Query psy3680
Match_columns 422
No_of_seqs 219 out of 1746
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 22:51:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3680.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3680hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12284 tryptophanyl-tRNA syn 100.0 1.1E-99 2E-104 772.9 34.9 355 35-398 2-369 (431)
2 KOG2713|consensus 100.0 3.8E-95 8E-100 690.6 29.2 328 34-362 12-345 (347)
3 PLN02886 aminoacyl-tRNA ligase 100.0 7.9E-92 1.7E-96 710.7 34.0 326 35-362 46-385 (389)
4 PRK00927 tryptophanyl-tRNA syn 100.0 1.5E-88 3.3E-93 681.6 33.7 325 36-362 2-331 (333)
5 PRK12556 tryptophanyl-tRNA syn 100.0 1.4E-88 3.1E-93 680.0 33.3 318 35-361 3-331 (332)
6 PRK12283 tryptophanyl-tRNA syn 100.0 3.8E-87 8.3E-92 676.0 33.5 319 35-362 2-397 (398)
7 COG0180 TrpS Tryptophanyl-tRNA 100.0 3E-86 6.5E-91 651.4 27.3 307 32-343 2-314 (314)
8 PRK12282 tryptophanyl-tRNA syn 100.0 6E-85 1.3E-89 654.4 33.5 320 35-362 2-330 (333)
9 TIGR00233 trpS tryptophanyl-tR 100.0 7.2E-84 1.6E-88 646.1 30.8 319 34-361 1-328 (328)
10 cd00806 TrpRS_core catalytic c 100.0 3.1E-73 6.7E-78 558.5 26.9 275 37-315 1-280 (280)
11 PRK12285 tryptophanyl-tRNA syn 100.0 9.7E-72 2.1E-76 564.7 27.8 310 10-339 40-364 (368)
12 PRK08560 tyrosyl-tRNA syntheta 100.0 8.6E-69 1.9E-73 538.0 25.0 291 7-325 6-322 (329)
13 PTZ00126 tyrosyl-tRNA syntheta 100.0 3.2E-67 6.9E-72 533.9 26.4 291 8-325 43-365 (383)
14 PTZ00348 tyrosyl-tRNA syntheta 100.0 1.1E-61 2.5E-66 519.8 27.1 290 21-326 20-340 (682)
15 cd00395 Tyr_Trp_RS_core cataly 100.0 3E-60 6.4E-65 464.9 26.5 246 37-315 1-273 (273)
16 cd00805 TyrRS_core catalytic c 100.0 1.7E-60 3.7E-65 465.9 21.8 251 36-315 1-269 (269)
17 PLN02486 aminoacyl-tRNA ligase 100.0 9.2E-60 2E-64 478.5 23.8 304 3-327 40-369 (383)
18 PF00579 tRNA-synt_1b: tRNA sy 100.0 1.9E-59 4.2E-64 463.2 14.6 276 32-317 2-292 (292)
19 PRK05912 tyrosyl-tRNA syntheta 100.0 1.9E-56 4E-61 459.8 26.6 283 9-324 6-316 (408)
20 PRK13354 tyrosyl-tRNA syntheta 100.0 4.9E-53 1.1E-57 434.2 25.2 277 15-324 12-314 (410)
21 TIGR00234 tyrS tyrosyl-tRNA sy 100.0 2.9E-48 6.4E-53 395.4 22.6 250 22-319 21-295 (377)
22 KOG2144|consensus 100.0 2.8E-45 6E-50 350.1 16.2 284 22-325 24-333 (360)
23 COG0162 TyrS Tyrosyl-tRNA synt 100.0 5.7E-42 1.2E-46 348.6 25.4 280 22-340 22-320 (401)
24 KOG2145|consensus 100.0 1.1E-37 2.4E-42 298.1 14.3 306 3-327 52-382 (397)
25 PTZ00348 tyrosyl-tRNA syntheta 100.0 4.2E-36 9.1E-41 322.8 21.7 231 65-324 405-661 (682)
26 KOG2623|consensus 100.0 4.2E-35 9.1E-40 290.0 18.4 271 35-340 63-368 (467)
27 cd00808 GluRS_core catalytic c 99.7 5.2E-16 1.1E-20 149.4 12.8 171 42-255 8-191 (239)
28 cd00802 class_I_aaRS_core cata 99.5 2E-13 4.4E-18 121.2 11.3 63 160-233 78-143 (143)
29 cd00418 GlxRS_core catalytic c 99.1 7.1E-10 1.5E-14 106.4 12.1 171 42-255 8-182 (230)
30 PRK00750 lysK lysyl-tRNA synth 99.0 5.2E-08 1.1E-12 103.8 20.7 202 35-254 24-308 (510)
31 cd00674 LysRS_core_class_I cat 98.8 5.6E-08 1.2E-12 98.9 14.4 198 34-255 19-304 (353)
32 PRK05710 glutamyl-Q tRNA(Asp) 98.5 6.6E-07 1.4E-11 89.1 10.8 176 41-235 11-243 (299)
33 TIGR00467 lysS_arch lysyl-tRNA 98.5 1.6E-06 3.5E-11 92.4 12.7 82 34-118 18-128 (515)
34 PRK14895 gltX glutamyl-tRNA sy 98.4 3.8E-06 8.2E-11 89.1 14.5 196 38-256 5-270 (513)
35 TIGR00464 gltX_bact glutamyl-t 98.3 1.9E-05 4.1E-10 83.6 17.6 190 43-255 9-270 (470)
36 PF01921 tRNA-synt_1f: tRNA sy 98.3 1.5E-05 3.2E-10 81.1 15.7 217 33-268 22-322 (360)
37 PRK01406 gltX glutamyl-tRNA sy 98.2 1.2E-05 2.7E-10 85.1 12.2 194 40-255 9-280 (476)
38 cd00672 CysRS_core catalytic c 98.2 3.1E-05 6.7E-10 73.8 12.7 156 32-244 18-187 (213)
39 TIGR03838 queuosine_YadB gluta 98.1 2.7E-05 5.8E-10 76.8 12.0 192 43-255 8-254 (272)
40 cd09287 GluRS_non_core catalyt 98.1 2.2E-05 4.8E-10 76.0 9.9 168 38-234 4-172 (240)
41 PRK00260 cysS cysteinyl-tRNA s 98.1 0.00019 4.1E-09 76.0 17.7 207 33-255 21-295 (463)
42 cd02156 nt_trans nucleotidyl t 98.0 2.4E-05 5.3E-10 65.8 7.8 57 38-99 2-58 (105)
43 cd00668 Ile_Leu_Val_MetRS_core 98.0 5.8E-05 1.3E-09 75.5 11.6 60 172-244 226-286 (312)
44 PRK12558 glutamyl-tRNA synthet 97.9 2.9E-05 6.4E-10 81.4 8.4 192 41-256 8-270 (445)
45 cd00807 GlnRS_core catalytic c 97.9 4.9E-05 1.1E-09 73.4 9.2 159 42-234 8-170 (238)
46 COG0008 GlnS Glutamyl- and glu 97.9 4.5E-05 9.9E-10 80.5 9.6 178 38-234 10-256 (472)
47 PLN02627 glutamyl-tRNA synthet 97.9 0.00017 3.7E-09 77.0 13.2 200 35-256 45-323 (535)
48 PRK12410 glutamylglutaminyl-tR 97.8 9.9E-05 2.1E-09 77.2 10.8 190 43-256 7-265 (433)
49 PF00749 tRNA-synt_1c: tRNA sy 97.8 0.00023 5.1E-09 71.6 11.8 175 42-235 8-250 (314)
50 PRK04156 gltX glutamyl-tRNA sy 97.8 0.00016 3.5E-09 77.8 11.0 182 34-234 100-344 (567)
51 cd00812 LeuRS_core catalytic c 97.7 0.0001 2.2E-09 74.0 8.7 81 43-124 10-102 (314)
52 PLN03233 putative glutamate-tR 97.7 0.00019 4.1E-09 76.5 10.5 171 42-233 18-251 (523)
53 PRK01611 argS arginyl-tRNA syn 97.7 0.00015 3.2E-09 77.6 9.8 185 39-244 117-335 (507)
54 TIGR00435 cysS cysteinyl-tRNA 97.7 0.00068 1.5E-08 71.8 14.1 209 32-255 19-294 (465)
55 PTZ00402 glutamyl-tRNA synthet 97.6 0.00033 7.1E-09 75.7 10.2 175 40-234 57-294 (601)
56 cd00671 ArgRS_core catalytic c 97.5 0.0011 2.3E-08 62.9 11.3 185 39-234 6-212 (212)
57 COG1384 LysS Lysyl-tRNA synthe 97.5 0.0013 2.8E-08 69.3 12.5 70 167-250 224-301 (521)
58 PLN02859 glutamine-tRNA ligase 97.3 0.0015 3.2E-08 72.5 11.0 192 20-234 250-505 (788)
59 PLN02907 glutamate-tRNA ligase 97.2 0.00092 2E-08 74.3 8.2 175 38-233 214-453 (722)
60 PRK14536 cysS cysteinyl-tRNA s 96.8 0.013 2.9E-07 62.4 12.4 76 33-108 21-119 (490)
61 PRK05347 glutaminyl-tRNA synth 96.3 0.011 2.4E-07 63.6 8.0 95 37-138 29-133 (554)
62 PF01406 tRNA-synt_1e: tRNA sy 96.3 0.082 1.8E-06 52.9 13.5 195 34-244 7-265 (300)
63 TIGR00440 glnS glutaminyl-tRNA 96.3 0.012 2.5E-07 63.2 7.7 89 43-138 8-104 (522)
64 TIGR00463 gltX_arch glutamyl-t 96.2 0.01 2.2E-07 64.1 7.2 94 37-138 93-196 (560)
65 PTZ00437 glutaminyl-tRNA synth 96.2 0.012 2.6E-07 63.4 7.4 111 19-138 36-154 (574)
66 PLN02946 cysteine-tRNA ligase 96.1 0.061 1.3E-06 58.2 12.0 72 35-107 80-165 (557)
67 PRK14535 cysS cysteinyl-tRNA s 96.0 0.6 1.3E-05 51.7 19.2 75 34-109 247-335 (699)
68 PRK14534 cysS cysteinyl-tRNA s 95.6 0.1 2.2E-06 55.6 11.4 74 35-108 21-117 (481)
69 PRK12418 cysteinyl-tRNA synthe 95.5 0.12 2.6E-06 53.6 11.3 71 37-108 12-96 (384)
70 PRK14703 glutaminyl-tRNA synth 95.4 0.057 1.2E-06 60.5 8.8 95 37-138 31-135 (771)
71 COG0215 CysS Cysteinyl-tRNA sy 95.1 0.11 2.4E-06 54.8 9.5 85 157-255 206-297 (464)
72 COG0162 TyrS Tyrosyl-tRNA synt 94.2 0.057 1.2E-06 56.2 4.6 114 206-327 212-358 (401)
73 PRK12300 leuS leucyl-tRNA synt 93.7 0.51 1.1E-05 54.2 11.5 71 171-256 529-607 (897)
74 COG0143 MetG Methionyl-tRNA sy 93.7 0.26 5.6E-06 53.5 8.6 75 34-108 5-92 (558)
75 PF09334 tRNA-synt_1g: tRNA sy 93.3 0.34 7.4E-06 50.3 8.6 79 43-124 9-99 (391)
76 PRK00133 metG methionyl-tRNA s 93.3 0.27 5.9E-06 54.6 8.2 74 35-108 3-89 (673)
77 PRK05743 ileS isoleucyl-tRNA s 92.2 0.22 4.7E-06 57.3 5.7 60 169-243 542-604 (912)
78 PLN02224 methionine-tRNA ligas 91.4 0.78 1.7E-05 50.5 8.7 77 32-108 67-156 (616)
79 TIGR00392 ileS isoleucyl-tRNA 91.2 0.31 6.7E-06 55.7 5.7 73 171-256 563-641 (861)
80 cd00818 IleRS_core catalytic c 91.2 0.23 5E-06 50.5 4.1 59 171-244 251-312 (338)
81 cd00817 ValRS_core catalytic c 91.0 0.17 3.6E-06 52.4 2.9 61 171-244 295-356 (382)
82 PRK00390 leuS leucyl-tRNA synt 90.4 0.6 1.3E-05 53.0 7.0 88 34-123 32-133 (805)
83 TIGR00395 leuS_arch leucyl-tRN 89.7 0.46 9.9E-06 54.9 5.4 73 171-256 572-650 (938)
84 PRK12268 methionyl-tRNA synthe 89.6 1.1 2.5E-05 48.4 8.1 73 37-109 5-92 (556)
85 PRK11893 methionyl-tRNA synthe 89.5 1.1 2.5E-05 47.6 7.9 75 41-117 9-95 (511)
86 PF00133 tRNA-synt_1: tRNA syn 89.3 0.46 1E-05 52.1 4.8 61 171-244 513-574 (601)
87 TIGR00396 leuS_bact leucyl-tRN 89.1 0.74 1.6E-05 52.6 6.4 88 36-124 31-131 (842)
88 PLN02610 probable methionyl-tR 88.5 1.3 2.8E-05 50.3 7.8 75 34-108 17-105 (801)
89 cd00814 MetRS_core catalytic c 88.3 1.1 2.5E-05 44.9 6.5 67 43-109 10-88 (319)
90 PRK11893 methionyl-tRNA synthe 88.0 0.28 6.1E-06 52.3 2.0 72 171-256 253-329 (511)
91 PRK12267 methionyl-tRNA synthe 87.7 2.3 4.9E-05 47.1 8.9 66 43-108 14-91 (648)
92 PRK14900 valS valyl-tRNA synth 87.5 0.4 8.8E-06 55.9 3.1 72 171-255 490-567 (1052)
93 COG0495 LeuS Leucyl-tRNA synth 87.1 2.7 5.9E-05 47.6 9.1 74 171-256 525-609 (814)
94 PRK12267 methionyl-tRNA synthe 86.9 1.7 3.7E-05 48.1 7.4 71 172-256 254-329 (648)
95 PLN02660 pantoate--beta-alanin 85.9 2.3 5E-05 42.4 7.0 66 171-255 145-210 (284)
96 PRK00390 leuS leucyl-tRNA synt 85.8 2.5 5.5E-05 48.1 8.2 71 171-256 522-600 (805)
97 PRK05729 valS valyl-tRNA synth 85.5 0.96 2.1E-05 51.9 4.7 72 171-255 472-549 (874)
98 PRK13804 ileS isoleucyl-tRNA s 85.5 0.54 1.2E-05 54.4 2.6 72 169-255 580-659 (961)
99 PLN02843 isoleucyl-tRNA synthe 85.0 0.69 1.5E-05 53.6 3.3 59 169-242 561-622 (974)
100 TIGR00398 metG methionyl-tRNA 84.7 2 4.3E-05 46.2 6.4 67 42-108 8-86 (530)
101 PRK13208 valS valyl-tRNA synth 84.5 0.93 2E-05 51.4 3.9 71 171-254 485-561 (800)
102 TIGR00396 leuS_bact leucyl-tRN 84.3 1.3 2.8E-05 50.7 4.9 76 171-255 519-633 (842)
103 TIGR03447 mycothiol_MshC cyste 83.9 0.9 1.9E-05 47.6 3.2 69 37-106 39-120 (411)
104 PLN02959 aminoacyl-tRNA ligase 83.7 1.1 2.3E-05 52.7 4.0 71 171-255 670-747 (1084)
105 PLN02563 aminoacyl-tRNA ligase 83.7 0.99 2.2E-05 52.2 3.8 27 170-196 614-641 (963)
106 PTZ00399 cysteinyl-tRNA-synthe 83.6 0.68 1.5E-05 51.3 2.3 83 159-255 255-344 (651)
107 KOG1149|consensus 83.4 2 4.4E-05 45.0 5.5 98 35-138 33-145 (524)
108 cd00814 MetRS_core catalytic c 82.9 1.6 3.6E-05 43.8 4.6 59 172-244 235-293 (319)
109 PLN02563 aminoacyl-tRNA ligase 82.3 3.6 7.8E-05 47.7 7.5 74 35-108 111-198 (963)
110 PRK06039 ileS isoleucyl-tRNA s 82.1 1.2 2.5E-05 51.8 3.5 75 170-256 543-622 (975)
111 TIGR00456 argS arginyl-tRNA sy 81.5 1.5 3.3E-05 47.8 4.0 67 174-255 330-396 (566)
112 cd00818 IleRS_core catalytic c 81.4 2.4 5.2E-05 43.1 5.2 65 43-107 11-104 (338)
113 TIGR00018 panC pantoate--beta- 80.9 6.2 0.00013 39.4 7.7 66 171-255 142-207 (282)
114 TIGR00422 valS valyl-tRNA synt 80.7 1.2 2.7E-05 50.8 3.1 73 171-256 477-555 (861)
115 KOG1147|consensus 80.6 4.6 0.0001 43.5 7.0 75 41-125 206-283 (712)
116 PLN02943 aminoacyl-tRNA ligase 80.4 1.4 3.1E-05 51.0 3.5 72 171-255 535-612 (958)
117 PRK12268 methionyl-tRNA synthe 79.9 1.4 3E-05 47.7 3.1 70 174-256 289-364 (556)
118 PTZ00419 valyl-tRNA synthetase 79.9 1.6 3.5E-05 50.7 3.7 60 170-242 536-596 (995)
119 PLN02381 valyl-tRNA synthetase 79.7 1.5 3.2E-05 51.4 3.3 60 171-243 607-667 (1066)
120 PLN02882 aminoacyl-tRNA ligase 77.3 4.4 9.6E-05 47.9 6.3 61 171-243 566-626 (1159)
121 cd00817 ValRS_core catalytic c 77.3 2.6 5.6E-05 43.6 3.9 93 43-136 11-132 (382)
122 TIGR00398 metG methionyl-tRNA 76.7 2.2 4.8E-05 45.9 3.4 66 175-255 285-356 (530)
123 COG0525 ValS Valyl-tRNA synthe 76.2 9.5 0.00021 43.6 8.2 36 216-256 515-555 (877)
124 PTZ00419 valyl-tRNA synthetase 75.7 3.9 8.4E-05 47.7 5.2 45 36-80 62-111 (995)
125 KOG2007|consensus 73.3 2.3 5.1E-05 45.3 2.4 85 156-256 242-335 (586)
126 KOG0432|consensus 71.9 4.4 9.5E-05 45.9 4.2 19 215-235 582-600 (995)
127 PRK13208 valS valyl-tRNA synth 71.5 5.9 0.00013 45.0 5.3 74 35-108 39-138 (800)
128 PRK00380 panC pantoate--beta-a 71.2 32 0.00069 34.3 9.8 27 171-197 139-165 (281)
129 PTZ00427 isoleucine-tRNA ligas 71.2 6.2 0.00013 46.9 5.5 77 153-242 652-731 (1205)
130 COG0060 IleS Isoleucyl-tRNA sy 70.7 5.9 0.00013 45.6 5.0 50 173-235 556-609 (933)
131 COG0495 LeuS Leucyl-tRNA synth 69.0 9.4 0.0002 43.4 6.1 100 35-136 35-149 (814)
132 PLN02224 methionine-tRNA ligas 68.9 5.5 0.00012 44.0 4.2 72 171-256 320-396 (616)
133 TIGR03447 mycothiol_MshC cyste 68.4 20 0.00044 37.6 8.0 74 156-242 225-299 (411)
134 cd02168 NMNAT_Nudix Nicotinami 67.7 23 0.00051 32.8 7.5 67 42-118 8-77 (181)
135 PLN02286 arginine-tRNA ligase 67.4 8 0.00017 42.4 5.0 63 173-244 329-391 (576)
136 PRK14900 valS valyl-tRNA synth 67.0 7.2 0.00015 45.8 4.8 47 34-80 48-99 (1052)
137 COG0143 MetG Methionyl-tRNA sy 66.2 17 0.00036 39.8 7.1 68 175-256 291-363 (558)
138 cd00560 PanC Pantoate-beta-ala 64.3 11 0.00024 37.5 5.0 27 171-197 140-166 (277)
139 COG0525 ValS Valyl-tRNA synthe 64.2 4.9 0.00011 45.8 2.7 65 44-108 44-136 (877)
140 cd02166 NMNAT_Archaea Nicotina 63.3 35 0.00076 30.9 7.7 66 42-118 8-77 (163)
141 PRK12451 arginyl-tRNA syntheta 61.5 8.6 0.00019 42.0 3.9 60 172-244 325-384 (562)
142 PLN02843 isoleucyl-tRNA synthe 60.4 16 0.00034 42.7 5.9 77 33-109 31-136 (974)
143 KOG0435|consensus 60.3 33 0.00071 38.3 7.8 102 32-138 55-174 (876)
144 TIGR00456 argS arginyl-tRNA sy 59.8 9.9 0.00021 41.5 4.0 41 38-78 117-162 (566)
145 PRK00133 metG methionyl-tRNA s 59.7 3.6 7.8E-05 45.8 0.6 64 175-255 287-358 (673)
146 COG0018 ArgS Arginyl-tRNA synt 59.4 13 0.00027 40.9 4.7 66 173-250 336-402 (577)
147 TIGR00422 valS valyl-tRNA synt 59.3 6.5 0.00014 45.1 2.6 75 34-108 33-136 (861)
148 PF09334 tRNA-synt_1g: tRNA sy 59.3 3.2 6.9E-05 43.2 0.1 66 175-255 285-356 (391)
149 COG0018 ArgS Arginyl-tRNA synt 56.4 15 0.00032 40.4 4.6 41 39-79 123-168 (577)
150 COG0414 PanC Panthothenate syn 55.2 1.3E+02 0.0028 30.1 10.3 49 171-232 141-189 (285)
151 PLN02610 probable methionyl-tR 54.9 9.2 0.0002 43.6 2.8 70 175-256 304-379 (801)
152 PRK05729 valS valyl-tRNA synth 54.5 8.2 0.00018 44.3 2.4 75 34-108 36-139 (874)
153 PF00133 tRNA-synt_1: tRNA syn 53.9 17 0.00036 40.0 4.6 46 35-80 24-74 (601)
154 PF00750 tRNA-synt_1d: tRNA sy 53.7 18 0.00039 37.0 4.5 62 172-244 239-301 (354)
155 PLN02943 aminoacyl-tRNA ligase 46.9 21 0.00045 41.6 4.1 47 34-80 88-139 (958)
156 PLN02381 valyl-tRNA synthetase 46.7 15 0.00032 43.4 2.8 46 35-80 129-179 (1066)
157 PF00750 tRNA-synt_1d: tRNA sy 45.4 15 0.00032 37.7 2.4 41 39-79 26-71 (354)
158 PRK01153 nicotinamide-nucleoti 44.9 84 0.0018 28.9 7.1 66 42-118 9-78 (174)
159 PRK13804 ileS isoleucyl-tRNA s 44.8 16 0.00034 42.6 2.7 45 36-80 56-105 (961)
160 PRK12451 arginyl-tRNA syntheta 44.7 22 0.00048 38.8 3.7 40 39-78 119-163 (562)
161 PRK06039 ileS isoleucyl-tRNA s 44.4 15 0.00033 42.7 2.6 47 34-80 41-92 (975)
162 PLN02286 arginine-tRNA ligase 43.6 19 0.00041 39.5 3.0 40 39-78 123-167 (576)
163 PRK13477 bifunctional pantoate 41.5 98 0.0021 33.6 7.9 49 171-232 140-188 (512)
164 PRK05743 ileS isoleucyl-tRNA s 39.4 20 0.00044 41.5 2.5 74 36-109 51-152 (912)
165 PF02569 Pantoate_ligase: Pant 35.6 16 0.00035 36.4 0.8 49 171-232 140-188 (280)
166 TIGR00392 ileS isoleucyl-tRNA 35.4 27 0.00058 40.1 2.7 48 33-80 35-87 (861)
167 KOG1148|consensus 34.3 64 0.0014 35.5 5.0 93 37-139 248-352 (764)
168 KOG0436|consensus 33.8 1.3E+02 0.0029 31.9 7.0 66 42-108 48-126 (578)
169 COG4320 Uncharacterized protei 33.1 59 0.0013 33.2 4.3 53 3-78 36-88 (410)
170 PRK13793 nicotinamide-nucleoti 32.6 1.3E+02 0.0029 28.4 6.4 77 37-127 7-87 (196)
171 PF02662 FlpD: Methyl-viologen 32.6 1.6E+02 0.0035 25.5 6.5 71 40-117 32-103 (124)
172 KOG0437|consensus 31.7 87 0.0019 35.5 5.6 10 226-235 708-717 (1080)
173 PRK05379 bifunctional nicotina 31.2 2.5E+02 0.0055 28.5 8.7 71 36-118 8-82 (340)
174 PF04255 DUF433: Protein of un 30.8 84 0.0018 23.2 3.9 37 271-309 18-54 (56)
175 TIGR00395 leuS_arch leucyl-tRN 30.1 30 0.00066 40.2 2.0 37 36-72 27-67 (938)
176 KOG0432|consensus 29.5 48 0.001 38.0 3.2 36 45-80 87-125 (995)
177 KOG0433|consensus 29.3 51 0.0011 37.2 3.4 60 172-252 566-630 (937)
178 PTZ00427 isoleucine-tRNA ligas 29.1 41 0.00089 40.2 2.8 45 36-80 104-153 (1205)
179 KOG0435|consensus 28.0 2.2E+02 0.0047 32.2 7.7 48 227-278 616-668 (876)
180 cd06546 GH18_CTS3_chitinase GH 27.2 3.2E+02 0.0069 26.6 8.3 70 37-106 35-114 (256)
181 PLN02882 aminoacyl-tRNA ligase 26.4 47 0.001 39.6 2.7 46 35-80 39-89 (1159)
182 PLN02959 aminoacyl-tRNA ligase 26.4 42 0.00092 39.7 2.3 35 44-79 56-93 (1084)
183 PF08712 Nfu_N: Scaffold prote 25.5 1E+02 0.0022 25.1 3.8 41 64-104 45-87 (87)
184 PF10609 ParA: ParA/MinD ATPas 24.9 16 0.00034 29.7 -1.1 20 399-418 53-72 (81)
185 PTZ00399 cysteinyl-tRNA-synthe 24.0 2.5E+02 0.0054 31.5 7.6 75 34-109 59-149 (651)
186 KOG0436|consensus 22.8 48 0.001 35.1 1.6 23 42-67 129-151 (578)
187 KOG0744|consensus 22.8 8.9E+02 0.019 25.3 11.6 152 10-169 220-418 (423)
188 COG1056 NadR Nicotinamide mono 21.7 1.6E+02 0.0036 27.2 4.8 71 36-117 5-79 (172)
189 PHA01929 putative scaffolding 21.0 4.4E+02 0.0096 26.2 7.7 48 269-316 116-172 (306)
190 COG5309 Exo-beta-1,3-glucanase 20.7 2.9E+02 0.0063 27.7 6.4 96 11-108 76-173 (305)
191 PF09551 Spore_II_R: Stage II 20.6 2.2E+02 0.0047 25.2 5.1 48 302-353 19-66 (130)
No 1
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-99 Score=772.94 Aligned_cols=355 Identities=28% Similarity=0.447 Sum_probs=328.1
Q ss_pred CcEEEEeecCCCccchhhHHHHHHHHHHHHH-cCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q psy3680 35 PQRIFSGIQPTGTLHLGNYFGAVQTWSALQN-KGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILF 113 (422)
Q Consensus 35 ~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~-~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~ 113 (422)
..+|||||+|||.||||||+|+|++|+++|+ .|++++||||||||+|++.+|+++++++++++++|+|||+||+|++||
T Consensus 2 ~~rvlSGiqPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~lr~~~~e~aa~~LA~GlDPek~~if 81 (431)
T PRK12284 2 TTRVLTGITTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARIQRSTLEIAATWLAAGLDPERVTFY 81 (431)
T ss_pred ceEEEEEecCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHHHHHHHHHHHHHHHHhCCCccceEEE
Confidence 4689999999999999999999999999986 688999999999999988999999999999999999999999999999
Q ss_pred EcCCCcchhHHHHHHhhccchhhhhcchhHHHHhhhc--------CCCCccchhhHHHhhhhhhccCccEEeecCchhHH
Q psy3680 114 QQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAEL--------KQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHN 185 (422)
Q Consensus 114 ~qSdi~e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~--------~~~~~gl~~YPvLqAaDil~~~a~~vpvG~DQ~~h 185 (422)
+||++|+|+||+|+|+|++++++|+|+++||++..+. +++++|+|+||||||||||+|++|+||||.||+||
T Consensus 82 ~QSdvpeh~EL~wiL~~it~~g~L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAADILly~ad~VPVG~DQ~qH 161 (431)
T PRK12284 82 RQSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAADILMFNAHKVPVGRDQIQH 161 (431)
T ss_pred ECCcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHhhhhhcCCCEEEEcchhHHH
Confidence 9999999999999999999999999999999876421 34799999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccC-ccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHHHHhhhhccCCCCcc
Q psy3680 186 INLANHLTQLFNNKFD-KIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAV 264 (422)
Q Consensus 186 ielaRdia~r~n~~~g-~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~A~tD~~~~~ 264 (422)
+|||||||+|||+.|| ++|++|++++. ..+++||||+| +|||||++| +|+|+|+|++|++||++|+||+.+
T Consensus 162 lELaRdIA~rFN~~yg~~~F~~Pe~~i~-~~~~~I~gLdg--~KMSKS~~n---~I~L~Ds~~~I~kKI~~A~TDs~~-- 233 (431)
T PRK12284 162 IEMARDIAQRFNHLYGGEFFVLPEAVIE-ESVATLPGLDG--RKMSKSYDN---TIPLFAPREELKKAIFSIVTDSRA-- 233 (431)
T ss_pred HHHHHHHHHHHhhhcCCcccCCCccccc-cccccccCCCC--ccccCCCCC---EeeecCCHHHHHHHHhcCCCCCCC--
Confidence 9999999999999997 89999999986 36899999973 699999975 999999999999999999999864
Q ss_pred ccCCCCCcchhhHHHHHHhcCC-CCHHHHHHHHh-CCChhHHHHHHHHHHHhhcCcHHHHHHHHhcCHHHHHHHHHhhHH
Q psy3680 265 TYDPENRPAVSNLITLHALCTN-QLPQDICTQVK-HLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVLLDGSI 342 (422)
Q Consensus 265 ~~~p~~~p~~~~l~~~~~~~t~-~~~eei~~~~~-~~~~~dlK~~Lae~i~~~l~pir~~~~~l~~~~~~l~~iL~~Ga~ 342 (422)
..++++|+++|++.||+.|++ .++++++++|. +++|+++|+.|++.|+++|+|+|++|+++++|+++|++||++|++
T Consensus 234 -~~~~~~pe~snLl~i~~~~~~~~~~eel~~~~~~g~~~g~~K~~Lae~i~~~L~PiRer~~~l~~d~~~l~~iL~~Ga~ 312 (431)
T PRK12284 234 -PGEPKDTEGSALFQLYQAFATPEETAAFRQALADGIGWGDAKQRLFERIDRELAPMRERYEALIARPADIEDILLAGAA 312 (431)
T ss_pred -CCCCCCCCcchHHHHHHHhCCcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 233488999999999999985 67899999997 799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCccccccCCccCCCC-CCCccceeEeEecCCcEEEeec
Q psy3680 343 RAQAIAVETWDEVKSAAVGGILTAFGQGTYLGTP-EMDGLLLVSYRWADYQLTLAFD 398 (422)
Q Consensus 343 kAr~iA~~tl~~vr~avgl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 398 (422)
|||++|++||++||++|||+.+.+..+.+...++ +.+.|+|+||||+||+||.-+.
T Consensus 313 kAr~~A~~tl~~vr~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (431)
T PRK12284 313 KARRIATPFLAELREAVGLRSLSSAAQAAAAAKKKAAKAPRFKQYREDDGSFYFKLL 369 (431)
T ss_pred HHHHHHHHHHHHHHHHhCChhhccccccccchhhhhhccchhhhhhccCCcEEEEEe
Confidence 9999999999999999999988886666554444 5678999999999999997654
No 2
>KOG2713|consensus
Probab=100.00 E-value=3.8e-95 Score=690.57 Aligned_cols=328 Identities=48% Similarity=0.799 Sum_probs=317.4
Q ss_pred CCcEEEEeecCCCccchhhHHHHHHHHHHHHHcC---CcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q psy3680 34 FPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKG---EDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKS 110 (422)
Q Consensus 34 ~~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g---~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~ 110 (422)
.+.||++||||||.+|||||+|++++|++||+.. ..++|+|+|+||+|.|.+|..+|+++.+++|.+||||+||+|+
T Consensus 12 ~~~rvfSGIQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~~lrq~~~dm~A~lLAcGIdp~Ks 91 (347)
T KOG2713|consen 12 PPKRVFSGIQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVPQDPAELRQATHDMAASLLACGIDPEKS 91 (347)
T ss_pred CcceeEeccCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCCCChHHHHHHHHHHHHHHHHhccCcccc
Confidence 3789999999999999999999999999999964 4599999999999999999999999999999999999999999
Q ss_pred EEEEcCCCcchhHHHHHHhhccchhhhhcchhHHHHhhhc--CCCCccchhhHHHhhhhhhccCccEEeecCchhHHHHH
Q psy3680 111 ILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAEL--KQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINL 188 (422)
Q Consensus 111 ~i~~qSdi~e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~--~~~~~gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hiel 188 (422)
.+|+||++|+|.|+.|+|+|.+++|+|+|++|||+|.... ..+++|+|+||+||||||++|++++||||.||.||+||
T Consensus 92 ~lF~QS~Vpqh~el~WlLsslt~mg~L~rm~Q~KeKs~~~~~~~~~vGLftYPvLqAADILLYksThVPVGeDQsQHleL 171 (347)
T KOG2713|consen 92 SLFVQSDVPQHAELSWLLSSLTTMGRLARMPQWKEKSERFKVGDVPVGLFTYPVLQAADILLYKSTHVPVGEDQSQHLEL 171 (347)
T ss_pred eeeeeccchHHHHHHHHHHhccchHHHHhhHHHHhhhhhhccCccceeeecchhHhhhhHhhhccccccCCccHHHHHHH
Confidence 9999999999999999999999999999999999998643 67999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccC-ccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHHHHhhhhccCCCCccccC
Q psy3680 189 ANHLTQLFNNKFD-KIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYD 267 (422)
Q Consensus 189 aRdia~r~n~~~g-~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~A~tD~~~~~~~~ 267 (422)
+|++|++||+.|| ++|++|+.++. ..+++|++|.+|.+|||||++|++++|+|+|+|+.|.+||++|.||....++||
T Consensus 172 ~r~lA~~fN~~Y~~~~fpvP~~il~-~~~~rV~SL~dpekKMSKSd~n~~s~I~l~DS~~~I~~Ki~ka~TD~~~~vtYd 250 (347)
T KOG2713|consen 172 ARHLAQAFNKTYGTEIFPVPEQILR-QSHARVMSLRDPEKKMSKSDPNPKSRINLTDSPDLIVKKIKKAQTDNTSGVTYD 250 (347)
T ss_pred HHHHHHHHhhhccCeeecCcHHHHh-hhhhhhhhccChhhhcccCCCCCcceEEecCCHHHHHHHHHHHhcccccceeeC
Confidence 9999999999999 99999999996 248999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhhHHHHHHhcCCCCHHHHHHHHhCCChhHHHHHHHHHHHhhcCcHHHHHHHHhcCHHHHHHHHHhhHHHHHHH
Q psy3680 268 PENRPAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVLLDGSIRAQAI 347 (422)
Q Consensus 268 p~~~p~~~~l~~~~~~~t~~~~eei~~~~~~~~~~dlK~~Lae~i~~~l~pir~~~~~l~~~~~~l~~iL~~Ga~kAr~i 347 (422)
|.+||+++|++.+|++.++.+.+|+.+.+.+++++++|..|||+|++.|.|||++|++++++++++++||.+|++|||++
T Consensus 251 ~~~RpgvsNLlni~aaVt~~s~eeV~~~~a~~~~~~fK~~vaeAvie~L~PIr~~fee~~~~~~~l~kvl~~GaekAre~ 330 (347)
T KOG2713|consen 251 PANRPGVSNLLNIYAAVTGKSIEEVVEESANMSTADFKDNVAEAVIEHLAPIRTEFEELINEPEYLDKVLEEGAEKAREL 330 (347)
T ss_pred CccccchhHHHHHHHHHcCCCHHHHHHHhccCCHHHHHHHHHHHHHHHhccHHHHHHHHhcCHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccC
Q psy3680 348 AVETWDEVKSAAVGG 362 (422)
Q Consensus 348 A~~tl~~vr~avgl~ 362 (422)
|..+|.+|++.||+.
T Consensus 331 A~~~l~~ik~~~Gf~ 345 (347)
T KOG2713|consen 331 AAKNLEEIKQLMGFL 345 (347)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999999864
No 3
>PLN02886 aminoacyl-tRNA ligase
Probab=100.00 E-value=7.9e-92 Score=710.73 Aligned_cols=326 Identities=38% Similarity=0.660 Sum_probs=310.9
Q ss_pred CcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q psy3680 35 PQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQ 114 (422)
Q Consensus 35 ~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~ 114 (422)
..+||+||+|||.+|||||+|+|++|+++|+ |++++||||||||+|.+.+++++++++++++++|+|||+||+|++||+
T Consensus 46 ~~~v~sGiqPSG~lHLGnylGai~~~v~lQ~-~~~~~~~IADlHAlt~~~~~~~lr~~~~~~~a~~lA~GlDP~ks~if~ 124 (389)
T PLN02886 46 KKRVVSGVQPTGSIHLGNYLGAIKNWVALQE-TYDTFFCVVDLHAITLPHDPRELGKATRSTAAIYLACGIDPSKASVFV 124 (389)
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHHHHHhc-cCCEEEEEecHHHhhCCCCHHHHHHHHHHHHHHHHHcCcCccceEEEE
Confidence 4579999999999999999999999999998 779999999999999888999999999999999999999999999999
Q ss_pred cCCCcchhHHHHHHhhccchhhhhcchhHHHHhhhc--CCCCccchhhHHHhhhhhhccCccEEeecCchhHHHHHHHHH
Q psy3680 115 QSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAEL--KQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHL 192 (422)
Q Consensus 115 qSdi~e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~--~~~~~gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hielaRdi 192 (422)
||++++|.+|+|+|+|.+++++|+|+++||++.+.. +.+++|+|+||+|||||||+|++|+||||.||+||+|+||||
T Consensus 125 QS~v~e~~eL~wil~~~t~~g~L~R~~q~K~k~~~~~~~~~~~gll~YPvLqAADILl~~a~~VPVG~DQ~qH~eLtRdi 204 (389)
T PLN02886 125 QSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPVLMASDILLYQADLVPVGEDQKQHLELTRDI 204 (389)
T ss_pred eCCCchhHHHHHHHHhhCcHHHHHhcchHHHHHHhcCCCCCChHhhhChHHHHhhhhhcCCCeEEEccchHHHHHHHHHH
Confidence 999999999999999999999999999999987653 468999999999999999999999999999999999999999
Q ss_pred HHHhccccC------------ccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHHHHhhhhccCC
Q psy3680 193 TQLFNNKFD------------KIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDC 260 (422)
Q Consensus 193 a~r~n~~~g------------~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~A~tD~ 260 (422)
|+|||+.|| ++|++|++++++ .+++||||+||.+|||||++|++|+|+|+|+|++|++||++|+||+
T Consensus 205 A~rfN~~y~~~~~~~~~~~~~~~f~~P~~l~~~-~~~ri~~L~~g~~KMSKS~p~~~s~I~L~Ds~e~I~kKI~~a~TD~ 283 (389)
T PLN02886 205 AERVNNLYGGRKWKKLGGRGGSVFKVPEALIPP-AGARVMSLTDGTSKMSKSAPSDQSRINLLDPPDVIANKIKRCKTDS 283 (389)
T ss_pred HHHHhhhccccccccccccCCceecCCeeccCc-ccceeeeCCCCCCcCCCCCCCCCCeEEecCCHHHHHHHHhcCCCCC
Confidence 999999996 489999999963 5789999998878999999987899999999999999999999999
Q ss_pred CCccccCCCCCcchhhHHHHHHhcCCCCHHHHHHHHhCCChhHHHHHHHHHHHhhcCcHHHHHHHHhcCHHHHHHHHHhh
Q psy3680 261 TSAVTYDPENRPAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVLLDG 340 (422)
Q Consensus 261 ~~~~~~~p~~~p~~~~l~~~~~~~t~~~~eei~~~~~~~~~~dlK~~Lae~i~~~l~pir~~~~~l~~~~~~l~~iL~~G 340 (422)
.+.+.++++++|+++|++.+|..|++.+++|++++|.+++++++|+.|++.|+++|.|||++|+++++|+++|++||++|
T Consensus 284 ~~~i~~~~p~~p~v~nl~~i~~~~~~~~~eei~~~~~~~~~g~~K~~Lae~I~~~L~Pirer~~~l~~d~~~l~~iL~~G 363 (389)
T PLN02886 284 FPGLEFDNPERPECNNLLSIYQLVTGKTKEEVLAECGDMRWGDFKPLLTDALIEHLSPIQVRYEEIMSDPSYLDSVLKEG 363 (389)
T ss_pred CCCccCCCCCCcccccHHHHHHHccCCCHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 87777877799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccC
Q psy3680 341 SIRAQAIAVETWDEVKSAAVGG 362 (422)
Q Consensus 341 a~kAr~iA~~tl~~vr~avgl~ 362 (422)
++|||++|++||++||++|||.
T Consensus 364 a~kAr~~A~~tl~~vr~~~Gl~ 385 (389)
T PLN02886 364 ADAAAEIADRTLANVYQAMGFV 385 (389)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999985
No 4
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.5e-88 Score=681.58 Aligned_cols=325 Identities=42% Similarity=0.739 Sum_probs=308.7
Q ss_pred cEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q psy3680 36 QRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQQ 115 (422)
Q Consensus 36 ~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~q 115 (422)
.++|+||+|||.+|||||+|+|++|++||+. ++++++||||||+|+..+++++++++++++++|+|+|+||+|++||+|
T Consensus 2 ~~v~~G~~PTG~lHLG~~~g~~~~~~~lQ~~-~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~q 80 (333)
T PRK00927 2 KRVLSGIQPTGKLHLGNYLGAIKNWVELQDE-YECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKSTIFVQ 80 (333)
T ss_pred CEEEEeeCCCccchHHhHHHHHHHHHHHHhc-CCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheEEEEe
Confidence 5899999999999999999999999999997 799999999999997789999999999999999999999999999999
Q ss_pred CCCcchhHHHHHHhhccchhhhhcchhHHHHhhhc-CCCCccchhhHHHhhhhhhccCccEEeecCchhHHHHHHHHHHH
Q psy3680 116 SQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAEL-KQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQ 194 (422)
Q Consensus 116 Sdi~e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~-~~~~~gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hielaRdia~ 194 (422)
|+|++|.+++|+++|++++++|+|+++||++..+. +++++|+|+||+||||||+++++|+||||.||+||+|+|||+|+
T Consensus 81 S~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~g~~~YP~lQaaDil~~~~divpvG~DQ~~h~elaRdia~ 160 (333)
T PRK00927 81 SHVPEHAELAWILNCITPLGELERMTQFKDKSAKQKENVSAGLFTYPVLMAADILLYKADLVPVGEDQKQHLELTRDIAR 160 (333)
T ss_pred CCCchhHHHHHHHHhhhhHHHHHhhhhHHHHHhccCCCCCcHhhhcHHHHHHHHHhcCCCEEeeccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999987433 67899999999999999999999999999999999999999999
Q ss_pred HhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHHHHhhhhccCCCC--ccccCCCCCc
Q psy3680 195 LFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTS--AVTYDPENRP 272 (422)
Q Consensus 195 r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~A~tD~~~--~~~~~p~~~p 272 (422)
|||++||++|++|++++. ..+++||||+|+++|||||++|+.|+|+|+|+|++|++||++|+||+.. .+.++++++|
T Consensus 161 ~~n~~~~~~f~~P~~i~~-~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~~~~I~~KI~~a~td~~~~~~~~~~~~~~p 239 (333)
T PRK00927 161 RFNNLYGEVFPVPEPLIP-KVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKKAVTDSERLREIRYDLPNKP 239 (333)
T ss_pred HhhhhccccCCCChhhhc-cccccccCCCCCCCCCCCCCCCCCCeEEeeCCHHHHHHHHHhCCCCCCcccccccCCCCCC
Confidence 999999999999999994 2359999999877799999997778999999999999999999999965 4457788999
Q ss_pred chhhHHHHHHhcCCCCHHHHHHHHh--CCChhHHHHHHHHHHHhhcCcHHHHHHHHhcCHHHHHHHHHhhHHHHHHHHHH
Q psy3680 273 AVSNLITLHALCTNQLPQDICTQVK--HLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVLLDGSIRAQAIAVE 350 (422)
Q Consensus 273 ~~~~l~~~~~~~t~~~~eei~~~~~--~~~~~dlK~~Lae~i~~~l~pir~~~~~l~~~~~~l~~iL~~Ga~kAr~iA~~ 350 (422)
+++|+++||+.|++.++++++++|. +++|+++|+.|++.|+++|.|+|++|+++++|+++|++||++|++|||++|++
T Consensus 240 ~~~~l~~~~~~~~~~~~eel~~~~~~g~~~~~~lK~~la~~i~~~l~pire~~~~~~~~~~~~~~il~~G~~~a~~~a~~ 319 (333)
T PRK00927 240 EVSNLLTIYSALSGESIEELEAEYEAGGKGYGDFKKDLAEAVVEFLAPIRERYEELLADPAYLDEILAEGAEKARAVASK 319 (333)
T ss_pred ccccHHHHHHHhCCCCHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 68999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccC
Q psy3680 351 TWDEVKSAAVGG 362 (422)
Q Consensus 351 tl~~vr~avgl~ 362 (422)
||++||++||+.
T Consensus 320 ~l~~v~~~~g~~ 331 (333)
T PRK00927 320 TLKEVREAMGLL 331 (333)
T ss_pred HHHHHHHHcCCC
Confidence 999999999986
No 5
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.4e-88 Score=680.03 Aligned_cols=318 Identities=30% Similarity=0.481 Sum_probs=298.2
Q ss_pred CcEEEEeecCCCccchhhHHHHHHHHHHHHH-cCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q psy3680 35 PQRIFSGIQPTGTLHLGNYFGAVQTWSALQN-KGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILF 113 (422)
Q Consensus 35 ~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~-~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~ 113 (422)
+.+|||||+|||.+|||||+|++++|+++|+ .|++++||||||||+|.+.+++++++++++++++|+|||+||+|++||
T Consensus 3 ~~~v~sGiqPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~~l~~~~~~~~~~~lA~GlDP~k~~if 82 (332)
T PRK12556 3 EKIMLTGIKPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQFRSYTREVAATWLSLGLDPEDVIFY 82 (332)
T ss_pred CCEEEEEECCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHHHHHHHHHHHHHHHhheeecccceEEE
Confidence 3589999999999999999999999999986 567899999999999977899999999999999999999999999999
Q ss_pred EcCCCcchhHHHHHHhhccchhhhhcchhHHHHhhhc--------CCCCccchhhHHHhhhhhhccCccEEeecCchhHH
Q psy3680 114 QQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAEL--------KQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHN 185 (422)
Q Consensus 114 ~qSdi~e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~--------~~~~~gl~~YPvLqAaDil~~~a~~vpvG~DQ~~h 185 (422)
+||++++|++|.|+++|++++|+|+|+++||++.... +..++|+|+||+||||||++|++|+||||.||+||
T Consensus 83 ~qS~v~~~~eL~~il~~~t~~g~L~R~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAADIl~~~~d~VpvG~DQ~qh 162 (332)
T PRK12556 83 RQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAADILLFQATHVPVGKDQIQH 162 (332)
T ss_pred ECCCchHHHHHHHHHHccchHHHHHhccHHHHHHhhhhhhccccCCCCcchhhhchHHHhhhhhhccCCEEEeccccHHH
Confidence 9999999999999999999999999999999987532 25799999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHHHHhhhhccCCCCccc
Q psy3680 186 INLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVT 265 (422)
Q Consensus 186 ielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~A~tD~~~~~~ 265 (422)
+|||||+|+|||+.||++|++|+++++. .++++|||+| +|||||++| +|+|+|+|++|++||++|+||+.+
T Consensus 163 leLtRdiA~rfn~~yg~~f~~P~~~~~~-~~~~l~gLdg--~KMSKS~~n---~I~L~D~p~~I~kKI~ka~Td~~~--- 233 (332)
T PRK12556 163 IEIARDIATYFNHTFGDTFTLPEYVIQE-EGAILPGLDG--RKMSKSYGN---VIPLFAEQEKLRKLIFKIKTDSSL--- 233 (332)
T ss_pred HHHHHHHHHHHHHhccccCCCceecccc-ccccccCCCC--CCCCCCCCC---cccccCCHHHHHHHHHHhccCCCc---
Confidence 9999999999999999999999999852 5899999974 699999976 999999999999999999999854
Q ss_pred cCCCCCcchhhHHHHHHhcCC-CCHHHHHHHHh-CCChhHHHHHHHHHHHhhcCcHHHHHHHHhcCHHHHHHHHHhhHHH
Q psy3680 266 YDPENRPAVSNLITLHALCTN-QLPQDICTQVK-HLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVLLDGSIR 343 (422)
Q Consensus 266 ~~p~~~p~~~~l~~~~~~~t~-~~~eei~~~~~-~~~~~dlK~~Lae~i~~~l~pir~~~~~l~~~~~~l~~iL~~Ga~k 343 (422)
.+++++|+++|+++|++.|++ .++++++++|. +++|+++|++|++.|+++|.|+|++|+++++|+++|++||++|++|
T Consensus 234 ~~~~~~p~~~~l~~i~~~~~~~~~~eei~~~y~~~~~~~~~K~~lae~i~~~l~pire~~~~~~~~~~~~~~il~~G~~k 313 (332)
T PRK12556 234 PNEPKDPETSALFTIYKEFATEEEVQSMREKYETGIGWGDVKKELFRVVDRELAGPREKYAMYMNEPSLLDEALEKGAER 313 (332)
T ss_pred ccCCCCcchhHHHHHHHHHCCchhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 344588999999999999986 57899999998 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcc
Q psy3680 344 AQAIAVETWDEVKSAAVG 361 (422)
Q Consensus 344 Ar~iA~~tl~~vr~avgl 361 (422)
||++|++||++||++|||
T Consensus 314 A~~~A~~tl~~v~~~~g~ 331 (332)
T PRK12556 314 AREIAKPNLAEIKKAIGF 331 (332)
T ss_pred HHHHHHHHHHHHHHhhCC
Confidence 999999999999999996
No 6
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.8e-87 Score=675.95 Aligned_cols=319 Identities=30% Similarity=0.540 Sum_probs=299.7
Q ss_pred CcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccC-CCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q psy3680 35 PQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIK-QKHKDLKENIQLMAASLLACGIDPQKSILF 113 (422)
Q Consensus 35 ~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~-~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~ 113 (422)
+.+|||||+|||.+|||||+|++++|+++|+. ++++||||||||+|+. .+++++++++.+++++|+|||+||+|++||
T Consensus 2 ~~~v~sGiqPSG~~HLGnylG~ik~wv~lq~~-~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if 80 (398)
T PRK12283 2 PDRVLSGMRPTGRLHLGHYHGVLKNWVKLQHE-YECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLF 80 (398)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHhcC-CcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEE
Confidence 35899999999999999999999999999984 5899999999999964 599999999999999999999999999999
Q ss_pred EcCCCcchhHHHHHHhhccchhhhhcchhHHHHhhh---cCCCCccchhhHHHhhhhhhccCccEEeecCchhHHHHHHH
Q psy3680 114 QQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAE---LKQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLAN 190 (422)
Q Consensus 114 ~qSdi~e~~el~w~l~~~~~~~~l~r~~~~K~k~~~---~~~~~~gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hielaR 190 (422)
+||++|+|++|+|+|+|++++++|+|+++||++... .+..++|+|+||+|||||||+|++|+||||.||+||+||||
T Consensus 81 ~QS~v~eh~eL~wil~~~t~~~~L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAADILl~~a~iVPVG~DQ~qHleLaR 160 (398)
T PRK12283 81 IQSKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSADILIYRAGLVPVGEDQVPHVEMTR 160 (398)
T ss_pred ECCCchHHHHHHHHHHhhccHHHHHhhhHHHHHHhhhccccCCcchhhcCcHHHHHHHHhcCCCEeeeccccHHHHHHHH
Confidence 999999999999999999999999999999998864 25689999999999999999999999999999999999999
Q ss_pred HHHHHhccccCc--------------------------------------------------------------------
Q psy3680 191 HLTQLFNNKFDK-------------------------------------------------------------------- 202 (422)
Q Consensus 191 dia~r~n~~~g~-------------------------------------------------------------------- 202 (422)
|||+|||+.||.
