Query psy3680
Match_columns 422
No_of_seqs 219 out of 1746
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 22:51:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3680.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3680hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3prh_A Tryptophanyl-tRNA synth 100.0 1.6E-93 5.6E-98 726.0 30.7 349 14-365 8-362 (388)
2 3sz3_A Tryptophanyl-tRNA synth 100.0 3.2E-91 1.1E-95 700.4 28.2 326 35-362 6-338 (341)
3 3n9i_A Tryptophanyl-tRNA synth 100.0 8E-91 2.7E-95 697.9 30.3 329 32-362 12-343 (346)
4 1i6k_A TRPRS, tryptophanyl-tRN 100.0 8.5E-89 2.9E-93 680.9 31.7 324 36-362 2-325 (328)
5 3tzl_A Tryptophanyl-tRNA synth 100.0 1.6E-88 5.5E-93 677.2 29.3 317 35-361 3-322 (322)
6 2yy5_A Tryptophanyl-tRNA synth 100.0 7.7E-89 2.6E-93 686.0 26.9 325 34-362 3-343 (348)
7 2el7_A Tryptophanyl-tRNA synth 100.0 5.2E-87 1.8E-91 670.3 30.7 323 36-364 2-330 (337)
8 2g36_A Tryptophanyl-tRNA synth 100.0 8.6E-87 2.9E-91 669.2 28.8 322 33-362 10-339 (340)
9 1yi8_B Tryptophanyl-tRNA synth 100.0 9.6E-85 3.3E-89 656.9 30.9 322 33-362 20-349 (351)
10 3jxe_A Tryptophanyl-tRNA synth 100.0 4E-73 1.4E-77 578.0 20.6 318 3-343 40-371 (392)
11 3vgj_A Tyrosyl-tRNA synthetase 100.0 2.4E-69 8.3E-74 548.2 21.7 297 21-336 44-366 (373)
12 2cyc_A Tyrosyl-tRNA synthetase 100.0 9.7E-70 3.3E-74 551.9 18.5 285 22-326 22-361 (375)
13 2cya_A Tyrosyl-tRNA synthetase 100.0 5.9E-69 2E-73 544.4 22.9 297 4-325 4-347 (364)
14 3a04_A Tryptophanyl-tRNA synth 100.0 3E-69 1E-73 547.6 18.1 312 3-337 37-367 (372)
15 2j5b_A Tyrosyl-tRNA synthetase 100.0 1.8E-68 6.1E-73 538.0 21.5 291 10-326 15-331 (348)
16 2ip1_A Tryptophanyl-tRNA synth 100.0 6.1E-70 2.1E-74 561.5 5.6 335 3-356 69-432 (432)
17 3p0j_A Tyrosyl-tRNA synthetase 100.0 3.3E-67 1.1E-71 567.3 24.2 351 22-410 29-411 (690)
18 3tze_A Tryptophanyl-tRNA synth 100.0 5E-67 1.7E-71 534.9 18.1 305 3-329 68-395 (406)
19 3foc_A Tryptophanyl-tRNA synth 100.0 1.7E-65 5.9E-70 528.0 16.0 313 3-336 58-444 (451)
20 1h3f_A Tyrosyl-tRNA synthetase 100.0 1.5E-64 5.3E-69 521.2 20.1 310 9-355 11-345 (432)
21 3hzr_A Tryptophanyl-tRNA synth 100.0 1.6E-64 5.6E-69 513.8 18.6 309 3-336 49-380 (386)
22 2cyb_A Tyrosyl-tRNA synthetase 100.0 5.5E-64 1.9E-68 501.0 22.0 286 9-325 10-321 (323)
23 3hv0_A Tryptophanyl-tRNA synth 100.0 1.4E-64 4.9E-69 515.6 17.0 315 3-338 41-379 (393)
24 3i05_A Tryptophanyl-tRNA synth 100.0 2.6E-64 9E-69 513.9 12.9 311 3-337 45-381 (395)
25 1r6u_A Tryptophanyl-tRNA synth 100.0 4.3E-64 1.5E-68 517.5 12.7 314 3-337 75-414 (437)
26 2yxn_A Tyrosyl-tRNA synthetase 100.0 3E-63 1E-67 495.2 16.9 285 8-324 6-319 (322)
27 2zp1_A Tyrosyl-tRNA synthetase 100.0 2.3E-62 7.7E-67 487.5 22.3 269 21-325 17-308 (314)
28 2dlc_X Tyrosyl-tRNA synthetase 100.0 2.8E-62 9.5E-67 500.4 19.8 301 10-340 13-354 (394)
29 1r6t_A Tryptophanyl-tRNA synth 100.0 2.6E-63 9.1E-68 517.6 12.4 314 3-337 122-461 (477)
30 1n3l_A Tyrosyl-tRNA synthetase 100.0 8.1E-61 2.8E-65 486.3 22.6 289 7-324 8-329 (372)
31 2jan_A Tyrosyl-tRNA synthetase 100.0 4.6E-61 1.6E-65 494.3 17.5 283 11-325 8-317 (432)
32 2pid_A Tyrosyl-tRNA synthetase 100.0 9.4E-61 3.2E-65 482.8 17.7 291 4-324 7-338 (356)
33 1y42_X Tyrosyl-tRNA synthetase 100.0 1.2E-59 4.2E-64 479.6 22.0 290 11-325 39-378 (392)
34 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 2.3E-58 7.9E-63 474.2 22.2 282 9-325 6-316 (420)
35 2ts1_A Tyrosyl-tRNA synthetase 100.0 2.8E-58 9.5E-63 472.7 18.1 280 13-326 8-316 (419)
36 3p0j_A Tyrosyl-tRNA synthetase 100.0 6.1E-47 2.1E-51 409.3 21.5 260 32-324 379-669 (690)
37 1nzj_A Hypothetical protein YA 99.3 3.4E-12 1.2E-16 125.7 7.8 197 37-254 7-252 (298)
38 3afh_A Glutamyl-tRNA synthetas 99.0 1.1E-10 3.8E-15 121.9 5.2 200 35-256 25-285 (488)
39 2ja2_A Glutamyl-tRNA synthetas 99.0 9.8E-11 3.3E-15 122.5 4.5 204 36-256 7-287 (498)
40 1j09_A Glutamyl-tRNA synthetas 99.0 3.1E-10 1E-14 118.1 6.7 194 41-256 7-273 (468)
41 3al0_C Glutamyl-tRNA(Gln) amid 98.9 4.6E-10 1.6E-14 119.8 4.4 200 35-256 129-389 (592)
42 2cfo_A Glutamyl-tRNA synthetas 98.8 1.1E-08 3.8E-13 107.0 12.0 196 38-256 4-277 (492)
43 2o5r_A Glutamyl-tRNA synthetas 98.4 1.3E-06 4.5E-11 91.1 11.4 199 36-256 14-292 (481)
44 4g6z_A Glutamate-tRNA ligase; 98.3 1.9E-06 6.5E-11 89.9 10.5 200 34-256 24-294 (490)
45 2csx_A Methionyl-tRNA syntheta 97.9 0.00028 9.6E-09 73.4 17.2 80 35-117 5-99 (497)
46 3aii_A Glutamyl-tRNA synthetas 97.9 6.7E-05 2.3E-09 79.1 12.1 179 36-235 97-336 (553)
47 2d5b_A Methionyl-tRNA syntheta 97.8 0.00023 7.8E-09 74.0 15.2 79 36-117 4-97 (500)
48 3tqo_A Cysteinyl-tRNA syntheta 97.8 0.0013 4.6E-08 68.1 20.7 72 37-109 28-112 (462)
49 3h99_A Methionyl-tRNA syntheta 97.8 0.00058 2E-08 72.2 17.7 84 32-117 15-112 (560)
50 4dlp_A Aminoacyl-tRNA syntheta 97.7 0.00014 4.8E-09 76.6 11.6 81 35-117 25-119 (536)
51 1qtq_A GLNRS, protein (glutami 97.7 9.2E-05 3.2E-09 78.1 8.8 96 35-137 26-129 (553)
52 3kfl_A Methionyl-tRNA syntheta 97.6 0.0013 4.5E-08 69.7 17.3 80 36-117 27-120 (564)
53 4gri_A Glutamate--tRNA ligase; 97.6 9.2E-05 3.2E-09 77.8 7.5 199 36-256 25-303 (512)
54 1irx_A Lysyl-tRNA synthetase; 97.6 0.00015 5E-09 76.3 9.0 79 36-117 22-129 (523)
55 1li5_A Cysrs, cysteinyl-tRNA s 97.5 0.0069 2.3E-07 62.7 20.3 80 37-117 25-116 (461)
56 3c8z_A Cysteinyl-tRNA syntheta 97.4 0.0019 6.4E-08 65.9 13.9 79 37-117 42-133 (414)
57 2hz7_A Glutaminyl-tRNA synthet 97.3 0.00072 2.5E-08 74.5 10.8 95 36-137 67-169 (851)
58 3sp1_A Cysteinyl-tRNA syntheta 97.1 0.0035 1.2E-07 65.5 13.1 76 35-110 42-140 (501)
59 1iq0_A Arginyl-tRNA synthetase 97.1 0.00037 1.2E-08 74.4 5.6 61 172-244 345-407 (592)
60 2zue_A Arginyl-tRNA synthetase 96.5 0.0021 7.1E-08 69.1 5.3 60 172-244 377-439 (629)
61 1f7u_A Arginyl-tRNA synthetase 95.4 0.027 9.4E-07 60.2 7.8 38 39-76 149-191 (607)
62 3u1f_A Methionyl-tRNA syntheta 93.4 0.22 7.6E-06 51.9 9.2 78 32-109 7-97 (542)
63 1rqg_A Methionyl-tRNA syntheta 92.3 0.37 1.3E-05 52.4 9.3 87 35-124 3-103 (722)
64 1ile_A Ilers, isoleucyl-tRNA s 91.8 0.18 6.1E-06 55.7 6.1 73 171-256 543-621 (821)
65 1wkb_A Leucyl-tRNA synthetase; 90.9 0.23 7.9E-06 54.6 5.8 72 171-255 602-679 (810)
66 2x1l_A Methionyl-tRNA syntheta 90.8 0.16 5.5E-06 52.9 4.2 73 43-117 22-106 (524)
67 1wz2_A Leucyl-tRNA synthetase; 90.8 0.25 8.6E-06 55.5 6.1 73 171-256 602-680 (967)
68 1ffy_A Isoleucyl-tRNA syntheta 90.5 0.3 1E-05 54.6 6.3 74 33-106 47-145 (917)
69 3u1f_A Methionyl-tRNA syntheta 90.1 0.16 5.4E-06 53.1 3.5 68 172-256 278-353 (542)
70 4arc_A Leucine--tRNA ligase; l 89.2 0.61 2.1E-05 51.9 7.4 74 35-108 54-140 (880)
71 3fnr_A Arginyl-tRNA synthetase 88.4 0.11 3.7E-06 53.7 0.7 62 172-244 234-298 (464)
72 2x1l_A Methionyl-tRNA syntheta 87.6 2 6.9E-05 44.5 9.7 70 171-255 264-339 (524)
73 1gax_A Valrs, valyl-tRNA synth 86.7 0.44 1.5E-05 52.9 4.3 73 171-256 480-558 (862)
74 4arc_A Leucine--tRNA ligase; l 83.9 1.4 4.9E-05 48.9 6.7 77 171-256 542-669 (880)
75 2v0c_A Aminoacyl-tRNA syntheta 83.7 0.86 3E-05 50.7 4.9 27 227-256 636-667 (878)
76 1wkb_A Leucyl-tRNA synthetase; 79.4 1.9 6.5E-05 47.3 5.6 100 36-135 36-174 (810)
77 1gax_A Valrs, valyl-tRNA synth 76.2 2.3 7.8E-05 47.2 5.1 75 34-108 34-137 (862)
78 1ffy_A Isoleucyl-tRNA syntheta 75.5 2.5 8.4E-05 47.2 5.1 69 171-255 547-624 (917)
79 2v0c_A Aminoacyl-tRNA syntheta 67.4 4.8 0.00017 44.7 5.1 73 35-108 34-120 (878)
80 1ile_A Ilers, isoleucyl-tRNA s 65.8 2.6 8.7E-05 46.4 2.4 49 32-80 36-89 (821)
81 3ag6_A Pantothenate synthetase 63.2 7.6 0.00026 37.4 4.9 58 172-248 141-198 (283)
82 1v8f_A Pantoate-beta-alanine l 59.9 15 0.00052 35.1 6.4 56 172-246 136-191 (276)
83 2ejc_A Pantoate--beta-alanine 57.3 24 0.00081 33.8 7.2 58 172-248 140-197 (280)
84 1rqg_A Methionyl-tRNA syntheta 56.7 3.7 0.00013 44.6 1.6 71 175-256 292-374 (722)
85 3fnr_A Arginyl-tRNA synthetase 54.2 13 0.00044 38.2 5.1 40 39-78 36-80 (464)
86 2xk0_A Polycomb protein PCL; t 53.8 5.1 0.00018 30.3 1.5 15 384-398 22-36 (69)
87 3cov_A Pantothenate synthetase 50.2 36 0.0012 32.9 7.3 27 171-197 151-177 (301)
88 4hcz_A PHD finger protein 1; p 49.0 6.9 0.00024 28.6 1.5 15 384-398 10-24 (58)
89 3oqi_A YVMC, putative uncharac 47.5 93 0.0032 29.4 9.5 84 36-123 30-125 (257)
90 1wz2_A Leucyl-tRNA synthetase; 45.9 7.8 0.00027 43.4 2.1 44 34-78 34-81 (967)
91 2e5q_A PHD finger protein 19; 42.4 10 0.00034 28.1 1.5 15 384-398 14-28 (63)
92 3n8h_A Pantothenate synthetase 40.3 28 0.00097 33.0 4.7 69 171-258 142-210 (264)
93 3uk2_A Pantothenate synthetase 39.6 13 0.00045 35.7 2.3 49 171-232 140-188 (283)
94 2e5p_A Protein PHF1, PHD finge 38.9 12 0.00042 28.1 1.5 15 384-398 16-30 (68)
95 2m0o_A PHD finger protein 1; t 37.2 8.3 0.00028 29.8 0.4 15 384-398 33-47 (79)
96 3inn_A Pantothenate synthetase 36.6 16 0.00055 35.6 2.4 49 171-232 160-208 (314)
97 3mxt_A Pantothenate synthetase 27.6 21 0.00071 34.3 1.5 49 171-232 141-189 (285)
98 3oqv_A ALBC; rossman fold, cyc 27.0 1E+02 0.0035 28.9 6.0 88 34-123 28-127 (247)
99 4ac1_X Endo-N-acetyl-beta-D-gl 25.0 2.4E+02 0.0083 26.4 8.5 70 37-106 38-120 (283)
100 3zta_A MTR, anti-sigma-factor 23.1 2E+02 0.0068 23.3 6.3 61 298-358 73-136 (146)
101 1y66_A Engrailed homeodomain; 22.0 1.6E+02 0.0054 20.1 4.6 32 331-362 6-37 (52)
102 2eqj_A Metal-response element- 21.7 37 0.0013 25.5 1.5 16 383-398 19-34 (66)
103 3bid_A UPF0339 protein NMB1088 20.4 59 0.002 24.0 2.5 17 382-398 2-18 (64)
No 1
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=100.00 E-value=1.6e-93 Score=726.04 Aligned_cols=349 Identities=36% Similarity=0.594 Sum_probs=303.3
Q ss_pred hhhcccchhhhhhhhcc-ccC-CCcE----EEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHH
Q psy3680 14 KKFVNSSGQQIRHYSDH-KIS-FPQR----IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHK 87 (422)
Q Consensus 14 ~~~~~~~~~~i~~~~~~-~~~-~~~~----i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~ 87 (422)
-+-+++|+++++.+++. +++ +|.+ |||||+|||.+|||||+|+|++|++||+ |++++||||||||+|.+.+++
T Consensus 8 ~~~~~~~hrdld~il~~~e~g~~p~~m~~ri~sG~~PTG~lHLGhyvGal~~~~~LQ~-~~~~~~~IaD~hAlt~~~~~~ 86 (388)
T 3prh_A 8 GKPIPNPLLGLDSTENLYFQGIDPFTMKQTIFSGIQPSGSVTLGNYIGAMKQFVELQH-DYNSYFCIVDQHAITVPQDRL 86 (388)
T ss_dssp ---------------------------CCEEEEEECCCSCCBHHHHHHTHHHHHHTTT-TSEEEEEECHHHHTTSCCCHH
T ss_pred CCCCCCccCCHHHHHHHHHcCCCCcccCCeEEEeeCCCCcchHHHHHHHHHHHHHHHc-cCcEEEEEecceeeecCCCHH
Confidence 34567788777766665 455 5665 9999999999999999999999999997 899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEEcCCCcchhHHHHHHhhccchhhhhcchhHHHHhhhcCCCCccchhhHHHhhhh
Q psy3680 88 DLKENIQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGLFLYPVLQAAD 167 (422)
Q Consensus 88 ~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~~~~~~gl~~YPvLqAaD 167 (422)
