPIRDEIEYLMKS 329
+ ++NL+ L++ T + +I Q + G +K + + +V +P++ E + +
Sbjct: 243 KAGIANLMGLYSAATGKTFAEIEAQYAGVEMYGPFKKDVGEAVVAMLEPVQAEYQRIRND 302
Query: 330 KEHLEKVLLDGSIRAQAIAVETWDEVKSAAVG 361
+E+L V+ DG+ +A A A++T +V AAVG
Sbjct: 303 REYLNSVMRDGAEKASAKALQTLKKV-YAAVG 333
>sp|Q9ZD76|SYW_RICPR Tryptophan--tRNA ligase OS=Rickettsia prowazekii (strain Madrid E)
GN=trpS PE=3 SV=1
Length = 330
Score = 220 bits (561), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 194/321 (60%), Gaps = 4/321 (1%)
Query: 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMA 97
+ SG+Q TG LHLGNY G+++ W +Q + + F + DLH+ITI K +L + I +
Sbjct: 5 VLSGVQTTGALHLGNYLGSIRNWIKMQEE-YNCFFFLADLHAITIDIKTSELNDAIMEVL 63
Query: 98 ASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELK-QSPTG 156
A LA G++P K +F QS V EH +L+W+L C+ + L M + +K + ++ G
Sbjct: 64 AIYLAAGLNPDKVTIFAQSMVKEHVELSWLLNCVTPLGWLKRMTQFKDKAGSAQCKACLG 123
Query: 157 LFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDK-IFPIPQLLPQDES 215
LF YP+L AADIL+YKA +P G DQ ++ L + ++ N +FDK I +P +L E+
Sbjct: 124 LFAYPILMAADILIYKADIVPVGEDQKQHLELTRDIAEVINRRFDKEILKVPDILIS-ET 182
Query: 216 AGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVS 275
++ SL++ KKMSKSD+ S+I + D ++I +K KKA TD S ++Y+ + RP +S
Sbjct: 183 GTRIMSLRNGLKKMSKSDISDFSRINLKDSNDLIHQKIKKAKTDHLSFISYNKKTRPEIS 242
Query: 276 NLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEK 335
NL+ ++ + + + I ++ ++K LA++++ +PIR++ LM KE+L K
Sbjct: 243 NLLDIYKSFSKESIEKIIDNYQNQGFAKFKEDLAEIIITNLQPIRNKCLELMNDKEYLLK 302
Query: 336 VLLDGSIRAQAIAVETWDEVK 356
+L G+ +A+ A ET +EVK
Sbjct: 303 ILHKGAQKARIRASETVNEVK 323
>sp|Q9AC05|SYW_CAUCR Tryptophan--tRNA ligase OS=Caulobacter crescentus (strain ATCC
19089 / CB15) GN=trpS PE=3 SV=1
Length = 344
Score = 220 bits (560), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 184/327 (56%), Gaps = 7/327 (2%)
Query: 35 PQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQ 94
P R+ SG+QP+G LHLGNY GA+ ++ LQ++ + IF + DLH+IT+ Q L + +
Sbjct: 12 PPRVLSGVQPSGALHLGNYLGALVKFTRLQHEIDTFIF-VADLHAITVWQDPAALAQQTR 70
Query: 95 LMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQ-S 153
+AA+ +A G+DP K+ +F QS V EH +L+W+ C+ + L+ M + EK + K+ S
Sbjct: 71 EIAAAYIASGLDPDKATIFPQSAVREHAELSWIFNCVARLGWLDRMTQFKEKSGKHKERS 130
Query: 154 PTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDK--IFPIPQLLP 211
GL+ YPVLQAADIL+YKATH+P G DQ ++ L + Q FN+ F+ FP+P L
Sbjct: 131 SVGLYTYPVLQAADILIYKATHVPVGEDQKQHLELTRDIAQKFNHDFNAPGFFPLPDPLI 190
Query: 212 QDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPE-- 269
Q A +V SL+D S KMSKSD S+I +TD + I K KKA TD E
Sbjct: 191 QGPGA-RVMSLRDGSAKMSKSDPSDYSRINLTDTADDIAAKVKKARTDPEPLPETIEELA 249
Query: 270 NRPAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKS 329
R NL+ + A + ++ G +K LA++ VE P+ + + L+
Sbjct: 250 TRAEADNLVGIFAALAGKTKAEVLADYAGKGFGTFKPALAELAVESLAPVGERMRGLLGD 309
Query: 330 KEHLEKVLLDGSIRAQAIAVETWDEVK 356
L+ +L G+ +A+ A T EVK
Sbjct: 310 PAVLDAILAKGAEKAREAAAPTLAEVK 336
>sp|Q6AGQ7|SYW_LEIXX Tryptophan--tRNA ligase OS=Leifsonia xyli subsp. xyli (strain
CTCB07) GN=trpS PE=3 SV=1
Length = 337
Score = 220 bits (560), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 174/311 (55%), Gaps = 5/311 (1%)
Query: 37 RIFSGIQPTG-TLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQL 95
R++SG+QP+ +LHLGNY GA+ W LQ D F +VDLH+IT+ Q DL+E +
Sbjct: 6 RLYSGMQPSADSLHLGNYVGALLQWKELQ-AAHDAFFSVVDLHAITVAQDPHDLREKTRR 64
Query: 96 MAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPT 155
AA +A GIDP S L+ QS VP H QLAWVL+ + M + +K A+ T
Sbjct: 65 TAAQYIAAGIDPSVSTLYVQSHVPAHAQLAWVLSTITGYGEAARMTQFKDKSAKQGAEAT 124
Query: 156 --GLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQD 213
GLF YPVL AADILL+ A +P G DQ ++ L L + FN++F + F +PQ +
Sbjct: 125 SVGLFTYPVLMAADILLFDADVVPVGDDQRQHVELTRDLAERFNSRFGETFVVPQAMILK 184
Query: 214 ESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPA 273
+ A ++ L+ P KMSKS + + D P++ +K +A+TD V+YD +P
Sbjct: 185 DGA-RIYDLQSPESKMSKSADSGAGIVWLLDEPDIARKKIMRAVTDTDGVVSYDRAGKPG 243
Query: 274 VSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHL 333
VSNL+++++ + + Q I + G +K L +V+V+ PIR+ L+ L
Sbjct: 244 VSNLLSIYSALSGRAIQQIELDYEGKGYGDFKKGLVEVVVDALGPIRERTLELLADPAEL 303
Query: 334 EKVLLDGSIRA 344
+++L + RA
Sbjct: 304 DRILAGNAARA 314
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,930,568
Number of Sequences: 539616
Number of extensions: 6742007
Number of successful extensions: 18812
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 164
Number of HSP's that attempted gapping in prelim test: 18188
Number of HSP's gapped (non-prelim): 322
length of query: 422
length of database: 191,569,459
effective HSP length: 120
effective length of query: 302
effective length of database: 126,815,539
effective search space: 38298292778
effective search space used: 38298292778
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)