T Consensus 161 dIA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (398)
T PRK12283 161 EIARRFNHLYGREPGFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRERLFGYLEGAG 240 (398)
T ss_pred HHHHHHHHhcCccccchhHHHHHhhccchhhHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhccccccccccC
Confidence 999999999984
Q ss_pred --cCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHHHHhhhhccCCCCccccCCCCCcchhhHHHH
Q psy3680 203 --IFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSNLITL 280 (422)
Q Consensus 203 --~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~A~tD~~~~~~~~p~~~p~~~~l~~~ 280 (422)
+|+.|++++ ..+++||||+ | +|||||++| +|+|+|+|++|++||++|+||+.....++| ++|++||+++|
T Consensus 241 ~~~~~~P~~~~--~~~~~I~gLd-g-~KMSKS~~n---~I~L~Ds~~~I~kKI~~a~TDs~~~~~~~~-g~Pe~~nl~~i 312 (398)
T PRK12283 241 KIILPEPQALL--TEASKMPGLD-G-QKMSKSYGN---TIGLREDPESVTKKIRTMPTDPARVRRTDP-GDPEKCPVWQL 312 (398)
T ss_pred CcccCCCcccc--cCCCcccCCC-C-CcCCCCCCC---eeeCcCCHHHHHHHHHhCCCCCcccccCCC-CCCCcCHHHHH
Confidence 389999998 4699999995 4 799999765 999999999999999999999987777788 88999999999
Q ss_pred HHhcCCC-CHHHHHHHHh--CCChhHHHHHHHHHHHhhcCcHHHHHHHHhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3680 281 HALCTNQ-LPQDICTQVK--HLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVLLDGSIRAQAIAVETWDEVKS 357 (422)
Q Consensus 281 ~~~~t~~-~~eei~~~~~--~~~~~dlK~~Lae~i~~~l~pir~~~~~l~~~~~~l~~iL~~Ga~kAr~iA~~tl~~vr~ 357 (422)
|++|++. +.+++.++|. ++++++||+.|++.|+++|.|+|++|.++++|+++|++||++|++|||++|++||++||+
T Consensus 313 ~~~~~~~~~~~~i~~~~~~g~~~~g~~K~~lae~v~e~L~~irer~~~~~~~~~~~~~il~~G~~kA~~~a~~t~~~v~~ 392 (398)
T PRK12283 313 HQVYSDEETKEWVQKGCRSAGIGCLECKQPVIDAILREQQPMRERAQKYEDDPSLVRAIVADGCEKARKVARETMRDVRE 392 (398)
T ss_pred HHHhCCChHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999877 4899999997 478899999999999999999999999999999999999999999999999999999999
Q ss_pred HhccC
Q psy3680 358 AAVGG 362 (422)
Q Consensus 358 avgl~ 362 (422)
+|||+
T Consensus 393 ~~g~~ 397 (398)
T PRK12283 393 AMGLS 397 (398)
T ss_pred HhCCC
Confidence 99975
No 7
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-86 Score=651.36 Aligned_cols=307 Identities=39% Similarity=0.667 Sum_probs=290.5
Q ss_pred cCCCcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCH--HHHHHHHHHHHHHHHHcCCCCCc
Q psy3680 32 ISFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKH--KDLKENIQLMAASLLACGIDPQK 109 (422)
Q Consensus 32 ~~~~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~--~~i~~~~~~i~a~~lA~Gldp~k 109 (422)
...+++|+||++|||.+|||||+|++++|+.+|+.++++||||||+||+|.+.++ +.+++++++++++|+|+||||+|
T Consensus 2 ~~~~~~vlSG~~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k 81 (314)
T COG0180 2 NMKKFRVLSGIQPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEK 81 (314)
T ss_pred CCCCceEEecCCCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccc
Confidence 3567899999999999999999999999999998767999999999999977666 99999999999999999999999
Q ss_pred eEEEEcCCCcchhHHHHHHhhccchhhhhcchhHHHHhhhc-CCCCccchhhHHHhhhhhhccCccEEeecCchhHHHHH
Q psy3680 110 SILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAEL-KQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINL 188 (422)
Q Consensus 110 ~~i~~qSdi~e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~-~~~~~gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hiel 188 (422)
++||.||++|+|.+|.|+|+|.+++|+|+|+++||++..+. .++++|+|.||+|||||||+|++++||||.||.||+||
T Consensus 82 ~~if~QS~v~e~~eLa~~l~~~~~~gel~r~~~fKdk~~~~~~~~~~Gl~~YPvlqAADILl~~a~~VPVG~DQ~qHleL 161 (314)
T COG0180 82 STIFLQSEVPEHAELAWLLSCVTNFGELERMTQFKDKSAKKGESIPIGLLTYPVLQAADILLYQATLVPVGEDQDQHLEL 161 (314)
T ss_pred cEEEEccCchHHHHHHHHHHccCcHHHHHhhcCcchhhhcccccccccchhccHHHHHHhhhccCCeeccCCCchHHHHH
Confidence 99999999999999999999999999999999999988655 58999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHHHHhhhhccCCCCccccCC
Q psy3680 189 ANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDP 268 (422)
Q Consensus 189 aRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~A~tD~~~~~~~~p 268 (422)
|||||+|||+.||++|++|++++++ .++||||+|+ +|||||++| |+|+|+|+|++|++||++|+||+.+.+++++
T Consensus 162 tRDiA~rfn~~y~~~f~~P~~~~~~--~~~i~gL~g~-~KMSkS~~n--s~I~L~D~~~~i~kKI~~~~td~~~~~~~~~ 236 (314)
T COG0180 162 TRDIARRFNHLYGEVFPLPEALISK--VARLPGLDGP-GKMSKSDPN--SAIFLLDDPKTIRKKIKKAATDGPTLIEYRK 236 (314)
T ss_pred HHHHHHHHHhhcCCccCCccccccC--CCcccCCCCC-CcccccCCC--CeeeccCCHHHHHHHHHHhccCCCCccccCC
Confidence 9999999999999999999999963 4899999987 899999998 9999999999999999999999955667777
Q ss_pred CCCcchhhHHHHHHhcC-CCCHHHHHHHHhC--CChhHHHHHHHHHHHhhcCcHHHHHHHHhcCHHHHHHHHHhhHHH
Q psy3680 269 ENRPAVSNLITLHALCT-NQLPQDICTQVKH--LNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVLLDGSIR 343 (422)
Q Consensus 269 ~~~p~~~~l~~~~~~~t-~~~~eei~~~~~~--~~~~dlK~~Lae~i~~~l~pir~~~~~l~~~~~~l~~iL~~Ga~k 343 (422)
+++|++||+|.||.+|+ +++.+++++.|.+ ++++++|+.|++.|+++|.|+|+||+++++++++++++|++|++|
T Consensus 237 ~g~Pe~~~l~~~~~~~~~~~~~~ei~~~~~~G~~~~ge~K~~lae~i~~fL~~iqer~~~~~~~~~~l~~il~~g~~k 314 (314)
T COG0180 237 GGKPEVCNLFEIYSAFFEDDSILEIEAEYRGGELGCGECKKELAEAIQEFLKPIQERREELREDPAYLDDILRKGAEK 314 (314)
T ss_pred CCCCCcchHHHHHHHhcCCCcHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHhccCCC
Confidence 78999999999999999 8899999999985 999999999999999999999999999999999999999999864
No 8
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=100.00 E-value=6e-85 Score=654.44 Aligned_cols=320 Identities=32% Similarity=0.445 Sum_probs=301.7
Q ss_pred CcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeec-cCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q psy3680 35 PQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSIT-IKQKHKDLKENIQLMAASLLACGIDPQKSILF 113 (422)
Q Consensus 35 ~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt-~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~ 113 (422)
+.+|||||+|||.+|||||+|++++|+++|++|+ ++|+||||||+| ++.+++++++++++++++|+|+|+||+|++||
T Consensus 2 ~~~v~sG~~PTG~~HLGn~l~~~~~~~~lQ~~~~-~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~ 80 (333)
T PRK12282 2 KPIILTGDRPTGKLHLGHYVGSLKNRVALQNEHE-QFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIF 80 (333)
T ss_pred CCEEEEeeCCCCcchHHHHHHHHHHHHHHHhCCC-EEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEE
Confidence 3589999999999999999999999999999985 999999999999 47899999999999999999999999999999
Q ss_pred EcCCCcchhHHHHHHhhccchhhhhcchhHHHHhhhc---CCCCccchhhHHHhhhhhhccCccEEeecCchhHHHHHHH
Q psy3680 114 QQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAEL---KQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLAN 190 (422)
Q Consensus 114 ~qSdi~e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~---~~~~~gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hielaR 190 (422)
+||+|++|.++.|+++|++++++|+|+++||++.... +++++|+|+||+||||||++|++|+||||.||+||+|++|
T Consensus 81 ~qS~~~e~~~l~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~~g~l~YP~lqaaDIl~~~~d~vpvG~DQ~~h~~laR 160 (333)
T PRK12282 81 IQSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQAADITAFKATLVPVGDDQLPMIEQTR 160 (333)
T ss_pred ECCcchHHHHHHHHHHhhchHHHHhhchHHHHHHhccCCCCCCcchhhcchHHHHHHHHhhCCCEEEeccccHHHHHHHH
Confidence 9999999999999999999999999999999875432 5689999999999999999999999999999999999999
Q ss_pred HHHHHhccccC-ccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHHHHhhhhccCCCCccccCCC
Q psy3680 191 HLTQLFNNKFD-KIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPE 269 (422)
Q Consensus 191 dia~r~n~~~g-~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~A~tD~~~~~~~~p~ 269 (422)
|+|+|||+.|| ++|+.|+++++ .+++||||++ ++|||||++| +|+|+|+|++|++||++|+||+.+ +.++++
T Consensus 161 diA~~~n~~~~~~~~~~p~~~~~--~~~~i~~L~g-~~KMSKS~~~---~I~L~D~pe~I~kKI~~A~td~~~-~~~~~~ 233 (333)
T PRK12282 161 EIVRRFNSLYGTDVLVEPEALLP--EAGRLPGLDG-KAKMSKSLGN---AIYLSDDADTIKKKVMSMYTDPNH-IRVEDP 233 (333)
T ss_pred HHHHHHhhhcCCccccCchhccc--CCCcccCCCC-CCcCCCCCCC---eeeeeCCHHHHHHHHHhCcCCCCC-ccCCCC
Confidence 99999999999 89999999985 4899999964 5899999975 999999999999999999999854 577888
Q ss_pred CCcchhhHHHHHHhc--CCCCHHHHHHHHh--CCChhHHHHHHHHHHHhhcCcHHHHHHHHhcCHHHHHHHHHhhHHHHH
Q psy3680 270 NRPAVSNLITLHALC--TNQLPQDICTQVK--HLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVLLDGSIRAQ 345 (422)
Q Consensus 270 ~~p~~~~l~~~~~~~--t~~~~eei~~~~~--~~~~~dlK~~Lae~i~~~l~pir~~~~~l~~~~~~l~~iL~~Ga~kAr 345 (422)
++|+++|+++|++.| ++.++++++++|. +++++++|++|++.|+++|.|+|++|+++++|+++|++||+.|++|||
T Consensus 234 ~~~~~~~l~~~~~~f~~~~~~~e~l~~~y~~g~~~~~dlK~~lae~i~~~l~pirer~~~~~~~~~~~~~vl~~G~~ka~ 313 (333)
T PRK12282 234 GKVEGNVVFTYLDAFDPDKAEVAELKAHYQRGGLGDVKCKRYLEEVLQELLAPIRERRAEFAKDPGYVLEILKAGSEKAR 313 (333)
T ss_pred CCCCcChHHHHHHHhCCCCchHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 999999999999999 4788999999997 489999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccC
Q psy3680 346 AIAVETWDEVKSAAVGG 362 (422)
Q Consensus 346 ~iA~~tl~~vr~avgl~ 362 (422)
++|++||++||++||++
T Consensus 314 ~~A~~~~~~v~~~~g~~ 330 (333)
T PRK12282 314 EVAAQTLSEVKDAMGLN 330 (333)
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 99999999999999986
No 9
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=100.00 E-value=7.2e-84 Score=646.05 Aligned_cols=319 Identities=38% Similarity=0.602 Sum_probs=295.5
Q ss_pred CCcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCC--CHHHHHHHHHHHHHHHHHcCCCCCceE
Q psy3680 34 FPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQ--KHKDLKENIQLMAASLLACGIDPQKSI 111 (422)
Q Consensus 34 ~~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~--~~~~i~~~~~~i~a~~lA~Gldp~k~~ 111 (422)
++.++||||+|||.+|||||+|+++.|..+ ++|++++|+||||||+|... +++.++.++++++++|+|||+||+|++
T Consensus 1 ~~~~v~~G~~PTG~~HlG~~l~~~~~~~~~-q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~ 79 (328)
T TIGR00233 1 KKFRVLTGIQPSGKMHLGHYLGAIQTKWLQ-QFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTF 79 (328)
T ss_pred CCCEEEEeeCCCcHhHHHHHHHHHHHHHHH-hCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheE
Confidence 467999999999999999999999988765 67899999999999999655 899999999999999999999999999
Q ss_pred EEEcCCCcchhHHHHHHhhccchhhhhcchhHHHHhhhcCCCCccchhhHHHhhhhhhccCccEEeecCchhHHHHHHHH
Q psy3680 112 LFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANH 191 (422)
Q Consensus 112 i~~qSdi~e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~~~~~~gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hielaRd 191 (422)
||+||+|++|+++.|.|+|++|+++|+|+++||++.. .+++++|+|+||+||||||+++++|+||||.||+||+|||||
T Consensus 80 if~qS~~~e~~el~~~l~~~~t~~~l~r~~~~k~k~~-~~~~~~g~l~YP~lqaaDil~~~~d~vpvG~DQ~~h~elaRd 158 (328)
T TIGR00233 80 IFLQSDYPEHYELAWLLSCQVTFGELKRMTQFKDKSQ-AENVPIGLFSYPVLQAADILLYQADLVPVGIDQDQHLELTRD 158 (328)
T ss_pred EEEcCCcHHHHHHHHHHHccCCHHHHHhccCcchhcc-CCCCCchhhcchHHHHhhhhhcCCCeeecccccHHHHHHHHH
Confidence 9999999999999999999999999999999999862 367899999999999999999999999999999999999999
Q ss_pred HHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHHHHhhhhccCCCCccccCCCCC
Q psy3680 192 LTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENR 271 (422)
Q Consensus 192 ia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~A~tD~~~~~~~~p~~~ 271 (422)
+|+|||+.||++|++|++++. ...+.||||+| +|||||++| |+|+|+|+|++|++||++|+||+.+.+.+++..+
T Consensus 159 ia~r~n~~~~~~f~~P~~l~~-~~~~~l~gl~~--~KMSKS~~~--s~I~L~D~~e~I~~KI~~a~td~~~~~~~~~~~~ 233 (328)
T TIGR00233 159 LAERFNKKFKNFFPKPESLIS-KFFPRLMGLSG--KKMSKSDPN--SAIFLTDTPKQIKKKIRKAATDGGRVTLFEHREK 233 (328)
T ss_pred HHHHhhhhcCcccCCChhhhc-cccCCCCCCCC--CcCCCCCCC--CeEeecCCHHHHHHHHHhcCCCCCCCcccCcCCC
Confidence 999999999999999999995 35788999864 799999987 8999999999999999999999987788999899
Q ss_pred cchhhHHHHHHhcCC-----CCHHHHHHHHh--CCChhHHHHHHHHHHHhhcCcHHHHHHHHhcCHHHHHHHHHhhHHHH
Q psy3680 272 PAVSNLITLHALCTN-----QLPQDICTQVK--HLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVLLDGSIRA 344 (422)
Q Consensus 272 p~~~~l~~~~~~~t~-----~~~eei~~~~~--~~~~~dlK~~Lae~i~~~l~pir~~~~~l~~~~~~l~~iL~~Ga~kA 344 (422)
|+++|+..+|..+++ .++++++++|. +++|++||++|++.|+++|+|+|++|+++++| +|+++|..|+++|
T Consensus 234 ~g~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lK~~lae~i~~~l~pirer~~~~~~~--~~~~~l~~g~~~a 311 (328)
T TIGR00233 234 GGVPNLLVIYQYLSFFLIDDDKLKEIYEKYKSGKLLYGELKKALIEVLQEFLKEIQERRAEIAEE--ILDKILEPGAKKA 311 (328)
T ss_pred CCCchHHHHHHHhhccCCCcchHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 998888877777653 34788988885 48999999999999999999999999999977 9999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy3680 345 QAIAVETWDEVKSAAVG 361 (422)
Q Consensus 345 r~iA~~tl~~vr~avgl 361 (422)
|++|++||++||+++|+
T Consensus 312 ~~~a~~~l~~v~~~~g~ 328 (328)
T TIGR00233 312 RETANKTLADVYKAMGL 328 (328)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 99999999999999985
No 10
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=100.00 E-value=3.1e-73 Score=558.51 Aligned_cols=275 Identities=42% Similarity=0.688 Sum_probs=259.3
Q ss_pred EEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCC-CHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q psy3680 37 RIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQ-KHKDLKENIQLMAASLLACGIDPQKSILFQQ 115 (422)
Q Consensus 37 ~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~-~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~q 115 (422)
++||||+|||.+|||||+|++++|+++|++|++++++|||+||+|.+. +++++++++++++++|+|+|+||++++||+|
T Consensus 1 ~i~tG~~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~q 80 (280)
T cd00806 1 RVLSGIQPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQ 80 (280)
T ss_pred CEEEeeCCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEc
Confidence 589999999999999999999999999999999999999999999665 9999999999999999999999999999999
Q ss_pred CCCcchhHHHHHHhhccchhhhhcchhHHHHhhhcCCCCccchhhHHHhhhhhhccCccEEeecCchhHHHHHHHHHHHH
Q psy3680 116 SQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQL 195 (422)
Q Consensus 116 Sdi~e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~~~~~~gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hielaRdia~r 195 (422)
|++++|.++.|+++|.+++++|+|+++||+|.+..+++++|+|+||+||||||+++++|+||||.||+||+|++||+|+|
T Consensus 81 S~~~~~~~l~~~l~~~~~~~~l~r~~~fk~~~~~~~~~~~g~~~YP~lqaaDil~~~~~~vpvG~DQ~~h~~l~Rdia~r 160 (280)
T cd00806 81 SDVPEHYELAWLLSCVVTFGELERMTGFKDKSAQGESVNIGLLTYPVLQAADILLYKACLVPVGIDQDPHLELTRDIARR 160 (280)
T ss_pred CCcHHHHHHHHHHhCcCCHHHHHhccchhhhhccCCCCcchhhcchHHHHhhhhhccCCEEeeccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988766789999999999999999999999999999999999999999999
Q ss_pred hccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHHHHhhhhccCCCCccccCCCCCcchh
Q psy3680 196 FNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVS 275 (422)
Q Consensus 196 ~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~A~tD~~~~~~~~p~~~p~~~ 275 (422)
||+.||++|++|++++. .+++||||+|+++|||||+++ |+|+|+|+|++|++||++|+||+.+.+.+++..+|+++
T Consensus 161 ~n~~~~~~~~~P~~l~~--~~~~i~~l~g~~~KMSKS~~~--~~I~L~d~~~~i~~KI~~a~td~~~~~~~~~~~~~~~~ 236 (280)
T cd00806 161 FNKLYGEIFPKPAALLS--KGAFLPGLQGPSKKMSKSDPN--NAIFLTDSPKEIKKKIMKAATDGGRTEHRRDGGGPGVS 236 (280)
T ss_pred hccccccccCCCeeecc--CCCccccCCCCCCcccCCCCC--CeEEeeCCHHHHHHHHHhccCCCCCceecCCCCCCCcC
Confidence 99999999999999983 379999999877899999984 69999999999999999999999776678888999999
Q ss_pred hHHHHHHhcCCCCHHHHH--HHHh--CCChhHHHHHHHHHHHhh
Q psy3680 276 NLITLHALCTNQLPQDIC--TQVK--HLNTGQYKLLLADVLVEK 315 (422)
Q Consensus 276 ~l~~~~~~~t~~~~eei~--~~~~--~~~~~dlK~~Lae~i~~~ 315 (422)
|++.||..|++.+.++++ ++|. +++++++|+.|++.|+++
T Consensus 237 ~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~K~~lae~i~~~ 280 (280)
T cd00806 237 NLVEIYSAFFNDDDEELEEIDEYRSGGLGYGECKKLLAEAIQEF 280 (280)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhC
Confidence 999999999999888888 5564 699999999999999864
No 11
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.7e-72 Score=564.73 Aligned_cols=310 Identities=24% Similarity=0.314 Sum_probs=282.1
Q ss_pred HHHhhhhcccchhhhhhhhcc-ccCCCcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeecc-CCCHH
Q psy3680 10 LTHMKKFVNSSGQQIRHYSDH-KISFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITI-KQKHK 87 (422)
Q Consensus 10 ~~~~~~~~~~~~~~i~~~~~~-~~~~~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~-~~~~~ 87 (422)
|..++|.+..++++++.+++. +.+++.++|||++|||.+|||||++ +.+|++||+.|++++|+|||+||++. ..+++
T Consensus 40 h~~~rR~~~~~hrd~d~il~~~~~~~~~~iytG~~PSG~lHLGh~~~-~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e 118 (368)
T PRK12285 40 HPLMRRGIIFGHRDYDKILEAYRNGKPFAVYTGFMPSGPMHIGHKMV-FDELKWHQEFGANVYIPIADDEAYAARGLSWE 118 (368)
T ss_pred chHHhcCeeeecCCHHHHHHHHhcCCCeEEEEccCCCCCccHHHHHH-HHHHHHHHhcCCCEEEEecchHHHhcCCCCHH
Confidence 889999999999988877765 5688999999999999999999997 78999999999999999999999995 78999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEEcCCCcchhHHHHHHhhccchhhhhcchhHHHHhhhcCCCCccchhhHHHhhhh
Q psy3680 88 DLKENIQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGLFLYPVLQAAD 167 (422)
Q Consensus 88 ~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~~~~~~gl~~YPvLqAaD 167 (422)
++++++++++++|+|+|+||+|+.||+||+++++.++.|.++|.+|+++|+|+.+++ ++.++|+++||+|||||
T Consensus 119 ~~~~~~~~~~~~~lA~G~Dp~k~~i~~qS~~~~~~~l~~~l~~~~t~~~l~r~~~f~------~~~~~g~~~YP~lQaAD 192 (368)
T PRK12285 119 ETREWAYEYILDLIALGFDPDKTEIYFQSENIKVYDLAFELAKKVNFSELKAIYGFT------GETNIGHIFYPATQAAD 192 (368)
T ss_pred HHHHHHHHHHHHHHHhCCCccceEEEECCchHHHHHHHHHHHhhCcHHHHHHhhCCC------CCCchhhhhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998886 46899999999999999
Q ss_pred hhc------cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEe
Q psy3680 168 ILL------YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIE 241 (422)
Q Consensus 168 il~------~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~ 241 (422)
|++ +++++||||.||+||+|+|||+|+|||+.|| |++|.+++ ++++|||+| +|||||+++ |+|+
T Consensus 193 il~~~~~~~~~~~lvPvG~DQ~~h~~ltRdiA~r~n~~~g--f~~P~~l~----~~~lpgL~G--~KMSkS~~~--s~I~ 262 (368)
T PRK12285 193 ILHPQLEEGPKPTLVPVGIDQDPHIRLTRDIAERLHGGYG--FIKPSSTY----HKFMPGLTG--GKMSSSKPE--SAIY 262 (368)
T ss_pred HHhhcccccCCceEEEeccchHHHHHHHHHHHHHHhhhcC--CCCchhHh----hhcccCCCC--CcCCCCCCC--Ceee
Confidence 999 8889999999999999999999999999999 88999988 689999975 699999986 8999
Q ss_pred ccCCHHHHHHHhhhhccCCCCcccc--CCCCCcchhhHHHHHHhcC---CCCHHHHHHHHh--CCChhHHHHHHHHHHHh
Q psy3680 242 ITDPPEVIVRKCKKALTDCTSAVTY--DPENRPAVSNLITLHALCT---NQLPQDICTQVK--HLNTGQYKLLLADVLVE 314 (422)
Q Consensus 242 L~Dsp~~I~kKI~~A~tD~~~~~~~--~p~~~p~~~~l~~~~~~~t---~~~~eei~~~~~--~~~~~dlK~~Lae~i~~ 314 (422)
|+|+|++|++||++|+||+...++. +.+++|+++++++|+..|. +.++++++++|. +++++++|+.|++.|++
T Consensus 263 L~D~p~~I~kKI~kA~Td~~~t~~~~~~~~g~p~~~~v~~~l~~~~~~~d~~~eei~~~y~~g~~~~g~~K~~lae~i~~ 342 (368)
T PRK12285 263 LTDDPETVKKKIMKALTGGRATLEEQRKLGGEPDECVVYELLLYHLEEDDKELKEIYEECRSGELLCGECKKEAAEKIAE 342 (368)
T ss_pred ccCCHHHHHHHHHhCcCCCCcccccccccCCCCCcchHHHHHHHHhcCCCccHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998764332 2346788999999999886 468999999996 38999999999999999
Q ss_pred hcCcHHHHHHHHhcCHHHHHHHHHh
Q psy3680 315 KFKPIRDEIEYLMKSKEHLEKVLLD 339 (422)
Q Consensus 315 ~l~pir~~~~~l~~~~~~l~~iL~~ 339 (422)
+|+|+|++++++.+ .|++.+..
T Consensus 343 ~l~~~~er~~~~~~---~~~~~~~~ 364 (368)
T PRK12285 343 FLKEHQEKREEARE---ILEKYLYD 364 (368)
T ss_pred HHHHHHHHHHHHHH---HHHHhhcc
Confidence 99999999998754 56665544
No 12
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=8.6e-69 Score=537.98 Aligned_cols=291 Identities=22% Similarity=0.313 Sum_probs=253.7
Q ss_pred hHHHHHhhhhcccchhhhhhhhccccCCCcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeecc-CCC
Q psy3680 7 HLLLTHMKKFVNSSGQQIRHYSDHKISFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITI-KQK 85 (422)
Q Consensus 7 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~-~~~ 85 (422)
+++.+.....+++ +.|+.++ ++++++++|+||+|||.+|||||++ +++|+++|++|++++|+|||+||++. +.+
T Consensus 6 ~~~~~~~~e~~~~--~el~~~l--~~~~~~~v~~G~~PTG~lHLG~~~~-~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~ 80 (329)
T PRK08560 6 ELITRNTEEVVTE--EELRELL--ESKEEPKAYIGFEPSGKIHLGHLLT-MNKLADLQKAGFKVTVLLADWHAYLNDKGD 80 (329)
T ss_pred HHHHhCceeecCH--HHHHHHH--hCCCCCEEEEccCCCCcchhhhhHH-HHHHHHHHHCCCeEEEEEccchhhcCCCCC
Confidence 4444544444443 5777777 4578999999999999999999875 78899999999999999999999995 579
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCcchhH---HHHHHhhccchhhhhcchhHHHHhhhcCCCCccchhhHH
Q psy3680 86 HKDLKENIQLMAASLLACGIDPQKSILFQQSQVPEHTQ---LAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGLFLYPV 162 (422)
Q Consensus 86 ~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~e~~e---l~w~l~~~~~~~~l~r~~~~K~k~~~~~~~~~gl~~YPv 162 (422)
++++++++++++++|+|+|+||++++||+||+|+++.+ +.|.++|.+++++|+|+.+++.+.. ++.++|+|+||+
T Consensus 81 ~~~i~~~~~~~~~~~~A~G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~~~~~~l~r~~~~~~~~~--~~~~~g~l~YP~ 158 (329)
T PRK08560 81 LEEIRKVAEYNKKVFEALGLDPDKTEFVLGSEFQLDKEYWLLVLKLAKNTTLARARRSMTIMGRRM--EEPDVSKLVYPL 158 (329)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhheEEEecchhhccchHHHHHHHHHhhccHHHHHHhhhhhcccC--CCCCHHHHHHHH
Confidence 99999999999999999999999999999999998875 4455999999999999999986532 346999999999
Q ss_pred HhhhhhhccCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEec
Q psy3680 163 LQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEI 242 (422)
Q Consensus 163 LqAaDil~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L 242 (422)
||||||+++++|+||||.||+||+++|||+|+|||+. .|.++. +++||||+|+++|||||+++ |+|+|
T Consensus 159 lqaaDil~~~ad~vpvG~DQ~~h~~l~Rdia~~~n~~------~p~~l~----~~~l~~L~g~~~KMSKS~p~--~~I~L 226 (329)
T PRK08560 159 MQVADIFYLDVDIAVGGMDQRKIHMLAREVLPKLGYK------KPVCIH----TPLLTGLDGGGIKMSKSKPG--SAIFV 226 (329)
T ss_pred HHHHHHHHhCCCEEEechhHHHHHHHHHHhhHhcCCC------CceEEE----cCccCCCCCCCCCCcCCCCC--Ceecc
Confidence 9999999999999999999999999999999999953 677765 88999998876799999965 79999
Q ss_pred cCCHHHHHHHhhhhccCCCCccccCCCCCcchhhHHHHHHhcCC--------------------CCHHHHHHHHh--CCC
Q psy3680 243 TDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSNLITLHALCTN--------------------QLPQDICTQVK--HLN 300 (422)
Q Consensus 243 ~Dsp~~I~kKI~~A~tD~~~~~~~~p~~~p~~~~l~~~~~~~t~--------------------~~~eei~~~~~--~~~ 300 (422)
+|+|++|++||++|+||+. +++.++++.|++.+.. .++++++++|. +++
T Consensus 227 ~D~~~~I~~KI~kA~t~~~---------~~~~n~v~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~eel~~~y~~g~l~ 297 (329)
T PRK08560 227 HDSPEEIRRKIKKAYCPPG---------EVEGNPVLEIAKYHIFPRYDPFVIERPEKYGGDLEYESYEELERDYAEGKLH 297 (329)
T ss_pred cCCHHHHHHHHHhccCCCC---------CcCCCcHHHHHHHHhhccccceEEechhhcCCCCCcCCHHHHHHHHHcCCCC
Confidence 9999999999999999973 2455668888877642 57899999997 378
Q ss_pred hhHHHHHHHHHHHhhcCcHHHHHHH
Q psy3680 301 TGQYKLLLADVLVEKFKPIRDEIEY 325 (422)
Q Consensus 301 ~~dlK~~Lae~i~~~l~pir~~~~~ 325 (422)
|+++|++|+++|+++|.|+|++|++
T Consensus 298 ~~~lK~~la~~i~~~l~pir~~~~~ 322 (329)
T PRK08560 298 PMDLKNAVAEYLIEILEPVREYLEE 322 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999974
No 13
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.2e-67 Score=533.85 Aligned_cols=291 Identities=22% Similarity=0.309 Sum_probs=248.6
Q ss_pred HHHHHhhhhcccchhhhhhhhccccCCCcEEEEeecCCCccchhhHHHHHH--HHHHHHHcCCcEEEEeeCceeecc-C-
Q psy3680 8 LLLTHMKKFVNSSGQQIRHYSDHKISFPQRIFSGIQPTGTLHLGNYFGAVQ--TWSALQNKGEDVIFCIVDLHSITI-K- 83 (422)
Q Consensus 8 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~tGi~PTG~lHLGny~g~i~--~~~~lq~~g~~~~ilIaD~hAlt~-~- 83 (422)
++.+.....+ +.+.|+.++ +.+++++||+||+|||.+|||| |+++ +|++||++|++++|+||||||+++ +
T Consensus 43 ~i~r~~~e~i--~~eel~~~l--~~~~~~~v~~G~~PTG~lHLG~--g~i~~~~~~~lq~~G~~v~~~IaD~hA~~~~~~ 116 (383)
T PTZ00126 43 LCLSIGEECI--QPEELRELL--KLKERPICYDGFEPSGRMHIAQ--GILKAINVNKLTKAGCVFVFWVADWFALLNNKM 116 (383)
T ss_pred HHhcCceeec--CHHHHHHHH--hcCCCCEEEEEECCCCcccccc--hHhHhHHHHHHHhCCCeEEEEEccceeecCCCC
Confidence 4444444444 456777777 4678899999999999999999 4444 899999999999999999999994 4
Q ss_pred -CCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCC-CcchhHHHHHHhhc----cchhhhhcchhHHHHhhhcCCCCccc
Q psy3680 84 -QKHKDLKENIQLMAASLLACGIDPQKSILFQQSQ-VPEHTQLAWVLTCL----CTVNRLNHMPTYVEKCAELKQSPTGL 157 (422)
Q Consensus 84 -~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSd-i~e~~el~w~l~~~----~~~~~l~r~~~~K~k~~~~~~~~~gl 157 (422)
.+++++++++.++++.|+|+|+||+|++||+||+ +++|.+++|.+.|. +++++|.|++++++|.. .++.++|+
T Consensus 117 g~~l~~i~~~~~~~~~~~~A~GlDp~k~~i~~qS~~v~~~~~l~w~~~~~la~~~tl~r~~r~~~~~~r~~-~~~~~~g~ 195 (383)
T PTZ00126 117 GGDLEKIRKVGEYFIEVWKAAGMDMDNVRFLWASEEINKNPNDYWLRVMDIARSFNITRIKRCSQIMGRSE-GDEQPCAQ 195 (383)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccceEEEECChhhhhhhHHHHHHHHHHhccCCHHHHHhhhhhhcccc-CCCCCchh
Confidence 6999999999999999999999999999999998 68999999997764 59999999999987754 24578999
Q ss_pred hhhHHHhhhhhhccCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCC
Q psy3680 158 FLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSN 237 (422)
Q Consensus 158 ~~YPvLqAaDil~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~ 237 (422)
|+||+||||||+++++|+||||.||+||+++|||+|++||+.+ .|..+ .+++||||+||++|||||++|
T Consensus 196 l~YP~LQaaDil~l~adivpvG~DQ~~~~~LaRdia~~~~~~~-----~~~~~----~~~~lpgL~dg~~KMSKS~~n-- 264 (383)
T PTZ00126 196 ILYPCMQCADIFYLKADICQLGMDQRKVNMLAREYCDKKKIKK-----KPIIL----SHHMLPGLLEGQEKMSKSDPN-- 264 (383)
T ss_pred hhhhHHHhhhhhccCCCEEEeCccHHHHHHHHHHHHHHhCCCC-----Cceee----cccccccCCCCCCCCCcCCCC--
Confidence 9999999999999999999999999999999999999999642 23332 479999998777899999987
Q ss_pred CcEeccCCHHHHHHHhhhhccCCCCccccCCCCCcchhhHHHHHHhc--------------------CCCCHHHHHHHHh
Q psy3680 238 SKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSNLITLHALC--------------------TNQLPQDICTQVK 297 (422)
Q Consensus 238 s~I~L~Dsp~~I~kKI~~A~tD~~~~~~~~p~~~p~~~~l~~~~~~~--------------------t~~~~eei~~~~~ 297 (422)
++|+|+|+|++|++||++|+||+.. ++.++++.|+..+ ++.++++++++|.
T Consensus 265 s~I~L~Dspe~I~kKI~kA~t~p~~---------~~~npv~~~~~~~~~~~~~~~~I~r~~k~gg~~~~~~~eel~~~y~ 335 (383)
T PTZ00126 265 SAIFMEDSEEDVNRKIKKAYCPPGV---------IEGNPILAYFKSIVFPAFNSFTVLRKEKNGGDVTYTTYEELEKDYL 335 (383)
T ss_pred CeecCCCCHHHHHHHHHhCcCCCCC---------CCCCcchhhhhhcccccccceeEeccccccCccCcCCHHHHHHHHh
Confidence 7999999999999999999999732 2233456665542 2358999999997
Q ss_pred --CCChhHHHHHHHHHHHhhcCcHHHHHHH
Q psy3680 298 --HLNTGQYKLLLADVLVEKFKPIRDEIEY 325 (422)
Q Consensus 298 --~~~~~dlK~~Lae~i~~~l~pir~~~~~ 325 (422)
+++|+++|++||++|+++|.|||++|+.
T Consensus 336 ~g~l~p~dlK~~lae~i~~~L~PIRe~~~~ 365 (383)
T PTZ00126 336 SGALHPGDLKPALAKYLNLMLQPVRDHFQN 365 (383)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4899999999999999999999999963
No 14
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-61 Score=519.77 Aligned_cols=290 Identities=22% Similarity=0.317 Sum_probs=246.7
Q ss_pred hhhhhhhhccccCCCcEEEEeecCCCccchhh-HHHHHHHHHHHHHcCCcEEEEeeCceeecc---CCCHHHHHHHHHHH
Q psy3680 21 GQQIRHYSDHKISFPQRIFSGIQPTGTLHLGN-YFGAVQTWSALQNKGEDVIFCIVDLHSITI---KQKHKDLKENIQLM 96 (422)
Q Consensus 21 ~~~i~~~~~~~~~~~~~i~tGi~PTG~lHLGn-y~g~i~~~~~lq~~g~~~~ilIaD~hAlt~---~~~~~~i~~~~~~i 96 (422)
.+.|+.++ ++++++++|+||+|||.+|||| ++++++.|+ ++++|++++||||||||+|+ +.++++++.++.++
T Consensus 20 ~eeL~~ll--~~~~~~rv~sGi~PTG~lHLGng~~~aik~~~-~~q~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~ 96 (682)
T PTZ00348 20 ESELRNLI--EKKPLIRCYDGFEPSGRMHIAQGIFKAVNVNK-CTQAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYL 96 (682)
T ss_pred HHHHHHHH--hcCCCCEEEEeeCCCCcCeeccHHHHHHHHHH-HHhCCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHH
Confidence 46788887 4667889999999999999999 566666555 45678999999999999994 34899999989999
Q ss_pred HHHHHHcCCCCCceEEEEcCC-CcchhHHHHHHhhccchhhhhcchhHHHHhh---h-cCCCCccchhhHHHhhhhhhcc
Q psy3680 97 AASLLACGIDPQKSILFQQSQ-VPEHTQLAWVLTCLCTVNRLNHMPTYVEKCA---E-LKQSPTGLFLYPVLQAADILLY 171 (422)
Q Consensus 97 ~a~~lA~Gldp~k~~i~~qSd-i~e~~el~w~l~~~~~~~~l~r~~~~K~k~~---~-~~~~~~gl~~YPvLqAaDil~~ 171 (422)
+++|+|+|+||+|++||+||+ +++|++++|.+ .++++++.+++++|++.. . ..++++|+++||+||||||+++
T Consensus 97 ~~~~lA~GlDpeK~~~~~qSd~i~e~~el~w~l--v~~v~~l~t~~q~K~~~~~~g~~~~~i~~gll~YPvLQAADIl~l 174 (682)
T PTZ00348 97 IEVWKAAGMDMDKVLFLWSSEEITNHANTYWRT--VLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYPLMQCADIFFL 174 (682)
T ss_pred HHHHHHcCCCccceEEEECcHhhhhhhHHHHHH--HHHHHHHhhHHHHHHHHHhhcccCCCCchHHHhhhHHHhhccccc
Confidence 999999999999999999998 89999999998 588999999999998643 1 2358999999999999999999
Q ss_pred CccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHHH
Q psy3680 172 KATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVR 251 (422)
Q Consensus 172 ~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~k 251 (422)
++|+||||.||+||+|+|||+|+++|+. |.+++ ..+++||||+||++|||||++| |+|+|+|+|++|++
T Consensus 175 ~adivpvG~DQ~qh~eLaRdia~~~g~~-------~kpvi--l~~~~LpGL~gg~~KMSKS~p~--naI~L~Dspe~I~k 243 (682)
T PTZ00348 175 KADICQLGLDQRKVNMLAREYCDLIGRK-------LKPVI--LSHHMLAGLKQGQAKMSKSDPD--SAIFMEDTEEDVAR 243 (682)
T ss_pred CCCEEEeCccHHHHHHHHHHHHHHhCCC-------CCcee--cccccCcCCCCCCCcCCCCCCC--CeecccCCHHHHHH
Confidence 9999999999999999999999999953 22333 1379999998777899999975 79999999999999
Q ss_pred HhhhhccCCCC--ccccCCCCCc----chhhHHHHHHhcCC--------------CCHHHHHHHHh--CCChhHHHHHHH
Q psy3680 252 KCKKALTDCTS--AVTYDPENRP----AVSNLITLHALCTN--------------QLPQDICTQVK--HLNTGQYKLLLA 309 (422)
Q Consensus 252 KI~~A~tD~~~--~~~~~p~~~p----~~~~l~~~~~~~t~--------------~~~eei~~~~~--~~~~~dlK~~La 309 (422)
||++|+||+.+ .+..+..++| +.++++.|++.+.+ .++++++++|. +++|++||++|+
T Consensus 244 KI~kA~td~~~~~~~~~~d~g~p~~~~e~npvl~i~~~~if~~~g~~~~i~~~~~~~~eele~~y~~g~l~~~dlK~~la 323 (682)
T PTZ00348 244 KIRQAYCPRVKQSASEITDDGAPVATDDRNPVLDYFQCVVYARPGAVATIDGTTYATYEDLEQAFVSDEVSEEALKSCLI 323 (682)
T ss_pred HHHhCCCCCCcCcccccCCCCCccccCCCCcHHHHHHHHhccccchhcccCCcccCcHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999853 1222222555 67899999887732 57899999996 489999999999
Q ss_pred HHHHhhcCcHHHHHHHH
Q psy3680 310 DVLVEKFKPIRDEIEYL 326 (422)
Q Consensus 310 e~i~~~l~pir~~~~~l 326 (422)
++|+++|+|+|++|++.
T Consensus 324 e~l~~~L~PIRe~~~~~ 340 (682)
T PTZ00348 324 DEVNALLEPVRQHFASN 340 (682)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 99999999999999743
No 15
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=3e-60 Score=464.88 Aligned_cols=246 Identities=29% Similarity=0.391 Sum_probs=223.9
Q ss_pred EEEEeecCCC-ccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeecc-CC---------CHHHHHHHHHHHHHHHHHcCC
Q psy3680 37 RIFSGIQPTG-TLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITI-KQ---------KHKDLKENIQLMAASLLACGI 105 (422)
Q Consensus 37 ~i~tGi~PTG-~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~-~~---------~~~~i~~~~~~i~a~~lA~Gl 105 (422)
.||+||+||| ++|||||+| +.+|+++|++|++++++|||+||++. +. +++++++|+.+++++|+|+|+
T Consensus 1 ~iy~G~~PTg~~lHlGh~~~-l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~ 79 (273)
T cd00395 1 TLYCGIDPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGI 79 (273)
T ss_pred CeEEeEcCCCCCccHHHHHH-HHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3899999999 899999999 89999999999999999999999994 42 899999999999999999999
Q ss_pred C--CCceEEEEcCCCc---chhHHHHHHhhccchhhhhcchhHHHHhhhcCCCCccchhhHHHhhhhhhccCc----cEE
Q psy3680 106 D--PQKSILFQQSQVP---EHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGLFLYPVLQAADILLYKA----THI 176 (422)
Q Consensus 106 d--p~k~~i~~qSdi~---e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~~~~~~gl~~YPvLqAaDil~~~a----~~v 176 (422)
| |++++||+||+|+ ++.++.|.++|++++++|.|+++||+|.+ +++++|+|+||+||||||+++++ ++|
T Consensus 80 d~~p~k~~i~~ns~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~k~r~~--~~~~~~~~~Yp~lQaaD~l~l~~~~~~~~v 157 (273)
T cd00395 80 FEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKTSFQSRSE--EGISATEFTYPPLQAADFLLLNTTEGCDIQ 157 (273)
T ss_pred cCCCcceEEEEccccCCcccHHHHHHHHHccCcHHHHHhChHHHHHhc--CCCCchhhhhHHHHHHHHHHHhcccCCcEE
Confidence 9 9999999999999 89999999999999999999999999884 67999999999999999999877 999
Q ss_pred eecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEe---ccCCHHHHHHHh
Q psy3680 177 PAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIE---ITDPPEVIVRKC 253 (422)
Q Consensus 177 pvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~---L~Dsp~~I~kKI 253 (422)
|||.||+||+++|||+|+|+|. |+.|..++ .++||+|+| .|||||++| +|| +.|+|++|++||
T Consensus 158 p~G~DQ~~~i~l~rdla~r~n~-----~~~p~~l~----~p~l~~l~G--~KMSKS~~~---~i~l~~~~dsp~~i~~ki 223 (273)
T cd00395 158 PGGSDQWGNITLGRELARRFNG-----FTIAEGLT----IPLVTKLDG--PKFGKSESG---PKWLDTEKTSPYEFYQFW 223 (273)
T ss_pred EecHHHHHHHHHHHHHHHHhCC-----CCCCeEEe----eccccCCCC--CcCCCCCCC---CccccccCCCHHHHHHHH
Confidence 9999999999999999999983 56788877 689999974 599999987 655 579999999999
Q ss_pred hhhccCCCCccccCCCCCcchhhHHHHHHhcCCCCHHHHHH----HHhCCChhHHHHHHHHHHHhh
Q psy3680 254 KKALTDCTSAVTYDPENRPAVSNLITLHALCTNQLPQDICT----QVKHLNTGQYKLLLADVLVEK 315 (422)
Q Consensus 254 ~~A~tD~~~~~~~~p~~~p~~~~l~~~~~~~t~~~~eei~~----~~~~~~~~dlK~~Lae~i~~~ 315 (422)
++|+ | ++++.|++.|++.+.+|+++ .+++.+++++|+.||+.|+++
T Consensus 224 ~~a~-d---------------~~v~~~~~~~t~~~~~ei~~i~~~~~~~~~~~~~K~~La~~i~~~ 273 (273)
T cd00395 224 INAV-D---------------SDVINILKYFTFLSKEEIERLEQEQYEAPGYRVAQKTLAEEVTKT 273 (273)
T ss_pred Hccc-H---------------hHHHHHHHHHcCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 9985 2 36889999999988888887 556778899999999999863
No 16
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=1.7e-60 Score=465.93 Aligned_cols=251 Identities=24% Similarity=0.242 Sum_probs=225.2
Q ss_pred cEEEEeecCCC-ccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeec-cC---------CCHHHHHHHHHHHHHHHHHcC
Q psy3680 36 QRIFSGIQPTG-TLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSIT-IK---------QKHKDLKENIQLMAASLLACG 104 (422)
Q Consensus 36 ~~i~tGi~PTG-~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt-~~---------~~~~~i~~~~~~i~a~~lA~G 104 (422)
.+||+||+||| ++|||||+++ .+|+++|++|++++++|||+||++ ++ .++++|++|+.+++++|+|+|
T Consensus 1 ~~iy~G~~PTg~~lHLG~~~~~-~~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g 79 (269)
T cd00805 1 LKVYIGFDPTAPSLHLGHLVPL-MKLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAIL 79 (269)
T ss_pred CeEEEeeCCCCCcccHHHHHHH-HHHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 37999999999 9999999985 689999999999999999999999 56 699999999999999999999
Q ss_pred CC--CCceEEEEcCCCcchhHHHHH----HhhccchhhhhcchhHHHHhhhcCCCCccchhhHHHhhhhhhccCccEEee
Q psy3680 105 ID--PQKSILFQQSQVPEHTQLAWV----LTCLCTVNRLNHMPTYVEKCAELKQSPTGLFLYPVLQAADILLYKATHIPA 178 (422)
Q Consensus 105 ld--p~k~~i~~qSdi~e~~el~w~----l~~~~~~~~l~r~~~~K~k~~~~~~~~~gl~~YPvLqAaDil~~~a~~vpv 178 (422)
+| |++++||+||+|+++ ++|+ ++|++++++|.|++++|+|.+..+++++|+|+||+||||||+++++|+|||
T Consensus 80 ~~~~p~k~~i~~~s~~~~~--l~~~~~l~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~~~YP~lQaaDi~~l~~~l~~~ 157 (269)
T cd00805 80 DFIPPEKAKFVNNSDWLLS--LYTLDFLRLGKHFTVNRMLRRDAVKVRLEEEEGISFSEFIYPLLQAYDFVYLDVDLQLG 157 (269)
T ss_pred ccCCCcceEEEEchHhhcc--CCHHHHHHHHhhCcHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhHHHHhCCeeEe
Confidence 96 999999999999998 6666 999999999999999999986557899999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHHHHhhhhcc
Q psy3680 179 GLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALT 258 (422)
Q Consensus 179 G~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~A~t 258 (422)
|.||++|+++|||+|+|||.. .|..+ .+++||+++ |+|||||++|.-+ |++.|+|++|++||++|+|
T Consensus 158 G~DQ~~~i~~~rd~a~r~~~~------~~~~l----~~~ll~~l~--G~KMSKS~~~~~~-i~l~dsp~~i~~Ki~~a~~ 224 (269)
T cd00805 158 GSDQRGNITLGRDLIRKLGYK------KVVGL----TTPLLTGLD--GGKMSKSEGNAIW-DPVLDSPYDVYQKIRNAFD 224 (269)
T ss_pred cHHHHHHHHHHHHHHHHhCCC------CcEEE----eeccccCCC--CCcccCCCCCccc-ccCCCCHHHHHHHHHcCCc
Confidence 999999999999999999842 23333 378889996 3699999998222 6999999999999999988
Q ss_pred CCCCccccCCCCCcchhhHHHHHHhcCCCCHHHHHHHHh-CCChhHHHHHHHHHHHhh
Q psy3680 259 DCTSAVTYDPENRPAVSNLITLHALCTNQLPQDICTQVK-HLNTGQYKLLLADVLVEK 315 (422)
Q Consensus 259 D~~~~~~~~p~~~p~~~~l~~~~~~~t~~~~eei~~~~~-~~~~~dlK~~Lae~i~~~ 315 (422)
| ++++++.++.+++..+++|++++|. +..++++|++||++|+++
T Consensus 225 ~-------------~v~~~l~~~~~~~~~~~eel~~~~~~~~~~~~~K~~la~~i~~l 269 (269)
T cd00805 225 P-------------DVLEFLKLFTFLDYEEIEELEEEHAEGPLPRDAKKALAEELTKL 269 (269)
T ss_pred H-------------HHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 7 3678999999888889999999997 434999999999999863
No 17
>PLN02486 aminoacyl-tRNA ligase
Probab=100.00 E-value=9.2e-60 Score=478.47 Aligned_cols=304 Identities=19% Similarity=0.243 Sum_probs=257.1
Q ss_pred ccchhHHHHHhhhhcccchhhhhhhhcc-ccCCCcEEEEeecCCC-ccchhhHHHHHHHHHHHHHc-CCcEEEEeeCcee
Q psy3680 3 RFKAHLLLTHMKKFVNSSGQQIRHYSDH-KISFPQRIFSGIQPTG-TLHLGNYFGAVQTWSALQNK-GEDVIFCIVDLHS 79 (422)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~i~tGi~PTG-~lHLGny~g~i~~~~~lq~~-g~~~~ilIaD~hA 79 (422)
++||+..|..|+|.+..+++++...+++ +.+++.++|||++||| ++||||+++++ ...+||++ |+.++|+|||.|+
T Consensus 40 ~~~~~~~h~~lrRgi~~~hrd~~~~l~~~e~~~~~~vYtG~~PSg~~lHlGHlv~~~-~~~~lQ~~~~~~~~I~iaD~e~ 118 (383)
T PLN02486 40 RLTGRPAHPFLRRGVFFAHRDLEEILDAYEKGEKFYLYTGRGPSSEALHLGHLIPFM-FTKYLQDAFKVPLVIQLTDDEK 118 (383)
T ss_pred HhcCCCCCcccccceeeeccCHHHHHHHHhcCCCeEEEeCCCCCCccccHHHHHHHH-HHHHHHHhCCCeEEEEecCHHH
Confidence 5678888999999999999998877765 6788999999999999 79999999964 56689998 6899999999998
Q ss_pred ec-cCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCcchhHHHHH----HhhccchhhhhcchhHHHHhhhcCCCC
Q psy3680 80 IT-IKQKHKDLKENIQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWV----LTCLCTVNRLNHMPTYVEKCAELKQSP 154 (422)
Q Consensus 80 lt-~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~e~~el~w~----l~~~~~~~~l~r~~~~K~k~~~~~~~~ 154 (422)
.+ +..+++++++++++++++|+|+|+||+|++||.|++|. .++.|. ++..++++++.+...+ .++.+
T Consensus 119 ~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt~I~s~~~~~--~~~~~~~~~~l~r~~t~~~~~~~~gf------~~~~~ 190 (383)
T PLN02486 119 FLWKNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDYV--GGAFYKNMVKIAKCVTLNQVRGIFGF------SGEDN 190 (383)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEeccHHH--hHhHHHHHHHHHhhCcHHHHHHhhCc------CCCCC
Confidence 88 57899999999999999999999999999999777653 333332 4555565555432221 14578
Q ss_pred ccchhhHHHhhhhhh------ccCc-----cEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCC
Q psy3680 155 TGLFLYPVLQAADIL------LYKA-----THIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLK 223 (422)
Q Consensus 155 ~gl~~YPvLqAaDil------~~~a-----~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~ 223 (422)
+|+++||+||||||+ .++. ++||||.||+||+++|||+|+|||+. +|..++ ++++|+|+
T Consensus 191 ig~~~YP~lQaadi~~~~~~~l~~~~~~~~~lVPvG~DQd~~~~ltRdia~r~~~~------kp~~~~----~~~lp~L~ 260 (383)
T PLN02486 191 IGKISFPAVQAAPSFPSSFPHLFGGKDKLRCLIPCAIDQDPYFRMTRDVAPRLGYY------KPALIE----SRFFPALQ 260 (383)
T ss_pred chhhhhHHHHHhhhhhhccHHHhCCCcCCcceeecccchHHHHHHHHHHHHHhCCC------Ccceec----cccccCCC
Confidence 999999999999998 4555 89999999999999999999999953 675554 78999999
Q ss_pred CCCcccccCCCCCCCcEeccCCHHHHHHHhhh-hccCCCCccc--cCCCCCcchhhHHHHHHhcCC--CCHHHHHHHHh-
Q psy3680 224 DPSKKMSKSDLDSNSKIEITDPPEVIVRKCKK-ALTDCTSAVT--YDPENRPAVSNLITLHALCTN--QLPQDICTQVK- 297 (422)
Q Consensus 224 ~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~-A~tD~~~~~~--~~p~~~p~~~~l~~~~~~~t~--~~~eei~~~~~- 297 (422)
|+.+|||||++| ++|+|+|+|++|++||++ |+||++..++ .+.+++|+++++++|+.+|.. .+++++.++|.