++++++++++++|+|+|+||+|++||+||+|++|+++.|+|+|.+++++|+|+++||++.+..+++++|+|+||+|||||
T Consensus 87 ~lr~~~~~~aa~~lA~GlDp~kt~if~qS~v~~~~el~w~l~~~~~~~~L~R~~~fk~k~~~~~~~~~g~~~YPvLQAAD 166 (388)
T 3prh_A 87 ELRKNIRNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGELERMTQFKDKSKGNEAVVSGLLTYPPLMAAD 166 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTEEEEEGGGSTHHHHHHHHHHTTSCHHHHHTTC----------CCBHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCChhHeEEEecccccchHHHHHHHHhhccHHHHHhhhhHhHHhhccCCCcchhHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998876678999999999999999
Q ss_pred hhccCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHH
Q psy3680 168 ILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPE 247 (422)
Q Consensus 168 il~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~ 247 (422)
|++|++|+||||.||+||+|+|||||+|||+.||++|++|+++++ ..+++||||+||++|||||++|++|+|+|+|+|+
T Consensus 167 Il~~~ad~vPvG~DQ~~hleltRdia~rfn~~y~~~f~~p~~li~-~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~p~ 245 (388)
T 3prh_A 167 ILLYGTDLVPPGEDQKQHLELTRNLAERFNKKYNDIFTIPEVKIP-KVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPK 245 (388)
T ss_dssp HHTTTCCEECCCSSCHHHHHHHHHHHHHHHHHTCSCCCCCEECCC-SCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCCHH
T ss_pred HHHhCCCEEEechhHHHHHHHHHHHHHHhCcccCCCcccchhhhc-ccccccccCCCCCCccCCCCCCCCCeeecCCCHH
Confidence 999999999999999999999999999999999999999999996 3578999998888899999987779999999999
Q ss_pred HHHHHhhhhccCCCCccccCCCCCcchhhHHHHHHhcCCCCHHHHHHHHhCCChhHHHHHHHHHHHhhcCcHHHHHHHHh
Q psy3680 248 VIVRKCKKALTDCTSAVTYDPENRPAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLM 327 (422)
Q Consensus 248 ~I~kKI~~A~tD~~~~~~~~p~~~p~~~~l~~~~~~~t~~~~eei~~~~~~~~~~dlK~~Lae~i~~~l~pir~~~~~l~ 327 (422)
+|++||++|+||+.+.++++|+++|+++|+++||+.+++.++++++++|.+.+|+++|+.|+++|+++|+|+|++|++++
T Consensus 246 ~I~kKI~ka~TD~~~~~~~~~~~~p~v~~l~~i~~~~~~~~~eel~~~y~g~~~g~lK~~lae~l~~~l~pirer~~~~~ 325 (388)
T 3prh_A 246 QLEKKIKSAVTDSEGIVKFDKENKPGVSNLLTIYSILGNTTIEELEAKYEGKGYGEFKGDLAEVVVNALKPIQDRYYELI 325 (388)
T ss_dssp HHHHHHHTCCCCSSCCCCCCTTTCHHHHHHHHHHHHHHTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccCCCCCcccCCCCCCCCcchHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998788899889999999999999999999999999999889999999999999999999999999999
Q ss_pred cCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCccc
Q psy3680 328 KSKEHLEKVLLDGSIRAQAIAVETWDEVKSAAVGGILT 365 (422)
Q Consensus 328 ~~~~~l~~iL~~Ga~kAr~iA~~tl~~vr~avgl~~~~ 365 (422)
+|+ +|++||++|++|||++|++||++||++||+..+.
T Consensus 326 ~~~-~l~~il~~Ga~kA~~~A~~tl~~v~~~~g~~~~~ 362 (388)
T 3prh_A 326 ESE-ELDRILDEGAERANRTANKMLKKMENAMGLGRKR 362 (388)
T ss_dssp TSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--
T ss_pred CCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 999 6999999999999999999999999999987543
No 2
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=3.2e-91 Score=700.38 Aligned_cols=326 Identities=38% Similarity=0.621 Sum_probs=310.3
Q ss_pred CcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q psy3680 35 PQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQ 114 (422)
Q Consensus 35 ~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~ 114 (422)
+.+|||||+|||.+|||||+|+|++|++||+. ++++|+||||||+|.+.+++++++++++++++|+|+|+||+|++||+
T Consensus 6 ~~~v~sG~~PTG~lHLGhy~g~l~~~~~lQ~~-~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i~~ 84 (341)
T 3sz3_A 6 KPIVLSGVQPSGELSIGNYLGALRQWQQMQDD-YDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDPKKSTLFV 84 (341)
T ss_dssp SCEEEEEECSSSCCBHHHHHHTGGGHHHHHHH-SEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEE
T ss_pred CCEEEeCcCCCCcccHHHHHHHHHHHHHHHhc-CeEEEEEecceeEcCCCCHHHHHHHHHHHHHHHHHcCCChhhcEEEe
Confidence 46999999999999999999999999999994 79999999999999989999999999999999999999999999999
Q ss_pred cCCCcchhHHHHHHhhccchhhhhcchhHHHHhhhc-CCCCccchhhHHHhhhhhhccCccEEeecCchhHHHHHHHHHH
Q psy3680 115 QSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAEL-KQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLT 193 (422)
Q Consensus 115 qSdi~e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~-~~~~~gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hielaRdia 193 (422)
||+|++|.+++|+|+|++++++|+|++++|++..+. +++++|+|+||+||||||++|++|+||||.||+||+|+|||+|
T Consensus 85 qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~~~~~~g~~~YP~lQaaDil~~~ad~vpvG~DQ~~hlel~Rdia 164 (341)
T 3sz3_A 85 QSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYANDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIA 164 (341)
T ss_dssp GGGCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHhhccHHHHHHHHHHHHHHhhccCCCChhhHHhHHHHHHHHHHcCCCEEEeccchHHHHHHHHHHH
Confidence 999999999999999999999999999999987653 5799999999999999999999999999999999999999999
Q ss_pred HHhccccC---ccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHHHHhhhhccCCCC--ccccCC
Q psy3680 194 QLFNNKFD---KIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTS--AVTYDP 268 (422)
Q Consensus 194 ~r~n~~~g---~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~A~tD~~~--~~~~~p 268 (422)
+|||+.|| ++|++|++++. ..+++||||+||.+|||||++|++|+|+|+|+|++|++||++|+||+.+ .+.+++
T Consensus 165 ~rfn~~yg~~~~~f~~p~~li~-~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~~a~Td~~~~~~~~~~~ 243 (341)
T 3sz3_A 165 TRFNNIYSPEQPIFTIPEPYIP-TVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINKAQTDAETPPRIAYDV 243 (341)
T ss_dssp HHHHHHHCSSSCSSCCCEECCC-SCCCCCEETTEEEEECCTTCSCGGGCCBTTCCHHHHHHHHHTCCCCCCSSCCCCCCT
T ss_pred HHhchhccCCCcccccChhhhc-cCcccccCCCCCCCccCCCCCCCCCeeecCCCHHHHHHHhhhccCCCCCCcccccCC
Confidence 99999999 79999999985 2479999998766899999986678999999999999999999999976 567888
Q ss_pred CCCcchhhHHHHHHhcCCCCHHHHHHHHhC-CChhHHHHHHHHHHHhhcCcHHHHHHHHhcCHHHHHHHHHhhHHHHHHH
Q psy3680 269 ENRPAVSNLITLHALCTNQLPQDICTQVKH-LNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVLLDGSIRAQAI 347 (422)
Q Consensus 269 ~~~p~~~~l~~~~~~~t~~~~eei~~~~~~-~~~~dlK~~Lae~i~~~l~pir~~~~~l~~~~~~l~~iL~~Ga~kAr~i 347 (422)
+++|+++|+++||+.|++.++++++++|.+ ++|+++|+.|++.|+++|+|+|++|+++++|+++|++||++|++|||++
T Consensus 244 ~~~p~v~~l~~~~~~~~~~~~e~i~~~~~g~~~~g~~K~~lae~i~~~l~pirer~~~~~~~~~~l~~il~~G~~kA~~~ 323 (341)
T 3sz3_A 244 ENKAGIANLMGLYSAATGKTFAEIEAQYAGVEMYGPFKKDVGEAVVAMLEPVQAEYQRIRNDREYLNSVMRDGAEKASAK 323 (341)
T ss_dssp TTCHHHHHHHHHHHHHHCCCHHHHHHHTTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHHcCCccHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999987 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccC
Q psy3680 348 AVETWDEVKSAAVGG 362 (422)
Q Consensus 348 A~~tl~~vr~avgl~ 362 (422)
|++||++||++||+.
T Consensus 324 A~~tl~~v~~~~g~~ 338 (341)
T 3sz3_A 324 ALQTLKKVYAAVGFV 338 (341)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999999975
No 3
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=100.00 E-value=8e-91 Score=697.89 Aligned_cols=329 Identities=38% Similarity=0.613 Sum_probs=310.5
Q ss_pred cCCCcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q psy3680 32 ISFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSI 111 (422)
Q Consensus 32 ~~~~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~ 111 (422)
...+++||||++|||.+|||||+|+|++|++||+ +++++|+||||||+|++.+++.+++++++++++|+|+|+||+|++
T Consensus 12 ~~~~~~i~sG~~PTG~lHLGh~vg~l~~~~~lQ~-~~~~~~~iaD~hA~t~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~ 90 (346)
T 3n9i_A 12 VSSKPIVFSGAQPSGELTIGNYMGALRQWVQMQD-DYDCIYCIVDLHAITARQDPALLRKRTLDTLALYLACGIDPKKST 90 (346)
T ss_dssp ---CCEEEEEECSCSCCBHHHHHHTHHHHHTTTT-TSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHHTCCTTTSE
T ss_pred CCCCCEEEECcCCCCcccHHHHHHHHHHHHHHHh-hCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCccceE
Confidence 3456799999999999999999999999999998 589999999999999989999999999999999999999999999
Q ss_pred EEEcCCCcchhHHHHHHhhccchhhhhcchhHHHHhhhc-CCCCccchhhHHHhhhhhhccCccEEeecCchhHHHHHHH
Q psy3680 112 LFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAEL-KQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLAN 190 (422)
Q Consensus 112 i~~qSdi~e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~-~~~~~gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hielaR 190 (422)
||+||+|++|.+++|+|+|++++++|+|++++|++..+. +++++|+|+||+||||||++|++|+||||.||+||+|+||
T Consensus 91 if~qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~~~~~~g~~~YP~lQAaDil~~~ad~vpvG~DQ~~hleltR 170 (346)
T 3n9i_A 91 IFVQSHVPEHSQLSWALNCYTYFGELSRMTQFKDKSARYAENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSR 170 (346)
T ss_dssp EEEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHSGGGCBHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHH
T ss_pred EEeccccccchHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCCCchhHHhHHHHHHHHHHhCceEEEeccchHHHHHHHH
Confidence 999999999999999999999999999999999987654 5699999999999999999999999999999999999999
Q ss_pred HHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHHHHhhhhccCCCC--ccccCC
Q psy3680 191 HLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTS--AVTYDP 268 (422)
Q Consensus 191 dia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~A~tD~~~--~~~~~p 268 (422)
|+|+|||+.||++|++|++++. ..+++||||+||.+|||||++|++|+|+|+|+|++|++||++|+||+.. .+.+++
T Consensus 171 dia~rfn~~yg~~f~~p~~li~-~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~kA~Td~~~~~~~~~~~ 249 (346)
T 3n9i_A 171 DIASRFNNLYGDIFKIPEPFIP-KAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRAMTDSDEPALIRYDV 249 (346)
T ss_dssp HHHHHHHHHHSSCSCCCEECCC-CCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCHHHHHHHHHTCCCCCCSSCCCCCCT
T ss_pred HHHHHhccccCCcccccchhcc-CCcccCccCCCCccccCCCCCCCCceecCCCCHHHHHHHHHhCcCCCCCCccccCCC
Confidence 9999999999999999999995 2468999998777899999997778999999999999999999999975 356787
Q ss_pred CCCcchhhHHHHHHhcCCCCHHHHHHHHhCCChhHHHHHHHHHHHhhcCcHHHHHHHHhcCHHHHHHHHHhhHHHHHHHH
Q psy3680 269 ENRPAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVLLDGSIRAQAIA 348 (422)
Q Consensus 269 ~~~p~~~~l~~~~~~~t~~~~eei~~~~~~~~~~dlK~~Lae~i~~~l~pir~~~~~l~~~~~~l~~iL~~Ga~kAr~iA 348 (422)
+++|+++|++.||+.|++.++++++++|.+.+++++|+.|++.|+++|+|+|++|+++++|+++|++||++|++|||++|
T Consensus 250 ~~~p~v~~l~~~~~~~~~~~~eel~~~y~~~~~g~lK~~lae~l~~~L~pirer~~~~~~~~~~l~~il~~G~~kA~~~A 329 (346)
T 3n9i_A 250 EKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLKGAVADAVSGMLSELQERYRTYREDEALLQDVMREGAAKARARA 329 (346)
T ss_dssp TTCHHHHHHHHHHHHHHCCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHhcCCccHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccC
Q psy3680 349 VETWDEVKSAAVGG 362 (422)
Q Consensus 349 ~~tl~~vr~avgl~ 362 (422)
++||++||++||+.