T Consensus 261 g~~~KMSkS~~n--saI~L~D~p~~i~~KI~k~A~t~~~~t~~~~~~~gg~p~v~~~~~~l~~f~~dd~~~eei~~~y~~ 338 (383)
T PLN02486 261 GESGKMSASDPN--SAIYVTDTPKEIKNKINKYAFSGGQDTVEEHRELGANLEVDIPWKYLNFFLEDDAELERIKKEYGS 338 (383)
T ss_pred CCCCcCcCcCCC--CeeeccCCHHHHHHHHhcCCCCCCCCcccccccCCCCCccchHHHHHHHHcCCchHHHHHHHHhcc
Confidence 877899999987 899999999999999999 9999865332 233467899999999999964 57899999996
Q ss_pred -CCChhHHHHHHHHHHHhhcCcHHHHHHHHh
Q psy3680 298 -HLNTGQYKLLLADVLVEKFKPIRDEIEYLM 327 (422)
Q Consensus 298 -~~~~~dlK~~Lae~i~~~l~pir~~~~~l~ 327 (422)
+++++++|+.|++.|+++|+|+|++++++.
T Consensus 339 G~l~~ge~K~~lae~i~~~l~~~qerr~~~~ 369 (383)
T PLN02486 339 GRMLTGEVKKRLIEVLTEIVERHQRARAAVT 369 (383)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999998875
No 18
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=100.00 E-value=1.9e-59 Score=463.18 Aligned_cols=276 Identities=36% Similarity=0.524 Sum_probs=240.1
Q ss_pred cCCCcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeecc-CC--CHHHHHHHHHHHHHH--HHHcCCC
Q psy3680 32 ISFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITI-KQ--KHKDLKENIQLMAAS--LLACGID 106 (422)
Q Consensus 32 ~~~~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~-~~--~~~~i~~~~~~i~a~--~lA~Gld 106 (422)
+++++++|+||+|||.+||||+++ +.++++||++|++++++|||+||++. +. +++.++.+..++.+. |+|+|+|
T Consensus 2 ~~~~~~~y~G~~PTg~lHlG~l~~-~~~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d 80 (292)
T PF00579_consen 2 ENKPFRVYTGIDPTGDLHLGHLVP-IMKLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLD 80 (292)
T ss_dssp THSSEEEEEEEESSSS-BHHHHHH-HHHHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSH
T ss_pred CCCCcEEEEeECCCCcccchHHHH-HHHHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccC
Confidence 568899999999999999996665 78999999999999999999999994 33 699999999999999 9999999
Q ss_pred CCceEEEEcCCCcchhHHHHHHhhccchhhhhcchhHHH---HhhhcCCCCccchhhHHHhhhhhhccCccEEeecCchh
Q psy3680 107 PQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVE---KCAELKQSPTGLFLYPVLQAADILLYKATHIPAGLDQI 183 (422)
Q Consensus 107 p~k~~i~~qSdi~e~~el~w~l~~~~~~~~l~r~~~~K~---k~~~~~~~~~gl~~YPvLqAaDil~~~a~~vpvG~DQ~ 183 (422)
|+++.||+||+|+++.++.|++.++.+.++++|+.++++ ++...+++++|+|+||+||||||+++++|+||||.||+
T Consensus 81 ~~k~~i~~~s~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaaD~~~l~~~~~~~G~DQ~ 160 (292)
T PF00579_consen 81 PEKTEIFRQSDWPEHMELWWFLSDVARLFSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAADILLLKADLVPGGIDQR 160 (292)
T ss_dssp TTTEEEEEGHHHHCHHHHHHHHHHHHBHHHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHHHHHHTTHSEEEEEGGGH
T ss_pred ccceEEEeCCCcccccchhhhhcccccccchhhhhhhcccccccccccCcceeeEEcccccccceeeeccccccccchHH
Confidence 999999999999999999999999999888888887776 34333579999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHHHHhhhhccCCCCc
Q psy3680 184 HNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSA 263 (422)
Q Consensus 184 ~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~A~tD~~~~ 263 (422)
+|+++|||+|+|+|+. ..|+.|..++ ++++|+|+| .+|||||++| ++|||+|++++|++||++|+||+...
T Consensus 161 ~~~~l~rd~a~k~~~~--~~~~~p~~l~----~~~l~~l~G-~~KMSKS~~n--s~I~L~d~~~~i~~Ki~~a~~~~~~~ 231 (292)
T PF00579_consen 161 GHIELARDLARKFNYK--EIFPKPAGLT----SPLLPGLDG-QKKMSKSDPN--SAIFLDDSPEEIRKKIKKAFCDPDRE 231 (292)
T ss_dssp HHHHHHHHHHHHHTHH--STSSS-EEEE----ETCBBSTTS-SSBTTTTTTG--GS-BTTTTHHHHHHHHHHSHTSTTSH
T ss_pred HHHHHHHHHHhhhccc--ccccCchhee----eccccccCC-ccccCccCCc--cEEEEeccchhHHHHHHHHhhCCCcc
Confidence 9999999999999987 6788999887 779999964 4599999998 89999999999999999999999764
Q ss_pred cccCCCCCcchhh-HHHHHHhcCC----CCHHHHHHHHh--CCChhHHHHHHHHHHHhhcC
Q psy3680 264 VTYDPENRPAVSN-LITLHALCTN----QLPQDICTQVK--HLNTGQYKLLLADVLVEKFK 317 (422)
Q Consensus 264 ~~~~p~~~p~~~~-l~~~~~~~t~----~~~eei~~~~~--~~~~~dlK~~Lae~i~~~l~ 317 (422)
++.....++.+++ ++.++..+.. .+++++.++|. .++++++|++++++++++|+
T Consensus 232 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~K~~~~e~~~~~le 292 (292)
T PF00579_consen 232 NPRLLKGRPFISPFLIERLEAFHGNDDYRSLEELLADYVSGELHPGDLKKALAEALNEFLE 292 (292)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHESHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHccCCcChHHHHHHHHHHHHHhhC
Confidence 4433335567777 7888777643 35789999997 37999999999999999873
No 19
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.9e-56 Score=459.80 Aligned_cols=283 Identities=21% Similarity=0.243 Sum_probs=241.5
Q ss_pred HHHHhh-hhcccchh---hhhhhhccccCCCcEEEEeecCCC-ccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeec-c
Q psy3680 9 LLTHMK-KFVNSSGQ---QIRHYSDHKISFPQRIFSGIQPTG-TLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSIT-I 82 (422)
Q Consensus 9 ~~~~~~-~~~~~~~~---~i~~~~~~~~~~~~~i~tGi~PTG-~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt-~ 82 (422)
++..++ |.+.+... .+++.+ ++++.++|+||+||| ++|||||++ +.+|++||++|++++++|||+||++ |
T Consensus 6 ~l~~l~~Rg~~~~~~~~~~l~~~l---~~~~~~vy~G~dPTg~slHlGhlv~-l~~l~~lQ~~G~~~~~ligd~ta~igD 81 (408)
T PRK05912 6 LLEELKERGLIEQITDEEELEEKL---AKEPLRIYLGFDPTAPSLHLGHLVP-LLKLRRFQDAGHKPIALIGGFTGMIGD 81 (408)
T ss_pred HHHHHHhCCCeeecCCHHHHHHHh---hCCCCEEEEeecCCCCCccHHhHHH-HHHHHHHHHCCCcEEEEEcCceeEcCC
Confidence 445555 66666555 455555 468899999999999 799999997 7899999999999999999999999 5
Q ss_pred CC---------CHHHHHHHHHHHHHHHHHcCCCCCc--eEEEEcCCCcchhHHHHHHh---hccchhhhhcchhHHHHhh
Q psy3680 83 KQ---------KHKDLKENIQLMAASLLACGIDPQK--SILFQQSQVPEHTQLAWVLT---CLCTVNRLNHMPTYVEKCA 148 (422)
Q Consensus 83 ~~---------~~~~i~~~~~~i~a~~lA~Gldp~k--~~i~~qSdi~e~~el~w~l~---~~~~~~~l~r~~~~K~k~~ 148 (422)
|. +.+.+++|+..+..++ |+|+||++ ++||+||+|+++.++.|++. +++++++|.++.+||.|..
T Consensus 82 psgk~~~r~~l~~e~i~~n~~~i~~ql-~~~ld~~k~~~~i~~nsd~~~~~~~~~~l~~v~~~~~v~~m~~~~~~k~r~~ 160 (408)
T PRK05912 82 PSGKSETRKLLTREQVAENAETIKEQL-FKFLDFEKDGAEIVNNSDWLGKLNAIDFLRDLGKHFTVNRMLERDDFKKRLR 160 (408)
T ss_pred CCCCchhhccCCHHHHHHHHHHHHHHH-HHhcCcCcCcEEEEECCCcCCcccHHHHHHHHhhhccHHHHhhcchHHHHhc
Confidence 53 6788999998876655 99999999 99999999999999999865 8999999999999999885
Q ss_pred hcCCCCccchhhHHHhhhhhhcc----CccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCC
Q psy3680 149 ELKQSPTGLFLYPVLQAADILLY----KATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKD 224 (422)
Q Consensus 149 ~~~~~~~gl~~YPvLqAaDil~~----~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~ 224 (422)
...++++|+|+||+||||||+++ +|++||||+|||+|+++|||+|+|+|+. +...+ ..|.||+++
T Consensus 161 ~~~~is~~ef~Yp~LQa~D~l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~-------~~~~l---~~plL~~~~- 229 (408)
T PRK05912 161 EGQGISFTEFLYPLLQGYDFVALNKRYGCDLQLGGSDQWGNILSGRDLQRRYGGK-------PQFGL---TMPLLTGLD- 229 (408)
T ss_pred cCCCCchhhhhhHHHHHhhHHHHhccCCCCEEeccHHHHHHHHHHHHHHHHhCCC-------CeEEE---ecCCcCCCC-
Confidence 44689999999999999999999 9999999999999999999999999853 21222 377889986
Q ss_pred CCcccccCCCCCCCcEeccC---CHHHHHHHhhhhccCCCCccccCCCCCcchhhHHHHHHhcCCCCHHHHHHHH-hCCC
Q psy3680 225 PSKKMSKSDLDSNSKIEITD---PPEVIVRKCKKALTDCTSAVTYDPENRPAVSNLITLHALCTNQLPQDICTQV-KHLN 300 (422)
Q Consensus 225 ~~~KMSKS~~n~~s~I~L~D---sp~~I~kKI~~A~tD~~~~~~~~p~~~p~~~~l~~~~~~~t~~~~eei~~~~-~~~~ 300 (422)
|+|||||++ |+|||+| +|+++++||+++ +| +++++++.+|..++..++++++++| .+.+
T Consensus 230 -G~KMsKS~~---naI~L~d~~tsp~~i~qki~~~-~D------------~~v~~~l~~~t~~~~~ei~~l~~~~~~g~~ 292 (408)
T PRK05912 230 -GKKMGKSEG---NAVWLDEEKTSPYEMYQKWMNI-SD------------ADVWRYLKLLTFLSLEEIEELEEELAEGPN 292 (408)
T ss_pred -CCcccCCCC---CceeCCCCCCCHHHHHHHHhcC-Ch------------HHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Confidence 389999985 4999999 999999999995 44 2567888888777778888898888 4679
Q ss_pred hhHHHHHHHHHHHhhcCcHHHHHH
Q psy3680 301 TGQYKLLLADVLVEKFKPIRDEIE 324 (422)
Q Consensus 301 ~~dlK~~Lae~i~~~l~pir~~~~ 324 (422)
++++|+.||++|++++++..+.-+
T Consensus 293 ~~~~Kk~LA~~v~~~lhg~~~~~~ 316 (408)
T PRK05912 293 PREAKKVLAEEITALVHGEEAAEA 316 (408)
T ss_pred hHHHHHHHHHHHHHHHCCHHHHHH
Confidence 999999999999999999766543
No 20
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.9e-53 Score=434.24 Aligned_cols=277 Identities=18% Similarity=0.184 Sum_probs=230.6
Q ss_pred hhcccchhhhhhhhc-cccCCCcEEEEeecCCC-ccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeec-cC--------
Q psy3680 15 KFVNSSGQQIRHYSD-HKISFPQRIFSGIQPTG-TLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSIT-IK-------- 83 (422)
Q Consensus 15 ~~~~~~~~~i~~~~~-~~~~~~~~i~tGi~PTG-~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt-~~-------- 83 (422)
|.+-+.....+.+.+ .+.+++.++|+||+||| ++||||+++ +.++.+||++||+++++|||+||++ ||
T Consensus 12 Rg~~~~~~~~~~l~~~~~~~~~~~iy~G~dPT~~sLHlGhlv~-l~~l~~lq~~G~~~~~ligd~ta~igDpsgk~~~R~ 90 (410)
T PRK13354 12 RGAINQETDEEKLRKSLKEGKPLTLYLGFDPTAPSLHIGHLVP-LMKLKRFQDAGHRPVILIGGFTGKIGDPSGKSKERK 90 (410)
T ss_pred cCCchhcCCHHHHHHHHhcCCCcEEEEcccCCCCCcchhhHHH-HHHHHHHHHcCCeEEEEEcccccccCCCCccccccc
Confidence 444444433333333 15788999999999999 799999887 6789999999999999999999999 55
Q ss_pred -CCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCcchhHHHHH---HhhccchhhhhcchhHHHHhhhcCCCCccchh
Q psy3680 84 -QKHKDLKENIQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWV---LTCLCTVNRLNHMPTYVEKCAELKQSPTGLFL 159 (422)
Q Consensus 84 -~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~e~~el~w~---l~~~~~~~~l~r~~~~K~k~~~~~~~~~gl~~ 159 (422)
.+.+++++|+..+.+++.+ |+||++++|++||+|+++.++.|+ ++.++++++|.+..+++.|.+..+++++++|+
T Consensus 91 ~l~~e~i~~n~~~i~~q~~~-~ld~~k~~i~~ns~w~~~~~~~~~l~~v~~~~tv~~m~~~~~~~~R~~~~~~is~~ef~ 169 (410)
T PRK13354 91 LLTDEQVQHNAKTYTEQIFK-LFDFEKTEIVNNSDWLSKLNLIDFLRDYGKHFTVNRMLERDDVKSRLEREQGISFTEFF 169 (410)
T ss_pred CCCHHHHHHHHHHHHHHHHH-hcCccceEEEECccccccccHHHHHHHHHhhccHHHHHhchHHHhhhccCCCCchhhhc
Confidence 4778999999999999876 999999999999999998777666 56899999999888899887555689999999
Q ss_pred hHHHhhhhhhcc----CccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCC
Q psy3680 160 YPVLQAADILLY----KATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLD 235 (422)
Q Consensus 160 YPvLqAaDil~~----~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n 235 (422)
||+||||||+++ +|++||||+|||+|++++||+|+|+|.. .|-.+ ..|.|++++| .|||||.+|
T Consensus 170 YpllQa~D~~~l~~~~~~~iq~gG~DQ~~ni~~grdl~~r~~~~------~~~~l----t~PlL~g~dG--~KMsKS~~n 237 (410)
T PRK13354 170 YPLLQAYDFVHLNRKEDVDLQIGGTDQWGNILMGRDLQRKLEGE------EQFGL----TMPLLEGADG--TKMGKSAGG 237 (410)
T ss_pred cHHHHhhhHHHHhccCCCCEEEecHHHHHHHHHHHHHHHHhCCC------CceEe----ccCCccCCCC--CccCCCCCC
Confidence 999999999999 9999999999999999999999999964 23222 3778889863 499999876
Q ss_pred CCCcEeccCC---HHHHHHHhhhhccCCCCccccCCCCCcchhhHHHHHHhcCC---CCHHHHHHHHh-CCChhHHHHHH
Q psy3680 236 SNSKIEITDP---PEVIVRKCKKALTDCTSAVTYDPENRPAVSNLITLHALCTN---QLPQDICTQVK-HLNTGQYKLLL 308 (422)
Q Consensus 236 ~~s~I~L~Ds---p~~I~kKI~~A~tD~~~~~~~~p~~~p~~~~l~~~~~~~t~---~~~eei~~~~~-~~~~~dlK~~L 308 (422)
+|||+|+ |+++++||+++ +|. .+++|+..|++ .+++++++.|. +.+++++|+.|
T Consensus 238 ---aI~L~d~~tsp~~i~qki~~~-~D~---------------~v~~~l~~~t~l~~~ei~~l~~~~~~~~~~~~~Kk~L 298 (410)
T PRK13354 238 ---AIWLDPEKTSPYEFYQFWMNI-DDR---------------DVVKYLKLFTDLSPDEIDELEAQLETEPNPRDAKKVL 298 (410)
T ss_pred ---ceeccCCCCCHHHHHHHHHcC-ChH---------------HHHHHHHHHhCCCHHHHHHHHHHHhcCCChHHHHHHH
Confidence 9999999 99999999996 442 34666666665 56667777776 45799999999
Q ss_pred HHHHHhhcCcHHHHHH
Q psy3680 309 ADVLVEKFKPIRDEIE 324 (422)
Q Consensus 309 ae~i~~~l~pir~~~~ 324 (422)
|++|++++++.++..+
T Consensus 299 A~~v~~~vhg~~~~~~ 314 (410)
T PRK13354 299 AEEITKFVHGEEAAEE 314 (410)
T ss_pred HHHHHHHHCCHHHHHH
Confidence 9999999999877654
No 21
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=100.00 E-value=2.9e-48 Score=395.44 Aligned_cols=250 Identities=20% Similarity=0.225 Sum_probs=204.6
Q ss_pred hhhhhhhccccCCCcEEEEeecCCC-ccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeec-cCC---------CHHHHH
Q psy3680 22 QQIRHYSDHKISFPQRIFSGIQPTG-TLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSIT-IKQ---------KHKDLK 90 (422)
Q Consensus 22 ~~i~~~~~~~~~~~~~i~tGi~PTG-~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt-~~~---------~~~~i~ 90 (422)
+.+++++ ++ ++++|+||+||| ++|||||++ +.++.+||++||+++++|||+||++ +|. +.++++
T Consensus 21 ~~l~~ll---~~-~~~vy~G~dPTg~~lHlGh~v~-l~~l~~lq~~G~~~~iligd~ta~igdpsg~~~~R~~~~~~~i~ 95 (377)
T TIGR00234 21 EELLKLL---ER-KIKLYVGFDPTAPSLHLGHLVP-LLKLRDFQQAGHEVIVLLGDATALIGDPSGKSEERKLLTREEVQ 95 (377)
T ss_pred HHHHHHh---cC-CCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEeccchhhcCCCChHHHhhcCCHHHHH
Confidence 3555555 33 899999999999 999999998 6789999999999999999999999 563 556666
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEEcCCCcc---hhHHHHHHhhccchhhhhcchhHHHHhhhcCCCCccchhhHHHhhhh
Q psy3680 91 ENIQLMAASLLACGIDPQKSILFQQSQVPE---HTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGLFLYPVLQAAD 167 (422)
Q Consensus 91 ~~~~~i~a~~lA~Gldp~k~~i~~qSdi~e---~~el~w~l~~~~~~~~l~r~~~~K~k~~~~~~~~~gl~~YPvLqAaD 167 (422)
+|+ +..+.++|+|+||++++|++||+|.. +.++.|.+++++++++|.|+.++|.|.+ +++++++|+||+|||||
T Consensus 96 ~n~-~~i~~~la~gld~~k~~iv~ns~w~~~~~~~~~l~~~~~~~tv~~m~~~~~~~~R~~--~~is~~ef~YpllQa~D 172 (377)
T TIGR00234 96 ENA-ENIKKQIARFLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRDAFSSRLE--RGISLSEFIYPLLQAYD 172 (377)
T ss_pred HHH-HHHHHHHHHhCChhheEEEECchhcCcCCHHHHHHHHhCceEHHHHHcccHHHHHHh--cCCCchhhhhHHHHHHH
Confidence 777 56777889999999999999999865 5666778999999999999999998875 46999999999999999
Q ss_pred hhccCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCC--
Q psy3680 168 ILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDP-- 245 (422)
Q Consensus 168 il~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Ds-- 245 (422)
|+++++|+||||+|||+||+.+||+|+++|.. ..|.+|.+++ ++++ +.|||||.+| +||++++
T Consensus 173 ~~~l~~di~~gG~DQ~~ni~~g~dLar~~~~~--~~~~~t~pLl--------~~~d--g~KmgKS~~~---~i~l~~~~~ 237 (377)
T TIGR00234 173 FVYLNVDLQIGGSDQWGNIRKGRDLIRRNLPS--LGFGLTVPLL--------TPAD--GEKMGKSGGG---AVSLDEGKY 237 (377)
T ss_pred HHHHcCCeeEecchhHHHHHHHHHHHHHhcCC--Cceeeceeee--------cCCC--CCCccCCCCC---cccCCccHh
Confidence 99999999999999999999999999999865 3455665555 4664 4799999764 6666655
Q ss_pred ---------HHHHHHHhhhhccCCCCccccCCCCCcchhhHHHHHHhcCCCCHHHHHHHHhCCChhHHHHHHHHHHHhhc
Q psy3680 246 ---------PEVIVRKCKKALTDCTSAVTYDPENRPAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKF 316 (422)
Q Consensus 246 ---------p~~I~kKI~~A~tD~~~~~~~~p~~~p~~~~l~~~~~~~t~~~~eei~~~~~~~~~~dlK~~Lae~i~~~l 316 (422)
|+++.+||++++||.. .++++++.+ .++.++..+|..||..|++.+
T Consensus 238 ~~~i~~~d~~D~~~~Ki~k~~t~~~------------------------~~ei~~l~~-~~~~~~~~~q~~la~ei~~~v 292 (377)
T TIGR00234 238 DFYQFWINTPDEDVKKILKLFTFLG------------------------LEEIEALVE-LKGPSPREVKENLAKEITKYV 292 (377)
T ss_pred hhhhhhcCCcHHHHHHHHHHcCCCc------------------------HHHHHHHHH-hcccCHHHHHHHHHHHHHHHh
Confidence 7777777777776641 112333322 345789999999999999999
Q ss_pred CcH
Q psy3680 317 KPI 319 (422)
Q Consensus 317 ~pi 319 (422)
+.-
T Consensus 293 hg~ 295 (377)
T TIGR00234 293 HGE 295 (377)
T ss_pred cCH
Confidence 984
No 22
>KOG2144|consensus
Probab=100.00 E-value=2.8e-45 Score=350.10 Aligned_cols=284 Identities=21% Similarity=0.222 Sum_probs=226.9
Q ss_pred hhhhhhhccccCCCcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccC--CCHHHHHHHHHH----
Q psy3680 22 QQIRHYSDHKISFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIK--QKHKDLKENIQL---- 95 (422)
Q Consensus 22 ~~i~~~~~~~~~~~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~--~~~~~i~~~~~~---- 95 (422)
+.|++++ ..+.+.+|+|+.|||+||+|.+++ |.+..+|..+||++.|++|||||++++ ...+.+..++.+
T Consensus 24 e~lk~iL---~er~l~~YwGtaptGrpHiay~vp-m~kiadflkAGC~VtIl~AD~hA~LdNmkap~e~~~~rv~yYe~~ 99 (360)
T KOG2144|consen 24 EELKNIL---AERALKCYWGTAPTGRPHIAYFVP-MMKIADFLKAGCEVTILFADLHAFLDNMKAPDELVIRRVGYYEKE 99 (360)
T ss_pred HHHHHHH---hccCceeeecCCCCCCcceeeeee-hhHHHHHHhcCCeEEEEehHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 4777888 458899999999999999999998 567999999999999999999999953 344445444433
Q ss_pred HHHHHHHcCCCCCceEEEEcCCCc---chhHHHHHHhhccchhhhhcchhHHHHhhhcCCCCccchhhHHHhhhhhhccC
Q psy3680 96 MAASLLACGIDPQKSILFQQSQVP---EHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGLFLYPVLQAADILLYK 172 (422)
Q Consensus 96 i~a~~lA~Gldp~k~~i~~qSdi~---e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~~~~~~gl~~YPvLqAaDil~~~ 172 (422)
|.+.+...+++.++..+...|++. ..+-..+.+++.++...+.++..-- ..+.+..+++.++||.|||+|+.+++
T Consensus 100 Ik~~l~~~nv~lEkL~fv~gs~yq~sk~ytld~~rl~~~~~~hdak~agaev--vkqve~plls~llYP~MQalDe~~L~ 177 (360)
T KOG2144|consen 100 IKAALGSINVPLEKLKFVKGSNYQLSKYYTLDMYRLSSNVTQHDAKKAGAEV--VKQVENPLLSGLLYPGMQALDEFYLE 177 (360)
T ss_pred HHHHHhhcCCcHHHHhhhcccccccCccchhhHHHHHhhccHhHHHHhhhhH--HHhhcchhhhhhhhhhHHHhhHHHHh
Confidence 333444457778888888888863 3455567788888877776664432 12236789999999999999999999
Q ss_pred ccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHHHH
Q psy3680 173 ATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRK 252 (422)
Q Consensus 173 a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~kK 252 (422)
+|++.+|.|||..+.+||++++.++++ +| ++ .+++++|||++ +.|||||+++ |+|+|.|+|++|.+|
T Consensus 178 vD~qfgGvDQRKIf~~A~eylp~l~yk------Kr--ih--LmnpMvPGL~q-~~KMSsSd~~--SkIdllD~~~~V~kK 244 (360)
T KOG2144|consen 178 VDAQFGGVDQRKIFVLAEEYLPDLGYK------KR--IH--LMNPMVPGLAQ-GEKMSSSDPL--SKIDLLDEPADVNKK 244 (360)
T ss_pred hhHHhcCccHHHHHHHHHHhhhhhCcc------cc--ee--ecCCCCccccc-cCccccCCcc--cccccccCHHHHHHH
Confidence 999999999999999999999999963 33 34 47999999986 5899999998 999999999999999
Q ss_pred hhhhccCCCCccccCCCCCcchhhHHHHHHhc---------------CCCCHHHHHHHHh--CCChhHHHHHHHHHHHhh
Q psy3680 253 CKKALTDCTSAVTYDPENRPAVSNLITLHALC---------------TNQLPQDICTQVK--HLNTGQYKLLLADVLVEK 315 (422)
Q Consensus 253 I~~A~tD~~~~~~~~p~~~p~~~~l~~~~~~~---------------t~~~~eei~~~~~--~~~~~dlK~~Lae~i~~~ 315 (422)
|++|||.+.+ ++.|+...--...+|.++..+ ++.+++|++++|+ .+||+|||..|+.+|+++
T Consensus 245 I~kAfCePg~-ve~Ng~L~fvkyvvfP~~~e~~~~~i~r~ek~GG~~tf~syed~e~~y~~~~lhPgDLK~~l~~alN~l 323 (360)
T KOG2144|consen 245 IKKAFCEPGN-VEGNGCLSFVKYVVFPIFEEFGVEVIDRPEKFGGNKTFKSYEDIEKDYEEGELHPGDLKKGLEKALNEL 323 (360)
T ss_pred HHHhcCCCCC-cCCCcHHHHHHHHHhhhHHhcCceeecchhhcCCcchhHHHHHHHHHHHhCCcChHHHHHHHHHHHHHH
Confidence 9999999843 445553222223445555443 3468999999997 599999999999999999
Q ss_pred cCcHHHHHHH
Q psy3680 316 FKPIRDEIEY 325 (422)
Q Consensus 316 l~pir~~~~~ 325 (422)
|.|||+.++.
T Consensus 324 L~~ir~~~~~ 333 (360)
T KOG2144|consen 324 LQPIREEFSN 333 (360)
T ss_pred HHHHHHHHhc
Confidence 9999998864
No 23
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.7e-42 Score=348.61 Aligned_cols=280 Identities=20% Similarity=0.187 Sum_probs=220.8
Q ss_pred hhhhhhhccccCCCcEEEEeecCCC-ccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeec-cC-CCHHHHHHHHH----
Q psy3680 22 QQIRHYSDHKISFPQRIFSGIQPTG-TLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSIT-IK-QKHKDLKENIQ---- 94 (422)
Q Consensus 22 ~~i~~~~~~~~~~~~~i~tGi~PTG-~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt-~~-~~~~~i~~~~~---- 94 (422)
+.+++++ ++.+.++|+|++||| ++||||+++ +.++.+||++||+++++|||+||++ || .+.++++..+.
T Consensus 22 e~l~~ll---~~~~~~~Y~GfDPTa~slHlGhlv~-l~kL~~fQ~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~v~ 97 (401)
T COG0162 22 EELRKLL---EEGPLRVYIGFDPTAPSLHLGHLVP-LMKLRRFQDAGHKPIVLIGDATAMIGDPSGKSEERKLLTRETVL 97 (401)
T ss_pred HHHHHHH---hcCCceEEEeeCCCCCccchhhHHH-HHHHHHHHHCCCeEEEEecccceecCCCCCCHHHHhhccHHHHH
Confidence 4666666 333999999999999 999999998 6789999999999999999999999 77 55555555542
Q ss_pred -HHHHHHHHcCCCCC-ceEEEEcCCCcchh---HHHHHHhhccchhhhhcchhHHHHhhhcCCCCccchhhHHHhhhhhh
Q psy3680 95 -LMAASLLACGIDPQ-KSILFQQSQVPEHT---QLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGLFLYPVLQAADIL 169 (422)
Q Consensus 95 -~i~a~~lA~Gldp~-k~~i~~qSdi~e~~---el~w~l~~~~~~~~l~r~~~~K~k~~~~~~~~~gl~~YPvLqAaDil 169 (422)
.+.....+.|.+++ ++.+++||+|.... +..-.++.++|+++|.++.+++.|.....++++.+|+||+|||+|++
T Consensus 98 ~n~~~i~~ql~~~ld~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~~~R~~~~~~is~~Ef~YpLmQayD~~ 177 (401)
T COG0162 98 ENAETIKKQLGKFLDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDVKKRLEREQGISFTEFNYPLLQAYDFV 177 (401)
T ss_pred HHHHHHHHHhcccCCcceEEEechHHhCcCCHHHHHHHHHhHccHHHHHHhhhHHHHhccCCCCchhhhhhHHHHHHHHH
Confidence 22223345676677 99999999996543 33344789999999999999999988666799999999999999999
Q ss_pred ccCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC---CH
Q psy3680 170 LYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD---PP 246 (422)
Q Consensus 170 ~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D---sp 246 (422)
++++|++.||+|||+||.+|||+++|++. ..+.++ .+|.|++++| .|||||.+| ++|+.. ||
T Consensus 178 ~L~~dlq~GG~DQ~~ni~~grdl~rr~g~------~~~~~l----t~PLL~~ldG--~KmgKs~~~---a~~~~s~~~Sp 242 (401)
T COG0162 178 YLNKDLQLGGSDQWGNILAGRDLIRRLGQ------KKVVGL----TTPLLTGLDG--KKMGKSEGG---AVWLDSEKTSP 242 (401)
T ss_pred HHccchhcCChHHHHHHHHHHHHHHHhCC------CCeEEE----EeccccCCCC--CcccccCCC---ceEccCCCCCc
Confidence 99999999999999999999999999885 234444 3899999963 499999887 899884 48
Q ss_pred HHHHHHhhhhccCCCCccccCCCCCcchhhHHHHHHhcCCCCHHHHHH---HHh-CCChhHHHHHHHHHHHhhcCcHHHH
Q psy3680 247 EVIVRKCKKALTDCTSAVTYDPENRPAVSNLITLHALCTNQLPQDICT---QVK-HLNTGQYKLLLADVLVEKFKPIRDE 322 (422)
Q Consensus 247 ~~I~kKI~~A~tD~~~~~~~~p~~~p~~~~l~~~~~~~t~~~~eei~~---~~~-~~~~~dlK~~Lae~i~~~l~pir~~ 322 (422)
.++++++++. .|. .+..|+..+|+.+.++|.+ ... +.++.++|+.||..++..+++-...
T Consensus 243 ~~~yq~~~~i-~D~---------------~~~~~~~~~t~l~~~eI~~i~~~~~~~~~~r~~k~~LA~e~~~~~hG~~~a 306 (401)
T COG0162 243 YDFYQYWMNI-EDA---------------DVKRFLKLLTFLSLEEIEEIEKYVLKGPEPREAKKLLAKEVTKLVHGEEAA 306 (401)
T ss_pred HhhhhcHhcC-cHH---------------HHHHHHHHhCcCChHHHHHHHHHhhcCCChHHHHHHHHHHhhHhhcCHHHH
Confidence 9999999995 321 3556666666655455544 333 3478899999999999999997776
Q ss_pred HHHHhcCHHHHHHHHHhh
Q psy3680 323 IEYLMKSKEHLEKVLLDG 340 (422)
Q Consensus 323 ~~~l~~~~~~l~~iL~~G 340 (422)
++.. +..+.+..+|
T Consensus 307 ~~a~----~~~~~~F~~g 320 (401)
T COG0162 307 EAAE----EEFEKLFSEG 320 (401)
T ss_pred HHHH----HHHHHHHhcC
Confidence 6543 2455555555
No 24
>KOG2145|consensus
Probab=100.00 E-value=1.1e-37 Score=298.08 Aligned_cols=306 Identities=19% Similarity=0.246 Sum_probs=260.7
Q ss_pred ccchhHHHHHhhhhcccchhhhhhhhcc-ccCCCcEEEEeecCCC-ccchhhHHHHHHHHHHHHHcC-CcEEEEeeCcee
Q psy3680 3 RFKAHLLLTHMKKFVNSSGQQIRHYSDH-KISFPQRIFSGIQPTG-TLHLGNYFGAVQTWSALQNKG-EDVIFCIVDLHS 79 (422)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~i~tGi~PTG-~lHLGny~g~i~~~~~lq~~g-~~~~ilIaD~hA 79 (422)
|+||+..|-.++|....|+++...+++. +.++|...|||..||. ++||||++|.|. ..+||+.. +..+|.+.|...
T Consensus 52 k~tg~~~h~flRrg~fFshRDf~~iLd~~eq~kpFyLYTGRGpSS~smHlGHliPFif-tKwlQe~F~vpLVIqlTDDEK 130 (397)
T KOG2145|consen 52 KLTGKPPHHFLRRGIFFSHRDFNLILDAYEQGKPFYLYTGRGPSSESMHLGHLIPFIF-TKWLQDVFDVPLVIQLTDDEK 130 (397)
T ss_pred HhcCCCchHHhhhcceeecccHHHHHHHHHcCCceEEEeCCCCCccccccccchhHHH-HHHHHHHhCCceEEEecccHH
Confidence 6899999999999999999998888877 7899999999999997 999999999775 34489964 788999999998
Q ss_pred ec-cCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCc---chhHHHHHHhhccchhhhhcchhHHHHhhhcCCCCc
Q psy3680 80 IT-IKQKHKDLKENIQLMAASLLACGIDPQKSILFQQSQVP---EHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPT 155 (422)
Q Consensus 80 lt-~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~---e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~~~~~~ 155 (422)
.+ +....++.++..++++.+++|+|+||.++.||.+.++. ...+-...++..++.++....-.|- ++-.+
T Consensus 131 flwK~l~~eda~~~arENaKDIia~GFDp~kTfIFsn~~y~g~~~fy~nivki~k~vt~nqa~~iFGF~------~sd~i 204 (397)
T KOG2145|consen 131 FLWKDLTLEDAKKYARENAKDIIAVGFDPKKTFIFSNLDYMGGPAFYENIVKISKCVTLNQAKAIFGFT------DSDCI 204 (397)
T ss_pred HHHhhCcHHHHHHHHHhcccceEEeccCCcceEEEechhhccCcHHHHHHHHHhheechhhheeeeccC------Ccccc
Confidence 88 67889999999999999999999999999999999964 3344445577777777655443332 56789
Q ss_pred cchhhHHHhhhhhhcc-----------CccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCC
Q psy3680 156 GLFLYPVLQAADILLY-----------KATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKD 224 (422)
Q Consensus 156 gl~~YPvLqAaDil~~-----------~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~ 224 (422)
|.+.+|..|||..+.- -.|++|+..||.+.+.|+||+|+|++ +++|..++ +..+|.|+|
T Consensus 205 gk~~Fpa~qaap~fssSFp~if~~~~~~~CLiPcAiDQDPyFRmtRDvA~rlg------~~Kpali~----stffpaLqG 274 (397)
T KOG2145|consen 205 GKIGFPAIQAAPSFSSSFPFIFGGRDDIPCLIPCAIDQDPYFRMTRDVAPRLG------YPKPALIH----STFFPALQG 274 (397)
T ss_pred ccccCchhhhcccccccchhhcCCCcCCceeceeeccCChHHHhhhhhhhhhC------CCCcceee----hhhchhhhC
Confidence 9999999999988762 15899999999999999999999998 45787776 778999999
Q ss_pred CCcccccCCCCCCCcEeccCCHHHHHHHhhh-hccCCCCccc--cCCCCCcchhhHHHHHHhcCC--CCHHHHHHHHh--
Q psy3680 225 PSKKMSKSDLDSNSKIEITDPPEVIVRKCKK-ALTDCTSAVT--YDPENRPAVSNLITLHALCTN--QLPQDICTQVK-- 297 (422)
Q Consensus 225 ~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~-A~tD~~~~~~--~~p~~~p~~~~l~~~~~~~t~--~~~eei~~~~~-- 297 (422)
...|||.|+|| ++|+|+|++++|++||.+ |++..+..++ -+.+++|++...++|+++|-+ ..+|++...|.
T Consensus 275 ~~~KMSASdpn--s~Ifltdt~~qIk~KI~~~afSGGr~tiEeHRe~GGn~dVDV~~~YLsFFldDD~kLeq~r~~Y~~G 352 (397)
T KOG2145|consen 275 AQTKMSASDPN--SAIFLTDTAKQIKNKINKYAFSGGRDTIEEHRELGGNPDVDVSFQYLSFFLDDDDKLEQIRKDYTSG 352 (397)
T ss_pred cccccccCCCC--ceEEecCcHHHHHHHHHHhhccCCcchHHHHHHhCCCCcceehHHHHHHHhccHHHHHHHHhhcccc
Confidence 89999999998 999999999999999999 8888765443 133467889999999999853 46888888886
Q ss_pred CCChhHHHHHHHHHHHhhcCcHHHHHHHHh
Q psy3680 298 HLNTGQYKLLLADVLVEKFKPIRDEIEYLM 327 (422)
Q Consensus 298 ~~~~~dlK~~Lae~i~~~l~pir~~~~~l~ 327 (422)
.+..|++|+.+.+.|.+++.-.|+++++..
T Consensus 353 ~mltgEmKk~~ievLq~~V~~hQa~Rk~Vt 382 (397)
T KOG2145|consen 353 EMLTGEMKKLCIEVLQEFVSRHQAARKEVT 382 (397)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 489999999999999999999999988765
No 25
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.2e-36 Score=322.77 Aligned_cols=231 Identities=16% Similarity=0.198 Sum_probs=194.9
Q ss_pred HcCCcEEEEeeCceeecc---CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCcc-hhHHHHH----Hhhccchhh
Q psy3680 65 NKGEDVIFCIVDLHSITI---KQKHKDLKENIQLMAASLLACGIDPQKSILFQQSQVPE-HTQLAWV----LTCLCTVNR 136 (422)
Q Consensus 65 ~~g~~~~ilIaD~hAlt~---~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~e-~~el~w~----l~~~~~~~~ 136 (422)
.+|+++++++|||||+++ .++.++|++..+++.+.|.|+|+|++ +.|+++||... +...+|. +++.++++|
T Consensus 405 ~~g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~-v~fv~~sd~~~~~~~~Yw~~v~~ia~~~tl~r 483 (682)
T PTZ00348 405 HSDGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSE-VKIVRENEVILGNPNDFWVSVIGIARKNLLSH 483 (682)
T ss_pred cCCCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCC-cEEEEchHhhhcCchhHHHHHHHHHHhccHHH
Confidence 369999999999999994 37999999999999999999999999 99999999643 3556776 688999999
Q ss_pred hhcchhHHHHhhhcCCCCccchhhHHHhhhhhhccCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCC
Q psy3680 137 LNHMPTYVEKCAELKQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESA 216 (422)
Q Consensus 137 l~r~~~~K~k~~~~~~~~~gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~ 216 (422)
+.|+.. .+..++|.++||+||++||+++++|++.+|+|||+.++||||++++.++ |.+. .+
T Consensus 484 ~~r~~g-------~~~~~~s~~iYP~MQ~~Di~~L~~di~~gG~DQRki~mlAre~~~~~~~--------~~~~----~~ 544 (682)
T PTZ00348 484 VEELYG-------GELRNAGQVIAALMRVATALMLSASHVISTSLDGGINEFAREYTKGRIE--------CIQA----LE 544 (682)
T ss_pred HHHHhc-------CCcccHHHHHHHHHHHHHHHhcCCCeeecChhHHHHHHHHHHhcccccc--------chhh----cC
Confidence 998662 2456999999999999999999999999999999999999999996543 3233 47
Q ss_pred cccccCCCCCcccccCCCCCCCcEeccCCHHHHHHHhhhhccCCCCccccCCCCCcchhhHHHHH----Hh---------
Q psy3680 217 GKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSNLITLH----AL--------- 283 (422)
Q Consensus 217 ~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~A~tD~~~~~~~~p~~~p~~~~l~~~~----~~--------- 283 (422)
.++|+|..|..+|++|.++ ++|+++|++++|++||++|||.+ . ++.||. ..++.|+ ..
T Consensus 545 ~~~p~l~~~~~~~~~~s~~--s~i~~~D~~~~i~~Ki~kA~Cpp-~-~~~Npv-----l~~~~y~~~~~~~~~i~R~e~~ 615 (682)
T PTZ00348 545 GRVPALHRPGAAPAVLGAD--DVLYLDDNDMDIRRKIKKAYSAP-N-EEANPV-----ISVAQHLLAQQGALSIERGEAN 615 (682)
T ss_pred CCCccccccccccCCCCCC--CeeeecCCHHHHHHHHHhCCCCC-C-CCCCcH-----HHHHHHHhcCCCeEEEeccccc
Confidence 8899998788899998654 89999999999999999999998 2 355662 2333333 11
Q ss_pred ---cCCCCHHHHHHHHh--CCChhHHHHHHHHHHHhhcCcHHHHHH
Q psy3680 284 ---CTNQLPQDICTQVK--HLNTGQYKLLLADVLVEKFKPIRDEIE 324 (422)
Q Consensus 284 ---~t~~~~eei~~~~~--~~~~~dlK~~Lae~i~~~l~pir~~~~ 324 (422)
.++.+++|++++|. .+||.|||.++++.|+++|+|+|+.++
T Consensus 616 Gg~~~y~s~eeL~~dy~~g~lhP~DLK~av~~~l~~~l~pvr~~~~ 661 (682)
T PTZ00348 616 GGNVAYNTPEALVADCGSGALHPADLKAAVSQLLLDRSAAARALLS 661 (682)
T ss_pred CCCeeeCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 13468999999997 499999999999999999999999984
No 26
>KOG2623|consensus
Probab=100.00 E-value=4.2e-35 Score=289.95 Aligned_cols=271 Identities=19% Similarity=0.192 Sum_probs=212.7
Q ss_pred CcEEEEeecCCC-ccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeec-cCC---------CHHHHHHHHHHHHHHHHH-
Q psy3680 35 PQRIFSGIQPTG-TLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSIT-IKQ---------KHKDLKENIQLMAASLLA- 102 (422)
Q Consensus 35 ~~~i~tGi~PTG-~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt-~~~---------~~~~i~~~~~~i~a~~lA- 102 (422)
|.+||+|++||+ ++|+||+++ +..++++|++||++|-+|++.+|.+ ||. +.+.++.|.+.+..++.+
T Consensus 63 p~~vYcGfDPTA~SLHvGNLl~-lm~L~hfqr~Gh~~ialIGgATa~vGDPSGrktER~~l~~d~~~~N~~~I~~ql~~i 141 (467)
T KOG2623|consen 63 PQYVYCGFDPTAESLHVGNLLA-LMVLIHFQRAGHRPIALIGGATASVGDPSGRKTERGQLAEDTREANSRSITQQLCKI 141 (467)
T ss_pred CceEEecCCCcHHhhhhcchHH-HHHHHHHHHcCCCceEEeccccccccCCCCCccchhhhhhHHHHHhHHHHHHHHHHH
Confidence 789999999999 999999997 5689999999999999999999999 653 445667777666665543
Q ss_pred ---------cCCCCCceEEEEcCCCcchhH-HHHH--HhhccchhhhhcchhHHHHhhhcCCCCccchhhHHHhhhhhhc
Q psy3680 103 ---------CGIDPQKSILFQQSQVPEHTQ-LAWV--LTCLCTVNRLNHMPTYVEKCAELKQSPTGLFLYPVLQAADILL 170 (422)
Q Consensus 103 ---------~Gldp~k~~i~~qSdi~e~~e-l~w~--l~~~~~~~~l~r~~~~K~k~~~~~~~~~gl~~YPvLqAaDil~ 170 (422)
+|..-.+.+|++||||.+... +.++ ++.++.+|.|.++.+++.|++.++++++.+|+|.+|||+|+++
T Consensus 142 f~n~~~~~~~~~s~g~~~ivnN~dW~~d~~llDFLa~vGrh~RvgsMLar~SV~~RLes~~GlSftEFtYQ~lQAYDfy~ 221 (467)
T KOG2623|consen 142 FENHPEYYRDGSSQGKYIIVNNSDWYKDIKLLDFLAEVGRHFRVGSMLARDSVKSRLESPNGLSFTEFTYQLLQAYDFYH 221 (467)
T ss_pred HhcChhhhcCCcccCceeEeechHHhhhchHHHHHHHhchhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHH
Confidence 233335789999999876544 4554 5679999999999999999999999999999999999999999
Q ss_pred ----cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC--
Q psy3680 171 ----YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD-- 244 (422)
Q Consensus 171 ----~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D-- 244 (422)
++|++|.||.|||+||+.+.|+++|+-..-+.+|.++.|+++ + ..|.|.+||.+| +|||+.
T Consensus 222 L~~~~g~~~QlGGsDQwGNitaG~dlI~ki~~~~~~vfGlT~PLlT--------s--stG~KlGKSaGn---AvWLdp~~ 288 (467)
T KOG2623|consen 222 LYENYGCRFQLGGSDQWGNITAGTDLIRKIMPIQAFVFGLTFPLLT--------S--STGAKLGKSAGN---AVWLDPSK 288 (467)
T ss_pred HHHhcCeeEEecccccccccchHHHHHHHhcccccceeeeeeeeEe--------c--CcchhhccCCCc---eEEecCcc
Confidence 599999999999999999999999985432355666666652 3 225899999997 999985
Q ss_pred -CHHHHHHHhhhhccCCCCccccCCCCCcchhhHHHHHHhcCCCCHHHHHH---HHh-CCChhHHHHHHHHHHHhhcCcH
Q psy3680 245 -PPEVIVRKCKKALTDCTSAVTYDPENRPAVSNLITLHALCTNQLPQDICT---QVK-HLNTGQYKLLLADVLVEKFKPI 319 (422)
Q Consensus 245 -sp~~I~kKI~~A~tD~~~~~~~~p~~~p~~~~l~~~~~~~t~~~~eei~~---~~~-~~~~~dlK~~Lae~i~~~l~pi 319 (422)
+|+.+++.+.++ .|. + +-.+++.||+.+.+||+. ++. +....-.++.||+.|++++|+-
T Consensus 289 tspy~lYQfF~~~-pDd------------~---v~k~LklfTfl~l~eI~~I~~~H~k~P~~r~aQ~~LA~eVTr~VHG~ 352 (467)
T KOG2623|consen 289 TSPYHLYQFFASL-PDD------------D---VEKFLKLFTFLPLEEIKQILEEHRKEPSQRIAQKLLAAEVTRMVHGK 352 (467)
T ss_pred CCcHHHHHHHHhC-chh------------H---HHHHHHHHhcCCHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHccc
Confidence 699999999996 332 2 344566666666666554 443 5677789999999999999994
Q ss_pred HHHHHHHhcCHHHHHHHHHhh
Q psy3680 320 RDEIEYLMKSKEHLEKVLLDG 340 (422)
Q Consensus 320 r~~~~~l~~~~~~l~~iL~~G 340 (422)
.. .+......++|..+
T Consensus 353 eg-----L~~A~r~T~al~g~ 368 (467)
T KOG2623|consen 353 EG-----LEVAERCTKALFGA 368 (467)
T ss_pred ch-----HHHHHHHHHHhhcc
Confidence 22 12233455555544
No 27
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.67 E-value=5.2e-16 Score=149.36 Aligned_cols=171 Identities=22% Similarity=0.257 Sum_probs=129.1
Q ss_pred ecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceE-------EEE
Q psy3680 42 IQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSI-------LFQ 114 (422)
Q Consensus 42 i~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~-------i~~ 114 (422)
=.|||.+||||+.+++.+|+..+..|...++-|.| ||+ .....+....+.+++...|+++++.. +|.
T Consensus 8 PsPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieD----td~--~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~~ 81 (239)
T cd00808 8 PSPTGFLHIGGARTALFNYLFARKHGGKFILRIED----TDQ--ERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPYR 81 (239)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECc----CCC--CCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCEe
Confidence 46899999999999999999999887777777999 432 33345666778888888999999843 899
Q ss_pred cCCCcchhHHHHHHhhccchhhhhcchhHHHHhhhc--CCCCccchhhHHHhhhhhhccCccEEeecCchhHHHHHHHHH
Q psy3680 115 QSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAEL--KQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHL 192 (422)
Q Consensus 115 qSdi~e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~--~~~~~gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hielaRdi 192 (422)
||+- .+.|++..++- .+ -|..+|++.++.|...+++++|+.|.|+..|....+.+
T Consensus 82 QS~r---------------------~~~y~~~~~~L~~~g--dg~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l 138 (239)
T cd00808 82 QSER---------------------LEIYRKYAEKLLEKG--DGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILL 138 (239)
T ss_pred eeCC---------------------HHHHHHHHHHHHHcC--CCCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHH
Confidence 9972 22233222111 12 38899999999999999999999999999999999999
Q ss_pred HHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEecc----CCHHHHHHHhhh
Q psy3680 193 TQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEIT----DPPEVIVRKCKK 255 (422)
Q Consensus 193 a~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~----Dsp~~I~kKI~~ 255 (422)
.+.+|. +.|... ..+.+++.+ +.||||+.++ .+|.-. -+|+.|...+..
T Consensus 139 ~~aLg~------~~p~~~----h~pll~~~~--g~KLSKR~~~--~~l~~lr~~G~~p~ai~~~l~~ 191 (239)
T cd00808 139 YEALGW------EPPKFA----HLPLILNPD--GKKLSKRKGD--TSISDYREEGYLPEALLNYLAL 191 (239)
T ss_pred HHHcCC------CCCceE----eeccccCCC--CCcccCCCCC--ccHHHHHHCCCCHHHHHHHHHH
Confidence 999983 345433 367777764 5799999986 344222 258888887776
No 28
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.49 E-value=2e-13 Score=121.18 Aligned_cols=63 Identities=37% Similarity=0.361 Sum_probs=53.5
Q ss_pred hHHHhhhhhhccCc---cEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCC
Q psy3680 160 YPVLQAADILLYKA---THIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSD 233 (422)
Q Consensus 160 YPvLqAaDil~~~a---~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~ 233 (422)
||+.|+||++.+.. +++++|.||++|++.+++++++++. ...|..+. .++|++.. ++|||||.
T Consensus 78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~-----~~~p~~~~----~~~l~~~~--g~KmSks~ 143 (143)
T cd00802 78 YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGG-----PARPFGLT----FGRVMGAD--GTKMSKSK 143 (143)
T ss_pred HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCC-----CCCceEEE----eCCeECCC--CCcCCCCC
Confidence 99999999999999 9999999999999999999999972 13466655 67887753 47999994
No 29
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=99.10 E-value=7.1e-10 Score=106.36 Aligned_cols=171 Identities=22% Similarity=0.291 Sum_probs=122.3
Q ss_pred ecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCcch
Q psy3680 42 IQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQQSQVPEH 121 (422)
Q Consensus 42 i~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~e~ 121 (422)
=.|||.+||||...++.+|......|-+.++-|=|.-. .....+....|..++..+|++++.- ++.||+-.+.
T Consensus 8 PsPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieDtD~------~R~~~~~~~~I~~dL~wlGl~wd~~-~~~QS~r~~~ 80 (230)
T cd00418 8 PSPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDP------ERSRPEYVESILEDLKWLGLDWDEG-PYRQSDRFDL 80 (230)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCcCCC------CCCChHHHHHHHHHHHHcCCCCCCC-eeehhcCHHH
Confidence 46899999999999999998888777677666666432 2234456677888888999999853 6889984332
Q ss_pred hHHHHHHhhccchhhhhcchhHHHHhhhcCCCCccchhhHHHhhhhhhccCccEEeecCchhHHHHHHHHHHHHhccccC
Q psy3680 122 TQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFD 201 (422)
Q Consensus 122 ~el~w~l~~~~~~~~l~r~~~~K~k~~~~~~~~~gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g 201 (422)
.+-. -.++.. .+ |..+|-+=-+.|=...+.++|+-|.|+..+-..-+.+.+.+|
T Consensus 81 y~~~------------------~~~L~~-~g---g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg---- 134 (230)
T cd00418 81 YRAY------------------AEELIK-KG---GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALG---- 134 (230)
T ss_pred HHHH------------------HHHHHH-cC---CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcC----
Confidence 2111 111111 12 777887777888888999999999999999999999999997
Q ss_pred ccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEecc----CCHHHHHHHhhh
Q psy3680 202 KIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEIT----DPPEVIVRKCKK 255 (422)
Q Consensus 202 ~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~----Dsp~~I~kKI~~ 255 (422)
++.|...+ .++|.+.+ |+|||||.++ .+|.=. -.|+.|...+..