T Consensus 330 ~~tl~~v~~~~g~~ 343 (346)
T 3n9i_A 330 QVTLAKVYEAIGFV 343 (346)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999999975
No 4
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=100.00 E-value=8.5e-89 Score=680.94 Aligned_cols=324 Identities=38% Similarity=0.651 Sum_probs=309.8
Q ss_pred cEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q psy3680 36 QRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQQ 115 (422)
Q Consensus 36 ~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~q 115 (422)
++||+||+|||++|||||+|+|++|++||+ |++++++|||+||+|.+.+++++++|+++++++|+|+|+||++++||+|
T Consensus 2 ~~vysG~~PTG~lHlGn~vg~l~~~~~lQ~-g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~if~q 80 (328)
T 1i6k_A 2 KTIFSGIQPSGVITIGNYIGALRQFVELQH-EYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQ 80 (328)
T ss_dssp CEEEEEECCCSCCBHHHHHHTHHHHHHHTT-TSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEG
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHHHc-CCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEec
Confidence 589999999999999999999999999998 8999999999999999899999999999999999999999999999999
Q ss_pred CCCcchhHHHHHHhhccchhhhhcchhHHHHhhhcCCCCccchhhHHHhhhhhhccCccEEeecCchhHHHHHHHHHHHH
Q psy3680 116 SQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQL 195 (422)
Q Consensus 116 Sdi~e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~~~~~~gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hielaRdia~r 195 (422)
|+|++|.++.|+++|++++++|+|+++||+++.+.+++++|+|+||+||||||++|++|+||||.||+||+|++||+|+|
T Consensus 81 S~~~~~~~l~w~l~~~~~~~~l~r~~~~k~~~~~~~~~~~g~f~YPvLQaaDil~~~~~~vpvG~DQ~~~iel~Rdia~r 160 (328)
T 1i6k_A 81 SEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGKEAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAER 160 (328)
T ss_dssp GGCTHHHHHHHHHHHHSCHHHHHTCHHHHHHHTTCSSCCHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHHH
T ss_pred CchhhhhHHHHHHhccccHHHHHHHHHHHHHHhccCCCCchhhccHHHHHHHHHHhCCCEEecccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988655679999999999999999999999999999999999999999999
Q ss_pred hccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHHHHhhhhccCCCCccccCCCCCcchh
Q psy3680 196 FNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVS 275 (422)
Q Consensus 196 ~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~A~tD~~~~~~~~p~~~p~~~ 275 (422)
||+.||++|++|+++++ ..+++||||+||.+|||||++|..|+|||+|+|++|++||++|+||+.+.+.++|..+|+++
T Consensus 161 ~n~~yg~~f~~P~~li~-~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~i~~KI~~a~td~~~~~~~~~~~~p~v~ 239 (328)
T 1i6k_A 161 FNKRYGELFTIPEARIP-KVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGTIRYDKEAKPGIS 239 (328)
T ss_dssp HHHHHCSCCCCCEEECC-SSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHHCCCCSSCCCCCBTTTBHHHH
T ss_pred hCcccccccCCCeeeec-cccccccCCCCCccCCCCCCCCcCceeeecCCHHHHHHHHHhcCCCCccccccCCCCCcchh
Confidence 99999999999999985 26899999988778999999973334999999999999999999999877889998889999
Q ss_pred hHHHHHHhcCCCCHHHHHHHHhCCChhHHHHHHHHHHHhhcCcHHHHHHHHhcCHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3680 276 NLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVLLDGSIRAQAIAVETWDEV 355 (422)
Q Consensus 276 ~l~~~~~~~t~~~~eei~~~~~~~~~~dlK~~Lae~i~~~l~pir~~~~~l~~~~~~l~~iL~~Ga~kAr~iA~~tl~~v 355 (422)
+++.||++|+..++++++++|.+++++++|+.||++|+++|+|+|++|+++++|++ |++||.+|++|||++|++||++|
T Consensus 240 ~~~~~~~~~~~~~~~el~~~~~g~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~-~~~il~~g~~~a~~~a~~~~~~v 318 (328)
T 1i6k_A 240 NLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWMESEE-LDRVLDEGAEKANRVASEMVRKM 318 (328)
T ss_dssp HHHHHHHHHHCCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHCCchhHHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhCChh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHhccC
Q psy3680 356 KSAAVGG 362 (422)
Q Consensus 356 r~avgl~ 362 (422)
|++||+.
T Consensus 319 ~~~~g~~ 325 (328)
T 1i6k_A 319 EQAMGLG 325 (328)
T ss_dssp HHHHTCC
T ss_pred HHHcCCC
Confidence 9999974
No 5
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=100.00 E-value=1.6e-88 Score=677.21 Aligned_cols=317 Identities=31% Similarity=0.510 Sum_probs=299.9
Q ss_pred CcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q psy3680 35 PQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQ 114 (422)
Q Consensus 35 ~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~ 114 (422)
..+|||||+|||++|||||+|+|++|++||+ |++++|+|||+||+|.+.+++++++++++++++|+|+|+||+|++||+
T Consensus 3 ~~~vysG~~PTg~lHlG~~lg~l~~~~~lQ~-g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp~k~~i~~ 81 (322)
T 3tzl_A 3 AMRVLTGLQPSGDLHIGNYFGAIKQMVDAQE-KSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWL 81 (322)
T ss_dssp -CCBEEEECCSSCCBHHHHHHTHHHHHHTTT-TSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEE
T ss_pred ceEEEEccCCCccccHHHHHHHHHHHHHHhc-CCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEE
Confidence 4589999999999999999999999999999 999999999999999777999999999999999999999999999999
Q ss_pred cCCCcchhHHHHHHhhccchhhhhcchhHHHHhhhcCCCCccchhhHHHhhhhhhccCccEEeecCchhHHHHHHHHHHH
Q psy3680 115 QSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQ 194 (422)
Q Consensus 115 qSdi~e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~~~~~~gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hielaRdia~ 194 (422)
||+|++|.++.|.++|++++++|+|+++||+|....+++++|+|+||+||||||++|+||+||||.||+||+|+|||+|+
T Consensus 82 qS~~~~~~el~~~l~~~~~~~~l~r~~~~K~~~~~~~~~~~g~f~YP~LQAaDil~~~~~~vpvG~DQ~~hi~l~Rdia~ 161 (322)
T 3tzl_A 82 QSDVKEVMELYWILSQFTPMGLLERAHSYKDKVAKGLSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIAL 161 (322)
T ss_dssp GGGCTHHHHHHHHHGGGCBHHHHHSCHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHTTCSEEECCGGGHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHhccCcHHHHHhhhHHHHHHccCCCCchHHHHHHHHHHHHHHHhCCcEEEeccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999876678999999999999999999999999999999999999999999
Q ss_pred HhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHHHHhhhhccCCCCccccCCCCCcch
Q psy3680 195 LFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAV 274 (422)
Q Consensus 195 r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~A~tD~~~~~~~~p~~~p~~ 274 (422)
|||+.||++|++|++++. ..+++||||+| +|||||++| +|||+|+|++|++||++|+||+.+. ++| .+|++
T Consensus 162 r~n~~~g~~f~~P~~~~~-~~~~~l~~l~G--~KMSKS~~n---~I~L~d~p~~i~~KI~~a~td~~~~--~~~-~~~~~ 232 (322)
T 3tzl_A 162 KVNNEWGEIFTLPEARVN-EEVAVVVGTDG--AKMSKSYQN---TIDIFSSEKTLKKQISSIVTDSTAL--EDP-KDHEN 232 (322)
T ss_dssp HHHHHHCSCSCCCEEECC-CSSCCCBCTTS--SBCCGGGTC---CCBSSCCHHHHHHHHHTCCCCCCCT--TSC-CCGGG
T ss_pred HhcccccCCCCCchhhhc-cccccccCCCC--CcCCCCCCC---ceecCCCHHHHHHHHHhccCCCccc--cCC-CCCcc
Confidence 999999999999999984 36899999964 799999987 9999999999999999999999753 456 67999
Q ss_pred hhHHHHHHhcC-CCCHHHHHHHHh--CCChhHHHHHHHHHHHhhcCcHHHHHHHHhcCHHHHHHHHHhhHHHHHHHHHHH
Q psy3680 275 SNLITLHALCT-NQLPQDICTQVK--HLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVLLDGSIRAQAIAVET 351 (422)
Q Consensus 275 ~~l~~~~~~~t-~~~~eei~~~~~--~~~~~dlK~~Lae~i~~~l~pir~~~~~l~~~~~~l~~iL~~Ga~kAr~iA~~t 351 (422)
+++++|++.|+ ..++++++++|. +++++++|+.||++|+++|+|+|++|+++++|+++|++||++|++|||++|++|
T Consensus 233 ~~v~~~~~~~~~~~~i~~l~~~~~~g~~~~~~~K~~lae~l~~~l~pir~~~~~~~~~~~~l~~il~~G~~~a~~~a~~t 312 (322)
T 3tzl_A 233 CNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKEAREKYNELLEKPSHLKEILDFGATKARKIAQEK 312 (322)
T ss_dssp CHHHHHHGGGCCHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHTHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999995 446888888997 699999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q psy3680 352 WDEVKSAAVG 361 (422)
Q Consensus 352 l~~vr~avgl 361 (422)
|++||++||+
T Consensus 313 ~~~v~~~~g~ 322 (322)
T 3tzl_A 313 MQKIYEKIGL 322 (322)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhCc
Confidence 9999999985
No 6
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=100.00 E-value=7.7e-89 Score=686.00 Aligned_cols=325 Identities=32% Similarity=0.489 Sum_probs=307.9
Q ss_pred CCcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q psy3680 34 FPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILF 113 (422)
Q Consensus 34 ~~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~ 113 (422)
.+.+|||||+|||++|||||+|+|++|++||+ |++++|+|||+||+|.+.+++++++++++++++|+|+|+||++++||
T Consensus 3 ~~~~i~sG~~PTG~lHLGn~vg~l~~~~~lQ~-~~~~~~~IaD~ha~~~~~d~~~i~~~~~~~~~~~lA~Gldp~k~~if 81 (348)
T 2yy5_A 3 MMKRALTGIQASGKQHLGNYLGVMQSLIELQE-QCQLFVFVADLHSITVDFQPQALKQNNFDLVRTLLAVGLDPQKACLF 81 (348)
T ss_dssp -CCEEEEEECCCTTCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEE
T ss_pred CCeEEEEeeCCCCcccHHHHHHHHHHHHHHHh-CCcEEEEEcChhhccCCCCHHHHHHHHHHHHHHHHHhCCChhHeEEE
Confidence 45799999999999999999999999999998 78999999999999987999999999999999999999999999999
Q ss_pred EcCCCcchhHHHHHHhhccchhhhhcchhHHHHhhh-------cCCCCccchhhHHHhhhhhhccCccEEeecCchhHHH
Q psy3680 114 QQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAE-------LKQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNI 186 (422)
Q Consensus 114 ~qSdi~e~~el~w~l~~~~~~~~l~r~~~~K~k~~~-------~~~~~~gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hi 186 (422)
+||+|++|.++.|+++|++++++|+|+++||+++.+ .+++++|+|+||+||||||++|++|+||||.||+||+
T Consensus 82 ~qS~~~~~~el~w~l~~~~~~~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaaDil~~~a~~vpvG~DQ~~~l 161 (348)
T 2yy5_A 82 LQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHL 161 (348)
T ss_dssp EGGGCHHHHHHHHHHHHHSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHHHHHHHTTCCSEEECCGGGHHHH
T ss_pred ECCcccchhHHHHHHHhhccHHHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHHHHHHhCccEEEecccHHHHH
Confidence 999999999999999999999999999999998754 3579999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHHHHhhhhccCCCCcccc
Q psy3680 187 NLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTY 266 (422)
Q Consensus 187 elaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~A~tD~~~~~~~ 266 (422)
|++||+|+|||+.||++|++|+++++ ..+++||||+||.+|||||++|++|+|||+|+|++|++||++|+||+.+.+.+
T Consensus 162 el~Rdia~r~n~~yg~~f~~P~~l~~-~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~~i~~KI~~a~td~~~~~~~ 240 (348)
T 2yy5_A 162 ELTRDLAQRIQKKFKLKLRLPQFVQN-KDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQATTDSFNKIRF 240 (348)
T ss_dssp HHHHHHHHHHHHHHCCCCCCCEEECC-TTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHHHHHHHHTCCCCSSCCCSC
T ss_pred HHHHHHHHHhhhhcccccCCCeeecc-cccccccCCCCcchhcCCCCCCCCceEeecCCHHHHHHHHHhCCCCCcccccc
Confidence 99999999999999999999999995 24699999998778999999986669999999999999999999999877889
Q ss_pred CCCCCcchhhHHHHHHhcCCCCHH---------HHHHHHhCCChhHHHHHHHHHHHhhcCcHHHHHHHHhcCHHHHHHHH
Q psy3680 267 DPENRPAVSNLITLHALCTNQLPQ---------DICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVL 337 (422)
Q Consensus 267 ~p~~~p~~~~l~~~~~~~t~~~~e---------ei~~~~~~~~~~dlK~~Lae~i~~~l~pir~~~~~l~~~~~~l~~iL 337 (422)
+|..+|++++++.||+.|++.+++ +++++|.+++|+++|++||++|+++|+|+|++|+++ +|++ |+++|
T Consensus 241 ~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~g~~~~~~K~~La~~i~~~l~pire~~~~~-~d~~-~~~~l 318 (348)
T 2yy5_A 241 ASKTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTKSYLDLKNALTEATVNLLVNIQRKREQI-SREQ-VFNCL 318 (348)
T ss_dssp CTTTCHHHHHHHHHHHHHTTSGGGHHHHHHHCSCHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHSS-CHHH-HHHHH
T ss_pred CCCCCCchhhHHHHHHhCChHhhhhhcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-cCch-HHHHH
Confidence 998899999999999999999999 999999999999999999999999999999999999 8998 99999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhccC
Q psy3680 338 LDGSIRAQAIAVETWDEVKSAAVGG 362 (422)
Q Consensus 338 ~~Ga~kAr~iA~~tl~~vr~avgl~ 362 (422)
.+|++|||++|++||++||++||+.
T Consensus 319 ~~G~~~a~~~a~~t~~~v~~~~g~~ 343 (348)
T 2yy5_A 319 QAGKNQAQATARTTLALFYDGFGLG 343 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999985
No 7
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=5.2e-87 Score=670.30 Aligned_cols=323 Identities=37% Similarity=0.581 Sum_probs=296.2
Q ss_pred cEEEEeecCCCccchhhHHHHHHHHHHHHHcC-CcEEEEeeCceeeccC--CCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q psy3680 36 QRIFSGIQPTGTLHLGNYFGAVQTWSALQNKG-EDVIFCIVDLHSITIK--QKHKDLKENIQLMAASLLACGIDPQKSIL 112 (422)
Q Consensus 36 ~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g-~~~~ilIaD~hAlt~~--~~~~~i~~~~~~i~a~~lA~Gldp~k~~i 112 (422)
.+||+||+|||.||||||+|+|++|++||+.| ++++++|||+||+|.+ .+++.+++++++++++|+|+|+||++++|
T Consensus 2 ~~vy~G~~PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i 81 (337)
T 2el7_A 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTL 81 (337)
T ss_dssp CCEEEEECSCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEE
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEE
Confidence 48999999999999999999999999999999 9999999999999965 89999999999999999999999999999
Q ss_pred EEcCCCcchhHHHHHHhhccchhhhhcchhHHHHhhhcCCCCccchhhHHHhhhhhhccCccEEeecCchhHHHHHHHHH
Q psy3680 113 FQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHL 192 (422)
Q Consensus 113 ~~qSdi~e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~~~~~~gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hielaRdi 192 (422)
|+||+|++|.++.|+++|++++++|+|+++||+|++..+++++|+|+||+||||||++|+||+||||+||+||++++||+
T Consensus 82 ~~qS~~~~~~el~~~l~~~~~~~~l~r~~~~k~r~~~~~~~~~g~f~YPvLQaaDil~~~~~lvp~G~DQ~~~i~l~rdl 161 (337)
T 2el7_A 82 FVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASKQETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREI 161 (337)
T ss_dssp EEGGGSTHHHHHHHHHHHTSBHHHHHTSHHHHHHTTSSSCCBHHHHHHHHHHHHHHHHTTCCEEECCGGGCHHHHHHHHH
T ss_pred EEcCcchhhHHHHHHHHccCCHHHHHHhHHHHHHhccCCCCChHHHHhHHHHHhhHHhhCCcEEEcccchHHHHHHHHHH
Confidence 99999999999999999999999999999999998766789999999999999999999999999999999999999999
Q ss_pred HHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHHHHhhhhccCCCCccccCCCCCc
Q psy3680 193 TQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRP 272 (422)
Q Consensus 193 a~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~A~tD~~~~~~~~p~~~p 272 (422)
|+|||+.||++|++|+++++ ..+++||||+| .+|||||++| +|||+|+|++|++||++|+||+.+.+.++|. +|
T Consensus 162 a~r~n~~~g~~f~~P~~~~~-~~~p~l~gldG-~~KMSKS~~n---~I~L~d~p~~i~~Ki~~a~td~~~~~~~~~~-~p 235 (337)
T 2el7_A 162 ARRFNHLFGETFPEPQALLN-PEAPRVPGIDG-KAKMSKSLGN---TIGLLEPEESIWQKIQHLPDDPQRIRLSDPG-DP 235 (337)
T ss_dssp HHHHHHHHSSCCCCCEEECC-TTSCCCBCTTS-SSBCCTTTTC---CCBSSSCHHHHHHHHHTCCCCC------------
T ss_pred HHHHHhhcCcccCCCeeecc-cccccccCCCC-ccccCCCCCC---eeeCcCCHHHHHHHHHhCCCCCccccccCCC-CC
Confidence 99999999999999999984 12399999975 5899999997 9999999999999999999999888888985 49
Q ss_pred chhhHHHHHHhcCCC-CHHHHHHHHh--CCChhHHHHHHHHHHHhhcCcHHHHHHHHhcCHHHHHHHHHhhHHHHHHHHH
Q psy3680 273 AVSNLITLHALCTNQ-LPQDICTQVK--HLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVLLDGSIRAQAIAV 349 (422)
Q Consensus 273 ~~~~l~~~~~~~t~~-~~eei~~~~~--~~~~~dlK~~Lae~i~~~l~pir~~~~~l~~~~~~l~~iL~~Ga~kAr~iA~ 349 (422)
+++++++|++.|++. ++++++++|. +++++++|+.||++|+++|+|+|++|+++++|+++|++||++|++|||++|+
T Consensus 236 ~~~~v~~~~~~~t~~~~i~~l~~~~~~g~~~~~~~K~~La~~i~~~l~p~re~~~~~~~~~~~l~~il~~G~~~a~~~a~ 315 (337)
T 2el7_A 236 ERTILFTYLSYFAPKDLVEALKEEYRKAGVGTYVVKRILFDHLMEALRPIRERAEALKKDPDYVMDALLEGAKRARAVAQ 315 (337)
T ss_dssp --CHHHHHHHHHSCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHcCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987 8999999997 6999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCcc
Q psy3680 350 ETWDEVKSAAVGGIL 364 (422)
Q Consensus 350 ~tl~~vr~avgl~~~ 364 (422)
+||++||++||+..+
T Consensus 316 ~~~~~v~~~~g~~~~ 330 (337)
T 2el7_A 316 ATMEEVREKVGLLLP 330 (337)
T ss_dssp HHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHcCCCcc
Confidence 999999999998643
No 8
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=100.00 E-value=8.6e-87 Score=669.21 Aligned_cols=322 Identities=31% Similarity=0.530 Sum_probs=300.7
Q ss_pred CCCcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeecc-CCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q psy3680 33 SFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITI-KQKHKDLKENIQLMAASLLACGIDPQKSI 111 (422)
Q Consensus 33 ~~~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~-~~~~~~i~~~~~~i~a~~lA~Gldp~k~~ 111 (422)
-..++||+|++|||+||||||+|+|++|++||++|++++++|||+||+|. +.||+.+++++++++++|+|+|+||+|++
T Consensus 10 ~~~~~v~~G~~PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~Gldp~k~~ 89 (340)
T 2g36_A 10 HHHMRILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACGIDPEKSV 89 (340)
T ss_dssp --CCEEEEEECCCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTCCTTTSE
T ss_pred cCCCeEEEeeCCCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhCCChhHeE
Confidence 35689999999999999999999999999999999999999999999994 88999999999999999999999999999
Q ss_pred EEEcCCCcchhHHHHHHhhccchhhhhcchhHHH---HhhhcCCCCccchhhHHHhhhhhhccCccEEeecCchhHHHHH
Q psy3680 112 LFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVE---KCAELKQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINL 188 (422)
Q Consensus 112 i~~qSdi~e~~el~w~l~~~~~~~~l~r~~~~K~---k~~~~~~~~~gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hiel 188 (422)
||+||+|+++.++.|.++|++++++|+|+++||+ |....+++++|+|+||+||||||++|++|+||||+||+||+|+
T Consensus 90 if~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~r~~~~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l 169 (340)
T 2g36_A 90 IFVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNYKDLSTAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIEL 169 (340)
T ss_dssp EEEGGGCTHHHHHHHHHHTTSCHHHHHTCHHHHTC-------CCCSHHHHTHHHHHHHHHHTTTCSEEEECGGGHHHHHH
T ss_pred EEECCchHHHHHHHHHHHccCCHHHHHHhHHHHhHHHHhccCCCCChHHhhhHHHHHhhHHHhCCCEEEcccchHHHHHH
Confidence 9999999999999999999999999999999999 7765567999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHHHHhhhhccCCCCccccCC
Q psy3680 189 ANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDP 268 (422)
Q Consensus 189 aRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~A~tD~~~~~~~~p 268 (422)
|||+|+|||+.||++|++|++++ ..+++||||+ | +|||||++| +|||+|+|++|++||++|+||+.+.+.++|
T Consensus 170 ~rdia~r~n~~yg~~f~~P~~~~--~~~~~l~gld-G-~KMSKS~~n---~I~L~dsp~~i~~Ki~~a~td~~~~~~~~~ 242 (340)
T 2g36_A 170 TREIARRFNYLYDEVFPEPEAIL--SRVPKLPGTD-G-RKMSKSYGN---IINLEISEKELEQTILRMMTDPARVRRSDP 242 (340)
T ss_dssp HHHHHHHHHHHSCCCCCCCEEEE--CCSCCCCCTT-S-SCCCGGGTC---CCBTTCCHHHHHHHHHTCCCCTTCSSTTSC
T ss_pred HHHHHHHhhhhcccccCCchhhh--ccccccCCCC-c-cccCCCCCC---eEeeeCCHHHHHHHHHhCCCCcccccccCC
Confidence 99999999999999999999988 3589999997 3 599999986 899999999999999999999988888999
Q ss_pred CCCcchhhHHHHHHhcCC-C-CHHHHHHHHh--CCChhHHHHHHHHHHHhhcCcHHHHHHHHhcCHHHHHHHHHhhHHHH
Q psy3680 269 ENRPAVSNLITLHALCTN-Q-LPQDICTQVK--HLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVLLDGSIRA 344 (422)
Q Consensus 269 ~~~p~~~~l~~~~~~~t~-~-~~eei~~~~~--~~~~~dlK~~Lae~i~~~l~pir~~~~~l~~~~~~l~~iL~~Ga~kA 344 (422)
++|+++++++|++.|++ . ++++++++|. +++++++|++||++|+++|+|+|++|+++++|+++|++||++|++||
T Consensus 243 -~~p~~~~v~~~~~~f~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~~~~il~~g~~~a 321 (340)
T 2g36_A 243 -GNPENCPVWKYHQAFDISEEESKWVWEGCTTASIGCVDCKKLLLKNMKRKLAPIWENFRKIDEDPHYVDDVIMEGTKKA 321 (340)
T ss_dssp -CCGGGCHHHHHHHHTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHH
T ss_pred -CCCchhHHHHHHHHHCCCHhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 88999999999999985 3 4588999997 37899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccC
Q psy3680 345 QAIAVETWDEVKSAAVGG 362 (422)
Q Consensus 345 r~iA~~tl~~vr~avgl~ 362 (422)
|++|++||++||++||+.
T Consensus 322 ~~~a~~t~~~v~~~~g~~ 339 (340)
T 2g36_A 322 REVAAKTMEEVRRAMNLM 339 (340)
T ss_dssp HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 999999999999999985
No 9
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=100.00 E-value=9.6e-85 Score=656.88 Aligned_cols=322 Identities=29% Similarity=0.407 Sum_probs=301.2
Q ss_pred CCCcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeec-cCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q psy3680 33 SFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSIT-IKQKHKDLKENIQLMAASLLACGIDPQKSI 111 (422)
Q Consensus 33 ~~~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt-~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~ 111 (422)
+.+.+||+||+|||.+|||||+|+|++|++||+. ++++++|||+||+| ++.+++++++|+++++++|+|+|+||++++
T Consensus 20 ~~~~~vysG~~PTG~lHLGn~~g~l~~~~~lQ~~-~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~ 98 (351)
T 1yi8_B 20 PARPRVLTGDRPTGALHLGHLAGSLQNRVRLQDE-AELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTT 98 (351)
T ss_dssp -CCSEEEEEECCSSCCBHHHHHHTHHHHHHHTSS-SEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTEE
T ss_pred CCCcEEEEeeCCCCCccHHHHHHHHHHHHHHHHh-CCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhhcE
Confidence 5678999999999999999999999999999998 89999999999999 589999999999999999999999999999
Q ss_pred EEEcCCCcchhHHHHHHhhccchhhhhcchhHHHHhhhc---CCCCccchhhHHHhhhhhhccCccEEeecCchhHHHHH
Q psy3680 112 LFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAEL---KQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINL 188 (422)
Q Consensus 112 i~~qSdi~e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~---~~~~~gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hiel 188 (422)
||+||+|++|.++.|.++|++++++|+|+++||+|++.. +++++|+|+||+||||||++|++|+||||+||+||+++
T Consensus 99 i~~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l 178 (351)
T 1yi8_B 99 CVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQ 178 (351)
T ss_dssp EEEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHHHHHHHTCSEEEECGGGHHHHHH
T ss_pred EEEcCchhhHHHHHHHHhccCCHHHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHhhHHhcCCCEEEecCCcHHHHHH
Confidence 999999999999999999999999999999999998642 57999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHHHHhhhhccCCCCccccCC
Q psy3680 189 ANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDP 268 (422)
Q Consensus 189 aRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~A~tD~~~~~~~~p 268 (422)
+||+|+|||+.||++|++|+++++ .+++||||+ |.+|||||++| +|||+|+|++|++||++|+||+.+.+.++|
T Consensus 179 ~rdia~r~n~~yg~~f~~P~~~~~--~~~~l~~ld-G~~KMSKS~~n---~I~L~d~p~~i~~Ki~~a~td~~~~~~~~~ 252 (351)
T 1yi8_B 179 TREIVRRFNALYAPVLAEPQAQLS--RVPRLPGLD-GQAKMSKSLGN---AIALGDSADEVARKVMGMYTDPGHLRASDP 252 (351)
T ss_dssp HHHHHHHHHHHTCSCSCCCEEEEC--SSCSCCCTT-SSSCCCTTTTC---CCBTTCCHHHHHHHHHTCCCCTTCCSTTSC
T ss_pred HHHHHHHHHhhcccccCCCeeeee--cCccccCCC-CccccCCCCCC---eecCCCCHHHHHHHHHhcCCCcccccccCC
Confidence 999999999999999999999883 479999995 45699999997 999999999999999999999988888898
Q ss_pred CCCcchhhHHHHHHhcCC-C-CHHHHHHHHh--CCChhHHHHHHHHHHHhhcCcHHHHHHHHhcCHHHHHHHHHhhHHHH
Q psy3680 269 ENRPAVSNLITLHALCTN-Q-LPQDICTQVK--HLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVLLDGSIRA 344 (422)
Q Consensus 269 ~~~p~~~~l~~~~~~~t~-~-~~eei~~~~~--~~~~~dlK~~Lae~i~~~l~pir~~~~~l~~~~~~l~~iL~~Ga~kA 344 (422)
++++.++++.|+..|+. . ++++++++|. +++++++|+.||++|+++|+|+|++|+++++|+++|++||++|++||
T Consensus 253 -~~~~~~~~~~~l~~~~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~l~~il~~G~~~a 331 (351)
T 1yi8_B 253 -GRVEGNPVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRAEYERDPDAVLRFVTEGTARG 331 (351)
T ss_dssp -CCCTTCTTHHHHHHHCSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred -CCCccchHHHHHHHHcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 45777788999988874 2 4578988997 48999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccC
Q psy3680 345 QAIAVETWDEVKSAAVGG 362 (422)
Q Consensus 345 r~iA~~tl~~vr~avgl~ 362 (422)
|++|++||++||++||+.