T Consensus 135 --~~~P~~~H----~pll~~~~--g~KLSKr~~~--~~i~~~r~~G~~p~ai~~~l~~ 182 (230)
T cd00418 135 --WEPPRFYH----FPRLLLED--GTKLSKRKLN--TTLRALRRRGYLPEALRNYLAL 182 (230)
T ss_pred --CCCCeEEE----eeeeeCCC--CCCccCcCCC--cCHHHHHHCCCcHHHHHHHHHH
Confidence 34676665 77777753 4899999875 333221 257777777665
No 30
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=98.96 E-value=5.2e-08 Score=103.83 Aligned_cols=202 Identities=17% Similarity=0.217 Sum_probs=114.5
Q ss_pred CcEEEEeecCCCccchhhHHHHHH--HHHHH-HHcCCcE-EEEeeCceeec-c------------------------C-C
Q psy3680 35 PQRIFSGIQPTGTLHLGNYFGAVQ--TWSAL-QNKGEDV-IFCIVDLHSIT-I------------------------K-Q 84 (422)
Q Consensus 35 ~~~i~tGi~PTG~lHLGny~g~i~--~~~~l-q~~g~~~-~ilIaD~hAlt-~------------------------~-~ 84 (422)
+..|-||+.|||.|||||+...+. -+.+. ...|.++ +++..|-|.-. + + +
T Consensus 24 ~~~~~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G 103 (510)
T PRK00750 24 PVVVETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFG 103 (510)
T ss_pred cEEEEeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCC
Confidence 478999999999999999877555 23333 3368665 56677999521 0 0 0
Q ss_pred -CHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCcch---hHHHHH-Hhhccch-------------------------
Q psy3680 85 -KHKDLKENIQLMAASLLACGIDPQKSILFQQSQVPEH---TQLAWV-LTCLCTV------------------------- 134 (422)
Q Consensus 85 -~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~e~---~el~w~-l~~~~~~------------------------- 134 (422)
..+-...+...+.+.|-.+|++.+ ++.+++.... .+.... |...--+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~gi~~d---~~~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~~~~~~~~~~~P~~pic~~ 180 (510)
T PRK00750 104 CHESYAEHFNAPLREFLDRFGIEYE---FISATECYKSGRYDEAILTALENRDEIMEILLPYLGEERQATYSPFLPICPK 180 (510)
T ss_pred CchHHHHHHHHHHHHHHHHcCCceE---EEehhhhhccCchHHHHHHHHHhHHHHHHHHHHhcCCccCCCeeeeeeeCCC
Confidence 123345556677777888999764 6777764332 111110 1000000
Q ss_pred -hhhhcch-----------hHHHHhhhcCCCCc----cchhhHHHhhhhhhccCccEEeecCchhH-HHHHHHHHHH-Hh
Q psy3680 135 -NRLNHMP-----------TYVEKCAELKQSPT----GLFLYPVLQAADILLYKATHIPAGLDQIH-NINLANHLTQ-LF 196 (422)
Q Consensus 135 -~~l~r~~-----------~~K~k~~~~~~~~~----gl~~YPvLqAaDil~~~a~~vpvG~DQ~~-hielaRdia~-r~ 196 (422)
|++...+ .|.++.-....+++ |.+..=+==++-+..+++|+.|.|.||.. +..+++++++ .+
T Consensus 181 cg~~~~~~~~~~d~~~~~v~y~~~cG~~~~~~~~~g~~KL~Wr~dW~~rW~~l~Vd~e~~GkDh~~~s~~~~~~i~~~il 260 (510)
T PRK00750 181 CGKVLTTPVISYDAEAGTVTYDCECGHEGEVPVTGGHGKLQWKVDWPMRWAALGVDFEPFGKDHASASYDTSKKIAREIL 260 (510)
T ss_pred CCccceEEEEEEeCCCCEEEEEcCCCCEEEEecCCCCcccCCCCCcHHHHHHcCCCEEeeCcccCcchHHHHHHHHHHHc
Confidence 1111000 00000000000000 11111111133444578999999999999 9999999999 67
Q ss_pred ccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC-----CHHHHHHHhh
Q psy3680 197 NNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD-----PPEVIVRKCK 254 (422)
Q Consensus 197 n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D-----sp~~I~kKI~ 254 (422)
+. ..|..+. +..+..- + ++|||||.+| .|.+.| +|+.++=.+.
T Consensus 261 g~------~~P~~~~----y~~v~~~-~-G~KMSKSkGN---~i~~~d~l~~~~pd~lR~~l~ 308 (510)
T PRK00750 261 GG------EPPEPFV----YELFLDK-K-GEKISKSKGN---VITIEDWLEYAPPESLRLFMF 308 (510)
T ss_pred CC------CCCeeee----eeeEEeC-C-CCcccccCCC---ccCHHHHHHHCCHHHHHHHHH
Confidence 63 3565544 4555543 2 5899999887 888876 5666664554
No 31
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.83 E-value=5.6e-08 Score=98.93 Aligned_cols=198 Identities=20% Similarity=0.220 Sum_probs=119.0
Q ss_pred CCcEEEEeecCCCccchhhHHHHHH--HHHHHHH-cCCcE-EEEeeCcee------------------e--cc-----CC
Q psy3680 34 FPQRIFSGIQPTGTLHLGNYFGAVQ--TWSALQN-KGEDV-IFCIVDLHS------------------I--TI-----KQ 84 (422)
Q Consensus 34 ~~~~i~tGi~PTG~lHLGny~g~i~--~~~~lq~-~g~~~-~ilIaD~hA------------------l--t~-----~~ 84 (422)
.+..|-||+-|||.+||||+...+. -+.++++ .|.++ +++..|-|. . +. ..
T Consensus 19 ~~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~ 98 (353)
T cd00674 19 EKYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGC 98 (353)
T ss_pred CeEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCC
Confidence 4567889999999999999887665 3444444 57665 567788882 1 10 01
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCcchhHHHH-HHhhccchhhhhcchhHHHHhhh--------------
Q psy3680 85 KHKDLKENIQLMAASLLACGIDPQKSILFQQSQVPEHTQLAW-VLTCLCTVNRLNHMPTYVEKCAE-------------- 149 (422)
Q Consensus 85 ~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~e~~el~w-~l~~~~~~~~l~r~~~~K~k~~~-------------- 149 (422)
.++-...+...+.+.|-.+|++.+ ++.+++...+..+.= ++. .|+++..+++-+..
T Consensus 99 ~~~~~d~~~~~f~~~l~~lgi~~d---~~~~T~~y~~g~~~~~i~~------~L~~~~~I~~i~~~~~~~~~~~~~~P~~ 169 (353)
T cd00674 99 CESYAEHFERPFEESLEKLGIEVE---FISQSQMYKSGLYDENILI------ALEKRDEIMAILNEYRGRELQETWYPFM 169 (353)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeee---eeecCCchhhchHHHHHHH------HHHHCChHHHHHHHhcCCccCCCceeee
Confidence 345566777788888889999765 777777554422211 100 01111111111000
Q ss_pred -----------------------------c--CCCCc----cchhhHHHhhhhhhccCccEEeecCchhHH---HHHHHH
Q psy3680 150 -----------------------------L--KQSPT----GLFLYPVLQAADILLYKATHIPAGLDQIHN---INLANH 191 (422)
Q Consensus 150 -----------------------------~--~~~~~----gl~~YPvLqAaDil~~~a~~vpvG~DQ~~h---ielaRd 191 (422)
. ..+++ |.+..=+==++....+++|+.|+|.||..| +..++.
T Consensus 170 p~c~~cg~~~~~v~~~d~~~~~v~y~c~cG~~g~~~~~~g~~KL~Wr~dW~~rW~~l~Vd~E~~GkDh~~~ggs~~~~~~ 249 (353)
T cd00674 170 PYCEKCGKDTTTVEAYDAKAGTVTYKCECGHEETVDIRTGRGKLTWRVDWPMRWAILGVDFEPFGKDHASAGGSYDTGKE 249 (353)
T ss_pred eecCCcCcceeEEEEEeCCCCeEEEEcCCCCEEEEeecCCCcccCCCCCchhhhhhcCCCEEeeCccccccccHHHHHHH
Confidence 0 00111 122222222445555789999999999999 999999
Q ss_pred HHH-HhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC-----CHHHHHHHhhh
Q psy3680 192 LTQ-LFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD-----PPEVIVRKCKK 255 (422)
Q Consensus 192 ia~-r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D-----sp~~I~kKI~~ 255 (422)
+++ .++. ..|..+. ..++ .+.+ +.|||||.+| .|.+.| +|+.++=-+.+
T Consensus 250 i~~~ilg~------~~P~~~~----ye~V-~l~g-g~KMSKSkGn---vI~~~dll~~~~~dalR~~~l~ 304 (353)
T cd00674 250 IAREIFGG------EPPVPVM----YEFI-GLKG-GGKMSSSKGN---VITPSDWLEVAPPEVLRYLYAR 304 (353)
T ss_pred HHHHHhCC------CCCeEEE----eeeE-EeCC-CCccCCCCCC---cCCHHHHHHHhChHHHHHHHHh
Confidence 999 7774 2455543 3344 2333 3699999887 888865 45555554444
No 32
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=98.50 E-value=6.6e-07 Score=89.13 Aligned_cols=176 Identities=24% Similarity=0.404 Sum_probs=116.8
Q ss_pred eecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCcc
Q psy3680 41 GIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQQSQVPE 120 (422)
Q Consensus 41 Gi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~e 120 (422)
.=.|||.+||||+..++.+|...+..|.+.++-|-|.- ......+....|..++..+||+++.. ++.||+-.+
T Consensus 11 APSPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDtD------~~R~~~~~~~~I~~dL~wlGl~wDe~-~~~QS~r~~ 83 (299)
T PRK05710 11 APSPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDID------PPREVPGAADAILADLEWLGLHWDGP-VLYQSQRHD 83 (299)
T ss_pred CcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcCC------CCccchHHHHHHHHHHHHCCCCCCCC-ceEeeccHH
Confidence 34578999999999999999988888778888887743 13344566778899999999999864 577999544
Q ss_pred hhHHH--H------HHhhccchhhhhcch--------hHHHHhhhc--------------C----------------CC-
Q psy3680 121 HTQLA--W------VLTCLCTVNRLNHMP--------TYVEKCAEL--------------K----------------QS- 153 (422)
Q Consensus 121 ~~el~--w------~l~~~~~~~~l~r~~--------~~K~k~~~~--------------~----------------~~- 153 (422)
..+.. . ...|.+|-.++.+.- .|-...+.. . ..
T Consensus 84 ~Y~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~~~~iRlk~~~~~~~~~D~~~G~~~~~~~ 163 (299)
T PRK05710 84 AYRAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRNPPAWRLRVPDAVIAFDDRLQGRQHQDLA 163 (299)
T ss_pred HHHHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCccccCCceEEEEcCCCceEEEEecceeEeeCCC
Confidence 32221 1 245899988885432 111111000 0 00
Q ss_pred -Cc---------cchhhHHHhhhhhhccCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCC
Q psy3680 154 -PT---------GLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLK 223 (422)
Q Consensus 154 -~~---------gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~ 223 (422)
.+ |..+|-+==+.|=...+.+.|.=|.|...+-..-.-|.+.++ ++.|+..+ .+.|.+.+
T Consensus 164 ~~~~D~Vi~R~dg~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg------~~~P~y~H----~pll~~~~ 233 (299)
T PRK05710 164 LAVGDFVLRRADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLG------LPTPRYLH----LPLVLNAD 233 (299)
T ss_pred CCCCCEEEEecCCCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHcC------CCCCeEEE----eecccCCC
Confidence 01 333443333444444589999999999887777777777776 34676666 67777764
Q ss_pred CCCcccccCCCC
Q psy3680 224 DPSKKMSKSDLD 235 (422)
Q Consensus 224 ~~~~KMSKS~~n 235 (422)
++||||++..
T Consensus 234 --g~kLSKr~~~ 243 (299)
T PRK05710 234 --GQKLSKQNGA 243 (299)
T ss_pred --CCcccccCCc
Confidence 5899999763
No 33
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=98.45 E-value=1.6e-06 Score=92.44 Aligned_cols=82 Identities=23% Similarity=0.341 Sum_probs=57.3
Q ss_pred CCcEEEEeecCCCccchhhHHHHHH--HHHHHH-HcCCcE-EEEeeCce--------------------eec---cC--C
Q psy3680 34 FPQRIFSGIQPTGTLHLGNYFGAVQ--TWSALQ-NKGEDV-IFCIVDLH--------------------SIT---IK--Q 84 (422)
Q Consensus 34 ~~~~i~tGi~PTG~lHLGny~g~i~--~~~~lq-~~g~~~-~ilIaD~h--------------------Alt---~~--~ 84 (422)
.+..|-||+.|||.+||||+..++. -+.+.. ..|+++ +++.+|.| .++ +| .
T Consensus 18 ~~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~ 97 (515)
T TIGR00467 18 NLYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGC 97 (515)
T ss_pred CeEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCC
Confidence 4678999999999999999988766 233443 367654 67888888 223 22 1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCC
Q psy3680 85 KHKDLKENIQLMAASLLACGIDPQKSILFQQSQV 118 (422)
Q Consensus 85 ~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi 118 (422)
..+-...+.....+.+-.+|++. .++.+++.
T Consensus 98 ~~s~~~h~~~~~~~~l~~~gi~~---e~~s~te~ 128 (515)
T TIGR00467 98 KTSYAEHFLIPFLESLPVLGINP---EFIRASKQ 128 (515)
T ss_pred cHHHHHHHHHHHHHHHHHcCCeE---EEEEHHHh
Confidence 34445566677777788899964 67777774
No 34
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.42 E-value=3.8e-06 Score=89.13 Aligned_cols=196 Identities=18% Similarity=0.249 Sum_probs=124.3
Q ss_pred EEEeecCC--CccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q psy3680 38 IFSGIQPT--GTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQQ 115 (422)
Q Consensus 38 i~tGi~PT--G~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~q 115 (422)
|.+.|.|| |.+||||...++.+|.-.+..|.+.++-|-|.-. .....+....+..++..+|++++.- .|.|
T Consensus 5 vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~------~R~~~~~~~~i~~~L~WLGl~wDe~-py~Q 77 (513)
T PRK14895 5 VITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDK------ERSTKEAVEAIFSGLKWLGLDWNGE-VIFQ 77 (513)
T ss_pred eeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCc------cccChHHHHHHHHHHHHcCCCCCCC-ceeE
Confidence 55667666 9999999999999998888877777777777531 1123355566788888899999743 6899
Q ss_pred CCCcc-hhHHHH-H------Hhhccchhhhhcch----------hHHHHhhh------------------cCC-------
Q psy3680 116 SQVPE-HTQLAW-V------LTCLCTVNRLNHMP----------TYVEKCAE------------------LKQ------- 152 (422)
Q Consensus 116 Sdi~e-~~el~w-~------l~~~~~~~~l~r~~----------~~K~k~~~------------------~~~------- 152 (422)
|+-.+ +.+..- + .-|++|-.++...- .|-.+.+. ...
T Consensus 78 SeR~~~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~~~iR~k~p~~~~~~~~D 157 (513)
T PRK14895 78 SKRNNLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIYPTDIKPVIRLKTPREGSITIHD 157 (513)
T ss_pred eCcHHHHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhhhcCCCeeEEEEcCCCCceEEEe
Confidence 99543 222222 2 24888887775321 11111100 000
Q ss_pred CCccchh-------hHHHh------------hhhhhccCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccC
Q psy3680 153 SPTGLFL-------YPVLQ------------AADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQD 213 (422)
Q Consensus 153 ~~~gl~~-------YPvLq------------AaDil~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~ 213 (422)
.-.|... -+|++ +.|=...+.+.|..|.||..|.-.-.-+.+.++. ..|...+
T Consensus 158 ~v~G~~~~~~~~~~D~Vi~RsDG~ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~aLG~------~~p~~~H-- 229 (513)
T PRK14895 158 TLQGEVVIENSHIDDMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFGY------AVPSMTH-- 229 (513)
T ss_pred ecccceecccccCCCcEEEEeCCCcchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHHcCC------CCCeEEE--
Confidence 0001111 11221 1111224899999999999999888888888872 4676666
Q ss_pred CCCcccccCCCCCcccccCCCCCCCcEeccC------CHHHHHHHhhhh
Q psy3680 214 ESAGKVKSLKDPSKKMSKSDLDSNSKIEITD------PPEVIVRKCKKA 256 (422)
Q Consensus 214 ~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D------sp~~I~kKI~~A 256 (422)
.+.|.+.+ ++||||..+. ..+.+ .|+.|.+.+...
T Consensus 230 --~plv~~~~--g~KLSKR~g~----~~i~~~r~~G~~Peai~n~la~L 270 (513)
T PRK14895 230 --IPLIHGAD--GAKLSKRHGA----LGIEAYKDMGYLPESLCNYLLRL 270 (513)
T ss_pred --EEeEEcCC--CCccccccCc----hhHHHHHHCCCCHHHHHHHHHHh
Confidence 66777764 5799999874 33332 588888888753
No 35
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=98.35 E-value=1.9e-05 Score=83.62 Aligned_cols=190 Identities=26% Similarity=0.308 Sum_probs=119.0
Q ss_pred cCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCcch-
Q psy3680 43 QPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQQSQVPEH- 121 (422)
Q Consensus 43 ~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~e~- 121 (422)
.|||.+||||...++.+|.-....|.+.++=|-|.-. ..........|..++..+||+++. ..|.||+-.+.
T Consensus 9 sPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~------~R~~~~~~~~i~~~L~wlGl~~de-~~~~QS~r~~~y 81 (470)
T TIGR00464 9 SPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDTDL------ERNIEEAEEAILEGLKWLGISWDE-GPYYQSQRLDIY 81 (470)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCC------ccCChHHHHHHHHHHHHCCCCCCC-CeeehhCCHHHH
Confidence 5889999999999999998777777676666665431 223345566788888889999985 37999985443
Q ss_pred hHHHH-H------Hhhccchhhhhcch----------hHHH------------Hhhh----------cC-C---------
Q psy3680 122 TQLAW-V------LTCLCTVNRLNHMP----------TYVE------------KCAE----------LK-Q--------- 152 (422)
Q Consensus 122 ~el~w-~------l~~~~~~~~l~r~~----------~~K~------------k~~~----------~~-~--------- 152 (422)
.+..- + .-|++|-.++...- .|-. +... .. +
T Consensus 82 ~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~~D~~~ 161 (470)
T TIGR00464 82 KKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLAKGIPPVVRFKIPQEAVVSFNDQVR 161 (470)
T ss_pred HHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHhcCCCceEEEEcCCCCceeEEeccc
Confidence 22222 1 24888877775321 0100 0000 00 0
Q ss_pred -------CC---------ccchhhHHHhhhhhhccCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCC
Q psy3680 153 -------SP---------TGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESA 216 (422)
Q Consensus 153 -------~~---------~gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~ 216 (422)
.. =|..+|=+=-+.|=...+.++|..|.||..|...-..+.+.++. ..|...+ .
T Consensus 162 G~~~~~~~~~~D~Vl~RsdG~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aLg~------~~p~~~H----~ 231 (470)
T TIGR00464 162 GEITFQNSELDDFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALGW------KIPVFAH----L 231 (470)
T ss_pred ceEEecCccCCCeEEEecCCCcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHcCC------CCCeEEE----E
Confidence 00 02222221111222234899999999999999998888888872 3566655 4
Q ss_pred cccccCCCCCcccccCCCCCCCcEeccC------CHHHHHHHhhh
Q psy3680 217 GKVKSLKDPSKKMSKSDLDSNSKIEITD------PPEVIVRKCKK 255 (422)
Q Consensus 217 ~~lp~L~~~~~KMSKS~~n~~s~I~L~D------sp~~I~kKI~~ 255 (422)
+.+.+++ ++||||..+ .+.|.+ .|+.+...+.+
T Consensus 232 p~l~~~~--g~kLSKR~g----~~~l~~l~~~g~~p~a~~~~~~~ 270 (470)
T TIGR00464 232 PMILDED--GKKLSKRDG----ATSIMQFKEQGYLPEALINYLAL 270 (470)
T ss_pred eeeecCC--CccccccCC----CccHHHHHHCCCCHHHHHHHHHH
Confidence 5566654 479999976 555543 57777777765
No 36
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=98.33 E-value=1.5e-05 Score=81.08 Aligned_cols=217 Identities=19% Similarity=0.234 Sum_probs=90.0
Q ss_pred CCCcEEEEeecCCCccchhhHHHHHH---HHHHHHHcCCcE-EEEeeC-ceeecc-C----C---------------CH-
Q psy3680 33 SFPQRIFSGIQPTGTLHLGNYFGAVQ---TWSALQNKGEDV-IFCIVD-LHSITI-K----Q---------------KH- 86 (422)
Q Consensus 33 ~~~~~i~tGi~PTG~lHLGny~g~i~---~~~~lq~~g~~~-~ilIaD-~hAlt~-~----~---------------~~- 86 (422)
+.+..+-||+.|||.+||||+--+++ -...|.+.|.++ +|+.+| +-.|-+ | . ||
T Consensus 22 ~~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP~ 101 (360)
T PF01921_consen 22 KEPYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDPF 101 (360)
T ss_dssp -SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-TT
T ss_pred CccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCCC
Confidence 45678999999999999999877665 233456667433 344444 445531 1 0 11
Q ss_pred ----HHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCcch--hHHHH--HHhhccchhhhhcc------------------
Q psy3680 87 ----KDLKENIQLMAASLLACGIDPQKSILFQQSQVPEH--TQLAW--VLTCLCTVNRLNHM------------------ 140 (422)
Q Consensus 87 ----~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~e~--~el~w--~l~~~~~~~~l~r~------------------ 140 (422)
.-...+.......+-.+|+++ .++.|++.... ..... .|...-.+.++..-
T Consensus 102 G~~~SyaeH~~~~~~~~L~~~gie~---e~~s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~~~~~~~~y~Pf~piC~ 178 (360)
T PF01921_consen 102 GCHESYAEHFNAPFEEFLDEFGIEY---EFISQTEMYRSGRYDEQIRTALENRDEIREILNEYRGRERPETYSPFLPICE 178 (360)
T ss_dssp SSSSCHHHHHHHHHHHHHHTTT------EEEECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHHHHT--TT--SEEEEET
T ss_pred CCCccHHHHHHHHHHHHHHHcCCce---EEEeHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhcCcCCCCCeeeeeeecc
Confidence 113344455666666789965 68888885321 11110 11110000000000
Q ss_pred ----------h---------hHHH-Hhhhc--CCCCc--cchhhHHHhhhhhhccCccEEeecCchhH---HHHHHHHHH
Q psy3680 141 ----------P---------TYVE-KCAEL--KQSPT--GLFLYPVLQAADILLYKATHIPAGLDQIH---NINLANHLT 193 (422)
Q Consensus 141 ----------~---------~~K~-k~~~~--~~~~~--gl~~YPvLqAaDil~~~a~~vpvG~DQ~~---hielaRdia 193 (422)
. .|++ ..-.. .+++= |.+..=+==++-...+++|+.|.|.|+.. -...+.+||
T Consensus 179 ~cGri~tt~v~~~d~~~~~v~Y~c~~cG~~g~~~i~~g~gKL~WkvDW~mRW~~lgVdfEp~GKDH~~~GGS~d~~~~I~ 258 (360)
T PF01921_consen 179 KCGRIDTTEVTEYDPEGGTVTYRCEECGHEGEVDITGGNGKLQWKVDWPMRWAALGVDFEPFGKDHASPGGSYDTSKRIA 258 (360)
T ss_dssp TTEE--EEEEEEE--SSSEEEEE--TTS---EEETTTT-EEE-HHHHHHHHHHHTT-SEEEEEHHHHCTTSHHHHHHHHH
T ss_pred ccCCcccceeeEeecCCCEEEEEecCCCCEEEEecCCCcccccCCCcChhhhhhcCceeccCCCccCCCCCChhhHHHHH
Confidence 0 0000 00000 00111 33443333344455579999999999999 999999999
Q ss_pred HHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC-----CHHHHHHHhhhhccCCCCccccCC
Q psy3680 194 QLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD-----PPEVIVRKCKKALTDCTSAVTYDP 268 (422)
Q Consensus 194 ~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D-----sp~~I~kKI~~A~tD~~~~~~~~p 268 (422)
+++ || ...|..+.- -.+ ++.+ ++|||||.+| .|.+.| +|+.++=-+.+ +.+......++
T Consensus 259 ~~i---~g--~~pP~~~~Y----E~~-~~~g-~~kmSsSkG~---~~t~~e~L~~~~PE~lr~l~~~--~~P~~~~~~~~ 322 (360)
T PF01921_consen 259 REI---LG--YEPPVPFPY----EFF-LDKG-GGKMSSSKGN---GITPEEWLEYAPPESLRYLMAR--TKPNKAKDFSF 322 (360)
T ss_dssp HHC---C-------EEEEE------E-EES------------------HHHHHTTS-HHHHHHHHHC--S-TTS-EEE--
T ss_pred HHH---hC--CCCCCCCCe----eEE-EeCC-CcccccCCCC---ccCHHHHHHhcCHHHHHHHHcc--cCCCcceEecc
Confidence 764 22 234555432 122 3333 4699999987 887765 67776655544 44444333333
No 37
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=98.20 E-value=1.2e-05 Score=85.13 Aligned_cols=194 Identities=22% Similarity=0.256 Sum_probs=124.1
Q ss_pred EeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCce------EEE
Q psy3680 40 SGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKS------ILF 113 (422)
Q Consensus 40 tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~------~i~ 113 (422)
..=.|||.+||||...++.+|.-....|.+.++-|-|.-. ..........+..++.-+|++++.. -.|
T Consensus 9 fAPSPtG~lHiG~~rtal~n~l~Ar~~~G~fiLRieDtD~------~R~~~~~~~~i~~~L~wlGl~~De~p~~~~~gpy 82 (476)
T PRK01406 9 FAPSPTGYLHIGGARTALFNWLFARHHGGKFILRIEDTDQ------ERSTEEAEEAILEGLKWLGLDWDEGPDGGPYGPY 82 (476)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCC------CCCChHHHHHHHHHHHHCCCCCCCCCccCCCCce
Confidence 3446889999999999999998887777676666665431 2234455667788888899999854 148
Q ss_pred EcCCCcch-hHHHHH-------Hhhccchhhhhcch--h--------HHH------------Hhhhc----------C--
Q psy3680 114 QQSQVPEH-TQLAWV-------LTCLCTVNRLNHMP--T--------YVE------------KCAEL----------K-- 151 (422)
Q Consensus 114 ~qSdi~e~-~el~w~-------l~~~~~~~~l~r~~--~--------~K~------------k~~~~----------~-- 151 (422)
.||+-.+. .+..-. .-|++|-.++...- + |-. +.... +
T Consensus 83 ~QS~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~~~~~g~~~~iR~k~p~~~ 162 (476)
T PRK01406 83 RQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAARLAAGEPPVIRFKVPDEG 162 (476)
T ss_pred ehhcCHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHhCCCCeeEEEEcCCCC
Confidence 99985432 222211 34888888775321 1 100 00000 0
Q ss_pred ---------------CCCccch------hhHHHhhhhhhc---cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCC
Q psy3680 152 ---------------QSPTGLF------LYPVLQAADILL---YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIP 207 (422)
Q Consensus 152 ---------------~~~~gl~------~YPvLqAaDil~---~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P 207 (422)
...++-+ -+|..+.||++- .+.++|..|.||..|.-.-..+.+.++. ..|
T Consensus 163 ~~~~~D~i~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~alG~------~~p 236 (476)
T PRK01406 163 EVVFDDLVRGEIEFPNSELDDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALGW------EVP 236 (476)
T ss_pred ceEEEEeccceEEeccccCCCcEEEecCCCccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHhCC------CCC
Confidence 0001110 155556666643 5889999999999999988888888873 356
Q ss_pred eecccCCCCcccccCCCCCcccccCCCCCCCcEeccC------CHHHHHHHhhh
Q psy3680 208 QLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD------PPEVIVRKCKK 255 (422)
Q Consensus 208 ~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D------sp~~I~kKI~~ 255 (422)
...+ .+.+.+++ ++||||..+ .+.+.+ .|+.+...+..
T Consensus 237 ~~~H----~pli~~~~--g~klSKR~g----~~~l~~l~~~G~~p~Ai~n~l~~ 280 (476)
T PRK01406 237 VFAH----LPLILGPD--GKKLSKRHG----ATSVEQYRDMGYLPEALLNYLAL 280 (476)
T ss_pred eEEE----eeeeeCCC--CCcccCcCC----ccCHHHHHHCCCCHHHHHHHHHH
Confidence 6665 55566764 579999976 455543 57777776655
No 38
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.15 E-value=3.1e-05 Score=73.77 Aligned_cols=156 Identities=16% Similarity=0.085 Sum_probs=91.0
Q ss_pred cCCCcEEEEeecCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEee-Cceee-c------cCCCHHHH-HHHHHHHHHH
Q psy3680 32 ISFPQRIFSGIQPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIV-DLHSI-T------IKQKHKDL-KENIQLMAAS 99 (422)
Q Consensus 32 ~~~~~~i~tGi~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIa-D~hAl-t------~~~~~~~i-~~~~~~i~a~ 99 (422)
+++.....+|-.|-|.+||||....+. -+.++++ .|.++++..+ |.|.. + ...+|.++ ++++..+.++
T Consensus 18 ~~~~~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~ 97 (213)
T cd00672 18 PGLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFED 97 (213)
T ss_pred CCCceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 344556678999999999999766543 3444444 5766554433 33322 1 12466555 5667788889
Q ss_pred HHHcCCCC-CceEEEEcCCCcchhHHHHHHhhccchhhhhcchhHHHHhhhcCCCCccchhhHHHhhhhhhccCccEEee
Q psy3680 100 LLACGIDP-QKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGLFLYPVLQAADILLYKATHIPA 178 (422)
Q Consensus 100 ~lA~Gldp-~k~~i~~qSdi~e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~~~~~~gl~~YPvLqAaDil~~~a~~vpv 178 (422)
+.++|+.+ +.. .-. |-+.|-+ ||..++-...|+..+
T Consensus 98 ~~~l~i~~~d~~-~rt-----------Wh~ec~a-------------------------------m~~~~lg~~~dih~~ 134 (213)
T cd00672 98 MKALNVLPPDVV-PRV-----------WHIECSA-------------------------------MAMKYLGETFDIHGG 134 (213)
T ss_pred HHHcCCCCCCcc-eee-----------hhHHHHH-------------------------------HHHHHcCCCccEEee
Confidence 99999987 421 111 6555432 233344445688889
Q ss_pred cCchh-HHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC
Q psy3680 179 GLDQI-HNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD 244 (422)
Q Consensus 179 G~DQ~-~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D 244 (422)
|.|.. +|++.-.-....+. |+ +.+...+ +.-+..+. ++|||||.+| .|.+.|
T Consensus 135 G~Dl~fpH~~~~~a~~~a~~---g~--~~~~~~~----h~~~v~~~--g~KMSKs~Gn---~v~~~d 187 (213)
T cd00672 135 GVDLIFPHHENEIAQSEAAT---GK--PFARYWL----HTGHLTID--GEKMSKSLGN---FITVRD 187 (213)
T ss_pred cCCCCcChHHHHHHHHHHHh---CC--CCCcEEE----EEEEEecc--CcchhhcCCC---ccCHHH
Confidence 99986 56665443333332 22 1222222 22333453 4799999987 777754
No 39
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=98.12 E-value=2.7e-05 Score=76.79 Aligned_cols=192 Identities=20% Similarity=0.278 Sum_probs=115.9
Q ss_pred cCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCcchh
Q psy3680 43 QPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQQSQVPEHT 122 (422)
Q Consensus 43 ~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~e~~ 122 (422)
.|||.+||||...++.+|......|-++++=|-|.-. .....+....|..++.-+|++++.. .+.||+-.+..
T Consensus 8 SPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD~------~R~~~~~~~~I~~dL~wLGl~wDe~-~~~QS~r~~~Y 80 (272)
T TIGR03838 8 SPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDP------PREVPGAADDILRTLEAYGLHWDGE-VVYQSQRHALY 80 (272)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCC------CCCChHHHHHHHHHHHHcCCCCCCC-eeeeeCCHHHH
Confidence 5899999999999999998888777677766666542 1223455667788888899999864 57899854432
Q ss_pred -HHHHH-------Hhhccchhhhhcc-----hhHHHHhhh------c----------C------CCCccchh--------
Q psy3680 123 -QLAWV-------LTCLCTVNRLNHM-----PTYVEKCAE------L----------K------QSPTGLFL-------- 159 (422)
Q Consensus 123 -el~w~-------l~~~~~~~~l~r~-----~~~K~k~~~------~----------~------~~~~gl~~-------- 159 (422)
+..-. .-|++|-.++... +.|....+. . . ..-.|...
T Consensus 81 ~~~~~~L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~~~~~~~~~~~~~Rlk~~~~~~~~~D~~~g~~~~~~~~~~~ 160 (272)
T TIGR03838 81 QAALDRLLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRNGLLGRPARPAAWRLRVPDGVIAFDDRLQGPQQQDLAAAVG 160 (272)
T ss_pred HHHHHHHHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhcccccccCCCceEEEecCCCCceEEEeeeeEEEecCcccCC
Confidence 22211 2488888877543 122211110 0 0 00001111
Q ss_pred ---------hHHHh---hhhhhccCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCc
Q psy3680 160 ---------YPVLQ---AADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSK 227 (422)
Q Consensus 160 ---------YPvLq---AaDil~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~ 227 (422)
||..+ +.|=...+.++|.=|.|...+--.-.-|.+.++ +..|...+ .+.|.+.+ ++
T Consensus 161 D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg------~~~P~y~H----~pll~~~~--g~ 228 (272)
T TIGR03838 161 DFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLG------LPPPRYLH----LPLVVNAD--GE 228 (272)
T ss_pred CEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhC------CCCCeEEe----chhhhCCC--CC
Confidence 22222 122222479999999999887777677777776 34676655 67777764 58
Q ss_pred ccccCCCCCCCcEeccCCHHHHHHHhhh
Q psy3680 228 KMSKSDLDSNSKIEITDPPEVIVRKCKK 255 (422)
Q Consensus 228 KMSKS~~n~~s~I~L~Dsp~~I~kKI~~ 255 (422)
|+||++.. ..|.=.+.++.+-..+..
T Consensus 229 kLSKR~~~--~~i~~~~~~~~~~~~l~~ 254 (272)
T TIGR03838 229 KLSKQNGA--PALDLSHPLPALLAALRF 254 (272)
T ss_pred eeeccCCc--cchhcCCcHHHHHHHHHH
Confidence 99999763 223222344444444444
No 40
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.06 E-value=2.2e-05 Score=75.98 Aligned_cols=168 Identities=20% Similarity=0.221 Sum_probs=102.8
Q ss_pred EEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCC
Q psy3680 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQQSQ 117 (422)
Q Consensus 38 i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSd 117 (422)
.=.|-.|||.+||||...++.+|+-....+...++=|-|.-. .-..........+.+++..+|++++ ..+.||+
T Consensus 4 ~RfaPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDtD~----~r~~~~~~~~~~i~~dL~wLGl~~d--~~~~qS~ 77 (240)
T cd09287 4 MRFAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDP----RTKRPDPEAYDMIPEDLEWLGVKWD--EVVIASD 77 (240)
T ss_pred EeCCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcCCC----CcccchHHHHHHHHHHHHHcCCCCC--Cccchhc
Confidence 345788999999999999999998776665566555555421 1101244445568899999999998 4789998
Q ss_pred C-cchhHHHHHHhhccchhhhhcchhHHHHhhhcCCCCccchhhHHHhhhhhhccCccEEeecCchhHHHHHHHHHHHHh
Q psy3680 118 V-PEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLF 196 (422)
Q Consensus 118 i-~e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~~~~~~gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hielaRdia~r~ 196 (422)
- ..+.+..-.| ...|. .|. + ....+.-....+|-+=-+.|=...+.++|.-|.|-..+-..-.-+.+.+
T Consensus 78 r~~~y~~~~~~L---i~~G~-----aY~-~-~~~~~~~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~~l~~~L 147 (240)
T cd09287 78 RIELYYEYARKL---IEMGG-----AYV-H-PRTGSKYRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYEYF 147 (240)
T ss_pred cHHHHHHHHHHH---HHcCC-----ccc-C-cccCCcEEEEEccccceeeeccccCCCeEEechhhhhCCHHHHHHHHHc
Confidence 4 3333332111 11111 111 0 0001111122444444444555578999999999988887777777777
Q ss_pred ccccCccCCCCeecccCCCCcccccCCCCCcccccCCC
Q psy3680 197 NNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDL 234 (422)
Q Consensus 197 n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~ 234 (422)
+ ++.|...+ .|.|.. + ++||||...
T Consensus 148 g------~~~P~~~H----~pll~~--~-~~kLSKR~~ 172 (240)
T cd09287 148 G------WEYPETIH----WGRLKI--E-GGKLSTSKI 172 (240)
T ss_pred C------CCCCcEEe----eeeecC--C-CCeeccccc
Confidence 6 34565555 555542 2 489999974
No 41
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=98.06 E-value=0.00019 Score=75.99 Aligned_cols=207 Identities=17% Similarity=0.138 Sum_probs=110.7
Q ss_pred CCCcEEE-EeecCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEee-Ccee--ec-----cCCCHHHH-HHHHHHHHHH
Q psy3680 33 SFPQRIF-SGIQPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIV-DLHS--IT-----IKQKHKDL-KENIQLMAAS 99 (422)
Q Consensus 33 ~~~~~i~-tGi~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIa-D~hA--lt-----~~~~~~~i-~~~~~~i~a~ 99 (422)
....++| ||-.|.|.+||||..+.+. -+.++++ .|.+|++..+ |-|. ++ ...++.++ +.+...+.++
T Consensus 21 ~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~ 100 (463)
T PRK00260 21 PGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHED 100 (463)
T ss_pred CCcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3445666 9999999999999877554 3444444 6888777666 3331 11 12355555 4556788899
Q ss_pred HHHcCC-CCCceEEEEcCC-CcchhHHH-----------------HHHhhccchhhhhcch--hHHH--Hh------hhc
Q psy3680 100 LLACGI-DPQKSILFQQSQ-VPEHTQLA-----------------WVLTCLCTVNRLNHMP--TYVE--KC------AEL 150 (422)
Q Consensus 100 ~lA~Gl-dp~k~~i~~qSd-i~e~~el~-----------------w~l~~~~~~~~l~r~~--~~K~--k~------~~~ 150 (422)
+.++|+ .|+. +.+-|+ +++..++. |-..+.-..|.|.+.. .... ++ +.+
T Consensus 101 ~~~Lgi~~~d~--~~r~t~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~~~yg~ls~~~~~~~~~~~~~~~~~~K~~~ 178 (463)
T PRK00260 101 MDALNVLPPDI--EPRATEHIPEIIELIERLIDKGHAYEADGDVYFDVRKFPDYGKLSGRNLDELQAGARVEVAEEKRDP 178 (463)
T ss_pred HHHcCCCCCCc--cccccccHHHHHHHHHHHHHCCCEEEecCeEEEecccccccccCCCCCHHHHhccCcCCcccCCCCc
Confidence 999999 4542 112222 12221111 1112233344443321 0000 00 000
Q ss_pred ------CC--------------CCccchhhHHHhhhhhhccCccEEeecCchh-HHHHHHHHHHHHhccccCccCCCCee
Q psy3680 151 ------KQ--------------SPTGLFLYPVLQAADILLYKATHIPAGLDQI-HNINLANHLTQLFNNKFDKIFPIPQL 209 (422)
Q Consensus 151 ------~~--------------~~~gl~~YPvLqAaDil~~~a~~vpvG~DQ~-~hielaRdia~r~n~~~g~~f~~P~~ 209 (422)
+. .-.|.-+=..-|+..++--..|+.++|.|.. +|+ .++||+.... +|. +-+..
T Consensus 179 ~DF~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~~~~lg~~~Dih~gG~DlifpHh--~neiaqs~a~-~g~--p~~~~ 253 (463)
T PRK00260 179 LDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLIFPHH--ENEIAQSEAA-TGK--PFANY 253 (463)
T ss_pred cccceecCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhcCCCcceecCccccCCCch--HhHHHHHHHh-cCC--CcceE
Confidence 00 1122233344667777777899999999954 455 4566664321 231 11222
Q ss_pred cccCCCCcccccCCCCCcccccCCCCCCCcEeccC-----CHHHHHHHhhh
Q psy3680 210 LPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD-----PPEVIVRKCKK 255 (422)
Q Consensus 210 li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D-----sp~~I~kKI~~ 255 (422)
.+ +.-+..++ |+|||||.+| .|.+.| +|+.++=.+.+
T Consensus 254 w~----H~g~v~~~--G~KMSKS~GN---~i~~~dll~~~~~d~lR~~ll~ 295 (463)
T PRK00260 254 WM----HNGFVTVN--GEKMSKSLGN---FFTIRDLLKKYDPEVLRFFLLS 295 (463)
T ss_pred EE----EccEEccC--CCcccCcCCC---CCCHHHHHHHcCchHhHHHHHh
Confidence 22 22222343 5899999987 887765 56666655554
No 42
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=97.99 E-value=2.4e-05 Score=65.78 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=44.5
Q ss_pred EEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHH
Q psy3680 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAAS 99 (422)
Q Consensus 38 i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~ 99 (422)
+++|-.+ +.+|+||+.+ ++.+.+++ .++++.++|.|+.....+...++++...+.+.
T Consensus 2 ~~~~G~F-dp~H~GH~~l-~~~a~~~~---d~~i~~i~~~~~~~~~~~~~~~~~R~~~l~~~ 58 (105)
T cd02156 2 ARFPGEP-GYLHIGHAKL-ICRAKGIA---DQCVVRIDDNPPVKVWQDPHELEERKESIEED 58 (105)
T ss_pred EEeCCCC-CCCCHHHHHH-HHHHHHhC---CcEEEEEcCCCcccccCChHHHHHHHHHHHHH
Confidence 5678888 8999999997 67787765 36999999999988655677777776665554
No 43
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=97.98 E-value=5.8e-05 Score=75.54 Aligned_cols=60 Identities=25% Similarity=0.140 Sum_probs=38.6
Q ss_pred CccEEeecCchh-HHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC
Q psy3680 172 KATHIPAGLDQI-HNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD 244 (422)
Q Consensus 172 ~a~~vpvG~DQ~-~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D 244 (422)
..|+..+|.||. .|++.-.-.....+. . ..|..+. .+.++. + ++|+|||||.+| .|++.|
T Consensus 226 ~~di~~~G~D~~~~h~~~~~~~~~~~~~---~--~~~~~~~---~~g~~~-~-~~g~KmSKS~gn---~v~~~d 286 (312)
T cd00668 226 PADWHLIGKDILRGWANFWITMLVALFG---E--IPPKNLL---VHGFVL-D-EGGQKMSKSKGN---VIDPSD 286 (312)
T ss_pred CceEEEEecchhhhHHHHHHHHHHHhcC---C--CCcceeE---ECcEEE-c-CCCccccccCCC---cCCHHH
Confidence 478999999999 887765555444432 1 1233443 345553 3 335899999997 888744
No 44
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=97.92 E-value=2.9e-05 Score=81.36 Aligned_cols=192 Identities=23% Similarity=0.263 Sum_probs=119.3
Q ss_pred eecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCcc
Q psy3680 41 GIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQQSQVPE 120 (422)
Q Consensus 41 Gi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~e 120 (422)
.=.|||.+||||...++.+|+-....|.+.++=|-|.-. ...+......+..++..+|++++. .|.||+..+
T Consensus 8 APSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~------~Rs~~~~~~~I~e~L~wLGI~~De--~y~QSer~~ 79 (445)
T PRK12558 8 APSPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTDL------ERSKQEYADAIAEDLKWLGINWDR--TFRQSDRFD 79 (445)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeccCCc------ccchHHHHHHHHHHHHHcCCCCCc--cccHHHHHH
Confidence 346889999999999999999888877777776666541 223456667888888899999984 689998543
Q ss_pred h-hHHH-HH------Hhhccchhhhhcch----------hHHHHh------------hh----------cC------CCC
Q psy3680 121 H-TQLA-WV------LTCLCTVNRLNHMP----------TYVEKC------------AE----------LK------QSP 154 (422)
Q Consensus 121 ~-~el~-w~------l~~~~~~~~l~r~~----------~~K~k~------------~~----------~~------~~~ 154 (422)
. .+.. -+ .-|++|-.++..+- .|..++ .. .+ ..-
T Consensus 80 ~y~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~D~i 159 (445)
T PRK12558 80 RYDEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAALEAEGRKPHWRFKLDDEPISWDDLI 159 (445)
T ss_pred HHHHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHhHHhcCCCceEEEecCCCceEEEEEe
Confidence 2 2211 11 24888877774321 111100 00 00 000
Q ss_pred ccchhhHHHhhhhhhc-------------------cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCC
Q psy3680 155 TGLFLYPVLQAADILL-------------------YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDES 215 (422)
Q Consensus 155 ~gl~~YPvLqAaDil~-------------------~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~ 215 (422)
-|...++.-.--|.+. .+.++|.=|.|...+--.-.-|.+.++ +..|+..+
T Consensus 160 ~G~~~~~~~~~~D~Vi~R~dg~PtY~fA~vVDD~~m~ITHViRG~d~l~~t~~q~~l~~alg------~~~P~f~H---- 229 (445)
T PRK12558 160 RGEQSIDAASLSDPVLIRADGSYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALG------AKPPVFAH---- 229 (445)
T ss_pred eeEeecccccCCCeEEEecCCCccccccceeccccCCCCEEEechhhhhCCHHHHHHHHHhC------CCCCeEEE----
Confidence 1222222111123332 368899999998877666566666665 34677766
Q ss_pred CcccccCCCCCcccccCCCCCCCcEeccC------CHHHHHHHhhhh
Q psy3680 216 AGKVKSLKDPSKKMSKSDLDSNSKIEITD------PPEVIVRKCKKA 256 (422)
Q Consensus 216 ~~~lp~L~~~~~KMSKS~~n~~s~I~L~D------sp~~I~kKI~~A 256 (422)
.|+|.+- + ++|+||.++. ..+.+ .|+.|.+.+...
T Consensus 230 ~pli~~~-~-g~KLSKR~g~----~sv~~~r~~G~~Peai~n~la~l 270 (445)
T PRK12558 230 LSLLTGA-D-GKGLSKRLGG----LSIRSLREDGIEPMAIASLLARL 270 (445)
T ss_pred cccccCC-C-cccccccCCC----cCHHHHHHCCCCHHHHHHHHHHH
Confidence 6677664 3 5899999863 33322 589999888874
No 45
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.91 E-value=4.9e-05 Score=73.41 Aligned_cols=159 Identities=16% Similarity=0.101 Sum_probs=98.6
Q ss_pred ecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCcch
Q psy3680 42 IQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQQSQVPEH 121 (422)
Q Consensus 42 i~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~e~ 121 (422)
=.|||.+||||...++.+|......|.+.++=|=|.- ......+....|..++..+|++++ .++.||+-.+.
T Consensus 8 PsPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieDtD------~~R~~~~~~~~I~~dL~wlGl~wD--~~~~QS~r~~~ 79 (238)
T cd00807 8 PEPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTN------PEKEEEEYVDSIKEDVKWLGIKPY--KVTYASDYFDQ 79 (238)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCC------CcccchHHHHHHHHHHHHcCCCCC--CceecccCHHH
Confidence 4689999999999999999877776656655555433 223445566788888999999999 47889984332
Q ss_pred -hHHH-HHH--hhccchhhhhcchhHHHHhhhcCCCCccchhhHHHhhhhhhccCccEEeecCchhHHHHHHHHHHHHhc
Q psy3680 122 -TQLA-WVL--TCLCTVNRLNHMPTYVEKCAELKQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFN 197 (422)
Q Consensus 122 -~el~-w~l--~~~~~~~~l~r~~~~K~k~~~~~~~~~gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hielaRdia~r~n 197 (422)
.+.. .++ +...+ . ....... ...++|-+=-+.|=...+.+.|.=|.|...+-..-.-+.+.++
T Consensus 80 Y~~~~~~L~~~g~aY~--------~----~~~~~~~-~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg 146 (238)
T cd00807 80 LYEYAEQLIKKGKAYV--------H----HRTGDKW-CIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALR 146 (238)
T ss_pred HHHHHHHHHHcCCeec--------C----CCCCCCE-EEEeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHHcC
Confidence 2222 111 11121 0 0000000 1124444444555556799999999999887776666777776
Q ss_pred cccCccCCCCeecccCCCCcccccCCCCCcccccCCC
Q psy3680 198 NKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDL 234 (422)
Q Consensus 198 ~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~ 234 (422)
- +.|..+. ...+ +.+ ++|+||+..
T Consensus 147 ~------~~P~~~~----~~hl-n~~--g~kLSKR~~ 170 (238)
T cd00807 147 L------YRPHQWE----FSRL-NLT--YTVMSKRKL 170 (238)
T ss_pred C------CCCceeE----EEEE-CCC--CCCccCcCc
Confidence 2 3554332 1222 433 589999975
No 46
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=4.5e-05 Score=80.46 Aligned_cols=178 Identities=24% Similarity=0.335 Sum_probs=111.9
Q ss_pred EEEee--cCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q psy3680 38 IFSGI--QPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQQ 115 (422)
Q Consensus 38 i~tGi--~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~q 115 (422)
|.+=| .|||.|||||...|+.+|.-.+..|-++++=|=|.-. .....+....|..++.-+|++++.. +|+|
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiEDTD~------~R~~~e~~~~I~~~L~WLGl~wde~-~~~Q 82 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDTDP------ERETPEAEDAILEDLEWLGLDWDEG-PYYQ 82 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecCCCC------CCCCHHHHHHHHHHHHhcCCCCCCc-eeeh
Confidence 44444 4679999999999999998888777677777766442 2233455566777888899999975 7999
Q ss_pred CCCcc-hhHH-HHHH------hhccchhhhhcc----------h-hHH---------HHhhh---c---------C--CC
Q psy3680 116 SQVPE-HTQL-AWVL------TCLCTVNRLNHM----------P-TYV---------EKCAE---L---------K--QS 153 (422)
Q Consensus 116 Sdi~e-~~el-~w~l------~~~~~~~~l~r~----------~-~~K---------~k~~~---~---------~--~~ 153 (422)
|+-.+ +.+. .+++ .|.+|-.+++.+ + .|- ++... . . ..
T Consensus 83 S~r~~~Y~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~~~~L~~~~~~~~~~~~~~~viR~k~~~~~~ 162 (472)
T COG0008 83 SERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRDERNLTLFEKMADLGEGGPAVVRLKIPMAHP 162 (472)
T ss_pred hhhHHHHHHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCchhhccchHHHHhhcccCCCeEEEEeCCCCCC
Confidence 99544 3333 3443 488888655543 1 111 01110 0 0 00
Q ss_pred -------CccchhhH------HHhhhhhhc------------cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCe
Q psy3680 154 -------PTGLFLYP------VLQAADILL------------YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQ 208 (422)
Q Consensus 154 -------~~gl~~YP------vLqAaDil~------------~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~ 208 (422)
-.|.+..+ +++-+|.+. .+.++|.-|.|+..+=..-+-|.+.|+ ++.|.
T Consensus 163 ~~~~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg------~~~P~ 236 (472)
T COG0008 163 GPVFRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALG------WPPPV 236 (472)
T ss_pred CCccccceeeeEecCccCCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcC------CCCCc
Confidence 01222222 333333333 378999999999888777777777676 34566
Q ss_pred ecccCCCCcccccCCCCCcccccCCC
Q psy3680 209 LLPQDESAGKVKSLKDPSKKMSKSDL 234 (422)
Q Consensus 209 ~li~~~~~~~lp~L~~~~~KMSKS~~ 234 (422)
..+ .++|.+ .+ |+|||||..
T Consensus 237 ~~H----~~li~~-~~-g~kLSKr~~ 256 (472)
T COG0008 237 YAH----LPLLLN-ED-GKKLSKRKG 256 (472)
T ss_pred EEE----eeeeec-CC-CCeecCccC
Confidence 665 677777 33 579999986
No 47
>PLN02627 glutamyl-tRNA synthetase
Probab=97.87 E-value=0.00017 Score=76.98 Aligned_cols=200 Identities=23% Similarity=0.288 Sum_probs=122.3
Q ss_pred CcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceE---
Q psy3680 35 PQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSI--- 111 (422)
Q Consensus 35 ~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~--- 111 (422)
+.++=..=.|||.+||||...++.+|.-....|.++++-|-|.-. .....+....|..++.-+||+++...
T Consensus 45 ~vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIEDTD~------~R~~~e~~~~I~~~L~WLGl~wDegp~~g 118 (535)
T PLN02627 45 PVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDL------ARSTKESEEAVLRDLKWLGLDWDEGPDVG 118 (535)
T ss_pred ceEEEeCCCCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCC------CCCChHHHHHHHHHHHHcCCCCCcCcccC
Confidence 345544556789999999999999999888887777766666432 22334556677888888999998642
Q ss_pred ----EEEcCCCcch-hHHHHH-------Hhhccchhhhhcchh----------HHH------------Hhhhc-------
Q psy3680 112 ----LFQQSQVPEH-TQLAWV-------LTCLCTVNRLNHMPT----------YVE------------KCAEL------- 150 (422)
Q Consensus 112 ----i~~qSdi~e~-~el~w~-------l~~~~~~~~l~r~~~----------~K~------------k~~~~------- 150 (422)
-|.||+-.+. .+..-. .-|+++-.++..+-. |.. +....