T Consensus 332 ~~~a~~t~~~v~~~~g~~ 349 (351)
T 1yi8_B 332 REVAAQTLGQVRRAMRLF 349 (351)
T ss_dssp HHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHhCCc
Confidence 999999999999999974
No 10
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=4e-73 Score=577.96 Aligned_cols=318 Identities=21% Similarity=0.256 Sum_probs=272.6
Q ss_pred ccchhHHHHHhhhhcccchhhhhhhhcc-ccCCCcEEEEeecCCCccchhhHHHHH-HHHHHHHH-cCCcEEEEeeCcee
Q psy3680 3 RFKAHLLLTHMKKFVNSSGQQIRHYSDH-KISFPQRIFSGIQPTGTLHLGNYFGAV-QTWSALQN-KGEDVIFCIVDLHS 79 (422)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~i~tGi~PTG~lHLGny~g~i-~~~~~lq~-~g~~~~ilIaD~hA 79 (422)
|+||+..+..++|.+..+.++++.+++. +++++++||+|++|||++|||||+|++ .+| ||+ .|++++|+|||+||
T Consensus 40 ~~~~~~~h~~~~Rg~i~~~~d~~~l~~~~~~~~p~~i~sG~~PTG~lHLGh~v~~~~~~~--lQ~~~g~~~~i~IaD~ha 117 (392)
T 3jxe_A 40 ELTKSELPIFFRRKFFFSHRDYDLILKDYEEGRGFFLYTGRGPSGPMHIGHIIPFFATKW--LQEKFGVNLYIQITDDEK 117 (392)
T ss_dssp HHTTSCCCHHHHTTSEEEEESHHHHHHHHHTTCCCEEEEEECCSSCCBHHHHHHHHHHHH--HHHHHCCEEEEEECHHHH
T ss_pred HHhCCCcHHHHhCcCcccccCHHHHHHHHhcCCCeEEEeccCCCCchhHHHHHHHHHHHH--HHHhcCCceEEEecchHH
Confidence 5678888999999999888877666544 578999999999999999999999986 456 898 79999999999999
Q ss_pred ec-cC-CCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCcchhHHHHHHhhccchhhhhcchhHHHHhhhcCCCCccc
Q psy3680 80 IT-IK-QKHKDLKENIQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGL 157 (422)
Q Consensus 80 lt-~~-~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~~~~~~gl 157 (422)
++ ++ .+++++++++++++++|+|+|+||+|++||+||+|+++.++.|.++|.+++++|.++..++ +++++|+
T Consensus 118 ~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~~~~~~~~l~~~~t~~~~~~~~~~~------~~~~~g~ 191 (392)
T 3jxe_A 118 FLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFTKIYEMAIPIAKKINFSMAKAVFGFT------EQSKIGM 191 (392)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEETTTSTHHHHHHHHHHHHSBHHHHHHHHCCC------TTSBHHH
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHhCcCccceEEEECchhHHHHHHHHHHHhhCCHHHHhhhhccC------CCCchHH
Confidence 98 44 7999999999999999999999999999999999999999999999999999998876654 5689999
Q ss_pred hhhHHHhhhhhhcc-CccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCC
Q psy3680 158 FLYPVLQAADILLY-KATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDS 236 (422)
Q Consensus 158 ~~YPvLqAaDil~~-~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~ 236 (422)
|+||+||||||+++ ++|+||||.||+||+++|||+|+|||+ ++|.+++ +++||||+|+++|||||++|
T Consensus 192 f~YP~LQaaDil~~~~a~~vpvG~DQ~~hl~l~Rdla~r~n~------~~p~~l~----~~~l~gLdG~~~KMSKS~~n- 260 (392)
T 3jxe_A 192 IFFPAIQIAPTFFERKRCLIPAAIDQDPYWRLQRDFAESLGY------YKTAALH----SKFVPSLTSLSGKMSASKPE- 260 (392)
T ss_dssp HHHHHHHHGGGGSSSSCEEEEEEGGGHHHHHHHHHHTGGGTS------CCCEEEE----ECCCCCSSCSSSCCCTTSGG-
T ss_pred HHHHHHHHhhHHhhcCCceeecccchHHHHHHHHHHHHHcCC------CCCeeee----cccccCCCCCccccccCCCC-
Confidence 99999999999999 599999999999999999999999994 5788776 78999998776799999987
Q ss_pred CCcEeccCCHHHHHHHhhh-hccCCCCccccC--CCCCcchhhHHHHHHhcCC---CCHHHHHHHHh--CCChhHHHHHH
Q psy3680 237 NSKIEITDPPEVIVRKCKK-ALTDCTSAVTYD--PENRPAVSNLITLHALCTN---QLPQDICTQVK--HLNTGQYKLLL 308 (422)
Q Consensus 237 ~s~I~L~Dsp~~I~kKI~~-A~tD~~~~~~~~--p~~~p~~~~l~~~~~~~t~---~~~eei~~~~~--~~~~~dlK~~L 308 (422)
|+|+|+|+|++|++||++ |+||+...+++. .+++|+++++++|+..|+. .++++++++|. +++|+++|++|
T Consensus 261 -s~I~L~D~p~~I~kKI~k~A~td~~~~~~~~~~~~~~P~~~~~~~~l~~~~~~~~~~~eel~~~~~~G~l~~gdlK~~l 339 (392)
T 3jxe_A 261 -TAIYLTDSPEDVEKKVWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRYL 339 (392)
T ss_dssp -GCCBTTCCHHHHHHHHHTCC--------------------CHHHHHHHHTTCCCHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred -CeeeCCCCHHHHHHHHHhhccCCCCcccccccccCCCCchhHHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHHHHHHH
Confidence 899999999999999999 999996544332 2478899999999999863 46788888997 38999999999
Q ss_pred HHHHHhhcCcHHHHHHHHhcCHHHHHHHHHhhHHH
Q psy3680 309 ADVLVEKFKPIRDEIEYLMKSKEHLEKVLLDGSIR 343 (422)
Q Consensus 309 ae~i~~~l~pir~~~~~l~~~~~~l~~iL~~Ga~k 343 (422)
+++|+++|+|+|++|+++. ++|++++..|+.+
T Consensus 340 ae~i~~~l~pirer~~~~~---~~v~~~l~~g~~~ 371 (392)
T 3jxe_A 340 ISKIQEFLKEHQRRRKKAE---KLVEKFKYTGKLA 371 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHT---TSHHHHHTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHcCccc
Confidence 9999999999999999998 6899999999644
No 11
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=100.00 E-value=2.4e-69 Score=548.23 Aligned_cols=297 Identities=21% Similarity=0.276 Sum_probs=254.4
Q ss_pred hhhhhhhhccccCCCcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeec-c--CCCHHHHHHHHHHHH
Q psy3680 21 GQQIRHYSDHKISFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSIT-I--KQKHKDLKENIQLMA 97 (422)
Q Consensus 21 ~~~i~~~~~~~~~~~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt-~--~~~~~~i~~~~~~i~ 97 (422)
.+.|+.+++ ++++++||+||+|||++||||.+..+.+|++||++||+++|+|||+||++ + +.+++++++++.+++
T Consensus 44 ~~~L~~~L~--~~~~~~iy~G~~PTg~lHlG~gvl~~~~~~~lQ~~G~~~~~lIaD~ha~i~d~~~~~~~~i~~~~~~~~ 121 (373)
T 3vgj_A 44 PDELRVKLL--LKRKLICYDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKKVGSYFI 121 (373)
T ss_dssp HHHHHHHHH--HCSSCEEEEEECCCSSCBHHHHHHHHHHHHHHHTTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHh--cCCCceEEeCCCCCCCceehhhHHHHHHHHHHHHCCCcEEEEEecceeEecCCCCCCHHHHHHHHHHHH
Confidence 357888873 57788999999999999999954323358899999999999999999999 4 369999999999999
Q ss_pred HHHHHcCCCCCceEEEEcCCCc-chhHHHHHHhh----ccchhhhhcchhHHHHhhhcCCCCccchhhHHHhhhhhhccC
Q psy3680 98 ASLLACGIDPQKSILFQQSQVP-EHTQLAWVLTC----LCTVNRLNHMPTYVEKCAELKQSPTGLFLYPVLQAADILLYK 172 (422)
Q Consensus 98 a~~lA~Gldp~k~~i~~qSdi~-e~~el~w~l~~----~~~~~~l~r~~~~K~k~~~~~~~~~gl~~YPvLqAaDil~~~ 172 (422)
+.|+|+|+||+|++||+||+|+ +|.+++|.+.| ++++++|.++++++.|... +++++|+|+||+||||||++|+
T Consensus 122 ~~~~a~G~dp~k~~i~~~S~~~~~~~~l~~~~~~~i~~~~tv~rm~~~~~~~~r~~~-~~~~~g~f~YPlLQaaDil~l~ 200 (373)
T 3vgj_A 122 EVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRSEG-EENYCSQILYPCMQCADIFFLN 200 (373)
T ss_dssp HHHHHTTCCSTTEEEEEHHHHHHHSHHHHHHHHHHHHTTSBHHHHHTTGGGGTCCTT-SCCBTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCChhheEEEeChhHHhhhhHHHHHHHHHHHccCcHHHHHhhhHHHhhhcc-CCCChHHHHHHHHHHhcccccC
Confidence 9999999999999999999998 89999997654 7899999999999987653 5799999999999999999999
Q ss_pred ccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHHHH
Q psy3680 173 ATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRK 252 (422)
Q Consensus 173 a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~kK 252 (422)
||+||||.||++|+++|||+|+|||+.|+ |..+ .+++||||+||.+|||||++| |+|||+|+|++|++|
T Consensus 201 ad~vpgG~DQ~~~l~l~Rdla~r~~~~~~-----~~~l----~~p~l~gL~dG~~KMSKS~~~--~~I~L~D~p~~i~~K 269 (373)
T 3vgj_A 201 VDICQLGIDQRKVNMLAREYCDIKKIKKK-----PVIL----SHGMLPGLLEGQEKMSKSDEN--SAIFMDDSESDVNRK 269 (373)
T ss_dssp CSEECCBGGGHHHHHHHHHHHHHHTCSCC-----CEEE----EBCCCCCSSTTCCSCCSSSTT--CCCBTTCCHHHHHHH
T ss_pred CcEEEcchhhHHHHHHHHHHHHHhCCCCC-----ceEE----eCCeeecCCCCCCCCcCCCCC--CeeecCCCHHHHHHH
Confidence 99999999999999999999999998643 3333 378999997666799999975 799999999999999
Q ss_pred hhhhccCCCCccccCCCCCcchh----hHHHHHHhc------------CCCCHHHHHHHHh--CCChhHHHHHHHHHHHh
Q psy3680 253 CKKALTDCTSAVTYDPENRPAVS----NLITLHALC------------TNQLPQDICTQVK--HLNTGQYKLLLADVLVE 314 (422)
Q Consensus 253 I~~A~tD~~~~~~~~p~~~p~~~----~l~~~~~~~------------t~~~~eei~~~~~--~~~~~dlK~~Lae~i~~ 314 (422)
|++|+||+.. ++ .+|... .+|+++..| ++.++++++++|. +++|+++|++|+++|++
T Consensus 270 I~kA~td~~~-~~----~n~~~~~~~~~~f~~~~~f~~~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~lae~i~~ 344 (373)
T 3vgj_A 270 IKKAYCPPNV-IE----NNPIYAYAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQELEHDYVNGFIHPLDLKDNVAMYINK 344 (373)
T ss_dssp HHHSCCCTTC-CT----TCHHHHHHHHTHHHHHSSEEECCCGGGTCCEEECCHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHhCcCCCCC-CC----CCcchhhhhhhhhhhhhhhcccccccccCCcCcccHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 9999999742 22 333332 355666554 2468999999997 48999999999999999
Q ss_pred hcCcHHHHHHHHhcCHHHHHHH
Q psy3680 315 KFKPIRDEIEYLMKSKEHLEKV 336 (422)
Q Consensus 315 ~l~pir~~~~~l~~~~~~l~~i 336 (422)
+|+|||++|++..+.++++++|
T Consensus 345 ~l~Pire~~~~~~~~~~~l~~v 366 (373)
T 3vgj_A 345 LLQPVRDHFQNNIEAKNLLNEI 366 (373)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhHHHHHHHH
Confidence 9999999999877666666665
No 12
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=9.7e-70 Score=551.94 Aligned_cols=285 Identities=23% Similarity=0.278 Sum_probs=250.2
Q ss_pred hhhhhhhccccCCCcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeecc-C--CCHHHHHHHH-HHHH
Q psy3680 22 QQIRHYSDHKISFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITI-K--QKHKDLKENI-QLMA 97 (422)
Q Consensus 22 ~~i~~~~~~~~~~~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~-~--~~~~~i~~~~-~~i~ 97 (422)
+.|++++ +++++++||+||+|||++|||||++++++|++||++|++++++|||+||+|. + .++++|++|+ .+++
T Consensus 22 ~~l~~~l--~~~~~~~vy~G~~PTg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~~ 99 (375)
T 2cyc_A 22 ENLRHLF--EIGAPLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFK 99 (375)
T ss_dssp HHHHHHH--HHTCCCBEEEEECCCSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTHH
T ss_pred HHHHHHH--hcCCCcEEEeCCCCCCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 4677777 4577899999999999999999999999999999999999999999999994 3 4999999999 8888
Q ss_pred ----HHHHHcCCCCCceEEEEcCCCcchhHHHHHH----hhccchhhhhcchhHHHHhhhcCCCCccchhhHHHhhhhhh
Q psy3680 98 ----ASLLACGIDPQKSILFQQSQVPEHTQLAWVL----TCLCTVNRLNHMPTYVEKCAELKQSPTGLFLYPVLQAADIL 169 (422)
Q Consensus 98 ----a~~lA~Gldp~k~~i~~qSdi~e~~el~w~l----~~~~~~~~l~r~~~~K~k~~~~~~~~~gl~~YPvLqAaDil 169 (422)
++|+|+|+||++++||+||+|+++. ++|.+ ++++++++|.|+++||+|.. .+++++|+|+||+||||||+
T Consensus 100 ~~~~~~~la~G~dp~k~~i~~qS~~~~~~-~~~~~~~~~~~~~~~~~m~~~~~~k~r~~-~~~i~~g~f~YP~LQaaDil 177 (375)
T 2cyc_A 100 VGMEKSIEVMGGDPKKVEFVLASEILEKG-DYWQTVIDISKNVTLSRVMRSITIMGRQM-GEAIDFAKLIYPMMQVADIF 177 (375)
T ss_dssp HHHHHHHHHTTCCGGGSEEEETHHHHTBH-HHHHHHHHHHTTSBHHHHHHTGGGGTCCC-CTTCBTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCccceEEEEcchhhhhh-HHHHHHHHHhceeEHHHHhccchhhhhcc-CCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 88886 99999999999999998774 25689999999999999999
Q ss_pred ccCccEEeecCchhHHHHHHHHHHHHhcc---cc-CccCCCCeecccCCCCcccccCCCC----------------Cccc
Q psy3680 170 LYKATHIPAGLDQIHNINLANHLTQLFNN---KF-DKIFPIPQLLPQDESAGKVKSLKDP----------------SKKM 229 (422)
Q Consensus 170 ~~~a~~vpvG~DQ~~hielaRdia~r~n~---~~-g~~f~~P~~li~~~~~~~lp~L~~~----------------~~KM 229 (422)
+|+||+||||.||+||+++|||+|+|||+ .| |+.| .|..+ .+++||||+|| ++||
T Consensus 178 ~~~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~~~~g~~~-~~~~~----~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KM 252 (375)
T 2cyc_A 178 YQGVTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHEGEKL-KPVAV----HHHLLLGLQEPPKWPIESEEEFKEIKAQMKM 252 (375)
T ss_dssp HTTCSEEEEEGGGHHHHHHHHHHGGGCSSSCEEETTEEE-CCEEE----EECCCBCSSCCSSSSCCSHHHHHHHHHHHBG
T ss_pred HhCCCeecccchHHHHHHHHHHHHHHhCCcccccccccC-ccEEe----ccccccCCCCcccccccchhhhhhhhhhhcc
Confidence 99999999999999999999999999997 22 3323 34433 48999999875 4899
Q ss_pred ccCCCCCCCcEeccCCHHHHHHHhhhhccCCCCccccCCCCCcchhhHHHHHHhcC---------------------CCC
Q psy3680 230 SKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSNLITLHALCT---------------------NQL 288 (422)
Q Consensus 230 SKS~~n~~s~I~L~Dsp~~I~kKI~~A~tD~~~~~~~~p~~~p~~~~l~~~~~~~t---------------------~~~ 288 (422)
|||++| |+|||+|+|++|++||++|+||+.. ++.+.++.|++.|+ ..+
T Consensus 253 SKS~~~--~~I~L~d~p~~i~~KI~~A~t~~~~---------~~~~~v~~~~~~~~f~~~~~~~~i~~~~~~gg~~~~~~ 321 (375)
T 2cyc_A 253 SKSKPY--SAVFIHDSPEEIRQKLRKAFCPARE---------VRYNPVLDWVEYIIFREEPTEFTVHRPAKFGGDVTYTT 321 (375)
T ss_dssp GGSCGG--GSCBTTCCHHHHHHHHHHSCCCTTC---------CSSCHHHHHHHHTTTSSSSCCEEECCCGGGTCCEEESS
T ss_pred cCCCCC--CeeccCCCHHHHHHHHHHhcCCCCC---------CCCChHHHHHHHHhcCCCCcceeeecchhccCcCChhH
Confidence 999975 7999999999999999999999842 22345677776664 356
Q ss_pred HHHHHHHHhC--CChhHHHHHHHHHHHhhcCcHHHHHHHH
Q psy3680 289 PQDICTQVKH--LNTGQYKLLLADVLVEKFKPIRDEIEYL 326 (422)
Q Consensus 289 ~eei~~~~~~--~~~~dlK~~Lae~i~~~l~pir~~~~~l 326 (422)
+++++++|.+ ++|+++|++||++|+++|+|+|++|++.