T Consensus 119 g~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l~~ee~~~~~~~g~~~~iR~ 198 (535)
T PLN02627 119 GEYGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPPRYTGKWATASDEEVQAELAKGTPYTYRF 198 (535)
T ss_pred CCCCCeeeeccHHHHHHHHHHHHHcCCeeeccCChHHHHHHHHHHHhcCCCcCCCCccccCCHHHHHHHHhCCCCceEEE
Confidence 4899985443 222211 348888777653211 100 00000
Q ss_pred ---C-C------CCccchh----------------hHHHh---hhhhhccCccEEeecCchhHHHHHHHHHHHHhccccC
Q psy3680 151 ---K-Q------SPTGLFL----------------YPVLQ---AADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFD 201 (422)
Q Consensus 151 ---~-~------~~~gl~~----------------YPvLq---AaDil~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g 201 (422)
+ + .-.|... ||..+ +.|=...+.++|.=|.|...+----.-|.+.++
T Consensus 199 k~p~~~~~~~~D~i~G~i~~~~~~~~D~Vi~R~DG~PtY~fA~vVDD~~mgITHViRG~D~l~nTpkQi~ly~aLg---- 274 (535)
T PLN02627 199 RVPKEGSVKIDDLIRGEVSWNTDTLGDFVLLRSNGQPVYNFCVAVDDATMGITHVIRAEEHLPNTLRQALIYKALG---- 274 (535)
T ss_pred EcCCCCceEEEeeeeeeeeeccccCCCeEEEecCCCccccccceecccccCCcEEEechhhhcChHHHHHHHHHcC----
Confidence 0 0 0011111 11111 112222478899999998877666666666676
Q ss_pred ccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC------CHHHHHHHhhhh
Q psy3680 202 KIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD------PPEVIVRKCKKA 256 (422)
Q Consensus 202 ~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D------sp~~I~kKI~~A 256 (422)
+..|+..+ .++|.+-+ ++||||.++ .+.+.+ .|+.|.+.+...
T Consensus 275 --~~~P~f~H----lpli~~~~--g~KLSKR~~----~~~v~~~r~~G~~PeAi~nyla~L 323 (535)
T PLN02627 275 --FPMPRFAH----VSLILAPD--RSKLSKRHG----ATSVGQFREMGYLPDAMVNYLALL 323 (535)
T ss_pred --CCCCeEEE----ccceeCCC--CCccccccC----CccHHHHHHCCCCHHHHHHHHHHh
Confidence 34676665 67777643 589999986 344432 688888888764
No 48
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=97.85 E-value=9.9e-05 Score=77.18 Aligned_cols=190 Identities=23% Similarity=0.293 Sum_probs=118.2
Q ss_pred cCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCcc-h
Q psy3680 43 QPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQQSQVPE-H 121 (422)
Q Consensus 43 ~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~e-~ 121 (422)
.|||.+||||...++.+|.-....|.+.++-|-|.-. .....+....+..++..+|++++. .|.||+-.+ +
T Consensus 7 SPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiEDTD~------~R~~~e~~~~I~~~L~WlGl~wDe--~y~QSeR~~~Y 78 (433)
T PRK12410 7 SPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDK------ERNIEGKDKEILEILNLFGISWDK--LVYQSENLKFH 78 (433)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCC------CcCChHHHHHHHHHHHHcCCCCCC--CeehhccHHHH
Confidence 5999999999999999999888887777776666442 122345566778888889999985 689999543 3
Q ss_pred hHHHHH-------Hhhccchhhhhcchh----------HHHHhh---------h----------cC------C-------
Q psy3680 122 TQLAWV-------LTCLCTVNRLNHMPT----------YVEKCA---------E----------LK------Q------- 152 (422)
Q Consensus 122 ~el~w~-------l~~~~~~~~l~r~~~----------~K~k~~---------~----------~~------~------- 152 (422)
.+..-. .-|++|..++...-. |....+ . .+ +
T Consensus 79 ~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~~~~g~~~~iR~k~p~~~~~f~D~v~G~i~ 158 (433)
T PRK12410 79 RQMAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEVLNCNKPFVVRLKKPNHTMSFTDAIKGEVS 158 (433)
T ss_pred HHHHHHHHHcCCeeeecCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHHHhcCCCeEEEEEcCCCceeeeeccceeEE
Confidence 332221 348888887753311 111000 0 00 0
Q ss_pred ---CCc---------cchhhHHHhhhhhhccCccEEeecCchhHHHHHHHHHHHHhccccCccCCCC-eecccCCCCccc
Q psy3680 153 ---SPT---------GLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIP-QLLPQDESAGKV 219 (422)
Q Consensus 153 ---~~~---------gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P-~~li~~~~~~~l 219 (422)
.++ |..+|-+==+.|=...+.++|.=|.|...+----.-|.+.++ +..| +..+ .|.|
T Consensus 159 ~~~~~~~D~Vi~R~Dg~PtY~fA~vVDD~~mgIThViRG~d~l~~tp~Qi~Ly~aLg------~~~pp~f~H----lpli 228 (433)
T PRK12410 159 FEPDEIDSFVILRADKTPTYNFACAVDDMLYDISLIIRGEDHVSNTPKQILIREALG------YNKEITYAH----LPII 228 (433)
T ss_pred eccccCCCeEEEcCCCCccccccchhchhhcCCCEEEechhhhhCcHHHHHHHHHcC------CCCCCeEEE----eeee
Confidence 001 111222222222233578999999999887766666666676 3333 5555 6677
Q ss_pred ccCCCCCcccccCCCCCCCcEeccC------CHHHHHHHhhhh
Q psy3680 220 KSLKDPSKKMSKSDLDSNSKIEITD------PPEVIVRKCKKA 256 (422)
Q Consensus 220 p~L~~~~~KMSKS~~n~~s~I~L~D------sp~~I~kKI~~A 256 (422)
.+-+ ++||||.++. ..+.+ .|+.|.+.+...
T Consensus 229 ~~~~--g~KLSKR~~~----~~v~~~r~~G~~PeAi~n~l~~l 265 (433)
T PRK12410 229 LNEE--GKKMSKRDNA----SSVKWLLEQGFLPSAIANYLILL 265 (433)
T ss_pred eCCC--CCeeecccCh----hhHHHHHHCCCCHHHHHHHHHHh
Confidence 7753 5899999873 33332 588888888764
No 49
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=97.77 E-value=0.00023 Score=71.61 Aligned_cols=175 Identities=22% Similarity=0.218 Sum_probs=105.5
Q ss_pred ecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCcch
Q psy3680 42 IQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQQSQVPEH 121 (422)
Q Consensus 42 i~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~e~ 121 (422)
=.|||.|||||...++.+|......|-+.++=|-|.-. .....+....+..++..+|++++ ...+.||+-.+.
T Consensus 8 PsPtG~lHiG~~r~al~n~~~Ar~~~G~~iLRieDtD~------~R~~~~~~~~i~~~L~wlGl~~D-~~~~~QS~r~~~ 80 (314)
T PF00749_consen 8 PSPTGYLHIGHARTALLNYLFARKYGGKFILRIEDTDP------ERCRPEFYDAILEDLRWLGLEWD-YGPYYQSDRLEI 80 (314)
T ss_dssp --SSSS-BHHHHHHHHHHHHHHHHTTSEEEEEEETSST------TTCHHHHHHHHHHHHHHHT---S-TCEEEGGGGHHH
T ss_pred CCCCCCcccchhHHHHHHHHHHhccCceEEEecccccc------ccchhhHHHHHHhheeEEEEecC-CeEEeHHHHHHH
Confidence 36899999999999999998877777676666666431 22334556678888888999997 356789985443
Q ss_pred hHH-HH-H------HhhccchhhhhcchhH------------HHHh--------h----h----------cCCC------
Q psy3680 122 TQL-AW-V------LTCLCTVNRLNHMPTY------------VEKC--------A----E----------LKQS------ 153 (422)
Q Consensus 122 ~el-~w-~------l~~~~~~~~l~r~~~~------------K~k~--------~----~----------~~~~------ 153 (422)
.+- .- + ..|.+|-.++...-.- -.+. . . ....
T Consensus 81 Y~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~~~~~D 160 (314)
T PF00749_consen 81 YQEAAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPMESPIAFRD 160 (314)
T ss_dssp HHHHHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSSTCCEEEEE
T ss_pred HHHHHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeeccccccccccc
Confidence 222 11 1 2478887766543211 1110 0 0 0000
Q ss_pred --------------------CccchhhHHHhhhhhhccCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccC
Q psy3680 154 --------------------PTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQD 213 (422)
Q Consensus 154 --------------------~~gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~ 213 (422)
.=|..+|-+=-+.|=...+.++|.=|.|...+-..-.-|.+.++. +.|...+
T Consensus 161 ~v~g~i~~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg~------~~P~~~H-- 232 (314)
T PF00749_consen 161 LVRGRIIFDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALGW------PPPPYAH-- 232 (314)
T ss_dssp TTTEEEEEEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCTS------SS-EEEE--
T ss_pred CcceeeeeccccCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhCC------CCcceEe--
Confidence 112233433334444445899999999999988888888888873 3466555
Q ss_pred CCCcccccCCCCCcccccCCCC
Q psy3680 214 ESAGKVKSLKDPSKKMSKSDLD 235 (422)
Q Consensus 214 ~~~~~lp~L~~~~~KMSKS~~n 235 (422)
.+.+.+.+ ++|+||++..
T Consensus 233 --~pl~l~~~--g~kLSKR~~~ 250 (314)
T PF00749_consen 233 --LPLILNED--GKKLSKRKGA 250 (314)
T ss_dssp --EEEEEETT--SSBSSTTCSH
T ss_pred --eeeeecCC--CcEechhhcc
Confidence 56666653 5899999874
No 50
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.76 E-value=0.00016 Score=77.81 Aligned_cols=182 Identities=21% Similarity=0.258 Sum_probs=112.3
Q ss_pred CCcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q psy3680 34 FPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILF 113 (422)
Q Consensus 34 ~~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~ 113 (422)
...+...+=.|||.+||||...++.+|.-....|.++++=+-|.-.-+ ..........|..++..+|++++. ++
T Consensus 100 g~V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDTDpk~----~R~~~e~~~~I~edL~wLGl~wD~--~~ 173 (567)
T PRK04156 100 GKVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRT----KRPDPEAYDMILEDLKWLGVKWDE--VV 173 (567)
T ss_pred CeEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccCCCCc----ccchHHHHHHHHHHHHHcCCCCCC--cc
Confidence 346677888899999999999999999777666666666666653211 122344456788888889999984 68
Q ss_pred EcCCCcc-hhHHHH-H------Hhhccchhhhhcch-----------hHHH------Hh--------------hhc---C
Q psy3680 114 QQSQVPE-HTQLAW-V------LTCLCTVNRLNHMP-----------TYVE------KC--------------AEL---K 151 (422)
Q Consensus 114 ~qSdi~e-~~el~w-~------l~~~~~~~~l~r~~-----------~~K~------k~--------------~~~---~ 151 (422)
.||+..+ +.+..- + ..|.++-.++.... +..+ ++ +.. .
T Consensus 174 ~qSdr~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~ 253 (567)
T PRK04156 174 IQSDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHP 253 (567)
T ss_pred CcccCHHHHHHHHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCC
Confidence 9999543 333322 1 24777666553210 0000 00 000 0
Q ss_pred CCC------------------ccchhhHHHh---hhhhhccCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeec
Q psy3680 152 QSP------------------TGLFLYPVLQ---AADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLL 210 (422)
Q Consensus 152 ~~~------------------~gl~~YPvLq---AaDil~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~l 210 (422)
+.+ -+...||.++ +.|--..+.++|.-|.|...+-..-.-+.+.++. ..|...
T Consensus 254 n~~~rD~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg~------~~P~~~ 327 (567)
T PRK04156 254 NPSVRDWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFGW------EYPETI 327 (567)
T ss_pred CCCccccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcCC------CCceEE
Confidence 000 0112345443 3333446899999999999888887777777763 357666
Q ss_pred ccCCCCcccccCCCCCcccccCCC
Q psy3680 211 PQDESAGKVKSLKDPSKKMSKSDL 234 (422)
Q Consensus 211 i~~~~~~~lp~L~~~~~KMSKS~~ 234 (422)
+ .++|. .+ +.|||||..
T Consensus 328 H----~~~L~-~~--g~kLSKR~~ 344 (567)
T PRK04156 328 H----YGRLK-IE--GFVLSTSKI 344 (567)
T ss_pred E----cceec-CC--Cceeecccc
Confidence 5 55654 33 479999973
No 51
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=97.74 E-value=0.0001 Score=74.04 Aligned_cols=81 Identities=23% Similarity=0.308 Sum_probs=47.2
Q ss_pred cCCCccchhhHHHHHH--HHHHHHH-cCCcEEEE-eeCceeec-------cCCCHHHH-HHHHHHHHHHHHHcCCCCCce
Q psy3680 43 QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFC-IVDLHSIT-------IKQKHKDL-KENIQLMAASLLACGIDPQKS 110 (422)
Q Consensus 43 ~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~il-IaD~hAlt-------~~~~~~~i-~~~~~~i~a~~lA~Gldp~k~ 110 (422)
-|+|.+||||..+.+. -+.++++ .|.++.+. -.|-|.+- ...++.++ +++..++.+++.+.|+.++--
T Consensus 10 y~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~~d~~ 89 (314)
T cd00812 10 YPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFSYDWR 89 (314)
T ss_pred CCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccceecc
Confidence 4679999999887554 3444444 57766433 33444321 02345444 556678888999999977522
Q ss_pred EEEEcCCCcchhHH
Q psy3680 111 ILFQQSQVPEHTQL 124 (422)
Q Consensus 111 ~i~~qSdi~e~~el 124 (422)
..+. ...|++.+.
T Consensus 90 ~~~~-t~~~~~~~~ 102 (314)
T cd00812 90 REFT-TCDPEYYKF 102 (314)
T ss_pred cccc-cCCHHHHHH
Confidence 2222 234555444
No 52
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=97.71 E-value=0.00019 Score=76.49 Aligned_cols=171 Identities=15% Similarity=0.062 Sum_probs=104.6
Q ss_pred ecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCcc-
Q psy3680 42 IQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQQSQVPE- 120 (422)
Q Consensus 42 i~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~e- 120 (422)
=.|||.|||||...++.+|.-....|.++++=+=|.- ......+....|..++..+|++++. ++.||+..+
T Consensus 18 PsPtG~LHiGharaAlln~l~Ar~~gG~~iLRiEDTD------p~R~~~e~~~~I~~dL~WLGl~wD~--~~~qSdr~~~ 89 (523)
T PLN03233 18 PEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTN------PSKEKAEFEESIIEDLGKIEIKPDS--VSFTSDYFEP 89 (523)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCC------CCccchHHHHHHHHHHHHhCCCCCC--CccccccHHH
Confidence 3577999999999999999877776656555444432 1234456677788888889999985 689999644
Q ss_pred hhHHHHH-------Hhhccchhhhhcc--hh---------HHHHhhh--------c---------------CCCCccch-
Q psy3680 121 HTQLAWV-------LTCLCTVNRLNHM--PT---------YVEKCAE--------L---------------KQSPTGLF- 158 (422)
Q Consensus 121 ~~el~w~-------l~~~~~~~~l~r~--~~---------~K~k~~~--------~---------------~~~~~gl~- 158 (422)
+.+..-. ..|.++-.++... .. ..+..+. . .+.+++-+
T Consensus 90 y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~lR~K~d~~~~n~~~~D~V 169 (523)
T PLN03233 90 IRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDNGTLRDPV 169 (523)
T ss_pred HHHHHHHHHHcCCeEecCCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEEEEeCcccCCCCCCcCCE
Confidence 3333322 2488888877421 11 1100000 0 00111110
Q ss_pred -----------------hhHHHhhhhhh---ccCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcc
Q psy3680 159 -----------------LYPVLQAADIL---LYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGK 218 (422)
Q Consensus 159 -----------------~YPvLqAaDil---~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~ 218 (422)
.||..+=|-.+ ..+.++|.-|.|...+-..-.-+.+.++ +..|... .+.
T Consensus 170 i~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~q~~l~~aLg------~~~P~~~-----~f~ 238 (523)
T PLN03233 170 LFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALG------LRRPRIH-----AFA 238 (523)
T ss_pred EEEEcCCcccccCCcccceeccCCceeeeccccCCCeEEechhhhcCCHHHHHHHHHhC------CCCCeee-----eeE
Confidence 24443322221 2478999999999988888888877776 3456542 233
Q ss_pred cccCCCCCcccccCC
Q psy3680 219 VKSLKDPSKKMSKSD 233 (422)
Q Consensus 219 lp~L~~~~~KMSKS~ 233 (422)
..++. +.||||+.
T Consensus 239 rln~~--~~kLSKR~ 251 (523)
T PLN03233 239 RMNFM--NTVLSKRK 251 (523)
T ss_pred EECCC--CCcccccC
Confidence 44554 47999996
No 53
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=97.71 E-value=0.00015 Score=77.55 Aligned_cols=185 Identities=18% Similarity=0.228 Sum_probs=101.2
Q ss_pred EEeecCCCccchhhHHHHHH--HHHHHHH-cCCcEEE--EeeCceeecc------CCCHHHH-HHHHHHHHHHHHHcCCC
Q psy3680 39 FSGIQPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIF--CIVDLHSITI------KQKHKDL-KENIQLMAASLLACGID 106 (422)
Q Consensus 39 ~tGi~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~i--lIaD~hAlt~------~~~~~~i-~~~~~~i~a~~lA~Gld 106 (422)
|+|-.|+|.+|+||..+++. -+.++.+ .|++++. -+.|+-.-+. ...++.+ ......+..+|..+|+.
T Consensus 117 ~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~l~~LgI~ 196 (507)
T PRK01611 117 YVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKEDLDRLGVH 196 (507)
T ss_pred ecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCe
Confidence 67999999999999988765 3444444 6876543 3455442221 0123333 34457788888899998
Q ss_pred CCceEEEEcCCCcchhHHHHHHhhccchhhhh---------cchhHH---HHhhhcCCCCccchhhHHHhhhhhhcc---
Q psy3680 107 PQKSILFQQSQVPEHTQLAWVLTCLCTVNRLN---------HMPTYV---EKCAELKQSPTGLFLYPVLQAADILLY--- 171 (422)
Q Consensus 107 p~k~~i~~qSdi~e~~el~w~l~~~~~~~~l~---------r~~~~K---~k~~~~~~~~~gl~~YPvLqAaDil~~--- 171 (422)
++ .+++.|+.-......+.+......|.+- +...+. .++-. -+=|..+|. +.||-++
T Consensus 197 ~D--~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~~~~~~~~~vl~---ksdG~~~Y~---t~Dia~~~~k 268 (507)
T PRK01611 197 FD--VWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLTEFGDDKDRVLI---KSDGTYTYF---TRDIAYHLYK 268 (507)
T ss_pred ee--EEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEchhhCCCCCeEEE---ECCCCccch---HHHHHHHHHH
Confidence 75 3445554321112222222111111111 111121 00000 022445563 3355442
Q ss_pred ----CccEEeecCchhHHHHHHHHHHHHhccccCccCCCC--e-ecccCCCCcccccCCCCCcccccCCCCCCCcEeccC
Q psy3680 172 ----KATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIP--Q-LLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD 244 (422)
Q Consensus 172 ----~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P--~-~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D 244 (422)
+--+-.+|.||..|+.....+++.++.. .+ . ..+ ....++.+ +.++|||||.+| .|.+.|
T Consensus 269 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~------~~~~~~~~h--~~~glv~~--~~g~KMSkR~Gn---~i~l~d 335 (507)
T PRK01611 269 FERFDRVIYVVGADHHGHFKRLKAALKALGYD------PDALEVLLH--QMVGLVRG--GEGVKMSTRAGN---VVTLDD 335 (507)
T ss_pred HhhcCEEEEEECCChHHHHHHHHHHHHHcCCC------cccceEEEE--EEEEeeEC--CCCCcccCCCCc---eeEHHH
Confidence 3445589999999999999999988742 11 1 222 12334433 235799999987 998865
No 54
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=97.68 E-value=0.00068 Score=71.83 Aligned_cols=209 Identities=13% Similarity=0.075 Sum_probs=110.4
Q ss_pred cCCCcEEEEeecCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEee-Cceee--c-----cCCCHHHH-HHHHHHHHHH
Q psy3680 32 ISFPQRIFSGIQPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIV-DLHSI--T-----IKQKHKDL-KENIQLMAAS 99 (422)
Q Consensus 32 ~~~~~~i~tGi~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIa-D~hAl--t-----~~~~~~~i-~~~~~~i~a~ 99 (422)
.++.....||..|.|.+||||..+.+. -+.++++ .|+++.+..+ |-|.- + ...+|.++ +.....+..+
T Consensus 19 ~~~v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~d 98 (465)
T TIGR00435 19 QGKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFED 98 (465)
T ss_pred CCcceEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 445556678999999999999877654 3444444 6888766655 44421 1 12355555 4556778888
Q ss_pred HHHcCCCCCceEEEEcCC-CcchhH------------------HHHHHhhccchhhhhcch--hHHH--Hh------hhc
Q psy3680 100 LLACGIDPQKSILFQQSQ-VPEHTQ------------------LAWVLTCLCTVNRLNHMP--TYVE--KC------AEL 150 (422)
Q Consensus 100 ~lA~Gldp~k~~i~~qSd-i~e~~e------------------l~w~l~~~~~~~~l~r~~--~~K~--k~------~~~ 150 (422)
+.++|+.++... ..-|+ +++..+ .+|-..|+-..|.|.+.. .... ++ +.+
T Consensus 99 l~~LgI~~d~~~-~raT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~~yG~ls~~~~~~~~~~~~~~~~~~K~~p 177 (465)
T TIGR00435 99 MKALNVLPPDLE-PRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFKDYGKLSKQDLDQLEAGARVDVDEAKRNK 177 (465)
T ss_pred HHHhCCCCCcCC-ccccccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccchhccCCCCCHHHHhcccccCcccccCCC
Confidence 999999755321 01111 111100 011122333334333221 0000 00 000
Q ss_pred ----------CC-----C-----CccchhhHHHhhhhhhccCccEEeecCchh-HHHHHHHHHHHHhccccCccCCCCee
Q psy3680 151 ----------KQ-----S-----PTGLFLYPVLQAADILLYKATHIPAGLDQI-HNINLANHLTQLFNNKFDKIFPIPQL 209 (422)
Q Consensus 151 ----------~~-----~-----~~gl~~YPvLqAaDil~~~a~~vpvG~DQ~-~hielaRdia~r~n~~~g~~f~~P~~ 209 (422)
.+ . -.|.-+=..-|+..+|-...|+..+|.|.. +|++--+-....+ +|..+ +..
T Consensus 178 ~DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~~~~lg~~~Dih~gG~Dl~fpHhene~aqs~a~---~g~~~--~~~ 252 (465)
T TIGR00435 178 LDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIFPHHENEIAQSEAA---FGKQL--AKY 252 (465)
T ss_pred CCceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHHHHhcCCCceeeccccccccchHHHHHHHHHHh---cCCCC--CcE
Confidence 01 1 122233334456777777799999999994 6776554443333 23211 222
Q ss_pred cccCCCCcccccCCCCCcccccCCCCCCCcEeccC-----CHHHHHHHhhh
Q psy3680 210 LPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD-----PPEVIVRKCKK 255 (422)
Q Consensus 210 li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D-----sp~~I~kKI~~ 255 (422)
.+ .+.+| .++ ++|||||.+| .|.+.| +|+.++=.+.+
T Consensus 253 ~~---h~g~v-~~~--g~KMSKS~GN---~i~~~dll~~~~~dalR~~ll~ 294 (465)
T TIGR00435 253 WM---HNGFL-MID--NEKMSKSLGN---FFTVRDVLKNYDPEILRYFLLS 294 (465)
T ss_pred EE---EeeEE-Eec--CccccccCCC---cCCHHHHHHHCCHHHHHHHHHh
Confidence 22 12232 343 4799999987 887755 56666665554
No 55
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=97.59 E-value=0.00033 Score=75.67 Aligned_cols=175 Identities=13% Similarity=0.056 Sum_probs=106.0
Q ss_pred EeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCc
Q psy3680 40 SGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQQSQVP 119 (422)
Q Consensus 40 tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~ 119 (422)
..=.|||.|||||...++.+|......|-.+++=+=|.- ......+....|..++..+|++++.- ++.||+..
T Consensus 57 FAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRiEDTD------p~R~~~e~~d~IleDL~WLGl~wDe~-~~~QSdr~ 129 (601)
T PTZ00402 57 FPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTN------PSKEKEHFEQAILDDLATLGVSWDVG-PTYSSDYM 129 (601)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCC------CcccCHHHHHHHHHHHHHCCCCCCCc-eeeccccH
Confidence 344677999999999999999877776656555444432 12244566778888999999999753 67899964
Q ss_pred c-hhHHHHH-------Hhhccchhhhhcc------hhHHHH-----------hhhc---C--------------CCCccc
Q psy3680 120 E-HTQLAWV-------LTCLCTVNRLNHM------PTYVEK-----------CAEL---K--------------QSPTGL 157 (422)
Q Consensus 120 e-~~el~w~-------l~~~~~~~~l~r~------~~~K~k-----------~~~~---~--------------~~~~gl 157 (422)
+ +.+..-. ..|.++-.+|... ..+.++ +... + +.+++-
T Consensus 130 d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~lR~kid~~~~n~~~rD 209 (601)
T PTZ00402 130 DLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCLRAKISVDNENKAMRD 209 (601)
T ss_pred HHHHHHHHHHHHcCCEEEecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceEEEEecccCCCCCCccC
Confidence 4 3333222 2577876666322 111111 0000 0 001100
Q ss_pred -h-----------------hhHHHhhh---hhhccCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCC
Q psy3680 158 -F-----------------LYPVLQAA---DILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESA 216 (422)
Q Consensus 158 -~-----------------~YPvLqAa---Dil~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~ 216 (422)
. .||..+=| |=...+.++|.-|.|...+-..-.-+.+.++ +..|...+ .
T Consensus 210 ~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg------~~~P~~~h----~ 279 (601)
T PTZ00402 210 PVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALG------IRKPIVED----F 279 (601)
T ss_pred CEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhC------CCCceEEE----E
Confidence 0 23332211 1112478999999999988888777777776 34566655 4
Q ss_pred cccccCCCCCcccccCCC
Q psy3680 217 GKVKSLKDPSKKMSKSDL 234 (422)
Q Consensus 217 ~~lp~L~~~~~KMSKS~~ 234 (422)
++ .+++ +.||||+..
T Consensus 280 ~r-Ln~~--g~kLSKRkl 294 (601)
T PTZ00402 280 SR-LNME--YSVMSKRKL 294 (601)
T ss_pred ee-EcCC--CCcccccCC
Confidence 44 4654 479999975
No 56
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=97.49 E-value=0.0011 Score=62.90 Aligned_cols=185 Identities=18% Similarity=0.154 Sum_probs=94.9
Q ss_pred EEeecCCCccchhhHHHHHH--HHHHHHH-cCCcEEEE-eeCceee-c-c----CCCHHHHH-HHHHHHHHHHHHcCCCC
Q psy3680 39 FSGIQPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFC-IVDLHSI-T-I----KQKHKDLK-ENIQLMAASLLACGIDP 107 (422)
Q Consensus 39 ~tGi~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~il-IaD~hAl-t-~----~~~~~~i~-~~~~~i~a~~lA~Gldp 107 (422)
|++--|+|.+||||..+++. -+.++.+ .|++++.. ..|-|.. + . ...+.++. .....+..++.+.|+.+
T Consensus 6 ~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 85 (212)
T cd00671 6 FVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRLDVRF 85 (212)
T ss_pred ecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 66778999999999887654 3444444 68776522 2222221 1 0 11233333 34466778888899876
Q ss_pred CceEEEEcCCCcchhHHHHH-H-hh-ccc--hhhh-hcchhHHHHhhhcCCCCccchhhHH---HhhhhhhccCccEE--
Q psy3680 108 QKSILFQQSQVPEHTQLAWV-L-TC-LCT--VNRL-NHMPTYVEKCAELKQSPTGLFLYPV---LQAADILLYKATHI-- 176 (422)
Q Consensus 108 ~k~~i~~qSdi~e~~el~w~-l-~~-~~~--~~~l-~r~~~~K~k~~~~~~~~~gl~~YPv---LqAaDil~~~a~~v-- 176 (422)
+ .+++.|+........|. | .. +.. -|.. -....+++-....---+=|..+|.. -.+.|=+.+++|.+
T Consensus 86 d--~~~~es~~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~~~~~d~vl~rsdG~~~Y~~~DlA~~~~~~~~~~~~~i~ 163 (212)
T cd00671 86 D--VWFGESSYLGLMGKVVELLEELGLLYEEDGALWLDLTEFGDDKDRVLVRSDGTYTYFTRDIAYHLDKFERGADKIIY 163 (212)
T ss_pred c--eecchhhhhhHHHHHHHHHHHCCCEEEeCCcEEEechhhCCCCCeEEEECCCCccchHHHHHHHHHHHhcCCCEEEE
Confidence 5 34566664222111221 1 10 000 0000 0011111000000001235566752 22222222578888
Q ss_pred eecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCC
Q psy3680 177 PAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDL 234 (422)
Q Consensus 177 pvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~ 234 (422)
.+|.||..|+..-..+++.++.. ..|...+ ...++|.. .+ ++||||..+
T Consensus 164 v~g~~~~~~~~~~~~~~~~lg~~-----~~~~~~h--~~~~~v~~-~~-~~kmS~R~G 212 (212)
T cd00671 164 VVGADHHGHFKRLFAALELLGYD-----EAKKLEH--LLYGMVNL-PK-EGKMSTRAG 212 (212)
T ss_pred EECCCHHHHHHHHHHHHHHcCCC-----CCCCeEE--EEEEeEEc-CC-CCCCCCCCC
Confidence 99999999999999999998742 1233333 12456644 33 479999853
No 57
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.0013 Score=69.33 Aligned_cols=70 Identities=24% Similarity=0.341 Sum_probs=45.6
Q ss_pred hhhccCccEEeecCchhH---HHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEecc
Q psy3680 167 DILLYKATHIPAGLDQIH---NINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEIT 243 (422)
Q Consensus 167 Dil~~~a~~vpvG~DQ~~---hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~ 243 (422)
=+..+++|+.|-|.|+.- -..-+++|++.+ || ++.|.++.- -.+ +|.+ ++|||||.+| .|.+.
T Consensus 224 RW~~lgVd~EPfGKDH~a~ggSydtg~~I~~ei---~g--~~pP~~~~Y----E~i-~lkg-~~~mSsSkG~---~i~~~ 289 (521)
T COG1384 224 RWAALGVDFEPFGKDHAAAGGSYDTGKRIAREI---FG--YEPPVPFVY----EWI-LLKG-GGKMSSSKGN---VISLS 289 (521)
T ss_pred hhhccCcccccCCcccccccCchHHHHHHHHHh---cC--CCCCCCCce----EEE-EecC-CcccccCCCc---EEcHH
Confidence 344478999999999874 455666676643 44 345655542 122 4444 5899999887 88887
Q ss_pred C-----CHHHHH
Q psy3680 244 D-----PPEVIV 250 (422)
Q Consensus 244 D-----sp~~I~ 250 (422)
| .|+.++
T Consensus 290 dwlev~~pE~lr 301 (521)
T COG1384 290 DWLEVAPPEVLR 301 (521)
T ss_pred HHHHhcCHhHee
Confidence 6 455544
No 58
>PLN02859 glutamine-tRNA ligase
Probab=97.30 E-value=0.0015 Score=72.54 Aligned_cols=192 Identities=16% Similarity=0.125 Sum_probs=114.0
Q ss_pred chhhhhhhhccccCCCcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHH-HHHHHHHHHHH
Q psy3680 20 SGQQIRHYSDHKISFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHK-DLKENIQLMAA 98 (422)
Q Consensus 20 ~~~~i~~~~~~~~~~~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~-~i~~~~~~i~a 98 (422)
+.+.+++=++. .+.+.+.=..=.|||.|||||...++.+|.-....|..+++-+=|. |++ ...+....|..
T Consensus 250 ~~~~~~~hl~~-t~g~V~tRFaPsPtG~LHiGharaallN~~~Ar~~~G~~~LRieDT-------dp~r~~~e~~~~I~e 321 (788)
T PLN02859 250 TKEILEKHLKA-TGGKVYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDT-------NPEAEKKEYIDHIEE 321 (788)
T ss_pred cHHHHHHHHhh-cCCceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCC-------CCCccchHHHHHHHH
Confidence 33455533322 3334455556678899999999999999987777665655544443 232 34556677788
Q ss_pred HHHHcCCCCCceEEEEcCCCc-chhHHHHH-------Hhhccchhhhhcch------hHHHH-----------hhhc---
Q psy3680 99 SLLACGIDPQKSILFQQSQVP-EHTQLAWV-------LTCLCTVNRLNHMP------TYVEK-----------CAEL--- 150 (422)
Q Consensus 99 ~~lA~Gldp~k~~i~~qSdi~-e~~el~w~-------l~~~~~~~~l~r~~------~~K~k-----------~~~~--- 150 (422)
++.-+|++|++ ++.||+.. ++.+.+-. ..|+++..+|...- .+.++ +...
T Consensus 322 dL~WLG~~~d~--~~~qSd~f~~~Y~~A~~Li~~G~AY~C~ct~eei~~~R~~~~~sp~Rd~s~eenl~lfe~m~~g~~~ 399 (788)
T PLN02859 322 IVEWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIEESLKLFEDMRRGLIE 399 (788)
T ss_pred HHHHcCCCCCC--cccccHhHHHHHHHHHHHHHcCCeEeccCCHHHHHHHHhhhccCCCCCCChHHhhhhhHHHHhchhc
Confidence 88889999985 67899965 45554322 24788877663211 00000 0000
Q ss_pred CC-------CC-----------------------c--cchhhHHHhhhhhh---ccCccEEeecCchhHHHHHHHHHHHH
Q psy3680 151 KQ-------SP-----------------------T--GLFLYPVLQAADIL---LYKATHIPAGLDQIHNINLANHLTQL 195 (422)
Q Consensus 151 ~~-------~~-----------------------~--gl~~YPvLqAaDil---~~~a~~vpvG~DQ~~hielaRdia~r 195 (422)
++ ++ . -..+||..-=|-.+ +.+.++++.|.|...|-..-.-+.+.
T Consensus 400 ~G~~vlR~Kid~~~~n~~~rD~V~~RI~~~~h~rtgdk~~iyPtYdFA~~vdD~legITHvLRg~E~~~~~~~y~wl~~a 479 (788)
T PLN02859 400 EGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLDS 479 (788)
T ss_pred cCCeEEEEeccCCCCCceeeeceeEEEeccCCCccCCCeEEEecccccccccccccCCceEeechhhhcCCHHHHHHHHH
Confidence 00 00 0 01235544322221 14899999999998888777777777
Q ss_pred hccccCccCCCCeecccCCCCcccccCCCCCcccccCCC
Q psy3680 196 FNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDL 234 (422)
Q Consensus 196 ~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~ 234 (422)
++ +..|...+ .+ +.+++ +.||||+..
T Consensus 480 Lg------~~~P~~~~----f~-rLn~~--~t~LSKRkl 505 (788)
T PLN02859 480 LG------LYQPYVWE----YS-RLNVT--NTVMSKRKL 505 (788)
T ss_pred cC------CCCCcEEe----ee-eECCC--CCcccCcCc
Confidence 76 23565554 44 34664 479999975
No 59
>PLN02907 glutamate-tRNA ligase
Probab=97.20 E-value=0.00092 Score=74.27 Aligned_cols=175 Identities=13% Similarity=0.083 Sum_probs=103.2
Q ss_pred EEEee--cCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q psy3680 38 IFSGI--QPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQQ 115 (422)
Q Consensus 38 i~tGi--~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~q 115 (422)
|.|=| .|||.+||||...++.+|.-....|-++++-+=|.-. .....+....|..++.-+|+++++ ++.|
T Consensus 214 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLR~eDTdp------~r~~~e~~~~I~~dl~wLG~~~d~--~~~q 285 (722)
T PLN02907 214 VCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDTNP------SKESDEFVENILKDIETLGIKYDA--VTYT 285 (722)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCC------CcCChHHHHHHHHHHHHcCCCCCC--cccc
Confidence 44444 5679999999999999997776666566555544321 123345566778888889999986 5789
Q ss_pred CCCcc-hhHHHHH-------Hhhccchhhhhcch-----------hHHHH------hhh--c---------------CCC
Q psy3680 116 SQVPE-HTQLAWV-------LTCLCTVNRLNHMP-----------TYVEK------CAE--L---------------KQS 153 (422)
Q Consensus 116 Sdi~e-~~el~w~-------l~~~~~~~~l~r~~-----------~~K~k------~~~--~---------------~~~ 153 (422)
||..+ +.+..-. ..|.++..++.... +..+. +.. . .+.
T Consensus 286 S~r~~~y~~~a~~Li~~G~aY~~~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~lR~k~d~~~~n~ 365 (722)
T PLN02907 286 SDYFPQLMEMAEKLIKEGKAYVDDTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVRGKLDMQDPNK 365 (722)
T ss_pred cccHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEEcccCCCCC
Confidence 99644 3333222 24777776654211 11110 000 0 011
Q ss_pred Cccch------------------hhHHHhhhhhh---ccCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeeccc
Q psy3680 154 PTGLF------------------LYPVLQAADIL---LYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQ 212 (422)
Q Consensus 154 ~~gl~------------------~YPvLqAaDil---~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~ 212 (422)
++.-+ .||..+=|-.+ ..+.++|.-|.|...+-..-.-+.+.++ ++.|....
T Consensus 366 ~~~D~v~~R~~~~~h~~~gd~~~~~PtY~fa~~vdD~~~gIThvlRg~e~~~~t~~q~~l~~~lg------~~~p~~~~- 438 (722)
T PLN02907 366 SLRDPVYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMG------LRKVHIWE- 438 (722)
T ss_pred CcccCEEEEecCCcccccCCccceeeccCCceEEEcccCCCceEeecHhhhhChHHHHHHHHHcC------CCCCeeEE-
Confidence 11111 24544433222 1478999999999998888777777776 23453222
Q ss_pred CCCCcccccCCCCCcccccCC
Q psy3680 213 DESAGKVKSLKDPSKKMSKSD 233 (422)
Q Consensus 213 ~~~~~~lp~L~~~~~KMSKS~ 233 (422)
.++ .+++ +.||||+.
T Consensus 439 ---f~~-l~~~--~~~lSKR~ 453 (722)
T PLN02907 439 ---FSR-LNFV--YTLLSKRK 453 (722)
T ss_pred ---EEE-EcCC--Cccccccc
Confidence 333 3554 47999997
No 60
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=96.81 E-value=0.013 Score=62.37 Aligned_cols=76 Identities=17% Similarity=0.083 Sum_probs=46.9
Q ss_pred CCCcEE-EEeecCCCccchhhHHHHHH--HHHHHHH-cCCcEEEE--eeCceeec---c-------------CCCHHHH-
Q psy3680 33 SFPQRI-FSGIQPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFC--IVDLHSIT---I-------------KQKHKDL- 89 (422)
Q Consensus 33 ~~~~~i-~tGi~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~il--IaD~hAlt---~-------------~~~~~~i- 89 (422)
...+++ .+|..+-+.+||||..+.+. -+.++.+ .|.+|+++ |.|.--|| + ..++.++
T Consensus 21 ~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a 100 (490)
T PRK14536 21 HGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIA 100 (490)
T ss_pred CCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHH
Confidence 334554 57999999999999887554 3344333 68777666 34441111 1 2355444
Q ss_pred HHHHHHHHHHHHHcCCCCC
Q psy3680 90 KENIQLMAASLLACGIDPQ 108 (422)
Q Consensus 90 ~~~~~~i~a~~lA~Gldp~ 108 (422)
.+.+....+++.++|+.+.
T Consensus 101 ~~~~~~f~~d~~~Lni~~~ 119 (490)
T PRK14536 101 AHYTAAFFRDTARLNIERP 119 (490)
T ss_pred HHHHHHHHHHHHHcCCCCC
Confidence 3445677888888998754
No 61
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=96.33 E-value=0.011 Score=63.63 Aligned_cols=95 Identities=18% Similarity=0.187 Sum_probs=63.6
Q ss_pred EEEEee--cCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q psy3680 37 RIFSGI--QPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQ 114 (422)
Q Consensus 37 ~i~tGi--~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~ 114 (422)
.|.+=| .|||.|||||...++.+|.-.+..|.++++-+=|.- ......+....|..++..+|++++. .++.
T Consensus 29 ~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLRieDTd------~~r~~~e~~~~I~~dL~wLGi~~d~-~~~~ 101 (554)
T PRK05347 29 RVHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTN------PEKEDQEYVDSIKEDVRWLGFDWSG-ELRY 101 (554)
T ss_pred ceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCC------CCcCChHHHHHHHHHHHHcCCCCCC-Ccee
Confidence 344444 567999999999999999877776656555444432 1123445667788888889999943 2688
Q ss_pred cCCCcc-hhHHHHHH-------hhccchhhhh
Q psy3680 115 QSQVPE-HTQLAWVL-------TCLCTVNRLN 138 (422)
Q Consensus 115 qSdi~e-~~el~w~l-------~~~~~~~~l~ 138 (422)
||+..+ +.+.+..| .|.++..++.
T Consensus 102 qS~r~~~~y~~a~~Li~~G~AY~c~cs~eei~ 133 (554)
T PRK05347 102 ASDYFDQLYEYAVELIKKGKAYVDDLSAEEIR 133 (554)
T ss_pred eecCHHHHHHHHHHHHHcCCEeeCCCCHHHHH
Confidence 999644 55554333 4888877664
No 62
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=96.31 E-value=0.082 Score=52.92 Aligned_cols=195 Identities=19% Similarity=0.180 Sum_probs=92.4
Q ss_pred CCcEE-EEeecCCCccchhhHHHHHH--HHHH-HHHcCCcEEEEeeCceeecc---------CCCHHHH-HHHHHHHHHH
Q psy3680 34 FPQRI-FSGIQPTGTLHLGNYFGAVQ--TWSA-LQNKGEDVIFCIVDLHSITI---------KQKHKDL-KENIQLMAAS 99 (422)
Q Consensus 34 ~~~~i-~tGi~PTG~lHLGny~g~i~--~~~~-lq~~g~~~~ilIaD~hAlt~---------~~~~~~i-~~~~~~i~a~ 99 (422)
+.+++ .+|..+-..+||||+...+. -+.+ |...|.++.+ |-+++-+-| ..++.++ ++.+.+...+
T Consensus 7 ~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~-V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~d 85 (300)
T PF01406_consen 7 GKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTY-VMNITDIDDKIIKRAREEGVSPQELARRYEEEFFED 85 (300)
T ss_dssp TEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEE-EEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEE-EEeccccchHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 33444 57999999999999877654 2222 3446766543 333332211 2356655 4456677888
Q ss_pred HHHcCCCCCceEEEEcCC-CcchhHHHHHH------------------hhccchhhhhcchh--HH--HHhh------hc
Q psy3680 100 LLACGIDPQKSILFQQSQ-VPEHTQLAWVL------------------TCLCTVNRLNHMPT--YV--EKCA------EL 150 (422)
Q Consensus 100 ~lA~Gldp~k~~i~~qSd-i~e~~el~w~l------------------~~~~~~~~l~r~~~--~K--~k~~------~~ 150 (422)
+.+.|+.|.... -+-|+ ++++.++.-.| ..+-..|.|.+... .+ .+.+ .+
T Consensus 86 m~~Lnv~~p~~~-prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~~~~YG~Ls~~~~~~l~~~~~~~~~~~K~~p 164 (300)
T PF01406_consen 86 MKALNVLPPDHY-PRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVSKFPDYGKLSNQDLEDLEAGARVEVDYEKRNP 164 (300)
T ss_dssp HHHTT----SEE-EEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCGSTTTTTTTT-SHHHHHHCHHHTT-TTSSST
T ss_pred HHHcCCCCCccc-cchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeeccccccccccccchhhHHhhhhcccccccCCC
Confidence 888888764322 33333 45544442211 12223333333321 10 0110 00
Q ss_pred ----------CC-----CCc-----cchhhHHHhhhhhhccCccEEeecCchh-HHHHHHHHHHHHhccccCccCCCCee
Q psy3680 151 ----------KQ-----SPT-----GLFLYPVLQAADILLYKATHIPAGLDQI-HNINLANHLTQLFNNKFDKIFPIPQL 209 (422)
Q Consensus 151 ----------~~-----~~~-----gl~~YPvLqAaDil~~~a~~vpvG~DQ~-~hielaRdia~r~n~~~g~~f~~P~~ 209 (422)
.+ .+. |.=+=..-|+..++-..-|+.-||.|-. +|+|--+-.++..+.. .|. ..-
T Consensus 165 ~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~g~---~~a-~~W 240 (300)
T PF01406_consen 165 RDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAATGK---PFA-NYW 240 (300)
T ss_dssp T-EEEEEE--TTS--B--TTSSEEE-HHHHHHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHHSS----SE-EEE
T ss_pred cceeeeecccccCCcccCCCccCcCceeeehHHHHHHHcCCCceEEccccccCCCCccchHHHHHHhhCc---hHH-HHH
Confidence 00 122 2244456778888888899999999986 7888766555554321 111 111
Q ss_pred cccCCCCcccccCCCCCcccccCCCCCCCcEeccC
Q psy3680 210 LPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD 244 (422)
Q Consensus 210 li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D 244 (422)
++ +..|. . + ++|||||.+| .|.+.|
T Consensus 241 ~H----~g~l~-~-~-g~KMSKSlgN---~~~i~d 265 (300)
T PF01406_consen 241 MH----NGHLN-V-D-GEKMSKSLGN---FITIRD 265 (300)
T ss_dssp EE----E--EE-E-T-TCE--TTTT------BHHH
T ss_pred HH----HHHHh-h-c-CccccccCCC---EEEHHH
Confidence 22 22222 2 3 4899999987 887743
No 63
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=96.27 E-value=0.012 Score=63.17 Aligned_cols=89 Identities=13% Similarity=0.072 Sum_probs=60.9
Q ss_pred cCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCcc-h
Q psy3680 43 QPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQQSQVPE-H 121 (422)
Q Consensus 43 ~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~e-~ 121 (422)
.|||.|||||...++.+|.-....|.++++-+=|.-. .....+....|..++..+|++++. .++.||+..+ +
T Consensus 8 sPtG~LHiG~ar~al~n~~~A~~~~G~~iLRieDTd~------~r~~~e~~~~I~~dL~wLG~~~d~-~~~~qS~~~~~~ 80 (522)
T TIGR00440 8 EPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNP------VKEDPEYVESIKRDVEWLGFKWEG-KIRYSSDYFDEL 80 (522)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCc------ccCChHHHHHHHHHHHHcCCCCCC-CceEccccHHHH
Confidence 6899999999999999998777766566555544331 223445667788888889999953 2577999543 4
Q ss_pred hHHHHH-------Hhhccchhhhh
Q psy3680 122 TQLAWV-------LTCLCTVNRLN 138 (422)
Q Consensus 122 ~el~w~-------l~~~~~~~~l~ 138 (422)
.+..-. ..|.++-.+|.
T Consensus 81 ~~~a~~Li~~G~AY~c~cs~eel~ 104 (522)
T TIGR00440 81 YRYAEELIKKGLAYVDELTPEEIR 104 (522)
T ss_pred HHHHHHHHHcCCEEeecCCHHHHH
Confidence 443322 24888876654
No 64
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=96.24 E-value=0.01 Score=64.13 Aligned_cols=94 Identities=17% Similarity=0.238 Sum_probs=62.7
Q ss_pred EEEEee--cCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q psy3680 37 RIFSGI--QPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQ 114 (422)
Q Consensus 37 ~i~tGi--~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~ 114 (422)
.|.+=| .|||.+||||...++.+|.-....|.++++=+=|.- ......+....+..++..+|++++. ++.
T Consensus 93 ~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidDTD------p~R~~~e~~~~I~edL~wLGi~~d~--~~~ 164 (560)
T TIGR00463 93 EVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDTD------PRRVKPEAYDMILEDLDWLGVKGDE--VVY 164 (560)
T ss_pred eeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCcCC------cccccHHHHHHHHHHHHHcCCCCCc--ccc
Confidence 344444 567999999999999888766665555555444432 1233445667788888899999984 689
Q ss_pred cCCCc-chhHHHHH-------Hhhccchhhhh
Q psy3680 115 QSQVP-EHTQLAWV-------LTCLCTVNRLN 138 (422)
Q Consensus 115 qSdi~-e~~el~w~-------l~~~~~~~~l~ 138 (422)
||+.. .+.+..-. ..|.++-.++.
T Consensus 165 qSd~~~~y~~~a~~Li~~G~AY~C~cs~eei~ 196 (560)
T TIGR00463 165 QSDRIEEYYDYCRKLIEMGKAYVCDCPPEEFR 196 (560)
T ss_pred ccccHHHHHHHHHHHHHcCCceeecCCHHHHH
Confidence 99953 34443322 35888877764
No 65
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=96.20 E-value=0.012 Score=63.44 Aligned_cols=111 Identities=13% Similarity=0.092 Sum_probs=71.7
Q ss_pred cchhhhhhhhccccCCCcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHH
Q psy3680 19 SSGQQIRHYSDHKISFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAA 98 (422)
Q Consensus 19 ~~~~~i~~~~~~~~~~~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a 98 (422)
.+.+.++.-.+ -.+.+++.=..=.|||.|||||...++.+|.-.+..|..+++-+=|.- ......+....|..
T Consensus 36 ~~~~~~~~~~~-~~~gkv~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~iLRiEDTD------p~r~~~e~~~~I~~ 108 (574)
T PTZ00437 36 NTPELLEKHEA-VTGGKPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDTN------PETEEQVYIDAIME 108 (574)
T ss_pred CCHHHHHHHhc-ccCCcEEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCC------ccccChHHHHHHHH
Confidence 44444443221 123344555566788999999999999999877776656655554432 12244566778888
Q ss_pred HHHHcCCCCCceEEEEcCCCcc-hhHHHHH-------Hhhccchhhhh
Q psy3680 99 SLLACGIDPQKSILFQQSQVPE-HTQLAWV-------LTCLCTVNRLN 138 (422)
Q Consensus 99 ~~lA~Gldp~k~~i~~qSdi~e-~~el~w~-------l~~~~~~~~l~ 138 (422)
++..+|++++. ++.||+..+ +.+..-. ..|.++-.++.
T Consensus 109 dL~wLGi~~D~--~~~qS~y~~~~ye~A~~Li~~G~AY~C~cs~eei~ 154 (574)
T PTZ00437 109 MVKWMGWKPDW--VTFSSDYFDQLHEFAVQLIKDGKAYVDHSTPDELK 154 (574)
T ss_pred HHHHcCCCCCC--CCcCchhHHHHHHHHHHHHHcCCEEEcCCCHHHHH
Confidence 88899999985 458998654 4444322 24888877664
No 66
>PLN02946 cysteine-tRNA ligase
Probab=96.06 E-value=0.061 Score=58.22 Aligned_cols=72 Identities=11% Similarity=0.131 Sum_probs=45.4
Q ss_pred CcEE-EEeecCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEeeCceeecc---------CCCHHHH-HHHHHHHHHHH
Q psy3680 35 PQRI-FSGIQPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIVDLHSITI---------KQKHKDL-KENIQLMAASL 100 (422)
Q Consensus 35 ~~~i-~tGi~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIaD~hAlt~---------~~~~~~i-~~~~~~i~a~~ 100 (422)
.+++ .+|..+-+.+||||..+.+. -+.++.+ .|++|.+ |-+.+-.=+ ..++.++ ++++..+..++
T Consensus 80 ~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~-V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d~ 158 (557)
T PLN02946 80 KVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRY-VRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDM 158 (557)
T ss_pred ceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEE-EECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3444 57888889999999887554 3444444 6776644 444333211 3466665 45567788888
Q ss_pred HHcCCCC
Q psy3680 101 LACGIDP 107 (422)
Q Consensus 101 lA~Gldp 107 (422)
.+.|+.+
T Consensus 159 ~~LnI~~ 165 (557)
T PLN02946 159 AYLHCLP 165 (557)
T ss_pred HHCCCCC
Confidence 8999853
No 67
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=95.99 E-value=0.6 Score=51.69 Aligned_cols=75 Identities=19% Similarity=0.140 Sum_probs=47.1
Q ss_pred CCcEE-EEeecCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEeeCceeecc---------CCCHHHH-HHHHHHHHHH
Q psy3680 34 FPQRI-FSGIQPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIVDLHSITI---------KQKHKDL-KENIQLMAAS 99 (422)
Q Consensus 34 ~~~~i-~tGi~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIaD~hAlt~---------~~~~~~i-~~~~~~i~a~ 99 (422)
...++ .+|..+-..+||||..+.+. -+.++.+ .|++|.++ -+.+-.=+ ..++.++ ++.+.....+
T Consensus 247 ~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV-~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d 325 (699)
T PRK14535 247 ENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYV-RNITDIDDKIIARAAENGETIGELTARFIQAMHED 325 (699)
T ss_pred CceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEE-eCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34444 57888889999999887654 3444444 57665443 33333211 2466655 4456777888
Q ss_pred HHHcCCCCCc
Q psy3680 100 LLACGIDPQK 109 (422)
Q Consensus 100 ~lA~Gldp~k 109 (422)
+.++|+.+..