T Consensus 322 ~~el~~~~~~g~~~~~~~K~~La~~l~~~l~pir~~~~~~ 361 (375)
T 2cyc_A 322 FEELKRDFAEGKLHPLDLKNAVAEYLINLLEPIRRYFEKH 361 (375)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999974 8999999999999999999999999864
No 13
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=100.00 E-value=5.9e-69 Score=544.42 Aligned_cols=297 Identities=16% Similarity=0.232 Sum_probs=250.8
Q ss_pred cchhHHHHHhhhhccc--chhhhhhhhccccCCCcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeec
Q psy3680 4 FKAHLLLTHMKKFVNS--SGQQIRHYSDHKISFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSIT 81 (422)
Q Consensus 4 ~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt 81 (422)
....-.+.-..|+..+ +.+.|++++ ++++++++|+||+|||++|||| ++++.+|++||++|++++++|||+||+|
T Consensus 4 ~~~~~~~~l~~r~~~e~~~~~~L~~~l--~~~~~~~iy~G~~PTg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~ 80 (364)
T 2cya_A 4 VDVEERFNRIARNTVEIVTEEELKGLL--ASGARIKGYIGYEPSGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYI 80 (364)
T ss_dssp CHHHHHHHHHHTTCSEEETHHHHHHHH--HHCSCCEEEEEECCCSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHcCchhcCCHHHHHHHH--hcCCCCEEEeccCCCCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhh
Confidence 3333344555555433 335787777 4678899999999999999999 7779999999999999999999999999
Q ss_pred cC---CCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCcchhHHHHH----HhhccchhhhhcchhHHHHhhhcCCCC
Q psy3680 82 IK---QKHKDLKENIQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWV----LTCLCTVNRLNHMPTYVEKCAELKQSP 154 (422)
Q Consensus 82 ~~---~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~e~~el~w~----l~~~~~~~~l~r~~~~K~k~~~~~~~~ 154 (422)
.+ .+++++++|+++++++|+|+|+||++++||+||+|+++ .++|. ++|++++++|+|+++||+|.....+++
T Consensus 81 ~~ps~~~~e~i~~~~~~~~~~~la~G~dp~k~~i~~qS~~~~~-~~~~~~~~~l~~~~t~~~l~r~~~~k~r~~~~~~i~ 159 (364)
T 2cya_A 81 NDKLGGDMDLIRAAARIVRRVMEAAGVPVERVRFVDAEELASD-KDYWGLVIRVAKRASLARVRRALTIMGRRAEEAEVD 159 (364)
T ss_dssp TTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGCEEEEHHHHHTC-HHHHHHHHHHHHTSCHHHHHTTC------CCGGGSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhcc-hHHHHHHHHHHCcCcHHHHHcCchhhhhhcCCCCcc
Confidence 43 79999999999999999999999999999999999988 57776 999999999999999999887555699
Q ss_pred ccchhhHHHhhhhhhccCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCC----------
Q psy3680 155 TGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKD---------- 224 (422)
Q Consensus 155 ~gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~---------- 224 (422)
+|+|+||+||||||++|++|+||||.||+||+++|||+|+|||+ +.|..+. +++||||+|
T Consensus 160 ~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~~~l~rdla~r~~~------~~p~~l~----~~ll~~l~g~~~~~~~~~~ 229 (364)
T 2cya_A 160 ASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVAEKLGR------KKPVAIH----TPIISSLQGPGRMEASQGE 229 (364)
T ss_dssp THHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHTTTTC------CCCEEEE----ECCCBCSSCC---------
T ss_pred chhhhhHHHHHhhHHhcCCCEEeccchHHHHHHHHHHHHHHcCC------CCceeec----cceeeCCCccccccccccc
Confidence 99999999999999999999999999999999999999999994 3565543 899999986
Q ss_pred -----CCcccccCCCCCCCcEeccCCHHHHHHHhhhhccCCCCccccCCCCCcchhhHHHHHHhcCC-------------
Q psy3680 225 -----PSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSNLITLHALCTN------------- 286 (422)
Q Consensus 225 -----~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~A~tD~~~~~~~~p~~~p~~~~l~~~~~~~t~------------- 286 (422)
|++|||||+++ |+|||+|+|++|++||++|+||+.+ ++.+.++.|++.|++
T Consensus 230 ~~~~~~g~KMSKS~~~--~~I~L~d~p~~i~~Ki~~a~td~~~---------~~~~~v~~~~~~~~f~~~~~~~~i~r~~ 298 (364)
T 2cya_A 230 IDDVLAEVKMSKSKPE--TAVFVVDSDDDIRRKIRKAYCPAKQ---------VQGNPVLEIARYILFARDGFTLRVDRPA 298 (364)
T ss_dssp -------CBCCSSSGG--GSCBTTCCHHHHHHHHHTSCCCTTC---------CTTCHHHHHHHHTTTTSTTCCEECC---
T ss_pred ccccccccccCCCCCC--CEeeccCCHHHHHHHHHhCcCCCCC---------CCCCcHHHHHHHHhcccccCceeeeccc
Confidence 57899999765 7999999999999999999999842 223457777776553
Q ss_pred --------CCHHHHHHHHhC--CChhHHHHHHHHHHHhhcCcHHHHHHH
Q psy3680 287 --------QLPQDICTQVKH--LNTGQYKLLLADVLVEKFKPIRDEIEY 325 (422)
Q Consensus 287 --------~~~eei~~~~~~--~~~~dlK~~Lae~i~~~l~pir~~~~~ 325 (422)
.++++++++|.+ ++++++|++||++|+++|+|+|++|++
T Consensus 299 ~~G~~~~~~~~~el~~~~~~g~~~~~~lK~~la~~l~~~l~pir~~~~~ 347 (364)
T 2cya_A 299 KYGGPVEYTSYEELERDYTDGRLHPLDLKNAVAESLIEVVRPIRGAVLG 347 (364)
T ss_dssp -----CEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 489999999974 899999999999999999999999974
No 14
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=100.00 E-value=3e-69 Score=547.59 Aligned_cols=312 Identities=20% Similarity=0.271 Sum_probs=268.3
Q ss_pred ccchhHHHHHhhhhcccchhhhhhhhcc-ccCCCcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeec
Q psy3680 3 RFKAHLLLTHMKKFVNSSGQQIRHYSDH-KISFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSIT 81 (422)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt 81 (422)
|.+++..|..|+|.+..|+++++.+++. +++++++||||++|||.+|||||+|+ .+++.+|+.|++++|+|||+||+|
T Consensus 37 ~~~~~~~h~~lrRgi~f~hRd~d~il~~~e~gk~~~v~sG~~PTG~lHLGhyv~~-~~~~~lq~~~~~~~~~IaD~ha~t 115 (372)
T 3a04_A 37 RKAGMEPSFLMRRGIIFGHRDFDKILEAKARGERVAVLTGFMPSGKFHFGHKLTV-DQLIYLQKNGFKVFVAIADAEAFA 115 (372)
T ss_dssp HHTTCCCCHHHHTTSEEEEESHHHHHHHHHTTCCCEEEEEECCCSCCBHHHHHHH-HHHHHHHHTTCEEEEEECHHHHHH
T ss_pred HhccCCcchhhccceeeeccCHHHHHHHHHcCCCCEEEeCcCCCcHhHHHHHHHH-HHHHHHHhCCCeEEEEEecchhhc
Confidence 4567777889999999999999888876 79999999999999999999999985 567889999999999999999999
Q ss_pred cC--CCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCC-CcchhHHHHHHhhccchhhhhcchhHHHHhhhcCCCCccch
Q psy3680 82 IK--QKHKDLKENIQLMAASLLACGIDPQKSILFQQSQ-VPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGLF 158 (422)
Q Consensus 82 ~~--~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSd-i~e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~~~~~~gl~ 158 (422)
.. .+++.++.++++++++|+|||+||+|++||+||+ .+++.++.|.++|.+++++++++. ...+.|.|
T Consensus 116 ~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~if~qS~~~~~~~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~ 186 (372)
T 3a04_A 116 VRRIGREEAVRIAVEEYIANMIALGLDPKDTEFYFQTNRGTPYFRLIQLFSGKVTAAEMEAIY---------GELTPAKM 186 (372)
T ss_dssp TTCCCHHHHHHHHHHTTHHHHHHHTCCTTTCEEEEGGGSCHHHHHHHHHHTTSSCHHHHHHHH---------SSCCHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCChHHcchhhhccchHHHHHHHHHHHhhhhHHHHhhhh---------hccCcccc
Confidence 43 4677899999999999999999999999999999 578999999999999999987653 34688999
Q ss_pred hhHHHhhhhhhc--------cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccc
Q psy3680 159 LYPVLQAADILL--------YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMS 230 (422)
Q Consensus 159 ~YPvLqAaDil~--------~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMS 230 (422)
+||+||||||++ |++++||||.||+||+|||||||+|||+.|+ ++.|..++ ++++|||+ |+|||
T Consensus 187 ~yP~lqAaDil~~~~d~~~gy~a~~VPVG~DQ~~hleltRdiA~rfn~~~~--~~~P~~~~----~~~~pgld--G~KmS 258 (372)
T 3a04_A 187 MASLTQAADILHVQLDEYGGYRHVVVPVGADQDPHLRLTRDLADRMAGVVE--LERPASTY----HKLQPGLD--GRKMS 258 (372)
T ss_dssp HHHHHHHHHHHGGGSGGGTCCCCEEEEEEGGGHHHHHHHHHHHHHTTTTSC--CCCCEEEE----ECCCBCTT--SSBCC
T ss_pred cCCcchhHHHhhhcCccccCccceecccchhhHHHHHHHHHHHHHhcCccc--ccChhhhh----hcccCCCC--CCccC
Confidence 999999999999 5666999999999999999999999998877 66777776 78999996 47999
Q ss_pred cCCCCCCCcEeccCCHHHHHHHhhhhccCCCCcccc--CCCCCcchhhHHHHHHh--cC-CCCHHHHHHHHh--CCChhH
Q psy3680 231 KSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTY--DPENRPAVSNLITLHAL--CT-NQLPQDICTQVK--HLNTGQ 303 (422)
Q Consensus 231 KS~~n~~s~I~L~Dsp~~I~kKI~~A~tD~~~~~~~--~p~~~p~~~~l~~~~~~--~t-~~~~eei~~~~~--~~~~~d 303 (422)
||++| |+|+|+|+|++|++||++|+||+....+. +.+++|++++++.++.. +. ..+++++.++|. +++|++
T Consensus 259 ~S~~n--s~I~l~D~p~~i~kKI~ka~td~~~~~~~~~~~~G~p~~~~i~~~~l~~~~~d~~e~~ei~~~y~~G~l~~ge 336 (372)
T 3a04_A 259 SSRPD--STIFLTDPPEVARNKLFRALTGGRATAEEQRRLGGVPEVCSVYHMDLYHLMPDDGEVKHIYTSCRLGKILCGE 336 (372)
T ss_dssp TTSGG--GSCBTTCCHHHHHHHHHTCCCSCCSSHHHHHHHCCCGGGCHHHHHHHHTTCCSHHHHHHHHHHHHTTCCCHHH
T ss_pred CCCCC--cccccCCCHHHHHHHHhcCccCCCCCcccccccCCCCchhhHHHHHHHccCCCHHHHHHHHHHHhcCCCCHHH
Confidence 99987 89999999999999999999998654321 11256788999875433 32 346778888886 599999
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHhcCHHHHHHHH
Q psy3680 304 YKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVL 337 (422)
Q Consensus 304 lK~~Lae~i~~~l~pir~~~~~l~~~~~~l~~iL 337 (422)
+|+.|++.|+++|+|+|+||++. ++.++++|
T Consensus 337 ~K~~l~e~l~~~l~p~rer~e~~---~~~~~kil 367 (372)
T 3a04_A 337 CKQIAWEKLERFLAEHQSRLEKA---KTIAWKLV 367 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHh
Confidence 99999999999999999999764 44555544
No 15
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=1.8e-68 Score=537.98 Aligned_cols=291 Identities=19% Similarity=0.229 Sum_probs=238.4
Q ss_pred HHHhhhhccc--chhhhhhhhccccCCCcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeec-cC--C
Q psy3680 10 LTHMKKFVNS--SGQQIRHYSDHKISFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSIT-IK--Q 84 (422)
Q Consensus 10 ~~~~~~~~~~--~~~~i~~~~~~~~~~~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt-~~--~ 84 (422)
+.-..|+..+ +.+.++.+++ .++++++|+|++|||++|||||++++.+|++||++|++++++|||+||+| ++ .
T Consensus 15 ~~l~~r~~~e~~~~~~L~~~L~--~~~~~~vy~G~~PTg~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~~~ 92 (348)
T 2j5b_A 15 LTQLLSIAEECETLDRLKQLVD--SGRIFTAYNGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNG 92 (348)
T ss_dssp HHHHHTTCSEESCHHHHHHHHH--HTCCEEEEEEECCCSSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGG
T ss_pred HHHHHcCcccccCHHHHHHHHh--cCCCCEEEeccCCCCCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCCCC
Confidence 4445555533 4567888883 36789999999999999999998889999999999999999999999999 44 4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCC-cchhHHHHHHhh----ccchhhhhcchhHHHHhhhcCCCCccchh
Q psy3680 85 KHKDLKENIQLMAASLLACGIDPQKSILFQQSQV-PEHTQLAWVLTC----LCTVNRLNHMPTYVEKCAELKQSPTGLFL 159 (422)
Q Consensus 85 ~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi-~e~~el~w~l~~----~~~~~~l~r~~~~K~k~~~~~~~~~gl~~ 159 (422)
+++++++|+++++++|+|+|+||++++||+||+| +++. ++|.+.+ ++++++|.+++++++|.+ .+++++|+|+
T Consensus 93 ~~e~i~~~~~~~~~~~la~Gldp~k~~i~~qs~~~~~~~-~~~~~~~~v~~~~~~~~m~~~~~~~~r~~-~~~i~~g~f~ 170 (348)
T 2j5b_A 93 DINKIRELGRYFIEVFKACGINLDGTRFIWASEFIASNP-SYIERMLDIAEFSTISRVKRCCQIMGRNE-SDCLKASQIF 170 (348)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHHHHCH-HHHHHHHHHHHHHHHHHHTC------------------CC
T ss_pred CHHHHHHHHHHHHHHHHHhcCCccceEEEECCHhhhhhh-HHHHHHHHHHhheeHHHHHhhhhhhhhhc-cCCcChHHHh
Confidence 8999999999999999999999999999999998 6676 8888765 999999999999998753 3568999999
Q ss_pred hHHHhhhhhhcc---CccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCC
Q psy3680 160 YPVLQAADILLY---KATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDS 236 (422)
Q Consensus 160 YPvLqAaDil~~---~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~ 236 (422)
||+||||||+++ +||+||||.||+||++++||+|+|||+.| |..+ .+++||||+||.+|||||++|
T Consensus 171 YP~lQaaDil~~~~~~~~~~~~G~DQ~~~i~l~Rdia~r~~~~~------p~~~----~~~~l~gL~dg~~KMSKS~~~- 239 (348)
T 2j5b_A 171 YPCMQAADVFELVPEGIDICQLGIDQRKVNMLAIEYANDRGLKI------PISL----SHHMLMSLSGPKKKMSKSDPQ- 239 (348)
T ss_dssp HHHHHHHHHHHSSTTCCSEECCBGGGHHHHHHHHHHHHHTTCCC------CEEE----EBCCCCCTTCSSCCCSTTCGG-
T ss_pred hHHHHHHHHHHHhcCCCcEEEeccChHHHHHHHHHHHHHhCCCC------ceee----cCccccCCCCcccccccCCCC-
Confidence 999999999999 99999999999999999999999999753 4433 479999998776899999975
Q ss_pred CCcEeccCCHHHHHHHhhhhccCCCCccccCCCCCcchhhHHHHHHh-------------cCCCCHHHHHHHHhCCChhH
Q psy3680 237 NSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSNLITLHAL-------------CTNQLPQDICTQVKHLNTGQ 303 (422)
Q Consensus 237 ~s~I~L~Dsp~~I~kKI~~A~tD~~~~~~~~p~~~p~~~~l~~~~~~-------------~t~~~~eei~~~~~~~~~~d 303 (422)
|+|||+|+|++|++||++|+||+.. + + +.++.|+.. +++.++++++++|.+++|++
T Consensus 240 -~~I~L~d~p~~i~kKI~ka~td~~~-----~----~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~el~~~~~~~~~~~ 308 (348)
T 2j5b_A 240 -GAIFMDDTEQEVSEKISRAYCTDET-----F----D-NPIFEYIKYLLLRWFGTLNLCGKIYTDIESIQEDFSSMNKRE 308 (348)
T ss_dssp -GSCBTTCCHHHHHHHHHHSCCCSSS-----T----T-CHHHHHHHHTHHHHHSCEEETTEEESSHHHHHHHHTTSCHHH
T ss_pred -CeEeecCCHHHHHHHHhcccCCCCC-----C----C-CchHhHHHHhhhhhhcccccccCCcchHHHHHHHHcccCHHH
Confidence 6999999999999999999999842 2 2 223444332 35678999999999999999
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHH
Q psy3680 304 YKLLLADVLVEKFKPIRDEIEYL 326 (422)
Q Consensus 304 lK~~Lae~i~~~l~pir~~~~~l 326 (422)
+|++||++|+++|+|||++|++.
T Consensus 309 ~K~~la~~l~~~l~pir~~~~~~ 331 (348)
T 2j5b_A 309 LKTDVANYINTIIDLVREHFKKP 331 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999765
No 16
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=100.00 E-value=6.1e-70 Score=561.47 Aligned_cols=335 Identities=20% Similarity=0.212 Sum_probs=269.4
Q ss_pred ccchhHHHHHhhhhcccchhhhhhhhcc-ccCCCcEEEEeecCC-CccchhhHHHHHHHHHHHHH-cCCcEEEEeeCcee
Q psy3680 3 RFKAHLLLTHMKKFVNSSGQQIRHYSDH-KISFPQRIFSGIQPT-GTLHLGNYFGAVQTWSALQN-KGEDVIFCIVDLHS 79 (422)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~i~tGi~PT-G~lHLGny~g~i~~~~~lq~-~g~~~~ilIaD~hA 79 (422)
|+|||..|..++|++..+.+.++.+++. +++++.+||+||+|| |+||||||++++. ..+||+ .||+++|+|||+||
T Consensus 69 ~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~g~~~~vy~G~dPTag~LHLGh~v~~~~-l~~lQ~~~g~~~i~lI~D~ta 147 (432)
T 2ip1_A 69 QVTGREPHHFLRKGLFFSERDFTKILDLYEQGKPFFLYTGRGPSSDSMHLGHMIPFVF-TKWLQEVFDVPLVIELTDDEK 147 (432)
T ss_dssp HHHSSCCCHHHHTTSEEEEESHHHHHHHHHHTCCCEEEEEECCCSSCCBGGGHHHHHH-HHHHHHHHTCCEEEEECHHHH
T ss_pred HhhCCccHHHHhCCCcccCCCHHHHHHHHhcCCCeEEEEeecCCCCCccHHHHHHHHH-HHHHHHHcCCeEEEEEecccc
Confidence 4567777888999998888665555543 467899999999999 7999999999753 445998 89999999999999
Q ss_pred ec-cC-CCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCc--chhHHHHHHhhccchhhhhcchhHHHHhhhcCCCCc
Q psy3680 80 IT-IK-QKHKDLKENIQLMAASLLACGIDPQKSILFQQSQVP--EHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPT 155 (422)
Q Consensus 80 lt-~~-~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~--e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~~~~~~ 155 (422)
++ ++ .+++.+++++.+++++|+|+|+||++++||+||+|+ ++.++.|. +++|....+++.+....+++++
T Consensus 148 ~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp~k~~i~~nSd~~~~~~~~~~~~------v~rm~~~~~~k~r~~~~~~~s~ 221 (432)
T 2ip1_A 148 FLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVR------VSRQITGSTAKAVFGFNDSDCI 221 (432)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHCSHHHHHHHHH------HHTSCCHHHHHHTTCCCTTSCH
T ss_pred eeCCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCchhhhhhHHHHHHH------HHhhhcHHHHHHHhCCCCCCch
Confidence 88 54 689999999999999999999999999999999998 56666663 4555555555544432367899
Q ss_pred cchhhHHHhhhhhhc-----------cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCC
Q psy3680 156 GLFLYPVLQAADILL-----------YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKD 224 (422)
Q Consensus 156 gl~~YPvLqAaDil~-----------~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~ 224 (422)
|+|+||+||||||++ ++|++||||.||++|++++||+|+||| ++.|..+. +++||||+|
T Consensus 222 g~f~YPlLQAaDil~l~~d~~~~~~~~~~~lvp~G~DQ~~~i~l~Rdla~r~~------~~~p~~l~----~~ll~gLdG 291 (432)
T 2ip1_A 222 GKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFRVCRDVADKLK------YSKPALLH----SRFFPALQG 291 (432)
T ss_dssp HHHHTHHHHHHTTSGGGCTTTTCCCTTCCEEEEEEGGGHHHHHHHHHHHHHHT------SCCCEEEE----ECCCCCTTC
T ss_pred hhhhHHHHHHHHHHHhccchhhcccCCCceEEEeccCcHHHHHHHHHHHHHhC------CCCceeec----cccccCCCC
Confidence 999999999999999 679999999999999999999999999 35777643 899999987
Q ss_pred CCcccccCCCCCCCcEeccCCHHHHHHHhhh-hccCCCCcccc--CCCCCcchhhHHHHHHhcC--CCCHHHHHHHHh-C
Q psy3680 225 PSKKMSKSDLDSNSKIEITDPPEVIVRKCKK-ALTDCTSAVTY--DPENRPAVSNLITLHALCT--NQLPQDICTQVK-H 298 (422)
Q Consensus 225 ~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~-A~tD~~~~~~~--~p~~~p~~~~l~~~~~~~t--~~~~eei~~~~~-~ 298 (422)
+++|||||++| ++|||+|+|++|++||++ |+||+...... .++++|+++++++|+..|+ ..++++++++|. +
T Consensus 292 ~~~KMSKS~~n--saI~L~d~p~~i~~KI~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~f~~~~~eieel~~~~~~G 369 (432)
T 2ip1_A 292 STTKMSASDDT--TAIFMTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSG 369 (432)
T ss_dssp --------CGG--GCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred CccccCCCCCC--CeEeccCCHHHHHHHhhhhcccCCccchhhccccCCCchHHHHHHHHHHHCCCHhHHHHHHHHHHcC
Confidence 65899999987 799999999999999999 99998532111 1236678889999999884 345677778886 3
Q ss_pred -CChhHHHHHHHHHHHhhcCcHHHHHHHHhcC----HHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3680 299 -LNTGQYKLLLADVLVEKFKPIRDEIEYLMKS----KEHLEKVLLDGSIRAQAIAVETWDEVK 356 (422)
Q Consensus 299 -~~~~dlK~~Lae~i~~~l~pir~~~~~l~~~----~~~l~~iL~~Ga~kAr~iA~~tl~~vr 356 (422)
++++++|+.||+.|+++++|+|++|++++++ +.++++++.+|+++||++|.+||++|+
T Consensus 370 ~~~~~~~K~~La~~i~~~l~~~rer~~~~~~~~~~~~~~~~~~~~~g~~~a~~~a~~t~~~v~ 432 (432)
T 2ip1_A 370 ELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKLVWGEKERLVAPKPKTKQEKK 432 (432)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHSCCCCCCSCSCCSSCCC--------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999888 888999999999999999999999985
No 17
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=3.3e-67 Score=567.34 Aligned_cols=351 Identities=20% Similarity=0.245 Sum_probs=283.8
Q ss_pred hhhhhhhccccCCCcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeec-c--CCCHHHHHHHHHHHHH
Q psy3680 22 QQIRHYSDHKISFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSIT-I--KQKHKDLKENIQLMAA 98 (422)
Q Consensus 22 ~~i~~~~~~~~~~~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt-~--~~~~~~i~~~~~~i~a 98 (422)
+.|+.++ +++++++||+||+|||+|||||++....+|++||++||+++|+|||+||+| + +.+++++++|+.++++
T Consensus 29 ~eL~~~L--~~~~~~~vy~G~~PTg~lHLG~~v~~~~~~~~lQ~~G~~~~~lIaD~ha~~~d~~~~~~e~i~~~~~~~~~ 106 (690)
T 3p0j_A 29 SELRNLI--EKKPLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIE 106 (690)
T ss_dssp HHHHHHH--HHCTTEEEEEEECCCSCCBHHHHHHHHHHHHHHHHTTEEEEEEECCGGGGGGCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHH--hcCCCceEEeeecCCCcchhHhhHHHHHHHHHHHHCCCcEEEEEeeeEEEecCCCcchHHHHHHHHHHHHH
Confidence 4677777 467789999999999999999965433368899999999999999999999 3 4699999999999999
Q ss_pred HHHHcCCCCCceEEEEcCC-CcchhHHHHHH----hhccchhhhhcchhHHHHhhhcCCCCccchhhHHHhhhhhhccCc
Q psy3680 99 SLLACGIDPQKSILFQQSQ-VPEHTQLAWVL----TCLCTVNRLNHMPTYVEKCAELKQSPTGLFLYPVLQAADILLYKA 173 (422)
Q Consensus 99 ~~lA~Gldp~k~~i~~qSd-i~e~~el~w~l----~~~~~~~~l~r~~~~K~k~~~~~~~~~gl~~YPvLqAaDil~~~a 173 (422)
+|+|+|+||+|++||+||+ ++++.+++|.+ ++++|+++|+|+++++.|.. .++++|+|+||+||||||++|+|
T Consensus 107 ~~lA~GlDp~k~~i~~qS~~v~~~~~l~~~~~~~i~~~~tv~~m~~~~~~~~r~~--~~i~~g~f~YPlLQAaDil~~~a 184 (690)
T 3p0j_A 107 VWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKTE--GTLTAAQVLYPLMQCCDIFFLKA 184 (690)
T ss_dssp HHHHTTCCGGGEEEEEHHHHHTTSHHHHHHHHHHHHHTSCHHHHHTTC---------CCCCCSCSSHHHHHHHHHHHTTC
T ss_pred HHHHcCCChHHeEEEechHHHHhhHHHHHHHHHHHHhhCCHHHHHhhhhhhhhcc--CCCchhhHhhHHHHHHHHHhhCC
Confidence 9999999999999999999 58899999976 45899999999999998775 34999999999999999999999
Q ss_pred cEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHHHHh
Q psy3680 174 THIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKC 253 (422)
Q Consensus 174 ~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI 253 (422)
|+||||.||+||+++|||+|+|||+.|+ |..+ .+++||||+||.+|||||++| |+|||+|+|++|++||
T Consensus 185 d~vpvG~DQ~~~l~l~Rdla~r~n~~~~-----p~~l----~~~~l~gL~dG~~KMSKS~~~--~~I~L~D~p~~i~kKI 253 (690)
T 3p0j_A 185 DICQLGLDQRKVNMLAREYCDLIGRKLK-----PVIL----SHHMLAGLKQGQAKMSKSDPD--SAIFMEDTEEDVARKI 253 (690)
T ss_dssp SEECCBGGGHHHHHHHHHHHHHTTCCCC-----CEEE----EBCCCCCSSTTCSSCBTTBGG--GSCBTTCCHHHHHHHH
T ss_pred CEEeccccHHHHHHHHHHHHHHhCCCCC-----ceEe----ecCeeecCCCCCcCCCCCCCC--CeeeccCCHHHHHHHH
Confidence 9999999999999999999999998643 3332 478999997666899999985 6999999999999999
Q ss_pred hhhccCCCCcc---ccCCCC---CcchhhHHHHHHhcC--------------CCCHHHHHHHHh--CCChhHHHHHHHHH
Q psy3680 254 KKALTDCTSAV---TYDPEN---RPAVSNLITLHALCT--------------NQLPQDICTQVK--HLNTGQYKLLLADV 311 (422)
Q Consensus 254 ~~A~tD~~~~~---~~~p~~---~p~~~~l~~~~~~~t--------------~~~~eei~~~~~--~~~~~dlK~~Lae~ 311 (422)
++|+||+...+ ..+|+. .++.+++++|+..+. +.++++++++|. +++|+++|++|+++
T Consensus 254 ~~A~td~~~~~~~~~~d~g~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~eel~~~y~~G~l~~~dlK~~lae~ 333 (690)
T 3p0j_A 254 RQAYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTTYATYEDLEQAFVSDEVSEDALKSCLIDE 333 (690)
T ss_dssp HTSCCCSSCCCCCCCCTTCCCCCCSSCCHHHHHHHHTTTTSTTCCEEETTEEESSHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HhCcCCCcccccccccCCCCcccCCCCchHHHHHHHhhcccccccccccCCCcchHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999986421 123322 157889999999763 358999999997 48999999999999
Q ss_pred HHhhcCcHHHHHHHHhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCccccccCCccCCCC-CCCccceeEeEecC
Q psy3680 312 LVEKFKPIRDEIEYLMKSKEHLEKVLLDGSIRAQAIAVETWDEVKSAAVGGILTAFGQGTYLGTP-EMDGLLLVSYRWAD 390 (422)
Q Consensus 312 i~~~l~pir~~~~~l~~~~~~l~~iL~~Ga~kAr~iA~~tl~~vr~avgl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 390 (422)
|+++|+|+|++|+++.++++++++|+.-.. ..+. +.+ ..+ ..+ ....++=|.|--+.