T Consensus 326 ~~~LnI~~p~ 335 (699)
T PRK14535 326 ADALGVLRPD 335 (699)
T ss_pred HHHcCCCCCc
Confidence 8889987653
No 68
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=95.63 E-value=0.1 Score=55.59 Aligned_cols=74 Identities=11% Similarity=0.056 Sum_probs=44.7
Q ss_pred CcEE-EEeecCCCccchhhHHHHHH--HHHHHHH-cCCcEEEE--eeCc-----------eeecc-----CCCHHHH-HH
Q psy3680 35 PQRI-FSGIQPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFC--IVDL-----------HSITI-----KQKHKDL-KE 91 (422)
Q Consensus 35 ~~~i-~tGi~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~il--IaD~-----------hAlt~-----~~~~~~i-~~ 91 (422)
.+++ .+|..+-..+||||..+.+. -+.++.+ .|.+|.+. |.|. -.++. ..++.++ ++
T Consensus 21 ~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~~ 100 (481)
T PRK14534 21 DVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISRF 100 (481)
T ss_pred ceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHHH
Confidence 4444 46888888999999887554 3344444 68776552 3333 11111 2355444 44
Q ss_pred HHHHHHHHHHHcCCCCC
Q psy3680 92 NIQLMAASLLACGIDPQ 108 (422)
Q Consensus 92 ~~~~i~a~~lA~Gldp~ 108 (422)
.+.....++.++|+.+.
T Consensus 101 ~~~~f~~d~~~Lni~~~ 117 (481)
T PRK14534 101 FTEAFFDDCKKLNIVYP 117 (481)
T ss_pred HHHHHHHHHHHcCCCCC
Confidence 56677888888998755
No 69
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=95.54 E-value=0.12 Score=53.59 Aligned_cols=71 Identities=21% Similarity=0.304 Sum_probs=44.9
Q ss_pred EEEEeecCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEeeCceee----c-----cCCCHHHHH-HHHHHHHHHHHHc
Q psy3680 37 RIFSGIQPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIVDLHSI----T-----IKQKHKDLK-ENIQLMAASLLAC 103 (422)
Q Consensus 37 ~i~tGi~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIaD~hAl----t-----~~~~~~~i~-~~~~~i~a~~lA~ 103 (422)
...||-.|-+.+||||..+.+. -+.++++ .|.++.++.+ .+-. + ...+++++. +.+.....++.++
T Consensus 12 ~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~n-itD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~~L 90 (384)
T PRK12418 12 MYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQN-VTDVDDPLLERAARDGVDWRDLAEREIALFREDMEAL 90 (384)
T ss_pred EEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEe-cCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3457888889999999888654 3444444 5766654433 3222 1 134666664 4556778888888
Q ss_pred CC-CCC
Q psy3680 104 GI-DPQ 108 (422)
Q Consensus 104 Gl-dp~ 108 (422)
|+ .|+
T Consensus 91 ni~~~~ 96 (384)
T PRK12418 91 RVLPPR 96 (384)
T ss_pred CCCCCC
Confidence 86 544
No 70
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=95.38 E-value=0.057 Score=60.50 Aligned_cols=95 Identities=16% Similarity=0.228 Sum_probs=62.6
Q ss_pred EEEEee--cCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q psy3680 37 RIFSGI--QPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQ 114 (422)
Q Consensus 37 ~i~tGi--~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~ 114 (422)
.|.|=| .|||.+||||...++.+|.-....|.++++-+=|.- ......+....|..++.-+|++++.. ++.
T Consensus 31 ~v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~eDTd------~~r~~~e~~~~I~~dl~wLG~~wd~~-~~~ 103 (771)
T PRK14703 31 RVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDTN------PETEDTEYVEAIKDDVRWLGFDWGEH-LYY 103 (771)
T ss_pred ceEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCCC------CCcCChHHHHHHHHHHHHcCCCCCCC-ceE
Confidence 354544 567999999999999999777666655555544432 11234455677888888899998743 588
Q ss_pred cCCCcc-hhHHH-HH------Hhhccchhhhh
Q psy3680 115 QSQVPE-HTQLA-WV------LTCLCTVNRLN 138 (422)
Q Consensus 115 qSdi~e-~~el~-w~------l~~~~~~~~l~ 138 (422)
||+..+ +.+.. .+ ..|.++-.++.
T Consensus 104 qS~~~~~y~~~a~~Li~~G~aY~c~cs~eei~ 135 (771)
T PRK14703 104 ASDYFERMYAYAEQLIKMGLAYVDSVSEEEIR 135 (771)
T ss_pred eecCHHHHHHHHHHHHHcCCcccCcCCHHHHH
Confidence 999644 33332 22 35888876654
No 71
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.12 E-value=0.11 Score=54.76 Aligned_cols=85 Identities=21% Similarity=0.119 Sum_probs=51.9
Q ss_pred chhhHHHhhhhhhccCccEEeecCc-hhHHHHHHHHHHHHhccccC-ccCCCCeecccCCCCcccccCCCCCcccccCCC
Q psy3680 157 LFLYPVLQAADILLYKATHIPAGLD-QIHNINLANHLTQLFNNKFD-KIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDL 234 (422)
Q Consensus 157 l~~YPvLqAaDil~~~a~~vpvG~D-Q~~hielaRdia~r~n~~~g-~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~ 234 (422)
.=+=..-|+.++|--.-||--||.| +-+|+|- |+|+.--. +| +.|. ..=++ +.+| .. + ++|||||.+
T Consensus 206 WHIECSaM~~~~LG~~~DIHgGG~DLiFPHHEN--EiAQsea~-~g~~~~a-~yWmH----~G~l-~i-~-geKMSKSLG 274 (464)
T COG0215 206 WHIECSAMSTKYLGETFDIHGGGSDLIFPHHEN--EIAQSEAA-TGVKPFA-KYWMH----NGFL-NI-D-GEKMSKSLG 274 (464)
T ss_pred hhHHHHHHHHHHhCCCcceecCcccccCCCccc--HHHHHHhh-hCCCcce-eEeEE----ccee-ee-c-CcCcccccC
Confidence 3445567899999889999999999 5688885 44443211 22 2221 11223 2233 22 3 589999999
Q ss_pred CCCCcEeccC-----CHHHHHHHhhh
Q psy3680 235 DSNSKIEITD-----PPEVIVRKCKK 255 (422)
Q Consensus 235 n~~s~I~L~D-----sp~~I~kKI~~ 255 (422)
| -|.+-| +|++++=.+.+
T Consensus 275 N---fiti~d~l~~~~p~~lR~~lls 297 (464)
T COG0215 275 N---FITVRDLLKKYDPEVLRLFLLS 297 (464)
T ss_pred C---eeEHHHHHhhcCHHHHHHHHHH
Confidence 8 887755 45555544444
No 72
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.18 E-value=0.057 Score=56.19 Aligned_cols=114 Identities=11% Similarity=0.067 Sum_probs=73.7
Q ss_pred CCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHHHHhhhhccCCCCccccCCCCCcchhhHHHHH----
Q psy3680 206 IPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSNLITLH---- 281 (422)
Q Consensus 206 ~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~A~tD~~~~~~~~p~~~p~~~~l~~~~---- 281 (422)
+..|+++...+. =||-+-++.+||+|+++ |.+.+.+.+..+..+++.+||.....++-|| +..+.+++
T Consensus 212 lt~PLL~~ldG~-KmgKs~~~a~~~~s~~~--Sp~~~yq~~~~i~D~~~~~~~~~~t~l~~~e-----I~~i~~~~~~~~ 283 (401)
T COG0162 212 LTTPLLTGLDGK-KMGKSEGGAVWLDSEKT--SPYDFYQYWMNIEDADVKRFLKLLTFLSLEE-----IEEIEKYVLKGP 283 (401)
T ss_pred EEeccccCCCCC-cccccCCCceEccCCCC--CcHhhhhcHhcCcHHHHHHHHHHhCcCChHH-----HHHHHHHhhcCC
Confidence 455566533444 45555555799999998 8999999999999999999998753321121 11111111
Q ss_pred --------------HhcCC-----CCHHHHHHHHh-----CCChhHHHH-----HHHHHHHhhcCcHHHHHHHHh
Q psy3680 282 --------------ALCTN-----QLPQDICTQVK-----HLNTGQYKL-----LLADVLVEKFKPIRDEIEYLM 327 (422)
Q Consensus 282 --------------~~~t~-----~~~eei~~~~~-----~~~~~dlK~-----~Lae~i~~~l~pir~~~~~l~ 327 (422)
..+-+ ..+++.++.|. .+++.++|+ .++..+...|.|.|...++..
T Consensus 284 ~~r~~k~~LA~e~~~~~hG~~~a~~a~~~~~~~F~~g~~~~l~~~dlk~~~~~~~~~~lv~~~L~psr~earr~i 358 (401)
T COG0162 284 EPREAKKLLAKEVTKLVHGEEAAEAAEEEFEKLFSEGLPENLPPADLKQKLEDGLVDLLVDAGLAPSRSEARRLI 358 (401)
T ss_pred ChHHHHHHHHHHhhHhhcCHHHHHHHHHHHHHHHhcCCcccCCHHHHhhhhHHHHHHHHHHhCCcccHHHHHhhc
Confidence 11111 23445555664 478899999 888888888999887765543
No 73
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=93.68 E-value=0.51 Score=54.20 Aligned_cols=71 Identities=25% Similarity=0.285 Sum_probs=45.6
Q ss_pred cCccEEeecCchhH-HHHHHHHHHHHhccc--cCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC---
Q psy3680 171 YKATHIPAGLDQIH-NINLANHLTQLFNNK--FDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD--- 244 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~-hielaRdia~r~n~~--~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D--- 244 (422)
|-+|+...|.||.. |+.... |++. ++. -+.|..++ .+..+.. + |+|||||.+| .|++.+
T Consensus 529 ~P~D~~~~GkDii~~Hl~~~~-----~~~~a~~~~-~~~Pk~v~---~hG~vl~--~-G~KMSKS~GN---vVdp~eii~ 593 (897)
T PRK12300 529 YPVDWRHSGKDLIPNHLTFFI-----FNHVAIFPE-EKWPRGIV---VNGFVLL--E-GKKMSKSKGN---VIPLRKAIE 593 (897)
T ss_pred CCceEEEeeeccCccHHHHHH-----HHHHHhcCC-CccCcEEE---EcceEEE--C-CccccCcCCC---CCCHHHHHH
Confidence 46899999999976 555542 2222 221 13455555 3555543 3 5899999987 888765
Q ss_pred --CHHHHHHHhhhh
Q psy3680 245 --PPEVIVRKCKKA 256 (422)
Q Consensus 245 --sp~~I~kKI~~A 256 (422)
+++.++=.+..+
T Consensus 594 ~yGaDalRl~L~~~ 607 (897)
T PRK12300 594 EYGADVVRLYLTSS 607 (897)
T ss_pred HcChHHHHHHHHhC
Confidence 567777666664
No 74
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.66 E-value=0.26 Score=53.48 Aligned_cols=75 Identities=19% Similarity=0.276 Sum_probs=51.9
Q ss_pred CCcEEEEee-cCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEee-Cceeec-------cCCCHHHH-HHHHHHHHHHH
Q psy3680 34 FPQRIFSGI-QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIV-DLHSIT-------IKQKHKDL-KENIQLMAASL 100 (422)
Q Consensus 34 ~~~~i~tGi-~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIa-D~hAlt-------~~~~~~~i-~~~~~~i~a~~ 100 (422)
++..|.|.+ -|.|.|||||....|. -+.++|+ .|++++++-| |-|..= -..+|+++ .++......+|
T Consensus 5 ~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~ 84 (558)
T COG0143 5 KKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELF 84 (558)
T ss_pred CcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 344455554 4789999999876555 5788888 6888766554 566532 13577766 56667789999
Q ss_pred HHcCCCCC
Q psy3680 101 LACGIDPQ 108 (422)
Q Consensus 101 lA~Gldp~ 108 (422)
.+++++-+
T Consensus 85 ~~l~IsfD 92 (558)
T COG0143 85 KALNISFD 92 (558)
T ss_pred HHhCCccc
Confidence 99988765
No 75
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=93.30 E-value=0.34 Score=50.34 Aligned_cols=79 Identities=20% Similarity=0.360 Sum_probs=45.9
Q ss_pred cCCCccchhhHHHHHH--HHHHHHH-cCCcEEE-EeeCceeec-------cCCCHHHH-HHHHHHHHHHHHHcCCCCCce
Q psy3680 43 QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIF-CIVDLHSIT-------IKQKHKDL-KENIQLMAASLLACGIDPQKS 110 (422)
Q Consensus 43 ~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~i-lIaD~hAlt-------~~~~~~~i-~~~~~~i~a~~lA~Gldp~k~ 110 (422)
-|.|.|||||..+.+. -+.++++ .|+++++ .-.|-|..- ...+|+++ .++...+.++|.++||+.+.
T Consensus 9 Y~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~~D~- 87 (391)
T PF09334_consen 9 YPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNISYDR- 87 (391)
T ss_dssp ETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---SE-
T ss_pred CCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCcc-
Confidence 5789999999876554 3444444 6877644 445777553 13477655 56678899999999999873
Q ss_pred EEEEcCCCcchhHH
Q psy3680 111 ILFQQSQVPEHTQL 124 (422)
Q Consensus 111 ~i~~qSdi~e~~el 124 (422)
|.+-++ ++|.+.
T Consensus 88 -F~rTt~-~~h~~~ 99 (391)
T PF09334_consen 88 -FIRTTD-DRHKEF 99 (391)
T ss_dssp -EEETTS-HHHHHH
T ss_pred -eeCCCC-HHHHHH
Confidence 444443 455443
No 76
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=93.26 E-value=0.27 Score=54.62 Aligned_cols=74 Identities=20% Similarity=0.343 Sum_probs=51.2
Q ss_pred CcEEEEee-cCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEeeCc-eee--c-----cCCCHHHH-HHHHHHHHHHHH
Q psy3680 35 PQRIFSGI-QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIVDL-HSI--T-----IKQKHKDL-KENIQLMAASLL 101 (422)
Q Consensus 35 ~~~i~tGi-~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIaD~-hAl--t-----~~~~~~~i-~~~~~~i~a~~l 101 (422)
+..|.|++ -|+|.+||||..+.+. -+.++++ .|.++.++-+.. |.. . ...+|.++ .++...+.++|.
T Consensus 3 ~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~ 82 (673)
T PRK00133 3 KILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFA 82 (673)
T ss_pred CEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45678888 7999999999887554 3445554 688877666643 332 1 12356555 556778899999
Q ss_pred HcCCCCC
Q psy3680 102 ACGIDPQ 108 (422)
Q Consensus 102 A~Gldp~ 108 (422)
++|++++
T Consensus 83 ~l~i~~d 89 (673)
T PRK00133 83 GFGISFD 89 (673)
T ss_pred HhCCCCC
Confidence 9999876
No 77
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=92.15 E-value=0.22 Score=57.28 Aligned_cols=60 Identities=25% Similarity=0.153 Sum_probs=38.6
Q ss_pred hccCccEEeecCchh---HHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEecc
Q psy3680 169 LLYKATHIPAGLDQI---HNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEIT 243 (422)
Q Consensus 169 l~~~a~~vpvG~DQ~---~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~ 243 (422)
..+-+|+...|.||. -|-.+-..++- ++. ..|..++ .+..+.+.+ |+|||||.+| .|...
T Consensus 542 ~~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~-~g~------~P~k~vl---~HG~vld~~--G~KMSKSlGN---vIdP~ 604 (912)
T PRK05743 542 LGYPADLYLEGSDQHRGWFQSSLLTSVAT-RGK------APYKQVL---THGFTVDGK--GRKMSKSLGN---VIDPQ 604 (912)
T ss_pred cCCCceEEEecccccchHHHHHHHHHHHh-cCC------CccceeE---EeeeEECCC--CCCCCCCCCC---cCCHH
Confidence 346799999999996 33444444433 332 3345555 466766543 5899999987 76654
No 78
>PLN02224 methionine-tRNA ligase
Probab=91.36 E-value=0.78 Score=50.54 Aligned_cols=77 Identities=14% Similarity=0.106 Sum_probs=52.2
Q ss_pred cCCCcEEEEee-cCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEe-eCceee--c-----cCCCHH-HHHHHHHHHHH
Q psy3680 32 ISFPQRIFSGI-QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCI-VDLHSI--T-----IKQKHK-DLKENIQLMAA 98 (422)
Q Consensus 32 ~~~~~~i~tGi-~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilI-aD~hAl--t-----~~~~~~-~i~~~~~~i~a 98 (422)
++++..|-|++ -|+|.|||||..+.+. -+.++++ .|.+++++- .|-|.. . ...+|. -.++++..+.+
T Consensus 67 ~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~ 146 (616)
T PLN02224 67 EADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRT 146 (616)
T ss_pred CCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34456777888 8899999999887654 3555555 587765544 455653 1 123444 44666778888
Q ss_pred HHHHcCCCCC
Q psy3680 99 SLLACGIDPQ 108 (422)
Q Consensus 99 ~~lA~Gldp~ 108 (422)
.|.++|++++
T Consensus 147 ~~~~l~I~~D 156 (616)
T PLN02224 147 LWKDLDIAYD 156 (616)
T ss_pred HHHHcCCCCC
Confidence 8999999887
No 79
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=91.23 E-value=0.31 Score=55.66 Aligned_cols=73 Identities=16% Similarity=0.085 Sum_probs=44.5
Q ss_pred cCccEEeecCchhH-HHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC-----
Q psy3680 171 YKATHIPAGLDQIH-NINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD----- 244 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~-hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D----- 244 (422)
+-+|+...|.||.. ++-.....+-.+. | ...|..++ .+.++...+ |+|||||.+| .|+..|
T Consensus 563 ~P~d~~i~G~Di~r~Wf~~~~~~~~~~~---~--~~P~k~v~---~hG~vl~~~--G~KMSKSkGN---vI~p~d~i~~y 629 (861)
T TIGR00392 563 FPADFILEGSDQTRGWFYSSLAIGTALF---G--QAPYKNVI---THGFTLDEK--GRKMSKSLGN---VVDPLKVINKY 629 (861)
T ss_pred CCceEEEEecchhccHHHHHHHHHHHHc---C--CCChHhhE---ecceEECCC--CCCcCCCCCC---CCCHHHHHHHc
Confidence 46899999999965 2222222222121 2 12334554 356665433 5899999987 888765
Q ss_pred CHHHHHHHhhhh
Q psy3680 245 PPEVIVRKCKKA 256 (422)
Q Consensus 245 sp~~I~kKI~~A 256 (422)
+++.++=.+.++
T Consensus 630 GaDalR~~ll~~ 641 (861)
T TIGR00392 630 GADILRLYVASS 641 (861)
T ss_pred CHHHHHHHHHhC
Confidence 567777666665
No 80
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=91.18 E-value=0.23 Score=50.50 Aligned_cols=59 Identities=27% Similarity=0.220 Sum_probs=34.6
Q ss_pred cCccEEeecCchhH---HHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC
Q psy3680 171 YKATHIPAGLDQIH---NINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD 244 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~---hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D 244 (422)
+.+|+.+.|.||.. |-.+-.-++ + +|. ..|..+. .+..+... + |+|||||.+| .|++.|
T Consensus 251 ~p~d~~~~GkDii~~wf~~~~~~~~~--~---~~~--~p~~~~~---~hg~~~~~-~-g~KmSKS~gn---~i~~~~ 312 (338)
T cd00818 251 FPADFILEGSDQTRGWFYSLLLLSTA--L---FGK--APYKNVI---VHGFVLDE-D-GRKMSKSLGN---YVDPQE 312 (338)
T ss_pred CCCeEEeecchHHhHHHHHHHHHHHH--h---cCC--CccceEE---EEeeEECC-C-CCCCCCCCCC---cCCHHH
Confidence 45789999999975 333322222 1 121 1224444 35555443 3 5899999997 888843
No 81
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=90.96 E-value=0.17 Score=52.40 Aligned_cols=61 Identities=23% Similarity=0.215 Sum_probs=36.5
Q ss_pred cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCC-eecccCCCCcccccCCCCCcccccCCCCCCCcEeccC
Q psy3680 171 YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIP-QLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD 244 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P-~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D 244 (422)
+.+|+..+|.||...+-.. .++.... ..| ..| ..++ .+..+.++. ++|||||.+| .|.+.|
T Consensus 295 ~p~d~~~~G~D~~~~h~~~-~l~~~~~-~~g---~~p~~~v~---~hg~v~~~~--g~KMSKS~Gn---~v~~~d 356 (382)
T cd00817 295 YPTSLLVTGHDIIFFWVAR-MIMRGLK-LTG---KLPFKEVY---LHGLVRDED--GRKMSKSLGN---VIDPLD 356 (382)
T ss_pred CCCCeeeeecCcCchHHHH-HHHHHHH-hhC---CCchHHeE---eeeeEECCC--CCCccccCCC---CCCHHH
Confidence 4589999999998644433 2322211 012 124 2333 466666554 5899999987 887743
No 82
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=90.43 E-value=0.6 Score=52.99 Aligned_cols=88 Identities=19% Similarity=0.192 Sum_probs=54.6
Q ss_pred CCcEEEEeecCC--CccchhhHHHHHH--HHHHHHH-cCCcEEEEee-Cceeec-------cCCCH-HHHHHHHHHHHHH
Q psy3680 34 FPQRIFSGIQPT--GTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIV-DLHSIT-------IKQKH-KDLKENIQLMAAS 99 (422)
Q Consensus 34 ~~~~i~tGi~PT--G~lHLGny~g~i~--~~~~lq~-~g~~~~ilIa-D~hAlt-------~~~~~-~~i~~~~~~i~a~ 99 (422)
++..++.|. |+ |.||+||..+-+. -+.++++ .|.++.+..| |-|.+- ...++ +-..+++..+..+
T Consensus 32 ~~~~i~~~p-Py~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~ 110 (805)
T PRK00390 32 KKYYVLDMF-PYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQ 110 (805)
T ss_pred CCEEEEccC-CCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 356677775 66 9999999887544 4666676 5776654443 444442 12233 4456778899999
Q ss_pred HHHcCCCCCceEEEEcCCCcchhH
Q psy3680 100 LLACGIDPQKSILFQQSQVPEHTQ 123 (422)
Q Consensus 100 ~lA~Gldp~k~~i~~qSdi~e~~e 123 (422)
+.+.|+..+-...|.-++ |++.+
T Consensus 111 ~~~lGi~~Dw~~~~~T~~-~~~~~ 133 (805)
T PRK00390 111 LKSLGFSYDWSREIATCD-PEYYK 133 (805)
T ss_pred HHHhCCcccCCCCeecCC-HHHHH
Confidence 999999655323344343 44433
No 83
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=89.72 E-value=0.46 Score=54.85 Aligned_cols=73 Identities=22% Similarity=0.180 Sum_probs=45.8
Q ss_pred cCccEEeecCchhH-HHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC-----
Q psy3680 171 YKATHIPAGLDQIH-NINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD----- 244 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~-hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D----- 244 (422)
|-+|+...|.||.. |+.+.. +... -.++. -+.|..++ .+..+.. + |+|||||.+| .|++.+
T Consensus 572 yP~D~~~~GkDii~~H~~~~i--~~~~-a~~~~-~~~Pk~i~---~~G~vl~--~-G~KMSKSlGN---vI~p~d~i~~y 638 (938)
T TIGR00395 572 YPLDWRISGKDLIPNHLTFYI--FHHV-AIFPE-KFWPRGIV---VNGYVML--E-GKKMSKSKGN---VLTLEQAVEKF 638 (938)
T ss_pred CCceEEEEeeccccchHHHHH--HHHH-HcCCc-cccCcEEE---EeceEEe--C-CccccCcCCC---CCCHHHHHHHc
Confidence 56899999999987 555442 1111 01121 11355554 2445543 3 5899999987 888865
Q ss_pred CHHHHHHHhhhh
Q psy3680 245 PPEVIVRKCKKA 256 (422)
Q Consensus 245 sp~~I~kKI~~A 256 (422)
+++.++=.+..+
T Consensus 639 GaDalRl~Ll~~ 650 (938)
T TIGR00395 639 GADVARLYIADA 650 (938)
T ss_pred ChHHHHHHHHhc
Confidence 577787777765
No 84
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=89.65 E-value=1.1 Score=48.39 Aligned_cols=73 Identities=23% Similarity=0.366 Sum_probs=47.1
Q ss_pred EEEEeecCC--CccchhhHHHH-HH--HHHHHHH-cCCcEEEEee-Cceeec-------cCCCHHHH-HHHHHHHHHHHH
Q psy3680 37 RIFSGIQPT--GTLHLGNYFGA-VQ--TWSALQN-KGEDVIFCIV-DLHSIT-------IKQKHKDL-KENIQLMAASLL 101 (422)
Q Consensus 37 ~i~tGi~PT--G~lHLGny~g~-i~--~~~~lq~-~g~~~~ilIa-D~hAlt-------~~~~~~~i-~~~~~~i~a~~l 101 (422)
.+.|+-=|+ |.|||||..+. +. -+.++++ .|.++++..+ |-|..- ...++.++ ++++..+.++|.
T Consensus 5 ~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 84 (556)
T PRK12268 5 ILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFK 84 (556)
T ss_pred EEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 344555555 89999998875 32 3444444 5877766544 444332 12355555 667888999999
Q ss_pred HcCCCCCc
Q psy3680 102 ACGIDPQK 109 (422)
Q Consensus 102 A~Gldp~k 109 (422)
++|++++.
T Consensus 85 ~l~i~~d~ 92 (556)
T PRK12268 85 KLGISYDL 92 (556)
T ss_pred HcCCcCCC
Confidence 99999873
No 85
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=89.46 E-value=1.1 Score=47.63 Aligned_cols=75 Identities=19% Similarity=0.285 Sum_probs=46.1
Q ss_pred eecCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEee-Cceee-c------cCCCHHHH-HHHHHHHHHHHHHcCCCCC
Q psy3680 41 GIQPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIV-DLHSI-T------IKQKHKDL-KENIQLMAASLLACGIDPQ 108 (422)
Q Consensus 41 Gi~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIa-D~hAl-t------~~~~~~~i-~~~~~~i~a~~lA~Gldp~ 108 (422)
+-.|+|.+||||..+.+. -+.+.++ .|.++.+..+ |-|.. + ...++.++ +.+...+.+++.++|++++
T Consensus 9 ~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~~D 88 (511)
T PRK11893 9 IYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNISYD 88 (511)
T ss_pred CCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 345779999999776443 3444554 6877655443 33422 1 12355444 5566788899999999877
Q ss_pred ceEEEEcCC
Q psy3680 109 KSILFQQSQ 117 (422)
Q Consensus 109 k~~i~~qSd 117 (422)
. +++.++
T Consensus 89 ~--~~~t~~ 95 (511)
T PRK11893 89 D--FIRTTD 95 (511)
T ss_pred C--ceeCCC
Confidence 3 344444
No 86
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=89.27 E-value=0.46 Score=52.07 Aligned_cols=61 Identities=28% Similarity=0.264 Sum_probs=33.0
Q ss_pred cCccEEeecCchhHHHH-HHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC
Q psy3680 171 YKATHIPAGLDQIHNIN-LANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD 244 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~hie-laRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D 244 (422)
|-+|+...|.||....- ...-+...+... ..| +. ++ .+.++...+ |+|||||.+| .|.+.+
T Consensus 513 ~P~D~~~~G~D~~~~W~~~~l~~~~~l~~~--~pf--k~-v~---~hG~vld~~--G~KMSKS~GN---vi~p~~ 574 (601)
T PF00133_consen 513 YPVDLYIEGKDQIRGWFQSSLFLSVALFGK--EPF--KK-VI---THGFVLDED--GRKMSKSKGN---VIDPED 574 (601)
T ss_dssp SSBSEEEEEGGGTTTHHHHHHHHHHHHSSS--TSB--SE-EE---EE--EEETT--SSB-BTTTTB-----BHHH
T ss_pred CCcccccCCccchhhHHHHhHhhccccccC--Cch--he-ee---ecccccccc--eeecccCCCc---ccCHHH
Confidence 56899999999986543 333222223211 112 22 32 366666653 5899999987 777643
No 87
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=89.13 E-value=0.74 Score=52.56 Aligned_cols=88 Identities=24% Similarity=0.217 Sum_probs=52.5
Q ss_pred cEEEEee-cCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEee-Cceeec-------cCCCH-HHHHHHHHHHHHHHHH
Q psy3680 36 QRIFSGI-QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIV-DLHSIT-------IKQKH-KDLKENIQLMAASLLA 102 (422)
Q Consensus 36 ~~i~tGi-~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIa-D~hAlt-------~~~~~-~~i~~~~~~i~a~~lA 102 (422)
..++.|+ -|||.||+||..+-+. -+.++++ .|+++.+..| |-|.+- ...++ +-..+++..+..++.+
T Consensus 31 ~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 110 (842)
T TIGR00396 31 YYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQA 110 (842)
T ss_pred EEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3555552 3459999999887544 4666666 5877655444 444441 12233 4456778899999999
Q ss_pred cCCCCCceEEEEcCCCcchhHH
Q psy3680 103 CGIDPQKSILFQQSQVPEHTQL 124 (422)
Q Consensus 103 ~Gldp~k~~i~~qSdi~e~~el 124 (422)
.|+..+=...|.-++ |++.+.
T Consensus 111 lG~~~Dw~~~~~T~d-~~y~~~ 131 (842)
T TIGR00396 111 LGFSYDWDREIATCD-PEYYKW 131 (842)
T ss_pred hCCcccCCCCcccCC-HHHHHH
Confidence 997654222343333 455443
No 88
>PLN02610 probable methionyl-tRNA synthetase
Probab=88.55 E-value=1.3 Score=50.31 Aligned_cols=75 Identities=16% Similarity=0.150 Sum_probs=50.3
Q ss_pred CCcEEEEee-cCCCccchhhHHHH-HH--HHHHHHH-cCCcEEEEee-Cceeec-------cCCCHHHH-HHHHHHHHHH
Q psy3680 34 FPQRIFSGI-QPTGTLHLGNYFGA-VQ--TWSALQN-KGEDVIFCIV-DLHSIT-------IKQKHKDL-KENIQLMAAS 99 (422)
Q Consensus 34 ~~~~i~tGi-~PTG~lHLGny~g~-i~--~~~~lq~-~g~~~~ilIa-D~hAlt-------~~~~~~~i-~~~~~~i~a~ 99 (422)
++..|.|.+ -|+|.|||||..|. +. -+.++++ .|++++++.| |-|..- ...+|+++ .++...+..+
T Consensus 17 ~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~ 96 (801)
T PLN02610 17 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEV 96 (801)
T ss_pred CCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 344555554 46789999999863 42 4667777 5877766655 556552 13466655 4556778888
Q ss_pred HHHcCCCCC
Q psy3680 100 LLACGIDPQ 108 (422)
Q Consensus 100 ~lA~Gldp~ 108 (422)
|.++|++.+
T Consensus 97 ~~~l~i~~D 105 (801)
T PLN02610 97 YDWFDISFD 105 (801)
T ss_pred HHHcCCccc
Confidence 999999887
No 89
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=88.30 E-value=1.1 Score=44.94 Aligned_cols=67 Identities=22% Similarity=0.350 Sum_probs=43.1
Q ss_pred cCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEe-eCceeec-------cCCCHHHH-HHHHHHHHHHHHHcCCCCCc
Q psy3680 43 QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCI-VDLHSIT-------IKQKHKDL-KENIQLMAASLLACGIDPQK 109 (422)
Q Consensus 43 ~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilI-aD~hAlt-------~~~~~~~i-~~~~~~i~a~~lA~Gldp~k 109 (422)
-|+|.+||||..+.+. -+.++++ .|+++.+.. .|-|..- ...+++++ +.+...+.+++.++|++++.
T Consensus 10 y~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D~ 88 (319)
T cd00814 10 YVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNISFDY 88 (319)
T ss_pred CCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCCC
Confidence 4569999999988654 3444444 577665443 3555331 12356555 45567888899999998774
No 90
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=87.98 E-value=0.28 Score=52.30 Aligned_cols=72 Identities=22% Similarity=0.187 Sum_probs=44.5
Q ss_pred cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC-----C
Q psy3680 171 YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD-----P 245 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D-----s 245 (422)
+.+|+...|.||...+-..- +|.-.. .| .+.|..++ .+..+. + + |+|||||.+| .|++.| +
T Consensus 253 ~~~D~~~~G~D~~~~h~~~~-~a~~~a--~~--~~~p~~~~---~~g~v~-~-~-G~KMSKS~GN---~i~~~dll~~~g 318 (511)
T PRK11893 253 WPADVHLIGKDILRFHAVYW-PAFLMA--AG--LPLPKRVF---AHGFLT-L-D-GEKMSKSLGN---VIDPFDLVDEYG 318 (511)
T ss_pred CCCcceEecccccccchhHH-HHHHHh--CC--CCCCCEEE---eeccEE-E-C-CeeecccCCc---EEcHHHHHHHcC
Confidence 35688999999998533221 222111 11 24565665 245553 3 3 5899999987 999866 5
Q ss_pred HHHHHHHhhhh
Q psy3680 246 PEVIVRKCKKA 256 (422)
Q Consensus 246 p~~I~kKI~~A 256 (422)
++.++=.+.+.
T Consensus 319 ~DalR~~ll~~ 329 (511)
T PRK11893 319 VDAVRYFLLRE 329 (511)
T ss_pred cHHHHHHHHhc
Confidence 66766666553
No 91
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=87.66 E-value=2.3 Score=47.13 Aligned_cols=66 Identities=18% Similarity=0.261 Sum_probs=42.1
Q ss_pred cCCCccchhhHHHHHH--HHHHHHH-cCCcEEEE-eeCceeec-------cCCCHHHH-HHHHHHHHHHHHHcCCCCC
Q psy3680 43 QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFC-IVDLHSIT-------IKQKHKDL-KENIQLMAASLLACGIDPQ 108 (422)
Q Consensus 43 ~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~il-IaD~hAlt-------~~~~~~~i-~~~~~~i~a~~lA~Gldp~ 108 (422)
-|+|.+||||..+.+. -+.++++ .|.+++++ -.|-|..- ...+|.++ ..+...+..+|.++|++++
T Consensus 14 y~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~lgI~~D 91 (648)
T PRK12267 14 YPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKLDISYD 91 (648)
T ss_pred CCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4569999999877554 3555555 57766543 34555432 12355544 4556778888888898765
No 92
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=87.52 E-value=0.4 Score=55.92 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=47.3
Q ss_pred cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCC-eecccCCCCcccccCCCCCcccccCCCCCCCcEeccC-----
Q psy3680 171 YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIP-QLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD----- 244 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P-~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D----- 244 (422)
+-+|+...|.||.. +=.+|-++..+... | ..| ..++ .+.+|..-+ |+|||||.+| .|+..|
T Consensus 490 ~P~d~~~~G~Dii~-~W~a~~l~~~~~~~-~---~~Pfk~V~---~hG~v~d~~--G~KMSKSkGN---vIdP~dvIe~y 556 (1052)
T PRK14900 490 YPTSVMETGHDIIF-FWVARMMMMGLHFM-G---EVPFRTVY---LHPMVRDEK--GQKMSKTKGN---VIDPLVITEQY 556 (1052)
T ss_pred CCchhhcccccHHh-HHHHHHHHHHHHhc-C---CCccceeE---ecccEECCC--CCCccCCCCC---CCCHHHHHHHh
Confidence 56789999999984 45556665544321 2 235 4444 366665533 5899999987 888765
Q ss_pred CHHHHHHHhhh
Q psy3680 245 PPEVIVRKCKK 255 (422)
Q Consensus 245 sp~~I~kKI~~ 255 (422)
.++.++=.+..
T Consensus 557 GaDalR~~L~~ 567 (1052)
T PRK14900 557 GADALRFTLAA 567 (1052)
T ss_pred CcHHHHHHHHh
Confidence 56666666665
No 93
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.07 E-value=2.7 Score=47.64 Aligned_cols=74 Identities=22% Similarity=0.189 Sum_probs=48.2
Q ss_pred cCccEEeecCchhHHHHHHHHHHHHhcccc--C-ccCCCCee---cccCCCCcccccCCCCCcccccCCCCCCCcEeccC
Q psy3680 171 YKATHIPAGLDQIHNINLANHLTQLFNNKF--D-KIFPIPQL---LPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD 244 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~hielaRdia~r~n~~~--g-~~f~~P~~---li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D 244 (422)
|=+|+-.+|.|+..++-+-- ||+|+. . ...+..+| ++ ...+|.+- + ++|||||.+| .|.+.+
T Consensus 525 ~PVD~yigG~ehavlHLly~----rF~Hkal~d~g~~p~~epf~~L~---~qGmVl~~-~-g~KMSKSKgN---~v~p~~ 592 (814)
T COG0495 525 YPVDLYIGGIEHAVLHLLYF----RFFHKALFDEGLVPKDEPFKKLI---TQGMVLGE-E-GEKMSKSKGN---VVDPEE 592 (814)
T ss_pred cChheeecchhHHHHHHHHH----HHHHHHhcccCcCCCccchhhhh---ccceEEec-C-CCccccccCC---CCCHHH
Confidence 45899999999988666432 356542 1 22222222 44 35566553 2 4799999887 888876
Q ss_pred -----CHHHHHHHhhhh
Q psy3680 245 -----PPEVIVRKCKKA 256 (422)
Q Consensus 245 -----sp~~I~kKI~~A 256 (422)
.++.++=.++.+
T Consensus 593 ~i~~yGADt~Rl~~m~~ 609 (814)
T COG0495 593 AVEKYGADTVRLYIMFA 609 (814)
T ss_pred HHHHhCchHHHHHHHhh
Confidence 577888888875
No 94
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=86.93 E-value=1.7 Score=48.06 Aligned_cols=71 Identities=15% Similarity=0.121 Sum_probs=44.1
Q ss_pred CccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC-----CH
Q psy3680 172 KATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD-----PP 246 (422)
Q Consensus 172 ~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D-----sp 246 (422)
.+++.+.|.||..++-.-= ..+-...| ++.|..++ .+..+.. + ++|||||.+| .|+..| ++
T Consensus 254 p~~~~~~GkDii~fH~i~w---pa~l~~~~--~~~p~~v~---~hg~l~~--e-g~KMSKS~GN---~i~p~d~l~~yga 319 (648)
T PRK12267 254 PADVHLVGKDILRFHAIYW---PIMLMALG--LPLPKKVF---AHGWWLM--K-DGKMSKSKGN---VVDPEELVDRYGL 319 (648)
T ss_pred ccceEEEeeeecchhHHHH---HHHHHhCC--CCCCcEEE---ecceEEE--C-CceecccCCc---ccCHHHHHHHcCC
Confidence 4688999999988544321 01100012 45677766 2444432 3 4899999987 888765 57
Q ss_pred HHHHHHhhhh
Q psy3680 247 EVIVRKCKKA 256 (422)
Q Consensus 247 ~~I~kKI~~A 256 (422)
+.++=.+.+.
T Consensus 320 D~lR~~L~~~ 329 (648)
T PRK12267 320 DALRYYLLRE 329 (648)
T ss_pred cHHHHHHHhc
Confidence 7777767653
No 95
>PLN02660 pantoate--beta-alanine ligase
Probab=85.85 E-value=2.3 Score=42.40 Aligned_cols=66 Identities=8% Similarity=0.085 Sum_probs=45.1
Q ss_pred cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHH
Q psy3680 171 YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIV 250 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~ 250 (422)
.++|....|.--+|-+.+-|.+++-+| .|.-++ ..|++-.- | |=-||+- ..+|++...+..
T Consensus 145 v~P~~a~FGeKD~QQl~vIrrmV~dL~--------~~v~I~---~~ptvRe~-d-GLA~SSR------N~yLs~~eR~~A 205 (284)
T PLN02660 145 VEPDVAVFGKKDYQQWRVIRRMVRDLD--------FDIEVV---GSPIVREA-D-GLAMSSR------NVRLSAEEREKA 205 (284)
T ss_pred cCCCEeeecchHHHHHHHHHHHHHHcC--------CCceEE---eeCceECC-C-CCeeccc------cccCCHHHHHHH
Confidence 489999999999999999999999988 354555 35666554 3 3578866 345655444444
Q ss_pred HHhhh
Q psy3680 251 RKCKK 255 (422)
Q Consensus 251 kKI~~ 255 (422)
..|.+
T Consensus 206 ~~l~~ 210 (284)
T PLN02660 206 LSISR 210 (284)
T ss_pred HHHHH
Confidence 44444
No 96
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=85.83 E-value=2.5 Score=48.05 Aligned_cols=71 Identities=20% Similarity=0.211 Sum_probs=43.6
Q ss_pred cCccEEeecCch-hHHHHHHHHHHHHhccccCc-cCCCC-eecccCCCCcccccCCCCCcccccCCCCCCCcEeccC---
Q psy3680 171 YKATHIPAGLDQ-IHNINLANHLTQLFNNKFDK-IFPIP-QLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD--- 244 (422)
Q Consensus 171 ~~a~~vpvG~DQ-~~hielaRdia~r~n~~~g~-~f~~P-~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D--- 244 (422)
|-+|+-+.|.|| .-|+-.+|-....+- ..|- ....| ..++ .+.+| |||||.+| .|...|
T Consensus 522 ~P~Dly~~G~D~~i~hL~y~Rf~~~~l~-~~~~~~~~~Pfk~v~---~~G~v--------KMSKS~GN---~i~p~~~i~ 586 (805)
T PRK00390 522 LPVDQYIGGIEHAVLHLLYARFFTKVLR-DLGLVSSDEPFKKLL---TQGMV--------KMSKSKGN---VVDPDDIIE 586 (805)
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHHHH-HhhcccCCcchhhhe---ecCcE--------EeCCCCCC---CCCHHHHHH
Confidence 569999999999 688888885443221 1110 01233 1222 13232 99999987 777765
Q ss_pred --CHHHHHHHhhhh
Q psy3680 245 --PPEVIVRKCKKA 256 (422)
Q Consensus 245 --sp~~I~kKI~~A 256 (422)
+++.++=.+..+
T Consensus 587 ~ygaD~lRl~l~~~ 600 (805)
T PRK00390 587 KYGADTARLFEMFA 600 (805)
T ss_pred HcChHHHHHHHHhc
Confidence 577777767653
No 97
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=85.53 E-value=0.96 Score=51.85 Aligned_cols=72 Identities=21% Similarity=0.227 Sum_probs=45.1
Q ss_pred cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCC-eecccCCCCcccccCCCCCcccccCCCCCCCcEeccC-----
Q psy3680 171 YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIP-QLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD----- 244 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P-~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D----- 244 (422)
|-+|+...|.||..+ =.+|-++..... .| ..| ..++ .+..|.+.+ |+|||||.+| .|...|
T Consensus 472 ~P~d~~~~G~Dii~~-W~a~~~~~~~~~-~~---~~Pfk~v~---~hG~v~d~~--G~KMSKSlGN---vIdP~dvi~~y 538 (874)
T PRK05729 472 YPTSVLVTGFDIIFF-WVARMIMMGLHF-TG---QVPFKDVY---IHGLVRDEQ--GRKMSKSKGN---VIDPLDLIDKY 538 (874)
T ss_pred CCcccccccccccch-HHHHHHHHHHHh-cC---CCchhheE---EeeeEECCC--CCCcccCCCC---CCCHHHHHHHh
Confidence 568999999999875 344444433211 11 245 3444 477776654 5899999997 887755
Q ss_pred CHHHHHHHhhh
Q psy3680 245 PPEVIVRKCKK 255 (422)
Q Consensus 245 sp~~I~kKI~~ 255 (422)
.++.++=-+.+
T Consensus 539 GaDalR~~ll~ 549 (874)
T PRK05729 539 GADALRFTLAA 549 (874)
T ss_pred ChHHHHHHHHh
Confidence 45556555554
No 98
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=85.46 E-value=0.54 Score=54.39 Aligned_cols=72 Identities=21% Similarity=0.144 Sum_probs=40.8
Q ss_pred hccCccEEeecCchhH---HHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC-
Q psy3680 169 LLYKATHIPAGLDQIH---NINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD- 244 (422)
Q Consensus 169 l~~~a~~vpvG~DQ~~---hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D- 244 (422)
+.+-+|+...|.||.. |-.+..-++ ++.. ..+..++ .+..+...+ |+|||||.+| .|...+
T Consensus 580 ~~~PaD~~~eG~Di~rgWF~s~ll~s~~--~~~~-----~P~k~V~---~HG~vld~~--G~KMSKSlGN---vIdP~~i 644 (961)
T PRK13804 580 LKWPADLYLEGSDQHRGWFNSSLLESCG--TRGR-----APYKAVL---THGFTLDEK--GEKMSKSLGN---TVSPQDV 644 (961)
T ss_pred cCCCceEEEEEcccccHHHHHHHHHHHH--hcCC-----CChhhEE---EeccEECCC--CCCccCCCCC---cCCHHHH
Confidence 3466899999999974 222111111 2211 1224444 366666543 5899999997 776544
Q ss_pred ----CHHHHHHHhhh
Q psy3680 245 ----PPEVIVRKCKK 255 (422)
Q Consensus 245 ----sp~~I~kKI~~ 255 (422)
.++.++=-+.+
T Consensus 645 i~~yGaD~lRl~lls 659 (961)
T PRK13804 645 IKQSGADILRLWVAS 659 (961)
T ss_pred HHhcCHHHHHHHHHh
Confidence 44555544443
No 99
>PLN02843 isoleucyl-tRNA synthetase
Probab=85.04 E-value=0.69 Score=53.61 Aligned_cols=59 Identities=27% Similarity=0.156 Sum_probs=35.1
Q ss_pred hccCccEEeecCchhH---HHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEec
Q psy3680 169 LLYKATHIPAGLDQIH---NINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEI 242 (422)
Q Consensus 169 l~~~a~~vpvG~DQ~~---hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L 242 (422)
+.+-+|+...|.||.. |-++..-++ + .|. ..+..++ .+..+..-+ |+|||||.+| .|..
T Consensus 561 ~~~PaDl~~eG~Di~rgWf~s~l~~~~~--~---~g~--~Pfk~v~---~HG~vld~~--G~KMSKSlGN---vI~p 622 (974)
T PLN02843 561 LSYPADLYLEGSDQHRGWFQSSLLTSVA--T---KGK--APYKSVL---THGFVLDEK--GFKMSKSLGN---VVDP 622 (974)
T ss_pred cCCCceeeeeeccccchHHHHHHHHHHH--h---cCC--CccceEE---EeccEECCC--CCCcCCCCCC---cCCH
Confidence 4467999999999987 222222221 1 121 1224444 466665543 5899999997 6654
No 100
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=84.67 E-value=2 Score=46.24 Aligned_cols=67 Identities=18% Similarity=0.255 Sum_probs=42.4
Q ss_pred ecCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEee-Cceeec-------cCCCHHHH-HHHHHHHHHHHHHcCCCCC
Q psy3680 42 IQPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIV-DLHSIT-------IKQKHKDL-KENIQLMAASLLACGIDPQ 108 (422)
Q Consensus 42 i~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIa-D~hAlt-------~~~~~~~i-~~~~~~i~a~~lA~Gldp~ 108 (422)
--|+|.+||||..+.+. -+.+.++ .|.++.+..+ |-|..- ...++.++ ..+...+.+++.+.|++++
T Consensus 8 P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D 86 (530)
T TIGR00398 8 PYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNISFD 86 (530)
T ss_pred CCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 35889999999887554 3444454 5777655444 333221 12355555 4456788888999998766
No 101
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=84.46 E-value=0.93 Score=51.40 Aligned_cols=71 Identities=18% Similarity=0.207 Sum_probs=41.4
Q ss_pred cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCC-eecccCCCCcccccCCCCCcccccCCCCCCCcEeccC-----
Q psy3680 171 YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIP-QLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD----- 244 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P-~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D----- 244 (422)
+-+|+...|.||....-. +-++...- .+| ..| ..++ .+..+...+ |+|||||.+| .|...|
T Consensus 485 ~P~d~~~~G~Di~~~w~~-~~l~~~~~-~~~---~~Pf~~v~---~hg~v~~~~--G~KMSKS~GN---~i~p~~~i~~y 551 (800)
T PRK13208 485 FPMDLRPQGHDIIRTWLF-YTILRAYL-LTG---KLPWKNIM---ISGMVLDPD--GKKMSKSKGN---VVTPEELLEKY 551 (800)
T ss_pred CCceEEEeecchhhhHHH-HHHHHHHH-hcC---CCCcceEE---EeeEEECCC--CCCCCCCCCC---CCCHHHHHHHc
Confidence 347899999999863322 22222211 022 123 3343 366665543 5899999997 887754
Q ss_pred CHHHHHHHhh
Q psy3680 245 PPEVIVRKCK 254 (422)
Q Consensus 245 sp~~I~kKI~ 254 (422)
+++.++=.+.
T Consensus 552 g~D~lR~~l~ 561 (800)
T PRK13208 552 GADAVRYWAA 561 (800)
T ss_pred CccHHHHHHh
Confidence 4566665555
No 102
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=84.32 E-value=1.3 Score=50.67 Aligned_cols=76 Identities=18% Similarity=0.135 Sum_probs=46.7
Q ss_pred cCccEEeecCch-hHHHHHHHHHHHHhccccCc-cCCCCe-ecccCCCCccccc----CCCCCc----------------
Q psy3680 171 YKATHIPAGLDQ-IHNINLANHLTQLFNNKFDK-IFPIPQ-LLPQDESAGKVKS----LKDPSK---------------- 227 (422)
Q Consensus 171 ~~a~~vpvG~DQ-~~hielaRdia~r~n~~~g~-~f~~P~-~li~~~~~~~lp~----L~~~~~---------------- 227 (422)
+-+|+.++|.|| .-|+-.+|-....+- ..|- ....|- .++ .+.+|.+ -+ |+
T Consensus 519 ~PvD~yi~G~dhailHLlyaRf~~~~l~-~~~~~~~~~Pfk~l~---~~G~Vl~~~~~~~--G~~~~~~~~~~~~~~~~~ 592 (842)
T TIGR00396 519 LPVDLYIGGAEHAILHLLYARFWHKFLY-DIGYVSTKEPFKKLI---NQGMVLGFYYPPN--GKSPPDELTERDEKAKDK 592 (842)
T ss_pred CCCcEeeccHHHHHHHHHHHHHHHHHHH-hccccCCCccHHHHh---ccceEEeeeecCC--CCccChhhhccccccccc
Confidence 569999999999 677777777543221 1110 012332 233 3555554 22 24
Q ss_pred -----------ccccCCCCCCCcEeccC-----CHHHHHHHhhh
Q psy3680 228 -----------KMSKSDLDSNSKIEITD-----PPEVIVRKCKK 255 (422)
Q Consensus 228 -----------KMSKS~~n~~s~I~L~D-----sp~~I~kKI~~ 255 (422)
|||||.+| .|.+.| +++.++=.++.
T Consensus 593 ~~~~~~~~~~~KMSKS~GN---~v~p~~ii~~ygaDalRl~~l~ 633 (842)
T TIGR00396 593 SGGELVVVGYEKMSKSKGN---GIDPQEIVKKHGADALRLYIMF 633 (842)
T ss_pred cCCcccccchhhhhhcCCC---cCCHHHHHHHcCchHHHHHHHh
Confidence 99999987 888765 56777766664
No 103
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=83.90 E-value=0.9 Score=47.62 Aligned_cols=69 Identities=17% Similarity=0.222 Sum_probs=44.7
Q ss_pred EEEEeecCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEeeCceee----c-----cCCCHHHH-HHHHHHHHHHHHHc
Q psy3680 37 RIFSGIQPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIVDLHSI----T-----IKQKHKDL-KENIQLMAASLLAC 103 (422)
Q Consensus 37 ~i~tGi~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIaD~hAl----t-----~~~~~~~i-~~~~~~i~a~~lA~ 103 (422)
...||-.|-+.+||||..+.+. -+.++++ .|.+|.++.+ .+.. + ...+++++ ++.+.....++.++
T Consensus 39 ~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~n-itD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~~L 117 (411)
T TIGR03447 39 MYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQN-VTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEAL 117 (411)
T ss_pred EEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeC-CCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 4568999999999999887654 3555555 5777655443 3322 1 13466655 44556778888888
Q ss_pred CCC
Q psy3680 104 GID 106 (422)
Q Consensus 104 Gld 106 (422)
|+.
T Consensus 118 ni~ 120 (411)
T TIGR03447 118 RVL 120 (411)
T ss_pred CCC
Confidence 864
No 104
>PLN02959 aminoacyl-tRNA ligase
Probab=83.74 E-value=1.1 Score=52.72 Aligned_cols=71 Identities=21% Similarity=0.243 Sum_probs=41.0
Q ss_pred cCccEEeecCchhHHHHHHHHHHHHhccc--cCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC----
Q psy3680 171 YKATHIPAGLDQIHNINLANHLTQLFNNK--FDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD---- 244 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~hielaRdia~r~n~~--~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D---- 244 (422)
|=+|+-..|.||..+.-. .-+ +++. +|+ -+-|..+. .+..|. + + |+|||||.+| .|.+.|
T Consensus 670 yP~Dl~~sG~Dii~~wl~-~~l---~~~~al~~~-~P~p~~v~---v~G~V~-~-~-G~KMSKSkGN---vI~p~diI~k 735 (1084)
T PLN02959 670 YPFDLRVSGKDLIQNHLT-FAI---YNHTAIWAE-EHWPRGFR---CNGHLM-L-N-SEKMSKSTGN---FLTLRQAIEE 735 (1084)
T ss_pred CCCeEEEecccHHHHHHH-HHH---HHHHHhcCC-CCCCceEE---EccEEe-c-C-CcCccccCCC---cCCHHHHHHH
Confidence 568999999999776542 222 2221 221 12343343 244444 3 3 5899999987 887755
Q ss_pred -CHHHHHHHhhh
Q psy3680 245 -PPEVIVRKCKK 255 (422)
Q Consensus 245 -sp~~I~kKI~~ 255 (422)
.++.++=-+..
T Consensus 736 yGADalRl~la~ 747 (1084)
T PLN02959 736 FSADATRFALAD 747 (1084)
T ss_pred hCchHHHHHHhh
Confidence 34555544444
No 105
>PLN02563 aminoacyl-tRNA ligase
Probab=83.71 E-value=0.99 Score=52.21 Aligned_cols=27 Identities=7% Similarity=0.164 Sum_probs=21.6
Q ss_pred ccCccEEeecCch-hHHHHHHHHHHHHh
Q psy3680 170 LYKATHIPAGLDQ-IHNINLANHLTQLF 196 (422)
Q Consensus 170 ~~~a~~vpvG~DQ-~~hielaRdia~r~ 196 (422)
.+-+|+..+|.|| .-|+-.+|-....+
T Consensus 614 w~PvD~yigG~dhailHLlY~Rfw~~~l 641 (963)
T PLN02563 614 WMPVDLYVGGAEHAVLHLLYARFWHKVL 641 (963)
T ss_pred cCCCcEeeccHHHHhhHhHHHHHHHHHH
Confidence 3569999999999 67888888776553
No 106
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=83.56 E-value=0.68 Score=51.34 Aligned_cols=83 Identities=25% Similarity=0.183 Sum_probs=51.4
Q ss_pred hhHHHhhhhhhccCccEEeecCch-hHHHHHHHHHHHHhccccCc-cCCCCeecccCCCCcccccCCCCCcccccCCCCC
Q psy3680 159 LYPVLQAADILLYKATHIPAGLDQ-IHNINLANHLTQLFNNKFDK-IFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDS 236 (422)
Q Consensus 159 ~YPvLqAaDil~~~a~~vpvG~DQ-~~hielaRdia~r~n~~~g~-~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~ 236 (422)
+=...||.|||-...|+--||.|- -+|+|- ++|+.-- .+|. .+. -.-++ +..| .+. |+|||||.+|
T Consensus 255 iECsam~~~~lg~~~DIh~gG~DL~FPHHeN--EiAQseA-~~~~~~~v-~y~~H----~G~L-~i~--G~KMSKSLGN- 322 (651)
T PTZ00399 255 IECSAMASNILGDPIDIHSGGIDLKFPHHDN--ELAQSEA-YFDKHQWV-NYFLH----SGHL-HIK--GLKMSKSLKN- 322 (651)
T ss_pred HHHHHHHHHHcCCcceeeccCCCCCCCcchh--HHHHHHH-hhCCCCCC-cEEEE----EEEE-Eec--cchhhhcCCC-
Confidence 335688999999999999999998 367553 3333211 0121 111 11222 1222 333 4799999987
Q ss_pred CCcEeccC-----CHHHHHHHhhh
Q psy3680 237 NSKIEITD-----PPEVIVRKCKK 255 (422)
Q Consensus 237 ~s~I~L~D-----sp~~I~kKI~~ 255 (422)
.|.+.| +++.++=.+..
T Consensus 323 --fItp~dlLekygaDaLR~~lLs 344 (651)
T PTZ00399 323 --FITIRQALSKYTARQIRLLFLL 344 (651)
T ss_pred --cccHHHHHHHcChHHHHHHHHh
Confidence 888865 67777766654
No 107
>KOG1149|consensus
Probab=83.41 E-value=2 Score=44.98 Aligned_cols=98 Identities=26% Similarity=0.334 Sum_probs=65.7
Q ss_pred CcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceE---
Q psy3680 35 PQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSI--- 111 (422)
Q Consensus 35 ~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~--- 111 (422)
.+||=..=-|||.+|||-+-.|+.|++...+.|.+.+.-|-|-. . ...|......+..++.-+|++++..-
T Consensus 33 ~VRvRFAPSPTGfLHlGgLRTALfNYLfArk~gGkFiLRiEDTD-q-----~R~v~gs~e~i~~~L~w~nl~~DEgP~~g 106 (524)
T KOG1149|consen 33 CVRVRFAPSPTGFLHLGGLRTALFNYLFARKKGGKFILRIEDTD-Q-----KRLIRGSEEAIYEDLKWANLDWDEGPGVG 106 (524)
T ss_pred eeEEeecCCCCcceehhhHHHHHHHHHHHHhcCCeEEEEecccc-c-----cccccchHHHHHHHHHhcCCCcccCCCcC
Confidence 36776677788999999999999999887777777777776644 1 12233344456667778999998653
Q ss_pred ----EEEcCCCcchhHH-HH-HH------hhccchhhhh
Q psy3680 112 ----LFQQSQVPEHTQL-AW-VL------TCLCTVNRLN 138 (422)
Q Consensus 112 ----i~~qSdi~e~~el-~w-~l------~~~~~~~~l~ 138 (422)
=|.||+-.++..- .- +| -|+++-.++.
T Consensus 107 G~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~ 145 (524)
T KOG1149|consen 107 GPFGPYEQSERLEIYKKYAEKLLESGHAYRCFCSEERLD 145 (524)
T ss_pred CCCCchhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHH
Confidence 2889975443222 11 22 2777766654
No 108
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=82.89 E-value=1.6 Score=43.79 Aligned_cols=59 Identities=24% Similarity=0.264 Sum_probs=35.0
Q ss_pred CccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC
Q psy3680 172 KATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD 244 (422)
Q Consensus 172 ~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D 244 (422)
..++..+|.|+..++...- .|--.. .| .+.|..++ .+..+. + + |+|||||.+| .|++.|
T Consensus 235 ~~~v~~~G~D~~~fh~~~~-pa~l~~--~~--~~~~~~~~---~~~~~~-~-~-g~kmSkS~gn---~i~~~~ 293 (319)
T cd00814 235 PELVHFIGKDIIRFHAIYW-PAMLLG--AG--LPLPTRIV---AHGYLT-V-E-GKKMSKSRGN---VVDPDD 293 (319)
T ss_pred CceEEEEeechhhhhHHHH-HHHHHh--CC--CCCCcEee---eeeeEE-E-C-CeeecccCCc---ccCHHH
Confidence 4679999999998754311 111111 12 34555555 244442 2 3 5899999987 888854
No 109
>PLN02563 aminoacyl-tRNA ligase
Probab=82.30 E-value=3.6 Score=47.74 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=47.6
Q ss_pred CcEEEEee-cCCCc-cchhhHHHHHH--HHHHHHH-cCCcEEEEee-Cceeec--c-----CCCH-HHHHHHHHHHHHHH
Q psy3680 35 PQRIFSGI-QPTGT-LHLGNYFGAVQ--TWSALQN-KGEDVIFCIV-DLHSIT--I-----KQKH-KDLKENIQLMAASL 100 (422)
Q Consensus 35 ~~~i~tGi-~PTG~-lHLGny~g~i~--~~~~lq~-~g~~~~ilIa-D~hAlt--~-----~~~~-~~i~~~~~~i~a~~ 100 (422)
+..|++|+ -|+|. ||+||..+-+. -+.++++ .|+++.+..| |-|.+- . ...| +...+++..+.+++
T Consensus 111 k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~ 190 (963)
T PLN02563 111 KFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQL 190 (963)
T ss_pred CEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHH
Confidence 35666675 45686 99999876543 4666666 5877655444 445552 1 1233 34567788899999
Q ss_pred HHcCCCCC
Q psy3680 101 LACGIDPQ 108 (422)
Q Consensus 101 lA~Gldp~ 108 (422)
...|+..+
T Consensus 191 ~~lG~s~D 198 (963)
T PLN02563 191 KSLGFSYD 198 (963)
T ss_pred HHhCcEee
Confidence 99996443
No 110
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=82.05 E-value=1.2 Score=51.80 Aligned_cols=75 Identities=21% Similarity=0.179 Sum_probs=42.9
Q ss_pred ccCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC-----
Q psy3680 170 LYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD----- 244 (422)
Q Consensus 170 ~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D----- 244 (422)
.+-+|+...|.||....- .+=++... ..+|. ..+..++ .+..+...+ |+|||||.+| .|...|
T Consensus 543 ~~Pad~~~~G~Di~r~Wf-~~l~~~~~-~~~~~--~pfk~v~---~hG~Vld~~--G~KMSKSlGN---vIdP~dli~~y 610 (975)
T PRK06039 543 HFPADFIVEGIDQTRGWF-YTLLALST-ALFDR--PPYKNVL---VHGHVLDED--GQKMSKSLGN---YVDPFEVFDKY 610 (975)
T ss_pred cCCceEEEechhhHhhHH-HHHHHHHH-HhcCC--CcccEEE---EeeeEECCC--CCCcCCCCCC---cCCHHHHHHHh
Confidence 356899999999976322 11111110 01121 1223444 366665443 5899999987 887755
Q ss_pred CHHHHHHHhhhh
Q psy3680 245 PPEVIVRKCKKA 256 (422)
Q Consensus 245 sp~~I~kKI~~A 256 (422)
.++.++=.+.+.
T Consensus 611 GaDalR~~lls~ 622 (975)
T PRK06039 611 GADALRWYLLSS 622 (975)
T ss_pred ChHHHHHHHHhC
Confidence 466666666653
No 111
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=81.54 E-value=1.5 Score=47.76 Aligned_cols=67 Identities=12% Similarity=0.005 Sum_probs=44.3
Q ss_pred cEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHHHHh
Q psy3680 174 THIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKC 253 (422)
Q Consensus 174 ~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI 253 (422)
-+-.+|.||.+|+.....++..++. +.|.-+.- ....++. +.|||||.+| .|.+.|=.++..++.
T Consensus 330 iI~V~g~~q~~h~~~v~~~l~~lG~------~~~~~l~h-~~~~~V~-----~~kmSkr~Gn---~V~~~dll~~~~~ra 394 (566)
T TIGR00456 330 MIYVWGSDHHLHIAQFFAILEKLGF------YKKKELIH-LNFGMVP-----LGSMKTRRGN---VISLDNLLDEASKRA 394 (566)
T ss_pred EEEEecCcHHHHHHHHHHHHHHcCC------CCCCceEE-EEEEEEE-----CCCCCccCCc---eeeHHHHHHHHHHHH
Confidence 4567899999999999999999973 23422210 1233332 2599999887 999986555544433
Q ss_pred hh
Q psy3680 254 KK 255 (422)
Q Consensus 254 ~~ 255 (422)
.+
T Consensus 395 ~~ 396 (566)
T TIGR00456 395 GN 396 (566)
T ss_pred HH
Confidence 33
No 112
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=81.43 E-value=2.4 Score=43.12 Aligned_cols=65 Identities=12% Similarity=0.031 Sum_probs=38.9
Q ss_pred cCCCccchhhHHHHHH--HHHHHHH-cCCcEEE-EeeCceeec-c-------CCC---------H--------HHHHHHH
Q psy3680 43 QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIF-CIVDLHSIT-I-------KQK---------H--------KDLKENI 93 (422)
Q Consensus 43 ~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~i-lIaD~hAlt-~-------~~~---------~--------~~i~~~~ 93 (422)
.|+|.+||||..+.+. -+.++++ .|.++.+ .-.|-|.+- . ..+ + +-..++.
T Consensus 11 ~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (338)
T cd00818 11 YANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAKCREFALRYV 90 (338)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHHHHHHHHHHH
Confidence 4679999999987554 3445454 5777644 344555542 1 111 2 2223455
Q ss_pred HHHHHHHHHcCCCC
Q psy3680 94 QLMAASLLACGIDP 107 (422)
Q Consensus 94 ~~i~a~~lA~Gldp 107 (422)
..+.+++.+.|+.+
T Consensus 91 ~~~~~~~~~lgi~~ 104 (338)
T cd00818 91 DEQEEQFQRLGVWV 104 (338)
T ss_pred HHHHHHHHHhCcee
Confidence 67778888899943
No 113
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=80.88 E-value=6.2 Score=39.37 Aligned_cols=66 Identities=11% Similarity=0.070 Sum_probs=44.4
Q ss_pred cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHH
Q psy3680 171 YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIV 250 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~ 250 (422)
.++|....|+--+|-+.+-|.+++-+| .|.-++ ..|++-.- | |=-||+- ..+|+...-+..
T Consensus 142 v~P~~a~FGeKD~QQl~vIrrmv~dL~--------~~v~I~---~~ptvRe~-d-GLA~SSR------N~~Ls~~eR~~A 202 (282)
T TIGR00018 142 VQPDVAYFGEKDAQQLAVIRKLVADLF--------LDIEIV---PVPIVREE-D-GLALSSR------NVYLTAEQRKIA 202 (282)
T ss_pred cCCCeeEecccHHHHHHHHHHHHHHcC--------CCceEE---EeCceECC-C-CCchhhc------cccCCHHHHHHH
Confidence 478999999999999999999999988 355555 35666553 3 3577766 345554433333
Q ss_pred HHhhh
Q psy3680 251 RKCKK 255 (422)
Q Consensus 251 kKI~~ 255 (422)
..|-+
T Consensus 203 ~~l~~ 207 (282)
T TIGR00018 203 PGLYR 207 (282)
T ss_pred HHHHH
Confidence 33333
No 114
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=80.71 E-value=1.2 Score=50.81 Aligned_cols=73 Identities=19% Similarity=0.176 Sum_probs=44.5
Q ss_pred cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCC-eecccCCCCcccccCCCCCcccccCCCCCCCcEeccC-----
Q psy3680 171 YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIP-QLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD----- 244 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P-~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D----- 244 (422)
+-+|+...|.||....-. +-++.... ..| ..| ..++ .+..+...+ |+|||||.+| .|.+.|
T Consensus 477 ~P~d~~~~G~Dii~fw~~-~~~~~~~~-~~~---~~Pfk~v~---~hG~v~d~~--G~KMSKS~GN---~i~p~~~i~~y 543 (861)
T TIGR00422 477 YPTDLLVTGYDIIFFWVA-RMIFRSLA-LTG---QVPFKEVY---IHGLVRDEQ--GRKMSKSLGN---VIDPLDVIEKY 543 (861)
T ss_pred CCcceeecchhhhhHHHH-HHHHHHHH-hcC---CCchheEE---EeeEEECCC--CCCCCcCCCC---CCCHHHHHHHh
Confidence 568999999999876443 33332211 112 234 4444 366766543 5899999997 887654
Q ss_pred CHHHHHHHhhhh
Q psy3680 245 PPEVIVRKCKKA 256 (422)
Q Consensus 245 sp~~I~kKI~~A 256 (422)
+++.++=.+...
T Consensus 544 gaDalR~~l~~~ 555 (861)
T TIGR00422 544 GADALRFTLASL 555 (861)
T ss_pred ChHHHHHHHHhC
Confidence 456666555543
No 115
>KOG1147|consensus
Probab=80.64 E-value=4.6 Score=43.48 Aligned_cols=75 Identities=20% Similarity=0.267 Sum_probs=43.7
Q ss_pred eecCCCccchhhHHHHHHHHHHHHHcCC-cEEEEeeCceeeccCCCHH-HHHHHHHHHHHHHHHcCCCCCceEEEEcCCC
Q psy3680 41 GIQPTGTLHLGNYFGAVQTWSALQNKGE-DVIFCIVDLHSITIKQKHK-DLKENIQLMAASLLACGIDPQKSILFQQSQV 118 (422)
Q Consensus 41 Gi~PTG~lHLGny~g~i~~~~~lq~~g~-~~~ilIaD~hAlt~~~~~~-~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi 118 (422)
-=+|||.+||||.--|+.++- ++.++. ++++-. | ..+|+ +-.+--..|..++--.||.|++++ .-||+
T Consensus 206 PPEpSGyLHIGHAKAALLNqY-fa~~~~G~LIvRF-D------DTNPaKE~~eFe~~IleDl~~LgIkpd~~T--yTSDy 275 (712)
T KOG1147|consen 206 PPEPSGYLHIGHAKAALLNQY-FAQAYQGKLIVRF-D------DTNPAKENEEFEDVILEDLSLLGIKPDRVT--YTSDY 275 (712)
T ss_pred CCCCCceeehhhHHHHHHHHH-HHHhcCceEEEEe-c------CCCcchhhHHHHHHHHHHHHHhCcCcceee--echhh
Confidence 347889999999888877764 444432 333222 2 22332 222333456677777899999755 45664
Q ss_pred -cchhHHH
Q psy3680 119 -PEHTQLA 125 (422)
Q Consensus 119 -~e~~el~ 125 (422)
.++..++
T Consensus 276 F~~i~dyc 283 (712)
T KOG1147|consen 276 FDEIMDYC 283 (712)
T ss_pred HHHHHHHH
Confidence 3344443
No 116
>PLN02943 aminoacyl-tRNA ligase
Probab=80.44 E-value=1.4 Score=50.96 Aligned_cols=72 Identities=18% Similarity=0.189 Sum_probs=44.7
Q ss_pred cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCC-eecccCCCCcccccCCCCCcccccCCCCCCCcEeccC-----
Q psy3680 171 YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIP-QLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD----- 244 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P-~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D----- 244 (422)
|-+|+.+.|.||. .+=.+|-++.-.. ..| ..| ..+. .+..+...+ |+|||||.+| .|+..|
T Consensus 535 yP~dl~~~G~Dii-~fW~a~m~~~~~~-~~~---~~Pf~~v~---~hg~v~~~~--G~KMSKS~GN---~i~p~~~i~~y 601 (958)
T PLN02943 535 YPTTVLETGHDIL-FFWVARMVMMGIE-FTG---TVPFSYVY---LHGLIRDSQ--GRKMSKTLGN---VIDPLDTIKEF 601 (958)
T ss_pred CCCeEEEEeehHH-HHHHHHHHHhhhh-hcC---CCChheEE---EeccEECCC--CCcccCcCCC---CCCHHHHHHhc
Confidence 5689999999998 3455665543221 012 235 2233 366665543 5899999987 887765
Q ss_pred CHHHHHHHhhh
Q psy3680 245 PPEVIVRKCKK 255 (422)
Q Consensus 245 sp~~I~kKI~~ 255 (422)
.++.++=.+..
T Consensus 602 gaDalR~~l~~ 612 (958)
T PLN02943 602 GTDALRFTLAL 612 (958)
T ss_pred CChHHHHHHHh
Confidence 46666655554
No 117
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=79.95 E-value=1.4 Score=47.70 Aligned_cols=70 Identities=20% Similarity=0.147 Sum_probs=43.1
Q ss_pred cEEeecCchhHHHHH-HHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC-----CHH
Q psy3680 174 THIPAGLDQIHNINL-ANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD-----PPE 247 (422)
Q Consensus 174 ~~vpvG~DQ~~hiel-aRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D-----sp~ 247 (422)
++...|.|+...+.+ ---+..-.+. -++.|..++ .+..+. + + |+|||||.+| .|+..| +++
T Consensus 289 ~~~~~G~D~~~Fh~~~~p~~l~~~~~----~~~~P~~v~---~~G~v~-~-~-G~KMSKS~GN---~I~p~dli~~yGaD 355 (556)
T PRK12268 289 SYYFIGKDNIPFHSIIWPAMLLGSGE----PLKLPDEIV---SSEYLT-L-E-GGKFSKSRGW---GIWVDDALERYPPD 355 (556)
T ss_pred EEEEEeeccCcchHHHHHHHHHhcCC----CCCCCCEee---ccCCEE-E-C-CeeeccCCCc---ccCHHHHHHHcCcH
Confidence 478889999875442 2222222221 145676666 355553 3 3 5899999997 888865 567
Q ss_pred HHHHHhhhh
Q psy3680 248 VIVRKCKKA 256 (422)
Q Consensus 248 ~I~kKI~~A 256 (422)
.++=.+.+.
T Consensus 356 alR~~ll~~ 364 (556)
T PRK12268 356 YLRYYLAAN 364 (556)
T ss_pred HHHHHHHhc
Confidence 777666653
No 118
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=79.92 E-value=1.6 Score=50.75 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=37.6
Q ss_pred ccCccEEeecCchhHHHHHHHHHHHHhccccCccCCCC-eecccCCCCcccccCCCCCcccccCCCCCCCcEec
Q psy3680 170 LYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIP-QLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEI 242 (422)
Q Consensus 170 ~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P-~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L 242 (422)
.|-+|+...|.||.. +=.+|-++..... .| ..| ..++ .+.+|.+-+ |+|||||.+| .|..
T Consensus 536 ~~P~d~~~~G~Dii~-~W~arm~~~~~~~-~~---~~Pfk~v~---~HG~v~d~~--G~KMSKSlGN---vIdP 596 (995)
T PTZ00419 536 FFPTSLLETGSDILF-FWVARMVMMSLHL-TD---KLPFKTVF---LHAMVRDSQ--GEKMSKSKGN---VIDP 596 (995)
T ss_pred cCCCcEEEechhHHh-HHHHHHHHHHHHh-cC---CCChHHHh---ccceEECCC--CCCcccCCCC---cCCh
Confidence 357899999999876 3444444443311 11 245 2344 477776643 5899999998 7644
No 119
>PLN02381 valyl-tRNA synthetase
Probab=79.73 E-value=1.5 Score=51.41 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=38.8
Q ss_pred cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCe-ecccCCCCcccccCCCCCcccccCCCCCCCcEecc
Q psy3680 171 YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQ-LLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEIT 243 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~-~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~ 243 (422)
|-+|+..-|.||. ++=.+|-++..+.. .| ..|- .++ .+.+|.+-+ |+|||||.+| .|...
T Consensus 607 ~P~d~~~~G~Dii-~~W~~rmi~~~~~~-~~---~~PFk~v~---~hG~V~D~~--G~KMSKS~GN---vIdP~ 667 (1066)
T PLN02381 607 YPTSVLETGHDIL-FFWVARMVMMGMQL-GG---DVPFRKVY---LHPMIRDAH--GRKMSKSLGN---VIDPL 667 (1066)
T ss_pred CCCeeeeecchhh-hhHHHHHHHHHHHh-CC---CCchHHhe---ecceEECCC--CCCCCCCCCC---CCCHH
Confidence 5799999999998 44555555544321 12 2342 232 477777754 5899999998 77653
No 120
>PLN02882 aminoacyl-tRNA ligase
Probab=77.31 E-value=4.4 Score=47.95 Aligned_cols=61 Identities=30% Similarity=0.282 Sum_probs=36.5
Q ss_pred cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEecc
Q psy3680 171 YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEIT 243 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~ 243 (422)
+=+|+..-|.||.... +.+-++...- .+|. +.|..++ .+..+..= .|+|||||.+| .|...
T Consensus 566 ~PaD~i~eG~Dq~RgW-f~~ll~~s~~-l~~~--~pfk~Vi---vhG~vlde--~G~KMSKSlGN---vIdP~ 626 (1159)
T PLN02882 566 FPADFVAEGLDQTRGW-FYTLMVLSTA-LFDK--PAFKNLI---CNGLVLAE--DGKKMSKSLKN---YPDPN 626 (1159)
T ss_pred CCceEEEEecchhhhH-HHHHHHHHHH-hcCC--CCcceeE---EccEEECC--CCCCcccCCCC---CCCHH
Confidence 4599999999998865 3333333211 1231 2344454 35555432 36899999997 76543
No 121
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=77.31 E-value=2.6 Score=43.62 Aligned_cols=93 Identities=17% Similarity=0.180 Sum_probs=50.6
Q ss_pred cCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEe-eCceeec------c----------CCCHHH--------HHHHHH
Q psy3680 43 QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCI-VDLHSIT------I----------KQKHKD--------LKENIQ 94 (422)
Q Consensus 43 ~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilI-aD~hAlt------~----------~~~~~~--------i~~~~~ 94 (422)
-|+|.|||||..+.+. -+.++++ .|.++++.- .|-|++- + ..++++ .+++..
T Consensus 11 y~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (382)
T cd00817 11 NVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWEWKEESGG 90 (382)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHHHHHHHHH
Confidence 4679999999887654 4556666 576664433 3555431 0 123333 244556
Q ss_pred HHHHHHHHcCCCCCceEEEEcCCCcchhHHH-HHHhhccchhh
Q psy3680 95 LMAASLLACGIDPQKSILFQQSQVPEHTQLA-WVLTCLCTVNR 136 (422)
Q Consensus 95 ~i~a~~lA~Gldp~k~~i~~qSdi~e~~el~-w~l~~~~~~~~ 136 (422)
.+.+++.++|+..+=-.++.-++ |++.+.. |++..+...|.
T Consensus 91 ~~~~~~~~lgi~~Dw~~~~~T~~-~~~~~~v~~~f~~L~~~G~ 132 (382)
T cd00817 91 KIREQLKRLGASVDWSREYFTMD-PGLSRAVQEAFVRLYEKGL 132 (382)
T ss_pred HHHHHHHHhCceeecCCCcCCCC-HHHHHHHHHHHHHHHHCCC
Confidence 67788888898654112233333 5565543 44443333333
No 122
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=76.70 E-value=2.2 Score=45.89 Aligned_cols=66 Identities=20% Similarity=0.177 Sum_probs=41.4
Q ss_pred EEeecCchhHHHHHHH-HHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC-----CHHH
Q psy3680 175 HIPAGLDQIHNINLAN-HLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD-----PPEV 248 (422)
Q Consensus 175 ~vpvG~DQ~~hielaR-dia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D-----sp~~ 248 (422)
+.+.|.|....+.+.- -+..-.+ ++.|..++ .+..+.. + |+|||||.+| .|++.| +++.
T Consensus 285 v~~~G~Di~~~h~~~~~a~l~~~~------~~~~~~~~---~~g~v~~--~-g~KmSKS~Gn---~i~~~d~i~~~g~D~ 349 (530)
T TIGR00398 285 IHFIGKDIVRFHTIYWPAMLMGLG------LPLPTQVF---SHGYLTV--E-GGKMSKSLGN---VVDPSDLLARFGADI 349 (530)
T ss_pred EEEEecccchhHHHHHHHHHHhCC------CCCCCEEE---eeccEEE--C-CceecccCCc---eecHHHHHHHcCchH
Confidence 8899999998654321 1222222 34576766 3555542 3 5899999987 998866 4555
Q ss_pred HHHHhhh
Q psy3680 249 IVRKCKK 255 (422)
Q Consensus 249 I~kKI~~ 255 (422)
++=.+.+
T Consensus 350 lR~~l~~ 356 (530)
T TIGR00398 350 LRYYLLK 356 (530)
T ss_pred HHHHHhh
Confidence 5555554
No 123
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=76.23 E-value=9.5 Score=43.60 Aligned_cols=36 Identities=25% Similarity=0.256 Sum_probs=22.6
Q ss_pred CcccccCCCCCcccccCCCCCCCcEeccC-----CHHHHHHHhhhh
Q psy3680 216 AGKVKSLKDPSKKMSKSDLDSNSKIEITD-----PPEVIVRKCKKA 256 (422)
Q Consensus 216 ~~~lp~L~~~~~KMSKS~~n~~s~I~L~D-----sp~~I~kKI~~A 256 (422)
+.+|-+-+ |+|||||.+| .|...| ..+.++--...+
T Consensus 515 hGLVrDe~--G~KMSKS~GN---vIDP~d~I~~yGaDAlRf~la~~ 555 (877)
T COG0525 515 HGLVRDEQ--GRKMSKSKGN---VIDPLDVIDKYGADALRFTLASL 555 (877)
T ss_pred eeeEEcCC--CCCCcccCCC---cCCHHHHHHHhChHHHHHHHHhc
Confidence 45555433 5899999998 776654 345555444443
No 124
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=75.66 E-value=3.9 Score=47.68 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=29.3
Q ss_pred cEEEEee-cCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEee-Cceee
Q psy3680 36 QRIFSGI-QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIV-DLHSI 80 (422)
Q Consensus 36 ~~i~tGi-~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIa-D~hAl 80 (422)
..|.+|. -|||.||+||.++... -++++++ .|.++.+..| |-|++
T Consensus 62 f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl 111 (995)
T PTZ00419 62 FVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGI 111 (995)
T ss_pred EEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCch
Confidence 4455554 4689999999887544 4666776 5877665554 44454
No 125
>KOG2007|consensus
Probab=73.27 E-value=2.3 Score=45.28 Aligned_cols=85 Identities=21% Similarity=0.219 Sum_probs=54.7
Q ss_pred cchhhHHHhhhhhhccCccEEeecCchh-HHHH--HHHHHHHHhccc-cCccCCCCeecccCCCCcccccCCCCCccccc
Q psy3680 156 GLFLYPVLQAADILLYKATHIPAGLDQI-HNIN--LANHLTQLFNNK-FDKIFPIPQLLPQDESAGKVKSLKDPSKKMSK 231 (422)
Q Consensus 156 gl~~YPvLqAaDil~~~a~~vpvG~DQ~-~hie--laRdia~r~n~~-~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSK 231 (422)
|.=+-.--||+||+-.+-||--||.|=. +|+| +|.--|. |+.. +...| ++. .+-.| . |.||||
T Consensus 242 GWHIECSaMas~~lG~~lDIH~GG~DL~FPHHeNEiAQ~eA~-~~~~~wVnYf-----lHt--GhL~i----~-g~KMSK 308 (586)
T KOG2007|consen 242 GWHIECSAMASAILGSQLDIHGGGIDLAFPHHENEIAQSEAA-FDDSQWVNYF-----LHT--GHLTI----N-GEKMSK 308 (586)
T ss_pred CceeeeHHHHHHhhccccceecCcccccCCCcccHHHHHHHH-hcCCccceeE-----EEc--Ceeee----c-cchhhh
Confidence 4445556789999999999999999975 5665 4443333 3322 22222 341 22222 2 479999
Q ss_pred CCCCCCCcEeccC-----CHHHHHHHhhhh
Q psy3680 232 SDLDSNSKIEITD-----PPEVIVRKCKKA 256 (422)
Q Consensus 232 S~~n~~s~I~L~D-----sp~~I~kKI~~A 256 (422)
|.+| .|-+-+ +|.+++-.++..
T Consensus 309 SLkN---FiTIke~Lk~~sp~qLRl~fl~~ 335 (586)
T KOG2007|consen 309 SLKN---FITIKEALKKYSPRQLRLAFLLH 335 (586)
T ss_pred hhcc---ceeHHHHHHhcCHHHHHHHHHHH
Confidence 9997 887765 677777666653
No 126
>KOG0432|consensus
Probab=71.87 E-value=4.4 Score=45.91 Aligned_cols=19 Identities=37% Similarity=0.345 Sum_probs=15.4
Q ss_pred CCcccccCCCCCcccccCCCC
Q psy3680 215 SAGKVKSLKDPSKKMSKSDLD 235 (422)
Q Consensus 215 ~~~~lp~L~~~~~KMSKS~~n 235 (422)
.+++|-.-+ |+|||||.+|
T Consensus 582 LH~mVRDa~--GRKMSKSLGN 600 (995)
T KOG0432|consen 582 LHGLVRDAH--GRKMSKSLGN 600 (995)
T ss_pred echhhcccc--ccccchhhcc
Confidence 378887754 5999999998
No 127
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=71.48 E-value=5.9 Score=45.03 Aligned_cols=74 Identities=18% Similarity=0.194 Sum_probs=44.6
Q ss_pred CcEEEE-eecCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEee-Cceeec------c--CCCHH-------------H
Q psy3680 35 PQRIFS-GIQPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIV-DLHSIT------I--KQKHK-------------D 88 (422)
Q Consensus 35 ~~~i~t-Gi~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIa-D~hAlt------~--~~~~~-------------~ 88 (422)
+..+.+ .--|||.|||||..+.+. -+.++++ .|+++.+..| |-|++- + ..+++ -
T Consensus 39 ~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~ 118 (800)
T PRK13208 39 VYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCREL 118 (800)
T ss_pred cEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHH
Confidence 345555 346789999999887554 4556666 5877655444 444441 1 11222 2
Q ss_pred HHHHHHHHHHHHHHcCCCCC
Q psy3680 89 LKENIQLMAASLLACGIDPQ 108 (422)
Q Consensus 89 i~~~~~~i~a~~lA~Gldp~ 108 (422)
..++...+..++.+.|+..+
T Consensus 119 ~~~~~~~~~~~~~~lg~s~D 138 (800)
T PRK13208 119 TDEDEKKFRELWRRLGLSVD 138 (800)
T ss_pred HHHHHHHHHHHHHHhCeeec
Confidence 33456677888888887544
No 128
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=71.23 E-value=32 Score=34.31 Aligned_cols=27 Identities=7% Similarity=0.097 Sum_probs=24.0
Q ss_pred cCccEEeecCchhHHHHHHHHHHHHhc
Q psy3680 171 YKATHIPAGLDQIHNINLANHLTQLFN 197 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~hielaRdia~r~n 197 (422)
.++|...-|..-.|.+.+-+++++.+|
T Consensus 139 v~Pd~a~FG~kd~qq~~~l~~~~~~l~ 165 (281)
T PRK00380 139 VQPDVAYFGEKDYQQLAVIRRMVADLN 165 (281)
T ss_pred cCCCeeEECCCcchhHHHHHHHHHHcC
Confidence 478998899999999999999998887
No 129
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=71.22 E-value=6.2 Score=46.91 Aligned_cols=77 Identities=29% Similarity=0.336 Sum_probs=44.1
Q ss_pred CCccchhhHHH-hhhhhh-ccCccEEeecCchhHHHHHHHHHHHHhccccCccCCCC-eecccCCCCcccccCCCCCccc
Q psy3680 153 SPTGLFLYPVL-QAADIL-LYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIP-QLLPQDESAGKVKSLKDPSKKM 229 (422)
Q Consensus 153 ~~~gl~~YPvL-qAaDil-~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P-~~li~~~~~~~lp~L~~~~~KM 229 (422)
.+++.+-||-- ..-++- .|=+|+.+=|.||....-..-=+..-. .+| ..| ..++ .+..+.+- + |+||
T Consensus 652 ~p~a~~~~P~~~~~~~f~~~fPaD~i~eG~Dq~rgWf~s~l~~s~~--l~~---~~PfK~Vl---vHG~Vld~-d-G~KM 721 (1205)
T PTZ00427 652 MPYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGWFYTLLVISTL--LFD---KAPFKNLI---CNGLVLAS-D-GKKM 721 (1205)
T ss_pred ChHHHhCCCcccchhhHhccCCceEEEEecchhccHHHHHHHHHHH--hcC---CCCcceeE---EccEEEcC-C-CCCc
Confidence 45566677742 222322 367999999999987554333222211 122 134 3344 36666543 3 5899
Q ss_pred ccCCCCCCCcEec
Q psy3680 230 SKSDLDSNSKIEI 242 (422)
Q Consensus 230 SKS~~n~~s~I~L 242 (422)
|||.+| .|..
T Consensus 722 SKSlGN---vIDP 731 (1205)
T PTZ00427 722 SKRLKN---YPDP 731 (1205)
T ss_pred ccCCCC---CCCH
Confidence 999998 6654
No 130
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=70.73 E-value=5.9 Score=45.59 Aligned_cols=50 Identities=28% Similarity=0.258 Sum_probs=29.8
Q ss_pred ccEEeecCchhHHH---HHHHHHHHHhccccCccCCCC-eecccCCCCcccccCCCCCcccccCCCC
Q psy3680 173 ATHIPAGLDQIHNI---NLANHLTQLFNNKFDKIFPIP-QLLPQDESAGKVKSLKDPSKKMSKSDLD 235 (422)
Q Consensus 173 a~~vpvG~DQ~~hi---elaRdia~r~n~~~g~~f~~P-~~li~~~~~~~lp~L~~~~~KMSKS~~n 235 (422)
||+..=|+||.--- -+..-.|- +|+ .| ..++ ++..+..- .|+|||||.+|
T Consensus 556 aD~~lEGsDQ~RGWF~Ssl~~s~a~-~~~-------aPYk~vl---tHGfvlDe--~GrKMSKSlGN 609 (933)
T COG0060 556 ADFYLEGSDQTRGWFYSSLLTSTAL-FGR-------APYKNVL---THGFVLDE--KGRKMSKSLGN 609 (933)
T ss_pred CcEEEEeccccchhHHHHHHHHHHH-cCC-------chHHHHh---hcccEECC--CCCCccccCCC
Confidence 69999999996422 22222221 332 23 2333 46666653 36999999998
No 131
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=68.97 E-value=9.4 Score=43.44 Aligned_cols=100 Identities=17% Similarity=0.215 Sum_probs=59.9
Q ss_pred CcEEEEee-cCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEeeCceeecc---------CCCHH-HHHHHHHHHHHHH
Q psy3680 35 PQRIFSGI-QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIVDLHSITI---------KQKHK-DLKENIQLMAASL 100 (422)
Q Consensus 35 ~~~i~tGi-~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIaD~hAlt~---------~~~~~-~i~~~~~~i~a~~ 100 (422)
+..|+.-+ -|||.||+||..+-.. -+.++++ .|.+| ++==+|||.=. ..+|. -...|+.++..++
T Consensus 35 Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNV-L~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~ql 113 (814)
T COG0495 35 KFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNV-LHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQL 113 (814)
T ss_pred ceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCee-cccCcccccCchHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 44454444 5899999999654222 3555666 47654 44445776521 23554 4578899999999
Q ss_pred HHcCCCCCceEEEEcCCCcchhH-HHHHHhhccchhh
Q psy3680 101 LACGIDPQKSILFQQSQVPEHTQ-LAWVLTCLCTVNR 136 (422)
Q Consensus 101 lA~Gldp~k~~i~~qSdi~e~~e-l~w~l~~~~~~~~ 136 (422)
.+.|+..+=..=|.-.| |++.. ..|++..+.-.|.
T Consensus 114 k~lG~siDW~Ref~T~D-p~Yyk~~QW~F~kL~ekGL 149 (814)
T COG0495 114 KSLGFSIDWRREFATCD-PEYYKWIQWQFLKLYEKGL 149 (814)
T ss_pred HHhCCccccccceecCC-ccHHHHHHHHHHHHHHCCC
Confidence 99988665333343344 44433 3677665544443
No 132
>PLN02224 methionine-tRNA ligase
Probab=68.94 E-value=5.5 Score=43.99 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=46.0
Q ss_pred cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC-----C
Q psy3680 171 YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD-----P 245 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D-----s 245 (422)
..+++..+|.|-..++.+.= -|--+.. | ++.|..++ .+..+ .+ + |+|||||.+| .|+..+ +
T Consensus 320 w~~~v~~iGKDii~fH~i~w-pa~l~~~--g--~~~P~~i~---~~g~l-~~-e-G~KMSKS~GN---~i~p~e~l~~yg 385 (616)
T PLN02224 320 WPASLHLIGKDILRFHAVYW-PAMLMSA--G--LELPKMVF---GHGFL-TK-D-GMKMGKSLGN---TLEPFELVQKFG 385 (616)
T ss_pred CCcceEEEeecccccHHHHH-HHHHHHC--C--CCCCcEEE---ecccE-ec-C-CccccccCCc---cCCHHHHHHHcC
Confidence 35689999999998644322 1111111 2 45777776 24444 33 3 5899999987 888876 5
Q ss_pred HHHHHHHhhhh
Q psy3680 246 PEVIVRKCKKA 256 (422)
Q Consensus 246 p~~I~kKI~~A 256 (422)
++.++=.+.+.
T Consensus 386 aD~~R~yLl~~ 396 (616)
T PLN02224 386 PDAVRYFFLRE 396 (616)
T ss_pred cHHHHHHHHhc
Confidence 77777777664
No 133
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=68.41 E-value=20 Score=37.64 Aligned_cols=74 Identities=16% Similarity=0.033 Sum_probs=43.3
Q ss_pred cchhhHHHhhhhhhccCccEEeecCchh-HHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCC
Q psy3680 156 GLFLYPVLQAADILLYKATHIPAGLDQI-HNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDL 234 (422)
Q Consensus 156 gl~~YPvLqAaDil~~~a~~vpvG~DQ~-~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~ 234 (422)
|.-+=..-|+..++--.-|+.-+|.|-. +|+|.-+-..... +|+. +-+...+ +.-....+ ++|||||.+
T Consensus 225 GWHiECsam~~~~lg~~~Dih~GG~DLifpHheneiaq~~A~---~g~~-~~~~~w~----H~g~l~~~--G~KMSKSlG 294 (411)
T TIGR03447 225 GWHIECSAIATNRLGAGFDIQGGGSDLIFPHHEFSAAHAEAA---TGVR-RMARHYV----HAGMIGLD--GEKMSKSLG 294 (411)
T ss_pred hhHHHHHHHHHHHcCCceecccCcccccccchHhHHHHHHHh---cCCC-CcceEEE----ECCEECcC--CCCccCcCC
Confidence 3345566778888777889999999975 5666433332222 2210 1122222 22233443 589999998
Q ss_pred CCCCcEec
Q psy3680 235 DSNSKIEI 242 (422)
Q Consensus 235 n~~s~I~L 242 (422)
| .|.+
T Consensus 295 N---~i~~ 299 (411)
T TIGR03447 295 N---LVFV 299 (411)
T ss_pred C---CCCH
Confidence 7 7766
No 134
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=67.69 E-value=23 Score=32.80 Aligned_cols=67 Identities=19% Similarity=0.162 Sum_probs=39.4
Q ss_pred ecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCcee-ec--cCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCC
Q psy3680 42 IQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHS-IT--IKQKHKDLKENIQLMAASLLACGIDPQKSILFQQSQV 118 (422)
Q Consensus 42 i~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hA-lt--~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi 118 (422)
|+| +|+||..- +... +.+.. ++++.++.... -+ ++.+.++-.+.++. .+...|+|.+++.|.-=.|+
T Consensus 8 F~P---~H~GHl~~-i~~a--~~~~~-~vii~i~s~~~~~~~~~p~~~~eR~~mi~~---~~~~~~~~~~rv~i~pi~D~ 77 (181)
T cd02168 8 FQP---FHNGHLAV-VLIA--LEKAK-KVIILIGSARTARNIKNPWTSEEREVMIEA---ALSDAGADLARVHFRPLRDH 77 (181)
T ss_pred cCC---CCHHHHHH-HHHH--HHHCC-eEEEEeCCCCCCCCCCCCcCHHHHHHHHHH---HHhccCCCcceEEEEecCCC
Confidence 555 89999763 4444 33333 78887876632 22 33444444443333 23346899999888766664
No 135
>PLN02286 arginine-tRNA ligase
Probab=67.37 E-value=8 Score=42.36 Aligned_cols=63 Identities=11% Similarity=0.111 Sum_probs=42.1
Q ss_pred ccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC
Q psy3680 173 ATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD 244 (422)
Q Consensus 173 a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D 244 (422)
--+-.+|.||..|+..-..+++.++....+.-. ...+ ....+|.++. ++||||-.++ .|.|.|
T Consensus 329 ~~IyVvg~~q~~hf~~v~~~l~~lG~~~~~~~~--~l~h--~~~g~V~~~~--g~kmStR~G~---~v~L~d 391 (576)
T PLN02286 329 WIIYVTDVGQQQHFDMVFKAAKRAGWLPEDTYP--RLEH--VGFGLVLGED--GKRFRTRSGE---VVRLVD 391 (576)
T ss_pred EEEEEEeCcHHHHHHHHHHHHHHcCCCccccCC--ceEE--EeeccEECCC--CCcccCCCCC---eeEHHH
Confidence 345668999999999999999999742000000 1222 1355664453 4699999886 999976
No 136
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=67.04 E-value=7.2 Score=45.81 Aligned_cols=47 Identities=23% Similarity=0.223 Sum_probs=31.0
Q ss_pred CCcEEEEee-cCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEeeCc-eee
Q psy3680 34 FPQRIFSGI-QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIVDL-HSI 80 (422)
Q Consensus 34 ~~~~i~tGi-~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIaD~-hAl 80 (422)
.+..|+.|. -+||.||+||.++... -++++++ .|+++.+.-|-. |+|
T Consensus 48 ~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Gl 99 (1052)
T PRK14900 48 PPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGI 99 (1052)
T ss_pred CCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccch
Confidence 345666654 4689999999887544 4666776 587776665544 444
No 137
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=66.16 E-value=17 Score=39.77 Aligned_cols=68 Identities=18% Similarity=0.142 Sum_probs=42.0
Q ss_pred EEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC-----CHHHH
Q psy3680 175 HIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD-----PPEVI 249 (422)
Q Consensus 175 ~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D-----sp~~I 249 (422)
+.++|.|-..++.+-=-. |=...| .++|..++. +..+. + + |+|||||.+| .|+..+ +++.+
T Consensus 291 vhfIGKDii~FHav~wPa---mL~~~~--~~lP~~i~a---hg~l~-~-~-G~KmSKSrG~---~V~~~~~~~~~~~D~l 356 (558)
T COG0143 291 VHFIGKDIIRFHAVYWPA---MLMAAG--LPLPTRIFA---HGFLT-L-E-GQKMSKSRGN---VVDPDELLEQYGVDAL 356 (558)
T ss_pred EEEeccccCcchhhHHHH---HHHhCC--CCCCCEEEe---eeeEE-E-C-CccccccCCc---EEeHHHHHHHcCchHh
Confidence 777888887776653322 111112 347777762 33332 2 3 4799999987 999865 56677
Q ss_pred HHHhhhh
Q psy3680 250 VRKCKKA 256 (422)
Q Consensus 250 ~kKI~~A 256 (422)
+=.+.+.
T Consensus 357 RYyL~~~ 363 (558)
T COG0143 357 RYYLARE 363 (558)
T ss_pred HHHHHHh
Confidence 6666664
No 138
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=64.32 E-value=11 Score=37.45 Aligned_cols=27 Identities=7% Similarity=0.149 Sum_probs=23.2
Q ss_pred cCccEEeecCchhHHHHHHHHHHHHhc
Q psy3680 171 YKATHIPAGLDQIHNINLANHLTQLFN 197 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~hielaRdia~r~n 197 (422)
.++|..--|..-.|.+++-+.+++.+|
T Consensus 140 v~Pd~~~FG~kd~gq~~~Lk~~~~dl~ 166 (277)
T cd00560 140 VQPDRAYFGEKDAQQLAVIRRMVRDLN 166 (277)
T ss_pred cCCCeEEECCCccccHHHHHHHHHHcC
Confidence 367878889999999999999988876
No 139
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=64.23 E-value=4.9 Score=45.83 Aligned_cols=65 Identities=17% Similarity=0.253 Sum_probs=42.1
Q ss_pred CCCccchhhHHHH--HHHHHHHHH-cCCcEEEEeeCceeec-c----------------CCCHHHH--------HHHHHH
Q psy3680 44 PTGTLHLGNYFGA--VQTWSALQN-KGEDVIFCIVDLHSIT-I----------------KQKHKDL--------KENIQL 95 (422)
Q Consensus 44 PTG~lHLGny~g~--i~~~~~lq~-~g~~~~ilIaD~hAlt-~----------------~~~~~~i--------~~~~~~ 95 (422)
+||+||+||.+.. +--++++++ .|+++.+.-+=.||=+ . ....++. .++...
T Consensus 44 VTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~ 123 (877)
T COG0525 44 VTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGT 123 (877)
T ss_pred CCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHH
Confidence 5999999996542 225667777 6888888888888632 1 0122222 234456
Q ss_pred HHHHHHHcCCCCC
Q psy3680 96 MAASLLACGIDPQ 108 (422)
Q Consensus 96 i~a~~lA~Gldp~ 108 (422)
|..+|...|++.+
T Consensus 124 I~~Q~~rLG~S~D 136 (877)
T COG0525 124 IREQLRRLGVSVD 136 (877)
T ss_pred HHHHHHHhCCCcc
Confidence 7888888887654
No 140
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=63.28 E-value=35 Score=30.92 Aligned_cols=66 Identities=23% Similarity=0.257 Sum_probs=35.3
Q ss_pred ecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCce-eec--cCCCHHHHHHHHHHHHH-HHHHcCCCCCceEEEEcCC
Q psy3680 42 IQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLH-SIT--IKQKHKDLKENIQLMAA-SLLACGIDPQKSILFQQSQ 117 (422)
Q Consensus 42 i~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~h-Alt--~~~~~~~i~~~~~~i~a-~~lA~Gldp~k~~i~~qSd 117 (422)
|+| +|+||.-- ++...+ ...+++++++... ... .+.+.++ +.+++. .+...|+|-+++.+....|
T Consensus 8 FdP---~H~GHl~~-i~~a~~---~~d~l~v~v~s~~~~~~~~~~~~~~~----R~~mi~~~~~~~~~~~~~v~v~~~~d 76 (163)
T cd02166 8 FQP---FHLGHLKV-IKWILE---EVDELIIGIGSAQESHTLENPFTAGE----RVLMIRRALEEEGIDLSRYYIIPVPD 76 (163)
T ss_pred cCC---CCHHHHHH-HHHHHH---HCCEEEEEecCCCCCCCCCCCCCHHH----HHHHHHHHHHhcCCCcCeEEEEecCC
Confidence 566 99999763 444432 2345666664433 332 2334432 222333 2333467777888877666
Q ss_pred C
Q psy3680 118 V 118 (422)
Q Consensus 118 i 118 (422)
.
T Consensus 77 ~ 77 (163)
T cd02166 77 I 77 (163)
T ss_pred C
Confidence 4
No 141
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=61.54 E-value=8.6 Score=41.99 Aligned_cols=60 Identities=15% Similarity=0.098 Sum_probs=41.1
Q ss_pred CccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC
Q psy3680 172 KATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD 244 (422)
Q Consensus 172 ~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D 244 (422)
+--+-.+|.||.+|+.-...+++.++.... -...+ ....+|- + + ++||||-.++ +|.|.|
T Consensus 325 d~~IyV~g~dq~~h~~~l~~~~~~lg~~~~-----~~l~h--~~~g~V~-~-~-g~kmStR~G~---~v~l~d 384 (562)
T PRK12451 325 DKALYVVGPEQSLHFNQFFTVLKKLGYTWV-----DGMEH--VPFGLIL-K-D-GKKMSTRKGR---VVLLEE 384 (562)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHcCCCcc-----cCeEE--EeeeeEe-c-C-CCCCcCCCCC---eeEHHH
Confidence 344667899999999999999999984211 01212 1233443 3 2 4699999886 999976
No 142
>PLN02843 isoleucyl-tRNA synthetase
Probab=60.39 E-value=16 Score=42.70 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=43.6
Q ss_pred CCCcEEEEee-cCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEee-Cceeec---c-----------CCCHHHHHHHH
Q psy3680 33 SFPQRIFSGI-QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIV-DLHSIT---I-----------KQKHKDLKENI 93 (422)
Q Consensus 33 ~~~~~i~tGi-~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIa-D~hAlt---~-----------~~~~~~i~~~~ 93 (422)
+++..+..|. -+||.|||||.++.+. -++++++ .|.++.+..| |-|++- . ..+++++++.+
T Consensus 31 ~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c 110 (974)
T PLN02843 31 GESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKA 110 (974)
T ss_pred CCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHH
Confidence 3344444443 4679999999887554 3556666 5766543333 344431 0 12556665444
Q ss_pred HH--------HHHHHHHcCC--CCCc
Q psy3680 94 QL--------MAASLLACGI--DPQK 109 (422)
Q Consensus 94 ~~--------i~a~~lA~Gl--dp~k 109 (422)
++ +..++...|+ |-++
T Consensus 111 ~~~~~~~~~~~~~~~~~lG~~~Dw~~ 136 (974)
T PLN02843 111 AKFAKKTVDTQRESFKRYGVWGDWEN 136 (974)
T ss_pred HHHHHHHHHHHHHHHHHhCCceecCC
Confidence 33 3456677888 6554
No 143
>KOG0435|consensus
Probab=60.28 E-value=33 Score=38.30 Aligned_cols=102 Identities=22% Similarity=0.244 Sum_probs=59.1
Q ss_pred cCCCcEEEEee-cCCCccchhhHHHH--HHHHHHHHH-cCCcEEEEeeCceeeccC---------C-CHHHHHHHHHHHH
Q psy3680 32 ISFPQRIFSGI-QPTGTLHLGNYFGA--VQTWSALQN-KGEDVIFCIVDLHSITIK---------Q-KHKDLKENIQLMA 97 (422)
Q Consensus 32 ~~~~~~i~tGi-~PTG~lHLGny~g~--i~~~~~lq~-~g~~~~ilIaD~hAlt~~---------~-~~~~i~~~~~~i~ 97 (422)
.+++..|++-| -|||.+|+||...- --.+.++|+ .|.+| |-=-+|.|+=-| . ...--.+|+..+.
T Consensus 55 ~sk~KYiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynV-ihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk 133 (876)
T KOG0435|consen 55 KSKKKYILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNV-IHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMK 133 (876)
T ss_pred cCCCceEEEecCCCCCcccccceEEEEehHHHHHHHHhcCcee-ecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHH
Confidence 44455898888 59999999994320 125667887 57654 333344444212 1 2234467888888
Q ss_pred HHHHHcCCC--CCceEEEEcCC-CcchhH-HHHHHhhccchhhhh
Q psy3680 98 ASLLACGID--PQKSILFQQSQ-VPEHTQ-LAWVLTCLCTVNRLN 138 (422)
Q Consensus 98 a~~lA~Gld--p~k~~i~~qSd-i~e~~e-l~w~l~~~~~~~~l~ 138 (422)
.++...|+. -++-+ |. -|++.. ..|++..+.-.|..-
T Consensus 134 ~Ql~~lg~~FDWdrEi----STC~PdYYKWTQwiFlkLfe~GLAY 174 (876)
T KOG0435|consen 134 QQLKSLGISFDWDREI----STCEPDYYKWTQWIFLKLFEKGLAY 174 (876)
T ss_pred HHHHHcCccccccccc----ccCCcchhHHHHHHHHHHHHhhhhh
Confidence 899888763 33221 21 255433 357776655555443
No 144
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=59.76 E-value=9.9 Score=41.49 Aligned_cols=41 Identities=29% Similarity=0.503 Sum_probs=29.3
Q ss_pred EEEeecCCCccchhhHHHHHH--HHHHHHH-cCCcE--EEEeeCce
Q psy3680 38 IFSGIQPTGTLHLGNYFGAVQ--TWSALQN-KGEDV--IFCIVDLH 78 (422)
Q Consensus 38 i~tGi~PTG~lHLGny~g~i~--~~~~lq~-~g~~~--~ilIaD~h 78 (422)
-|++--|||.+|+||..+++. -+.++.+ .|+++ .+.|+||=
T Consensus 117 e~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G 162 (566)
T TIGR00456 117 EFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWG 162 (566)
T ss_pred EecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchH
Confidence 388999999999999888765 3444444 57654 46677754
No 145
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=59.68 E-value=3.6 Score=45.80 Aligned_cols=64 Identities=22% Similarity=0.093 Sum_probs=41.4
Q ss_pred EEeecCchhHHHHH---HHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC-----CH
Q psy3680 175 HIPAGLDQIHNINL---ANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD-----PP 246 (422)
Q Consensus 175 ~vpvG~DQ~~hiel---aRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D-----sp 246 (422)
+.++|.|-...+.+ |.=++ .+ ++.|..++ .+..+.. + |+|||||.+| .|+..| ++
T Consensus 287 v~~iGkDi~~fH~i~wpa~l~a--~g------~~lP~~v~---~hg~v~~--~-G~KMSKS~GN---vV~p~dlie~yga 349 (673)
T PRK00133 287 YHFIGKDIIYFHTLFWPAMLEG--AG------YRLPTNVF---AHGFLTV--E-GAKMSKSRGT---FIWARTYLDHLDP 349 (673)
T ss_pred EEEEeecchhHHHHHHHHHHHh--CC------CCCCCEEe---eeccEEe--c-CCcccccCCc---ccCHHHHHHHcCc
Confidence 67789888876543 22222 12 45777776 3555543 3 5899999987 888865 56
Q ss_pred HHHHHHhhh
Q psy3680 247 EVIVRKCKK 255 (422)
Q Consensus 247 ~~I~kKI~~ 255 (422)
+.++=.+.+
T Consensus 350 DalR~~ll~ 358 (673)
T PRK00133 350 DYLRYYLAA 358 (673)
T ss_pred hHHHHHHHh
Confidence 666666665
No 146
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=59.42 E-value=13 Score=40.88 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=43.6
Q ss_pred ccEEeecCchhHHHHHHHHHHHHhccccCccCCCC-eecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHH
Q psy3680 173 ATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIP-QLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIV 250 (422)
Q Consensus 173 a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P-~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~ 250 (422)
--+-.+|.||.+|+...+-+++..+.. .+ ..++. .+..++-+ +.+.||||-.++ .|.|.|=-+++.
T Consensus 336 ~~IyV~gadq~~~~~ql~~~l~~~g~~------~~~~~~~h-~~~~l~~~--~~g~kmStR~G~---~vtl~dllde~~ 402 (577)
T COG0018 336 KLIYVLGADQHGHFKQLKAVLELLGYG------PDKEVLLH-QGVGLVRG--GEGVKMSTRAGN---VVTLDDLLDEAG 402 (577)
T ss_pred EEEEEeCCcchhHHHHHHHHHHHhcCC------CccceEEE-EEEeeeEC--CCCccccccCCc---eEEHHHHHHHHH
Confidence 345678999999999999999988743 22 12221 12222222 235799999886 999987544444
No 147
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=59.32 E-value=6.5 Score=45.09 Aligned_cols=75 Identities=19% Similarity=0.143 Sum_probs=44.1
Q ss_pred CCcEEEEee-cCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEee-Cceeec-----------cCCCH-----------
Q psy3680 34 FPQRIFSGI-QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIV-DLHSIT-----------IKQKH----------- 86 (422)
Q Consensus 34 ~~~~i~tGi-~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIa-D~hAlt-----------~~~~~----------- 86 (422)
++..|++|. -+||.||+||.+.... -+.++++ .|.++.+..| |-|++- ...++
T Consensus 33 ~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~ 112 (861)
T TIGR00422 33 PPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREK 112 (861)
T ss_pred CeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHH
Confidence 345566644 4689999999886544 4666666 5877655554 444441 01122
Q ss_pred --HHHHHHHHHHHHHHHHcCCCCC
Q psy3680 87 --KDLKENIQLMAASLLACGIDPQ 108 (422)
Q Consensus 87 --~~i~~~~~~i~a~~lA~Gldp~ 108 (422)
+-..+....+..++...|+..+
T Consensus 113 ~~~~~~~~~~~~~~~~~~lG~s~D 136 (861)
T TIGR00422 113 IWEWKEESGGTIKNQIKRLGASLD 136 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhCeeee
Confidence 1133445667777888886443
No 148
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=59.25 E-value=3.2 Score=43.17 Aligned_cols=66 Identities=23% Similarity=0.165 Sum_probs=37.1
Q ss_pred EEeecCchhHHHHHHHHHH-HHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC-----CHHH
Q psy3680 175 HIPAGLDQIHNINLANHLT-QLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD-----PPEV 248 (422)
Q Consensus 175 ~vpvG~DQ~~hielaRdia-~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D-----sp~~ 248 (422)
++..|.|-..++.+-==.. -..+ +++|..++. +..+. + + |+|||||.+| .||..| +++.
T Consensus 285 v~~iGkDi~~fH~i~~pa~l~a~~------~~lP~~i~~---~~~~~-~-~-g~K~SkS~gn---~i~~~~~~~~~~~D~ 349 (391)
T PF09334_consen 285 VHFIGKDIIRFHAIYWPAMLLAAG------LPLPRRIVV---HGFLT-L-D-GEKMSKSRGN---VIWPDDLLEEYGADA 349 (391)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHCT------B---SEEEE---E--EE-E-T-TCCEETTTTE---SSBHHHHHHHH-HHH
T ss_pred EEEEccchhHHHHHHhHHHHhccc------CCCCCEEEe---eeeEE-E-C-CeeccccCCc---ccCHHHHHHhCChHH
Confidence 7788999877766432211 1122 467877762 44443 3 3 4799999987 998865 4555
Q ss_pred HHHHhhh
Q psy3680 249 IVRKCKK 255 (422)
Q Consensus 249 I~kKI~~ 255 (422)
++=.+.+
T Consensus 350 ~R~~L~~ 356 (391)
T PF09334_consen 350 LRYYLAR 356 (391)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555555
No 149
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=56.40 E-value=15 Score=40.39 Aligned_cols=41 Identities=29% Similarity=0.471 Sum_probs=30.0
Q ss_pred EEeecCCCccchhhHHHHHH--HHHHHHH-cCCcE--EEEeeCcee
Q psy3680 39 FSGIQPTGTLHLGNYFGAVQ--TWSALQN-KGEDV--IFCIVDLHS 79 (422)
Q Consensus 39 ~tGi~PTG~lHLGny~g~i~--~~~~lq~-~g~~~--~ilIaD~hA 79 (422)
||-=-|||.+|+||.-+++. -+.++.+ .|++| .+.|.||=.
T Consensus 123 ~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~ 168 (577)
T COG0018 123 YSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGT 168 (577)
T ss_pred EeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHH
Confidence 78889999999999988776 3444443 67654 567888754
No 150
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=55.21 E-value=1.3e+02 Score=30.12 Aligned_cols=49 Identities=10% Similarity=0.160 Sum_probs=36.2
Q ss_pred cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccC
Q psy3680 171 YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKS 232 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS 232 (422)
.++|.+.-|+--.|-+.+.|.+.+-+| .|.-++ ..+++-.-+ |=-||+-
T Consensus 141 v~Pd~AyFGeKD~QQl~vIr~mV~DL~--------~~VeIv---~vptVRe~D--GLA~SSR 189 (285)
T COG0414 141 VQPDRAYFGEKDYQQLAVIRRMVADLN--------LPVEIV---GVPTVREED--GLALSSR 189 (285)
T ss_pred cCCCeeeeccchHHHHHHHHHHHHHcC--------CCeEEE---ecceeEcCC--ccchhhc
Confidence 478999999999999999999999998 355555 366665543 3456654
No 151
>PLN02610 probable methionyl-tRNA synthetase
Probab=54.90 E-value=9.2 Score=43.61 Aligned_cols=70 Identities=16% Similarity=0.036 Sum_probs=41.5
Q ss_pred EEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC------CHHH
Q psy3680 175 HIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD------PPEV 248 (422)
Q Consensus 175 ~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D------sp~~ 248 (422)
+.++|.|-..++.+.==..- +. -|.-++.|..++ .+..+. . + |+|||||.+| .|+..+ +++.
T Consensus 304 ~hfiGKDi~~fH~i~wPa~L-~a--~g~~~~~p~~i~---~~g~l~-~-e-G~KMSKS~GN---vV~p~~~i~~~yg~D~ 371 (801)
T PLN02610 304 YQFMGKDNVPFHTVMFPSTL-LG--TGENWTMMKTIS---VTEYLN-Y-E-GGKFSKSKGV---GVFGNDAKDTNIPVEV 371 (801)
T ss_pred EEEEeeecchhHHHHHHHHH-Hh--CCCCcCCCCEEE---eccCEe-c-C-CceecCcCCc---ccCHHHHHhccCCchH
Confidence 78899998887754221111 11 122245777776 244432 2 3 4799999987 888754 3455
Q ss_pred HHHHhhhh
Q psy3680 249 IVRKCKKA 256 (422)
Q Consensus 249 I~kKI~~A 256 (422)
++=.+.+.
T Consensus 372 lRyyLl~~ 379 (801)
T PLN02610 372 WRYYLLTN 379 (801)
T ss_pred hHHHhhhc
Confidence 66566663
No 152
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=54.52 E-value=8.2 Score=44.35 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=43.1
Q ss_pred CCcEEEEee-cCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEee-Cceeec------c-----CCCHHH---------
Q psy3680 34 FPQRIFSGI-QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIV-DLHSIT------I-----KQKHKD--------- 88 (422)
Q Consensus 34 ~~~~i~tGi-~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIa-D~hAlt------~-----~~~~~~--------- 88 (422)
++..+.+|. -+||.||+||.+.... -++++++ .|.++.+.-| |-|++- . ..++.+
T Consensus 36 ~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~ 115 (874)
T PRK05729 36 KPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEK 115 (874)
T ss_pred CCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHH
Confidence 333444432 4689999999887544 4566666 5777655544 444551 0 113332
Q ss_pred ----HHHHHHHHHHHHHHcCCCCC
Q psy3680 89 ----LKENIQLMAASLLACGIDPQ 108 (422)
Q Consensus 89 ----i~~~~~~i~a~~lA~Gldp~ 108 (422)
..+....+..++...|+..+
T Consensus 116 ~~~w~~~~~~~~~~~~~~lG~s~D 139 (874)
T PRK05729 116 VWEWKEESGGTITNQLRRLGASCD 139 (874)
T ss_pred HHHHHHHHHHHHHHHHHHhCccee
Confidence 23344667778888886543
No 153
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=53.86 E-value=17 Score=40.00 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=25.7
Q ss_pred CcEEEEee-cCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEe-eCceee
Q psy3680 35 PQRIFSGI-QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCI-VDLHSI 80 (422)
Q Consensus 35 ~~~i~tGi-~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilI-aD~hAl 80 (422)
+..+..|- -+||.||+||.+.-+. -++++++ .|.++.+.. -|-|++
T Consensus 24 ~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Gl 74 (601)
T PF00133_consen 24 KFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGL 74 (601)
T ss_dssp EEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SH
T ss_pred cEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCc
Confidence 34444443 4689999999887554 4666676 576654433 355555
No 154
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=53.65 E-value=18 Score=37.05 Aligned_cols=62 Identities=21% Similarity=0.154 Sum_probs=38.4
Q ss_pred CccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCc-ccccCCCCCCCcEeccC
Q psy3680 172 KATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSK-KMSKSDLDSNSKIEITD 244 (422)
Q Consensus 172 ~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~-KMSKS~~n~~s~I~L~D 244 (422)
+.-+-.+|.||..|+.-...+++.++.. .+ ......+ ...++.+- + |+ |||+..+| .|.|.|
T Consensus 239 d~~iyV~~~~q~~hf~~l~~~l~~lg~~-~~--~~~~~H~---~~g~vl~~-~-gk~~mstR~G~---~i~l~d 301 (354)
T PF00750_consen 239 DKIIYVVGADQKGHFKQLFAILEALGYD-PE--AVKLQHV---SFGVVLLK-D-GKVKMSTRKGN---VITLDD 301 (354)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHHTT-H-HH--HCTEEEE---EE-EEEET-T-BEESS-TTTTS---STBHHH
T ss_pred ccEEEEecCchhhHHHHHHHHHHHhCCC-CC--CCEEEEE---EEEEEEcC-C-CCccccCCCCC---ceEHHH
Confidence 4456779999999999999999999841 00 0111111 12333332 3 35 89999886 898855
No 155
>PLN02943 aminoacyl-tRNA ligase
Probab=46.93 E-value=21 Score=41.64 Aligned_cols=47 Identities=23% Similarity=0.208 Sum_probs=30.4
Q ss_pred CCcEEEEe-ecCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEeeCce-ee
Q psy3680 34 FPQRIFSG-IQPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIVDLH-SI 80 (422)
Q Consensus 34 ~~~~i~tG-i~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIaD~h-Al 80 (422)
++..+..| =-+||.||+||.+.-.. -++++++ .|.++.+..|=.| ++
T Consensus 88 ~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl 139 (958)
T PLN02943 88 DPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGI 139 (958)
T ss_pred CCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccc
Confidence 34555665 56799999999876443 4556666 5877766555444 44
No 156
>PLN02381 valyl-tRNA synthetase
Probab=46.71 E-value=15 Score=43.37 Aligned_cols=46 Identities=26% Similarity=0.305 Sum_probs=29.5
Q ss_pred CcEEEEee-cCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEee-Cceee
Q psy3680 35 PQRIFSGI-QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIV-DLHSI 80 (422)
Q Consensus 35 ~~~i~tGi-~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIa-D~hAl 80 (422)
+..|.+|. -+||.||+||.+.... -++++++ .|.++.+..| |-|++
T Consensus 129 ~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Gl 179 (1066)
T PLN02381 129 PFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGI 179 (1066)
T ss_pred cEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcC
Confidence 35556654 4689999999876543 4566666 5877655554 44454
No 157
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=45.42 E-value=15 Score=37.66 Aligned_cols=41 Identities=27% Similarity=0.355 Sum_probs=26.4
Q ss_pred EEeecCCCccchhhHHHHHH--HHHHHHH-cCCc--EEEEeeCcee
Q psy3680 39 FSGIQPTGTLHLGNYFGAVQ--TWSALQN-KGED--VIFCIVDLHS 79 (422)
Q Consensus 39 ~tGi~PTG~lHLGny~g~i~--~~~~lq~-~g~~--~~ilIaD~hA 79 (422)
|+.--|||.+|+||+-.++. -+.++.+ .|++ ....|+||=.
T Consensus 26 ~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~ 71 (354)
T PF00750_consen 26 FSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGT 71 (354)
T ss_dssp E---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSH
T ss_pred ecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCH
Confidence 78889999999999887765 3444444 6754 4577888754
No 158
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=44.86 E-value=84 Score=28.90 Aligned_cols=66 Identities=23% Similarity=0.232 Sum_probs=33.2
Q ss_pred ecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCce-eec--cCCCHHHHHHHHHHHHHH-HHHcCCCCCceEEEEcCC
Q psy3680 42 IQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLH-SIT--IKQKHKDLKENIQLMAAS-LLACGIDPQKSILFQQSQ 117 (422)
Q Consensus 42 i~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~h-Alt--~~~~~~~i~~~~~~i~a~-~lA~Gldp~k~~i~~qSd 117 (422)
|+| +|+||+.- ++...+ ...+++++++..+ +.. .+.+.+ ++ .+++.. +...+++.+++.+.--.|
T Consensus 9 F~P---~H~GHl~~-i~~a~~---~~d~v~v~i~s~~~~~~~~~p~~~~---~R-~~mi~~a~~~~~~~~~~~~~~pi~D 77 (174)
T PRK01153 9 FQP---FHKGHLEV-IKWILE---EVDELIIGIGSAQESHTLKNPFTAG---ER-ILMIRKALEEEGIDLSRYYIIPIPD 77 (174)
T ss_pred cCC---CCHHHHHH-HHHHHH---hCCEEEEEecCCCCCCCCCCCCCHH---HH-HHHHHHHHhcCCCCcceeeEecCCC
Confidence 566 99999763 444422 3335666675443 222 233433 22 222332 233566666666665454
Q ss_pred C
Q psy3680 118 V 118 (422)
Q Consensus 118 i 118 (422)
+
T Consensus 78 ~ 78 (174)
T PRK01153 78 I 78 (174)
T ss_pred c
Confidence 4
No 159
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=44.83 E-value=16 Score=42.64 Aligned_cols=45 Identities=18% Similarity=0.301 Sum_probs=27.5
Q ss_pred cEEEEee-cCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEee-Cceee
Q psy3680 36 QRIFSGI-QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIV-DLHSI 80 (422)
Q Consensus 36 ~~i~tGi-~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIa-D~hAl 80 (422)
..+..|. -+||.||+||.+.-+. -++++++ .|.++.+..| |-|++
T Consensus 56 f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGl 105 (961)
T PRK13804 56 FVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGL 105 (961)
T ss_pred EEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCc
Confidence 4444454 3569999999876544 4566666 5766544333 44555
No 160
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=44.74 E-value=22 Score=38.80 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=28.2
Q ss_pred EEeecCCCccchhhHHHHHH--HHHHHHH-cCCcE--EEEeeCce
Q psy3680 39 FSGIQPTGTLHLGNYFGAVQ--TWSALQN-KGEDV--IFCIVDLH 78 (422)
Q Consensus 39 ~tGi~PTG~lHLGny~g~i~--~~~~lq~-~g~~~--~ilIaD~h 78 (422)
|+.--|||.+|+||.-+++. -+.++-+ .|++| .+.|+||=
T Consensus 119 ~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G 163 (562)
T PRK12451 119 YSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWG 163 (562)
T ss_pred ecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCch
Confidence 88889999999999887765 3444444 67654 45556654
No 161
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=44.36 E-value=15 Score=42.74 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=28.7
Q ss_pred CCcEEEEee-cCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEee-Cceee
Q psy3680 34 FPQRIFSGI-QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIV-DLHSI 80 (422)
Q Consensus 34 ~~~~i~tGi-~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIa-D~hAl 80 (422)
++..++.|. -+||.||+||.+.-.. -+.++++ .|.++.+..| |-|++
T Consensus 41 ~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~Gl 92 (975)
T PRK06039 41 PEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGL 92 (975)
T ss_pred CCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCcc
Confidence 345666665 4679999999876433 4556666 5765544333 44454
No 162
>PLN02286 arginine-tRNA ligase
Probab=43.56 E-value=19 Score=39.46 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=28.1
Q ss_pred EEeecCCCccchhhHHHHHH--HHHHHHH-cCCcE--EEEeeCce
Q psy3680 39 FSGIQPTGTLHLGNYFGAVQ--TWSALQN-KGEDV--IFCIVDLH 78 (422)
Q Consensus 39 ~tGi~PTG~lHLGny~g~i~--~~~~lq~-~g~~~--~ilIaD~h 78 (422)
|+.--|||.+|+||.-+++. -+.++.+ .|++| ..-|+||=
T Consensus 123 fsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G 167 (576)
T PLN02286 123 FSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWG 167 (576)
T ss_pred ecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchH
Confidence 88899999999999877765 3444444 67654 45566654
No 163
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=41.47 E-value=98 Score=33.57 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=36.4
Q ss_pred cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccC
Q psy3680 171 YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKS 232 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS 232 (422)
.++|....|.--.|-+.+-|.+++-+|- |.-++ ..|++-.- | |=-||+-
T Consensus 140 v~P~~a~fGeKD~QQl~vir~mv~dL~~--------~v~i~---~~ptvRe~-d-GLA~SSR 188 (512)
T PRK13477 140 VQPKRAYFGEKDWQQLAIIRRLVADLNL--------PVTIV---GCPTVREA-D-GLALSSR 188 (512)
T ss_pred cCCCeeeecccHHHHHHHHHHHHHHcCC--------CceEE---ecCceECC-C-Cchhhhh
Confidence 3899999999999999999999999882 44454 35555553 3 3567765
No 164
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=39.41 E-value=20 Score=41.48 Aligned_cols=74 Identities=15% Similarity=0.289 Sum_probs=43.5
Q ss_pred cEEEEee-cCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEee-Cceeec------c-------CCCHHHHHHH-----
Q psy3680 36 QRIFSGI-QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIV-DLHSIT------I-------KQKHKDLKEN----- 92 (422)
Q Consensus 36 ~~i~tGi-~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIa-D~hAlt------~-------~~~~~~i~~~----- 92 (422)
..+..|. -+||.+|+||.+.-+. -++++++ .|.++.+..| |-|++- . ..+++++++.
T Consensus 51 f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~ 130 (912)
T PRK05743 51 FILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYA 130 (912)
T ss_pred EEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHH
Confidence 4444443 3579999999887544 4666776 5766544333 444542 1 1255554433
Q ss_pred ---HHHHHHHHHHcCC--CCCc
Q psy3680 93 ---IQLMAASLLACGI--DPQK 109 (422)
Q Consensus 93 ---~~~i~a~~lA~Gl--dp~k 109 (422)
...+..++...|+ |-++
T Consensus 131 ~~~~~~~~~~~~~lG~~~dw~~ 152 (912)
T PRK05743 131 LEQVDIQREDFKRLGVLGDWDN 152 (912)
T ss_pred HHHHHHHHHHHHHhCCcccCCC
Confidence 3455667778898 6554
No 165
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=35.60 E-value=16 Score=36.39 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=29.9
Q ss_pred cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccC
Q psy3680 171 YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKS 232 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS 232 (422)
.++|....|+--+|-+.+.|.+++.+|- |..++ ..|++-.- | |=-||+-
T Consensus 140 v~P~~ayfGeKD~QQl~iIr~mv~Dl~~--------~v~I~---~~ptvRe~-d-GLAlSSR 188 (280)
T PF02569_consen 140 VQPDRAYFGEKDYQQLAIIRRMVRDLNL--------PVEIV---GCPTVREP-D-GLALSSR 188 (280)
T ss_dssp H--SEEEEETTSHHHHHHHHHHHHHTT---------SSEEE---EE---B-T-T-S-B--GG
T ss_pred hCCCEEEEechHHHHHHHHHHHHHHhCC--------CCEEE---EeCCeECC-C-CCceeec
Confidence 4899999999999999999999999872 44444 25555443 3 3567765
No 166
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=35.40 E-value=27 Score=40.14 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=29.7
Q ss_pred CCCcEEEEee-cCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEee-Cceee
Q psy3680 33 SFPQRIFSGI-QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIV-DLHSI 80 (422)
Q Consensus 33 ~~~~~i~tGi-~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIa-D~hAl 80 (422)
+++..++.|. -|||.||+||.+.-+. -+.++++ .|.++.+..| |-|++
T Consensus 35 ~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl 87 (861)
T TIGR00392 35 KPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGL 87 (861)
T ss_pred CCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCcc
Confidence 3445667776 3458999999876443 4666777 5766544333 44454
No 167
>KOG1148|consensus
Probab=34.32 E-value=64 Score=35.51 Aligned_cols=93 Identities=18% Similarity=0.315 Sum_probs=49.2
Q ss_pred EEEEee--cCCCccchhhHHHHHH-HHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHH-HHHHHHHHHHcCCCCCceEE
Q psy3680 37 RIFSGI--QPTGTLHLGNYFGAVQ-TWSALQNKGEDVIFCIVDLHSITIKQKHKDLKEN-IQLMAASLLACGIDPQKSIL 112 (422)
Q Consensus 37 ~i~tGi--~PTG~lHLGny~g~i~-~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~-~~~i~a~~lA~Gldp~k~~i 112 (422)
+|+|-| +|.|.+||||.- ||. ++--....|.-| ++== |..+|+.=++. -..|..+..-.|+.|-|++
T Consensus 248 kV~TRFPPEPNG~LHIGHaK-AInvNFgyAk~~~G~c-yLRf------DDTNPEkEee~yf~sI~e~V~WLG~~P~kvT- 318 (764)
T KOG1148|consen 248 KVVTRFPPEPNGILHIGHAK-AINVNFGYAKAHGGVC-YLRF------DDTNPEKEEEEYFESIKEMVAWLGFEPYKVT- 318 (764)
T ss_pred eeEEeCCCCCCceeeecchh-heeechhhhhhhCCeE-EEec------CCCCcchhhHHHHHHHHHHHHHhCCCceeee-
Confidence 455555 677999999965 332 221112222112 2222 22344433222 2222222223699998765
Q ss_pred EEcCCC-cchhHHHHHH-------hhccchhhhhc
Q psy3680 113 FQQSQV-PEHTQLAWVL-------TCLCTVNRLNH 139 (422)
Q Consensus 113 ~~qSdi-~e~~el~w~l-------~~~~~~~~l~r 139 (422)
..||+ .+.+++...| .|+.+..++.+
T Consensus 319 -ysSDyFdqLy~~av~LIrkG~AYVcHqt~eEik~ 352 (764)
T KOG1148|consen 319 -YSSDYFDQLYELAVELIRKGKAYVCHQTAEEIKE 352 (764)
T ss_pred -cchhHHHHHHHHHHHHHhcCceeEEeccHHHHHh
Confidence 56774 4556665543 58888888873
No 168
>KOG0436|consensus
Probab=33.84 E-value=1.3e+02 Score=31.94 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=43.2
Q ss_pred ecCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEe--eCceeec-------cCCCHHH-HHHHHHHHHHHHHHcCCCCC
Q psy3680 42 IQPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCI--VDLHSIT-------IKQKHKD-LKENIQLMAASLLACGIDPQ 108 (422)
Q Consensus 42 i~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilI--aD~hAlt-------~~~~~~~-i~~~~~~i~a~~lA~Gldp~ 108 (422)
+-+.+.|||||+..++. ...++|+ .|. .++|. .|-|.+- ...+|.+ ..++..+....|.+.|+.-.
T Consensus 48 fYvNAaPHlGhlYS~llaDai~R~q~lkg~-~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~gi~yt 126 (578)
T KOG0436|consen 48 FYVNAAPHLGHLYSTLLADAIARFQRLKGK-KVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDAGIAYT 126 (578)
T ss_pred eecCCCcchhHHHHHHHHHHHHHHHhhcCC-ceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhCcchh
Confidence 45778999999877665 4666787 564 45554 4677763 2234444 45566777777888888643
No 169
>COG4320 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.12 E-value=59 Score=33.24 Aligned_cols=53 Identities=40% Similarity=0.587 Sum_probs=32.7
Q ss_pred ccchhHHHHHhhhhcccchhhhhhhhccccCCCcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCce
Q psy3680 3 RFKAHLLLTHMKKFVNSSGQQIRHYSDHKISFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLH 78 (422)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~h 78 (422)
|=|+||.+.-+++---+- .+.|..-++ |..||||| |+.++. .| .++|-|+|..
T Consensus 36 RGtahLfy~~~~~~p~~l-----------p~~p~tw~c-----GD~HLgN~-ga~~~~-----~G-~V~f~i~DFD 88 (410)
T COG4320 36 RGTAHLFYQDMKTWPWSL-----------PKTPFTWLC-----GDAHLGNF-GAARNS-----KG-NVVFKIADFD 88 (410)
T ss_pred ecchHHHHHHHhcCcccc-----------CCCCceEEe-----cccccccc-hhhccC-----CC-ceEEEecccc
Confidence 556777776666543111 223333333 68999997 454433 45 6999999987
No 170
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=32.64 E-value=1.3e+02 Score=28.38 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=41.6
Q ss_pred EEEEe-ecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeec---cCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q psy3680 37 RIFSG-IQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSIT---IKQKHKDLKENIQLMAASLLACGIDPQKSIL 112 (422)
Q Consensus 37 ~i~tG-i~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt---~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i 112 (422)
.+|.| ||| +|+||.- +|+.. +.+. .+++|.|+-...-. +|.+..+-...+ ...+. ..|..++.+
T Consensus 7 ~v~iGRFQP---fH~GHl~-~I~~a--l~~~-devII~IGSA~~s~t~~NPFTa~ER~~MI---~~aL~--e~~~~rv~~ 74 (196)
T PRK13793 7 LVFIGRFQP---FHLAHMQ-TIEIA--LQQS-RYVILALGSAQMERNIKNPFLAIEREQMI---LSNFS--LDEQKRIRF 74 (196)
T ss_pred EEEEecCCC---CcHHHHH-HHHHH--HHhC-CEEEEEEccCCCCCCCCCCCCHHHHHHHH---HHhcc--hhhcceEEE
Confidence 45555 688 8999975 35444 3443 37899998866333 344444333322 22221 124557776
Q ss_pred EEcCCCcchhHHHHH
Q psy3680 113 FQQSQVPEHTQLAWV 127 (422)
Q Consensus 113 ~~qSdi~e~~el~w~ 127 (422)
.--.|+ ..+..|.
T Consensus 75 ipi~D~--~~~~~Wv 87 (196)
T PRK13793 75 VHVVDV--YNDEKWV 87 (196)
T ss_pred EecCCc--cchhHHH
Confidence 655554 3344563
No 171
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=32.58 E-value=1.6e+02 Score=25.49 Aligned_cols=71 Identities=14% Similarity=0.161 Sum_probs=45.0
Q ss_pred EeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeec-cCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCC
Q psy3680 40 SGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSIT-IKQKHKDLKENIQLMAASLLACGIDPQKSILFQQSQ 117 (422)
Q Consensus 40 tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt-~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSd 117 (422)
.-+-=||++..-+.+- .-+.|.+-+++++.-..== -..-....+++.......+...|++|+++.+++-|.
T Consensus 32 IrvpC~Grv~~~~il~-------Af~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~~~ 103 (124)
T PF02662_consen 32 IRVPCSGRVDPEFILR-------AFEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGIEPERVRLYWISA 103 (124)
T ss_pred EEccCCCccCHHHHHH-------HHHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhHeEEEEeCc
Confidence 3444567777666433 2335888877777653110 011234566677777888888999999999887664
No 172
>KOG0437|consensus
Probab=31.73 E-value=87 Score=35.55 Aligned_cols=10 Identities=60% Similarity=0.544 Sum_probs=8.8
Q ss_pred CcccccCCCC
Q psy3680 226 SKKMSKSDLD 235 (422)
Q Consensus 226 ~~KMSKS~~n 235 (422)
++|||||.+|
T Consensus 708 sEKMSKSTGN 717 (1080)
T KOG0437|consen 708 SEKMSKSTGN 717 (1080)
T ss_pred chhhccccCC
Confidence 4799999988
No 173
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=31.16 E-value=2.5e+02 Score=28.52 Aligned_cols=71 Identities=20% Similarity=0.242 Sum_probs=40.0
Q ss_pred cEEEEe-ecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCce-eec--cCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q psy3680 36 QRIFSG-IQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLH-SIT--IKQKHKDLKENIQLMAASLLACGIDPQKSI 111 (422)
Q Consensus 36 ~~i~tG-i~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~h-Alt--~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~ 111 (422)
..+|.| |+| +|+||+.- ++... . ...++++.++..+ +.. ++.+.++-.+. +...++ +++..++.
T Consensus 8 ~~~~~G~F~P---~H~GHl~~-i~~a~--~-~~d~l~v~i~s~~~~~~~~~~~~~~~R~~m----i~~~~~-~~~~~r~~ 75 (340)
T PRK05379 8 YLVFIGRFQP---FHNGHLAV-IREAL--S-RAKKVIVLIGSADLARSIKNPFSFEERAQM----IRAALA-GIDLARVT 75 (340)
T ss_pred EEEEeeccCC---CCHHHHHH-HHHHH--H-HCCEEEEEEccCCCCCcCCCCCCHHHHHHH----HHHHhh-cCCCceEE
Confidence 345555 677 89999763 44442 2 2357888886432 222 34444443333 333333 78888888
Q ss_pred EEEcCCC
Q psy3680 112 LFQQSQV 118 (422)
Q Consensus 112 i~~qSdi 118 (422)
|.-=.|+
T Consensus 76 ~~pi~d~ 82 (340)
T PRK05379 76 IRPLRDS 82 (340)
T ss_pred EEECCCC
Confidence 8765553
No 174
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=30.79 E-value=84 Score=23.23 Aligned_cols=37 Identities=22% Similarity=0.373 Sum_probs=25.1
Q ss_pred CcchhhHHHHHHhcCCCCHHHHHHHHhCCChhHHHHHHH
Q psy3680 271 RPAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLA 309 (422)
Q Consensus 271 ~p~~~~l~~~~~~~t~~~~eei~~~~~~~~~~dlK~~La 309 (422)
|..+..++..+ -.+.+.+|+.++|.+++..+++.+|+
T Consensus 18 RI~v~~i~~~~--~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 18 RIPVRDILDLL--AAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp S-BHHHHHHHH--HTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred eecHHHHHHHH--HcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 44455666655 47899999999999999999998875
No 175
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=30.08 E-value=30 Score=40.17 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=23.6
Q ss_pred cEEEEee-cCCCccchhhHHHHHH--HHHHHHH-cCCcEEE
Q psy3680 36 QRIFSGI-QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIF 72 (422)
Q Consensus 36 ~~i~tGi-~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~i 72 (422)
..|.+|. -+||.||+||.++... -+.++++ .|.++.+
T Consensus 27 f~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~ 67 (938)
T TIGR00395 27 FFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLF 67 (938)
T ss_pred eEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCC
Confidence 3444433 3579999999877544 4666777 5766543
No 176
>KOG0432|consensus
Probab=29.46 E-value=48 Score=38.05 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=25.2
Q ss_pred CCccchhhHHHHHH--HHHHHHH-cCCcEEEEeeCceee
Q psy3680 45 TGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIVDLHSI 80 (422)
Q Consensus 45 TG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIaD~hAl 80 (422)
||++||||.+.+-. .+.++.+ .|.++-+.-+=.||=
T Consensus 87 TG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAG 125 (995)
T KOG0432|consen 87 TGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAG 125 (995)
T ss_pred ccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccc
Confidence 89999999876432 3455555 577777777777864
No 177
>KOG0433|consensus
Probab=29.31 E-value=51 Score=37.19 Aligned_cols=60 Identities=23% Similarity=0.262 Sum_probs=34.6
Q ss_pred CccEEeecCchhHH----HHHHHHHHHHhccccCccCCCC-eecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCH
Q psy3680 172 KATHIPAGLDQIHN----INLANHLTQLFNNKFDKIFPIP-QLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPP 246 (422)
Q Consensus 172 ~a~~vpvG~DQ~~h----ielaRdia~r~n~~~g~~f~~P-~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp 246 (422)
-+|+..=|.||..- .-|+- +|-+ |+ .| ..++ .+.+.-+ ..|.|||||.+| .| +|
T Consensus 566 ~aDv~LEG~DQ~rGWFQSsLLTs-vA~q-~k-------APYk~vi---vHGFtlD--E~G~KMSKSlGN---Vi----dP 624 (937)
T KOG0433|consen 566 VADVYLEGVDQFRGWFQSSLLTS-VAVQ-NK-------APYKKVI---VHGFTLD--ENGNKMSKSLGN---VV----DP 624 (937)
T ss_pred ceeeEEecchhcchHHHHHHHHH-HHHh-cc-------CCchhee---eeeeEec--CCccchhhcccC---cC----CH
Confidence 38999999999632 23333 3332 21 23 2233 2444433 446899999998 44 55
Q ss_pred HHHHHH
Q psy3680 247 EVIVRK 252 (422)
Q Consensus 247 ~~I~kK 252 (422)
+.|.+.
T Consensus 625 ~~v~~G 630 (937)
T KOG0433|consen 625 TMVTDG 630 (937)
T ss_pred HHHhCC
Confidence 666554
No 178
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=29.07 E-value=41 Score=40.22 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=28.1
Q ss_pred cEEEEee-cCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEee-Cceee
Q psy3680 36 QRIFSGI-QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIV-DLHSI 80 (422)
Q Consensus 36 ~~i~tGi-~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIa-D~hAl 80 (422)
..++.|- -+||.||+||.+.-.. -+.++++ .|+++.+..| |-|++
T Consensus 104 Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGl 153 (1205)
T PTZ00427 104 YIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGL 153 (1205)
T ss_pred EEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCc
Confidence 4556664 4679999999876433 3556666 5876654443 44555
No 179
>KOG0435|consensus
Probab=28.04 E-value=2.2e+02 Score=32.21 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=29.2
Q ss_pred cccccCCCCCCCcEeccC-----CHHHHHHHhhhhccCCCCccccCCCCCcchhhHH
Q psy3680 227 KKMSKSDLDSNSKIEITD-----PPEVIVRKCKKALTDCTSAVTYDPENRPAVSNLI 278 (422)
Q Consensus 227 ~KMSKS~~n~~s~I~L~D-----sp~~I~kKI~~A~tD~~~~~~~~p~~~p~~~~l~ 278 (422)
+|||||..| -+...| .++.++-.|.-+. .+...+..+...=||+.+++
T Consensus 616 eKMSKSK~N---GVdP~~~v~~yG~D~tRl~ilf~a-p~~~~~nW~es~i~Gi~rwl 668 (876)
T KOG0435|consen 616 EKMSKSKHN---GVDPADVVLEYGVDTTRLYILFAA-PPRDPINWNESAIPGIKRWL 668 (876)
T ss_pred HHhhhcccC---CCCHHHHHHHhCchHHHHHHHhhC-CcccccccccccchhHHHHH
Confidence 699999887 554443 5677888887752 23333444544445665554
No 180
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=27.22 E-value=3.2e+02 Score=26.57 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=43.9
Q ss_pred EEEEeecCCCccchhh-------HHHHHHHHHHHHHcCCcEEEEeeCce--eecc-CCCHHHHHHHHHHHHHHHHHcCCC
Q psy3680 37 RIFSGIQPTGTLHLGN-------YFGAVQTWSALQNKGEDVIFCIVDLH--SITI-KQKHKDLKENIQLMAASLLACGID 106 (422)
Q Consensus 37 ~i~tGi~PTG~lHLGn-------y~g~i~~~~~lq~~g~~~~ilIaD~h--Alt~-~~~~~~i~~~~~~i~a~~lA~Gld 106 (422)
..+.++.++|.+|+.. +.........+|..|.++.+-|+++. .+.. ..+.+..++....+...+...|+|
T Consensus 35 ~af~~i~~~G~l~~~d~~~~~~~~~~~~~~i~~~~~~g~KVllSiGG~~~~~fs~~a~~~~~r~~f~~s~~~~~~~~~~D 114 (256)
T cd06546 35 VAALHINDDGNIHLNDHPPDHPRFTTLWTELAILQSSGVKVMGMLGGAAPGSFSRLDDDDEDFERYYGQLRDMIRRRGLD 114 (256)
T ss_pred EEEEEECCCCeEEECCCCCCcchhhHHHHHHHHHHhCCCEEEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 3467889999887753 22333345567888999999999985 2322 235555555555555555566665
No 181
>PLN02882 aminoacyl-tRNA ligase
Probab=26.45 E-value=47 Score=39.63 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=28.9
Q ss_pred CcEEEEee-cCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEee-Cceee
Q psy3680 35 PQRIFSGI-QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIV-DLHSI 80 (422)
Q Consensus 35 ~~~i~tGi-~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIa-D~hAl 80 (422)
+..++.|- -+||.||+||.+.-+. -+.++++ .|+++.+..| |-|++
T Consensus 39 ~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGl 89 (1159)
T PLN02882 39 EYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGL 89 (1159)
T ss_pred CEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCc
Confidence 35566664 4679999999876443 3556666 5766544333 55555
No 182
>PLN02959 aminoacyl-tRNA ligase
Probab=26.44 E-value=42 Score=39.67 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=24.1
Q ss_pred CCCccchhhHHHHHH--HHHHHHH-cCCcEEEEeeCcee
Q psy3680 44 PTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIVDLHS 79 (422)
Q Consensus 44 PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIaD~hA 79 (422)
++|.|||||.+.... -.+++|+ .|.+ +.+.-++|.
T Consensus 56 ~NG~lHiGHa~t~t~~D~i~Rykrm~G~~-vlfp~G~d~ 93 (1084)
T PLN02959 56 MNGLLHLGHAFSLSKLEFAAAYHRLRGAN-VLLPFAFHC 93 (1084)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHcCCCc-cCCCCCcCC
Confidence 479999999887554 4667777 5654 455556663
No 183
>PF08712 Nfu_N: Scaffold protein Nfu/NifU N terminal; InterPro: IPR014824 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This domain is found at the N terminus of NifU (from NIF system) and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the assembly of iron-sulphur clusters, functioning as scaffolds [, ]. ; GO: 0005506 iron ion binding; PDB: 2FFM_A 1PQX_A 2K1H_A.
Probab=25.54 E-value=1e+02 Score=25.09 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=28.9
Q ss_pred HHcCCcEEEEeeCceeecc--CCCHHHHHHHHHHHHHHHHHcC
Q psy3680 64 QNKGEDVIFCIVDLHSITI--KQKHKDLKENIQLMAASLLACG 104 (422)
Q Consensus 64 q~~g~~~~ilIaD~hAlt~--~~~~~~i~~~~~~i~a~~lA~G 104 (422)
+-.|++.+++.+|+=++++ ..+|+.|+..+......+++.|
T Consensus 45 ~i~gV~~Vf~~~dfItVtK~~~~~W~~l~~~I~~~I~~~l~sG 87 (87)
T PF08712_consen 45 AIPGVKSVFIGDDFITVTKNPDADWEDLKPEIREVIMEFLESG 87 (87)
T ss_dssp TSTTEEEEEEETTEEEEEE-TTS-HHHHHHHHHHHTH------
T ss_pred CCCCEeEEEEECCEEEEeeCCCCCHHHHHHHHHHHHhhhccCC
Confidence 3368999999999999993 4699999999988888887765
No 184
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=24.92 E-value=16 Score=29.70 Aligned_cols=20 Identities=50% Similarity=1.057 Sum_probs=14.2
Q ss_pred chhhhhhhhhhcccccCCCC
Q psy3680 399 QVPIWGLLKWMGYFSCPTDG 418 (422)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~ 418 (422)
.||+-|+-.-|.||-||..|
T Consensus 53 ~vpilGvVENMs~~~Cp~Cg 72 (81)
T PF10609_consen 53 NVPILGVVENMSYFVCPHCG 72 (81)
T ss_dssp T-EEEEEEECT-EEE-TTT-
T ss_pred CCCcEEEEECCCccCCCCCC
Confidence 38999999999999999865
No 185
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=23.97 E-value=2.5e+02 Score=31.46 Aligned_cols=75 Identities=19% Similarity=0.211 Sum_probs=45.2
Q ss_pred CCcEE-EEeecCCCccchhhHHHHHH--HHHHHHH--cCCcEEEEeeCceeecc---------CCC-HHHH-HHHHHHHH
Q psy3680 34 FPQRI-FSGIQPTGTLHLGNYFGAVQ--TWSALQN--KGEDVIFCIVDLHSITI---------KQK-HKDL-KENIQLMA 97 (422)
Q Consensus 34 ~~~~i-~tGi~PTG~lHLGny~g~i~--~~~~lq~--~g~~~~ilIaD~hAlt~---------~~~-~~~i-~~~~~~i~ 97 (422)
..+++ .||-.+-+.+||||....+. -+.++.+ .|++|.+ +-+.+-.=+ ..+ +.++ +.......
T Consensus 59 ~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~-v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~ 137 (651)
T PTZ00399 59 RQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFY-VMNITDIDDKIIKRAREEKLSIFLELARKWEKEFF 137 (651)
T ss_pred CeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEE-EeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 33443 56777778999999766443 3444444 5776544 444443321 234 5555 45567788
Q ss_pred HHHHHcCCCCCc
Q psy3680 98 ASLLACGIDPQK 109 (422)
Q Consensus 98 a~~lA~Gldp~k 109 (422)
.++.++|+.|..
T Consensus 138 ~d~~~Lni~~p~ 149 (651)
T PTZ00399 138 EDMKALNVRPPD 149 (651)
T ss_pred HHHHHcCCCCCc
Confidence 888899987653
No 186
>KOG0436|consensus
Probab=22.82 E-value=48 Score=35.11 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=15.0
Q ss_pred ecCCCccchhhHHHHHHHHHHHHHcC
Q psy3680 42 IQPTGTLHLGNYFGAVQTWSALQNKG 67 (422)
Q Consensus 42 i~PTG~lHLGny~g~i~~~~~lq~~g 67 (422)
|++|-.=|..+ ++..|...+..|
T Consensus 129 IRTTdpkH~a~---Vqefw~~~~knG 151 (578)
T KOG0436|consen 129 IRTTDPKHEAI---VQEFWARVFKNG 151 (578)
T ss_pred eecCCchHHHH---HHHHHHHHHhCC
Confidence 45666667666 345677777776
No 187
>KOG0744|consensus
Probab=22.75 E-value=8.9e+02 Score=25.28 Aligned_cols=152 Identities=18% Similarity=0.181 Sum_probs=78.4
Q ss_pred HHHhhhhcccchhhhhhhhcc-----ccCCCc----------------EEEEeecCCCccchhhHHHHHHHHHHHHHcCC
Q psy3680 10 LTHMKKFVNSSGQQIRHYSDH-----KISFPQ----------------RIFSGIQPTGTLHLGNYFGAVQTWSALQNKGE 68 (422)
Q Consensus 10 ~~~~~~~~~~~~~~i~~~~~~-----~~~~~~----------------~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~ 68 (422)
|.-|++.|.|||+.+..+++. +.+... ..-+|-+||-.+-.=|.+ +.++=++.+ ..
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNal--LTQlDrlK~-~~ 296 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNAL--LTQLDRLKR-YP 296 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHH--HHHHHHhcc-CC
Confidence 456899999999655443321 122221 235678888877766644 233433333 34
Q ss_pred cEEEEe---------------eCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc-CC-Ccch-----hHHHH
Q psy3680 69 DVIFCI---------------VDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQQ-SQ-VPEH-----TQLAW 126 (422)
Q Consensus 69 ~~~ilI---------------aD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~q-Sd-i~e~-----~el~w 126 (422)
+++++- ||.-.++.+-+...+.+..+...+.+..+|+ +++.| |+ |++. ....|
T Consensus 297 NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~gI-----i~~~~~s~~~~~~i~~~~~~~~~ 371 (423)
T KOG0744|consen 297 NVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISSGI-----ILFHQRSTGVKEFIKYQKALRNI 371 (423)
T ss_pred CEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhcCe-----eeeeccchhhhHHhHhhHhHHHH
Confidence 444442 2222222222334444545556666677786 44444 66 4442 22344
Q ss_pred HHhhc--cchhhhhcchhHHHHhhhc--CCCCccchhhHHHhhhhhh
Q psy3680 127 VLTCL--CTVNRLNHMPTYVEKCAEL--KQSPTGLFLYPVLQAADIL 169 (422)
Q Consensus 127 ~l~~~--~~~~~l~r~~~~K~k~~~~--~~~~~gl~~YPvLqAaDil 169 (422)
+.-|. -=-||..|+-.+.+-..-. -.+++..|+--+++|++-.
T Consensus 372 ~~~~~~~gLSGRtlrkLP~Laha~y~~~~~v~~~~fl~al~ea~~k~ 418 (423)
T KOG0744|consen 372 LIELSTVGLSGRTLRKLPLLAHAEYFRTFTVDLSNFLLALLEAAKKL 418 (423)
T ss_pred HHHHhhcCCccchHhhhhHHHHHhccCCCccChHHHHHHHHHHHHHH
Confidence 43222 1124555554444322222 3577888888888888643
No 188
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=21.65 E-value=1.6e+02 Score=27.24 Aligned_cols=71 Identities=24% Similarity=0.386 Sum_probs=38.8
Q ss_pred cEEEEe-ecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCce-eec--cCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q psy3680 36 QRIFSG-IQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLH-SIT--IKQKHKDLKENIQLMAASLLACGIDPQKSI 111 (422)
Q Consensus 36 ~~i~tG-i~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~h-Alt--~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~ 111 (422)
.-+|.| ||| +|.||.- +|+.. |.+. .+++|+|+-.. +.+ +|.+. -+...-+.+.+.-.|+|+ ++.
T Consensus 5 rgv~~GRFqP---~H~GHl~-vi~~a--l~~v-DeliI~iGSa~~~~t~~nPfTa---gER~~mi~~~L~~~~~~~-r~~ 73 (172)
T COG1056 5 RGVYFGRFQP---LHTGHLY-VIKRA--LSKV-DELIIVIGSAQESHTLKNPFTA---GERIPMIRDRLREAGLDL-RVY 73 (172)
T ss_pred EEEEEeccCC---ccHhHHH-HHHHH--HHhC-CEEEEEEccCcccccccCCCCc---cchhHHHHHHHHhcCCCc-eEE
Confidence 345555 566 9999976 35433 4444 36666666544 333 33332 223333344455689988 776
Q ss_pred EEEcCC
Q psy3680 112 LFQQSQ 117 (422)
Q Consensus 112 i~~qSd 117 (422)
+..=-|
T Consensus 74 ~~~v~d 79 (172)
T COG1056 74 LRPVFD 79 (172)
T ss_pred EEecCc
Confidence 654333
No 189
>PHA01929 putative scaffolding protein
Probab=21.03 E-value=4.4e+02 Score=26.22 Aligned_cols=48 Identities=13% Similarity=0.168 Sum_probs=27.9
Q ss_pred CCCcchhhHHHHHHhcCCCCHHHHHHHHhC---------CChhHHHHHHHHHHHhhc
Q psy3680 269 ENRPAVSNLITLHALCTNQLPQDICTQVKH---------LNTGQYKLLLADVLVEKF 316 (422)
Q Consensus 269 ~~~p~~~~l~~~~~~~t~~~~eei~~~~~~---------~~~~dlK~~Lae~i~~~l 316 (422)
..+|.+..-+.|+..|++..--++++-|.+ +...-||+.|.|.=-..+
T Consensus 116 ~gDp~laasv~~L~~~sg~~dlD~~RAfGKA~E~~DprfIDe~yL~E~LGe~~A~~~ 172 (306)
T PHA01929 116 EGDPQLAPSVSYLEAFSGLDKLDTVRAFGKAAENRDPRFIDTHYLKEVLGEAQAQHV 172 (306)
T ss_pred cCCcccchHHHHHHHHhcCcchHHHHHHHHHhhccCchhhHHHHHHHHHhHHHHHHH
Confidence 345556666778888877766677776642 333345555555433333
No 190
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=20.69 E-value=2.9e+02 Score=27.70 Aligned_cols=96 Identities=20% Similarity=0.223 Sum_probs=65.4
Q ss_pred HHhhhhcccchhhhhhhhccccCCCcEEEEeecCCCccchhhHHHHHHHHHHHHHcC-CcEEEEeeCceeec-cCCCHHH
Q psy3680 11 THMKKFVNSSGQQIRHYSDHKISFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKG-EDVIFCIVDLHSIT-IKQKHKD 88 (422)
Q Consensus 11 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g-~~~~ilIaD~hAlt-~~~~~~~ 88 (422)
.|+=|.+-++--.++++..+.+..+++|+.||=||-.+|=+---.++... ++..| .++..++++-.++- ...+.+.
T Consensus 76 t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~~~~til~ay--~~~~~~d~v~~v~VGnEal~r~~~tasq 153 (305)
T COG5309 76 THSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHDAVEKTILSAY--LPYNGWDDVTTVTVGNEALNRNDLTASQ 153 (305)
T ss_pred CceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhhhHHHHHHHHH--hccCCCCceEEEEechhhhhcCCCCHHH
Confidence 33445555444477777766777789999999999999965432211111 22233 35667777778777 4568888
Q ss_pred HHHHHHHHHHHHHHcCCCCC
Q psy3680 89 LKENIQLMAASLLACGIDPQ 108 (422)
Q Consensus 89 i~~~~~~i~a~~lA~Gldp~ 108 (422)
+-+.+......+...|.|-.
T Consensus 154 l~~~I~~vrsav~~agy~gp 173 (305)
T COG5309 154 LIEYIDDVRSAVKEAGYDGP 173 (305)
T ss_pred HHHHHHHHHHHHHhcCCCCc
Confidence 98888888888888898754
No 191
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=20.61 E-value=2.2e+02 Score=25.23 Aligned_cols=48 Identities=27% Similarity=0.297 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHhhcCcHHHHHHHHhcCHHHHHHHHHhhHHHHHHHHHHHHH
Q psy3680 302 GQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVLLDGSIRAQAIAVETWD 353 (422)
Q Consensus 302 ~dlK~~Lae~i~~~l~pir~~~~~l~~~~~~l~~iL~~Ga~kAr~iA~~tl~ 353 (422)
+.+|..+=++|.+.+.|.=. -..+.++..+++.+.....+++|+++|+
T Consensus 19 Q~lKl~VRD~Vl~~l~~~~~----~~~~~~ea~~~i~~~~~~Ie~~A~~~l~ 66 (130)
T PF09551_consen 19 QALKLKVRDAVLEYLSPWLS----QAKSKEEAREVIRENLPEIEQIAEEVLA 66 (130)
T ss_pred HHHHHHHHHHHHHHHHHHhc----cCCCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 46899988888888887422 1246667777777777777888887775
Done!