T Consensus 334 i~~~L~Pirer~~~~~~~~~~l~~v~~~~~---~~~~--------~~~-----~~~------~~~~~~~~~l~~~~~ps~ 391 (690)
T 3p0j_A 334 VNALLEPVRQHFASNEEAHELLEAVKSYRK---DGAT--------LPL-----AET------ALPAAPAKPHACMWMPAL 391 (690)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHTCC---C------------------------------CCCCSSCEEEEECCCC
T ss_pred HHHHHHHHHHHHHhchhhHHHHHHHHHHhc---CCCC--------CCC-----ccc------ccCCCCCCcceEEecCCC
Confidence 999999999999998888887777654211 0111 111 001 111 24455557888899
Q ss_pred CcEEEeecchhhhh-hhhhhc
Q psy3680 391 YQLTLAFDQVPIWG-LLKWMG 410 (422)
Q Consensus 391 ~~~~~~~~~~~~~~-~~~~~~ 410 (422)
|++|||.. ||+.+ +.+|.-
T Consensus 392 g~lHLGh~-v~~~k~l~~~~~ 411 (690)
T 3p0j_A 392 LKVPLDVA-EGMIKVTKDFIA 411 (690)
T ss_dssp SSCBHHHH-HHHHHHHHHHHH
T ss_pred CCcccchH-HHHHHHHHHHHH
Confidence 99999999 99999 999863
No 18
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=100.00 E-value=5e-67 Score=534.93 Aligned_cols=305 Identities=15% Similarity=0.166 Sum_probs=264.3
Q ss_pred ccchhHHHHHhhhhcccchhhhhhhhcc-ccCCCcEEEEeecCCC-ccchhhHHHH-HHHHHHHHHc-CCcEEEEeeCce
Q psy3680 3 RFKAHLLLTHMKKFVNSSGQQIRHYSDH-KISFPQRIFSGIQPTG-TLHLGNYFGA-VQTWSALQNK-GEDVIFCIVDLH 78 (422)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~i~tGi~PTG-~lHLGny~g~-i~~~~~lq~~-g~~~~ilIaD~h 78 (422)
|+||+..+..++|++..+.++++.+++. +++++.+||+|++||| ++|||||+|+ +.+| ||++ |+.++|+|||+|
T Consensus 68 ~~~~~~~h~~~~RG~i~~~~d~~~ll~~~~~~~p~~vy~G~~PTg~~lHLGh~v~~~~~~~--lQ~~~g~~~~i~IaD~~ 145 (406)
T 3tze_A 68 KLSGKPAHYFFRRGIVFAHRDFNLLLDEIANNRPFYLYTGRGPSSKTMHIGHTIPFLLCKY--MQDAFKIRLVIQITDDE 145 (406)
T ss_dssp HHHSSCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEECCCSSCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHH
T ss_pred HHhCCCcHHHHhCCCeeccccHHHHHHHHhcCCCeEEEEeeCCCCCcccHHHHHHHHHHHH--HHHhcCCcEEEEeeChH
Confidence 5678888999999999999888877765 4688999999999999 9999999997 3455 9998 899999999999
Q ss_pred eec-cCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCcchhHHHHHHhhccchhhhhcchhHHHHhhhc---CCCC
Q psy3680 79 SIT-IKQKHKDLKENIQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAEL---KQSP 154 (422)
Q Consensus 79 Alt-~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~---~~~~ 154 (422)
|++ ++.+++++++|+++++++|+|+|+||++++||.||+|++ .|..++++|.|++++++..+.. ++++
T Consensus 146 a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~~i~~qs~~~~--------~~~~~~~~L~r~~t~~~~~~~~g~~~~~s 217 (406)
T 3tze_A 146 KFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYIFSNVEASH--------HFEENILKISKTINLNEAIKVFGFDMSSN 217 (406)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHGG--------GGHHHHHHHHHTCBHHHHHHHHCCCTTSB
T ss_pred HHcCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEeccHhHH--------HHHHHHHHHHhhCCHHHHHHhhCCCCCCc
Confidence 986 678999999999999999999999999999999999987 3445677888888888776543 5799
Q ss_pred ccchhhHHHhhhhhh--------ccCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCC
Q psy3680 155 TGLFLYPVLQAADIL--------LYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPS 226 (422)
Q Consensus 155 ~gl~~YPvLqAaDil--------~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~ 226 (422)
+|+|+||+|||||++ .+++|+||||.||++|+++|||+|+||| ++.|..+. +++||||+|++
T Consensus 218 ~g~f~YPlLQaaD~~~~~~p~il~~~a~lvpvG~DQ~~~i~l~Rdla~r~~------~~~p~~l~----~~~l~gLdG~~ 287 (406)
T 3tze_A 218 IGQVGFPAKEIAPCFSSSFRFIGKGAMCLVPAAVDQDPFFRLARDKAKALG------EKKPSSIY----VSLLPDLKGVN 287 (406)
T ss_dssp HHHHHHHHHHHGGGSGGGSTTSCTTCEEEEEEEGGGHHHHHHHHHHHHHHT------CCCCEEEE----ECCCCCTTSCC
T ss_pred chhhhhHHHhhhhhhccchHHhccCCCeEEeeccchHHHHHHHHHHHHHcC------CCCceeec----cCcccCCCCCC
Confidence 999999999999955 4689999999999999999999999999 34666554 89999997654
Q ss_pred cccccCCCCCCCcEeccCCHHHHHHHhhh-hccCCCCcccc--CCCCCcchhhHHHHHHhcC--CCCHHHHHHHHh--CC
Q psy3680 227 KKMSKSDLDSNSKIEITDPPEVIVRKCKK-ALTDCTSAVTY--DPENRPAVSNLITLHALCT--NQLPQDICTQVK--HL 299 (422)
Q Consensus 227 ~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~-A~tD~~~~~~~--~p~~~p~~~~l~~~~~~~t--~~~~eei~~~~~--~~ 299 (422)
+|||||++| |+|||+|+|++|++||++ |+||+...++. +++++|+++|+++||++|+ +.++++++++|. ++
T Consensus 288 ~KMSKS~~~--~~I~L~D~p~~I~kKI~k~A~td~~~~~e~~~~~~g~p~v~~l~~~~~~~~~~~~~~eei~~~y~~G~l 365 (406)
T 3tze_A 288 RKMSASDPN--SSIYLDDAQDTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEI 365 (406)
T ss_dssp CCSSCSCGG--GSCBTTCCHHHHHHHHHHHCCCCCCCC-------CCCGGGCHHHHHHHHHCCCHHHHHHHHHHHHTTCS
T ss_pred cCCCCCCCC--CcccCCCCHHHHHHHHHhhccCCCcccccccccCCCCCcccHHHHHHHHHcCCcchHHHHHHHHhcCCC
Confidence 799999975 799999999999999999 99999765443 3458899999999999997 346888889996 48
Q ss_pred ChhHHHHHHHHHHHhhcCcHHHHHHHHhcC
Q psy3680 300 NTGQYKLLLADVLVEKFKPIRDEIEYLMKS 329 (422)
Q Consensus 300 ~~~dlK~~Lae~i~~~l~pir~~~~~l~~~ 329 (422)
+|+++|+.|+++|+++|+|+|++|+++++|
T Consensus 366 ~~g~lK~~Lae~i~~~l~pirer~~~~~~d 395 (406)
T 3tze_A 366 TSKEMKEKCVVVIQEFVSRYQESRKRVTDD 395 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999988754
No 19
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=1.7e-65 Score=528.00 Aligned_cols=313 Identities=19% Similarity=0.250 Sum_probs=270.2
Q ss_pred ccchhHHHHHhhhhcccchhhhhhhhcc-ccCCCcEEEEeecCC-CccchhhHHHHHHHHHHHHHc-CCcEEEEeeCcee
Q psy3680 3 RFKAHLLLTHMKKFVNSSGQQIRHYSDH-KISFPQRIFSGIQPT-GTLHLGNYFGAVQTWSALQNK-GEDVIFCIVDLHS 79 (422)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~i~tGi~PT-G~lHLGny~g~i~~~~~lq~~-g~~~~ilIaD~hA 79 (422)
|+||+..|..++|++..+.++++.+++. +++++.+||+|++|| |+||||||+|++ ...+||++ |+.++|+|||+|+
T Consensus 58 ~~~~~~~h~~l~RG~i~~~~dl~~ll~~l~~g~p~~vytG~dPTagsLHLGH~v~~~-~l~~lQ~~~g~~v~I~IgD~~a 136 (451)
T 3foc_A 58 TVTGTKAHPMLRRGLFYAHRDFEEFLSYYEKGHPIYIYTGRGPSSGALHLGHLLPFI-FTKYLQDAFKCYVVIQITDDEK 136 (451)
T ss_dssp HHHTCCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEECCCSSCCBHHHHHHHH-HHHHHHHHHTCEEEEEECHHHH
T ss_pred HHhCCChHHHHhCCCccccccHHHHHHHHhcCCCeEEEecCCCCCCCccHHHHHHHH-HHHHHHHccCceEEEEeeCcHH
Confidence 4678888899999999888877776654 467899999999999 799999999976 23349998 7899999999999
Q ss_pred ec-c-CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCcc---hhHHHHHHhhccchhhhhcchhHHHHhhhcCCCC
Q psy3680 80 IT-I-KQKHKDLKENIQLMAASLLACGIDPQKSILFQQSQVPE---HTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSP 154 (422)
Q Consensus 80 lt-~-~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~e---~~el~w~l~~~~~~~~l~r~~~~K~k~~~~~~~~ 154 (422)
++ . ..++++|++|+++++++|+|+|+||++++||+||+|++ +.++.|.+++++|+++|.++..++ ++++
T Consensus 137 ~~~r~~lt~E~I~~n~~~~~~~~lA~GlDpekt~i~~nSd~~~~~~~~~~l~~L~r~~Tv~~m~~~~~f~------~~is 210 (451)
T 3foc_A 137 FLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFS------NDAN 210 (451)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHTTSTTHHHHHHHHHHTCCHHHHHHHHCCC------SSSC
T ss_pred hhcccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCchhhcchhHHHHHHHHHhhCCHHHHHhhcccC------CCCc
Confidence 88 4 68999999999999999999999999999999999975 567788899999999999887653 5799
Q ss_pred ccchhhHHHhhhhhhc------------------------------------------cCcc-----------------E
Q psy3680 155 TGLFLYPVLQAADILL------------------------------------------YKAT-----------------H 175 (422)
Q Consensus 155 ~gl~~YPvLqAaDil~------------------------------------------~~a~-----------------~ 175 (422)
+|+|+||+||||||+. |+|+ +
T Consensus 211 ~gef~YPlLQAaDil~~~~d~~~~~~vp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~ 290 (451)
T 3foc_A 211 VGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCL 290 (451)
T ss_dssp HHHHTCHHHHHGGGSGGGGTTSGGGCCBCC-------------------------CCCCHHHHHHHHCGGGGGBCCCEEE
T ss_pred hHHHhhHHHHHHHHHHhhcCCCCccccccccccccchhhhhhhhhhccccccchhhhhhhcccchhhcccccccccccce
Confidence 9999999999999983 3334 9
Q ss_pred EeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHHHHhhh
Q psy3680 176 IPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKK 255 (422)
Q Consensus 176 vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~ 255 (422)
||||.||+||+|+|||+|+|||+ +.|..+ .+++||||+|+++|||||++| |+|+|+|+|++|++|||+
T Consensus 291 VPvG~DQ~~hlel~Rdia~rfn~------~~p~~~----~~~~l~gLdG~~~KMSKS~~n--s~I~l~D~p~~I~kKI~k 358 (451)
T 3foc_A 291 IASGIEQDPYFRLARDLAPRMGH------PKNAYL----LGKFLPGLQGSGTKMSASDPN--SAIYLTDTPAQIKNKINR 358 (451)
T ss_dssp EEECTTTHHHHHHHHHHTTTTTS------CCCEEE----EECCCCBTTBTTCCCCTTCGG--GSCBTTCCHHHHHHHHHH
T ss_pred eeeecchHHHHHHHHHHHHHhCC------CCCeee----cCCcccCCCCCCCccCCCCCC--CeeeecCCHHHHHHHHhh
Confidence 99999999999999999999994 456544 389999998766799999987 799999999999999999
Q ss_pred -hccCCCCcccc--CCCCCcchhhHHHHHHhcC--CCCHHHHHHHHh--CCChhHHHHHHHHHHHhhcCcHHHHHHHHhc
Q psy3680 256 -ALTDCTSAVTY--DPENRPAVSNLITLHALCT--NQLPQDICTQVK--HLNTGQYKLLLADVLVEKFKPIRDEIEYLMK 328 (422)
Q Consensus 256 -A~tD~~~~~~~--~p~~~p~~~~l~~~~~~~t--~~~~eei~~~~~--~~~~~dlK~~Lae~i~~~l~pir~~~~~l~~ 328 (422)
|+||+...++. +++++|+++++++||.+|+ +.++++++++|. +++|+++|+.|++.|+++|+|+|+||+++++
T Consensus 359 ~A~Td~~~~~~~~~~~~g~p~~~~v~~~l~~f~~~~~~~eel~~~y~~G~l~~g~lK~~Lae~i~~~l~pirer~~~l~~ 438 (451)
T 3foc_A 359 YAFSGGRDTEEEHRAFGADLSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEHAERRDKVDT 438 (451)
T ss_dssp HSCCCSCSSHHHHHTTCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCH
T ss_pred hccCCCCccchhcccCCCCcchhhHHHHHHHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998654432 4568899999999999995 446788888996 4899999999999999999999999998865
Q ss_pred CHHHHHHH
Q psy3680 329 SKEHLEKV 336 (422)
Q Consensus 329 ~~~~l~~i 336 (422)
+.|++.
T Consensus 439 --d~v~~f 444 (451)
T 3foc_A 439 --TMIESF 444 (451)
T ss_dssp --HHHHHH
T ss_pred --HHHHHh
Confidence 345554
No 20
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=1.5e-64 Score=521.21 Aligned_cols=310 Identities=22% Similarity=0.219 Sum_probs=262.1
Q ss_pred HHHHhhhhc--ccchhhhhhhhccccCCCcEEEEeecCCC-ccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeec-cC-
Q psy3680 9 LLTHMKKFV--NSSGQQIRHYSDHKISFPQRIFSGIQPTG-TLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSIT-IK- 83 (422)
Q Consensus 9 ~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~i~tGi~PTG-~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt-~~- 83 (422)
.+..++|++ ..+.+.++.+++ .+++.+||+||+||| +||||||++ +.+|++||++||+++++|||+||+| ++
T Consensus 11 ~~~li~Rg~~e~~~~~~L~~~L~--~~~~~~vy~G~dPTg~sLHlGh~v~-l~~l~~lQ~~G~~~i~lIgD~ta~igdps 87 (432)
T 1h3f_A 11 ALALLKRGAEEIVPEEELLAKLK--EGRPLTVKLGADPTRPDLHLGHAVV-LRKMRQFQELGHKVVLIIGDFTGMIGDPS 87 (432)
T ss_dssp HHHHHHTTCSEEETHHHHHHHHH--TCSCCEEEEEECTTCCSCBHHHHHH-HHHHHHHHHTTCEEEEEECCCC-------
T ss_pred HHHHHHcchHHhCCHHHHHHHHh--cCCCcEEEEcccCCCCCCchhhHHH-HHHHHHHHHCCCCEEEEEccceEEecCCC
Confidence 344555555 225678888883 578999999999999 699999995 8899999999999999999999999 55
Q ss_pred --------CCHHHHHHHHHHHHHHHHHcCCC--CCceEEEEcCCCcchhHHHHHH--hhccchhhhhcchhHHHHhhhcC
Q psy3680 84 --------QKHKDLKENIQLMAASLLACGID--PQKSILFQQSQVPEHTQLAWVL--TCLCTVNRLNHMPTYVEKCAELK 151 (422)
Q Consensus 84 --------~~~~~i~~~~~~i~a~~lA~Gld--p~k~~i~~qSdi~e~~el~w~l--~~~~~~~~l~r~~~~K~k~~~~~ 151 (422)
.+++++++|+..+.+++. +|+| |++++||+||+|+++..+.|++ +|++++++|.++.+||.|....+
T Consensus 88 gk~~~R~~l~~e~i~~n~~~~~~ql~-~~ld~~p~k~~i~~nSd~~~~~~~~~~l~l~~~~tv~~ml~~~~~k~r~~~~~ 166 (432)
T 1h3f_A 88 GRSKTRPPLTLEETRENAKTYVAQAG-KILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEAGI 166 (432)
T ss_dssp --------------HHHHHHHHHHHT-TTSCCCTTTEEEEETHHHHTTCBHHHHHHHHTTSBHHHHTTSHHHHHHHHTTC
T ss_pred CcccccccCCHHHHHHHHHHHHHHHH-HHhcCCCCceEEEECCcccccCcHHHHHHHhCcCcHHHHHhhhhHHHHhhcCC
Confidence 457889999888777765 8999 9999999999998887777765 89999999999999999987667
Q ss_pred CCCccchhhHHHhhhhhhccCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCccccc
Q psy3680 152 QSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSK 231 (422)
Q Consensus 152 ~~~~gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSK 231 (422)
++++|+|+||+||||||++++||+||||.|||+|++++||+++|||.. |...+ .+++||+++ |.+||||
T Consensus 167 ~is~~ef~YPlLQaaDil~l~~~l~~gG~DQ~~ni~l~rdlarr~~~~-------~~~~l---t~pll~gld-G~~KMSK 235 (432)
T 1h3f_A 167 PISLHELLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQS-------PQVCF---LMPLLVGLD-GREKMSK 235 (432)
T ss_dssp CCBGGGGTHHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHHHHHTTCC-------CCEEE---EECCCBCTT-SSSBCCG
T ss_pred CCCccccchhhHHhhhhhhcCccEEEechHHHHHHHHHHHHHHHhCCC-------CceEe---ecccccCCC-CccccCc
Confidence 899999999999999999999999999999999999999999999853 44554 488999996 4469999
Q ss_pred CCCCCCCcEeccCCHHHHHHHhhhhccCCCCccccCCCCCcchhhHHHHHHhcCCCCHHHHHHHHhCCChhHHHHHHHHH
Q psy3680 232 SDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADV 311 (422)
Q Consensus 232 S~~n~~s~I~L~Dsp~~I~kKI~~A~tD~~~~~~~~p~~~p~~~~l~~~~~~~t~~~~eei~~~~~~~~~~dlK~~Lae~ 311 (422)
|++| +|||+|+|+++++||+++.+| +++.|++.|++.+.+|+++.+.+ +|+++|+.||++
T Consensus 236 S~~n---~I~L~dsp~~i~~Ki~~~~d~----------------~v~~~l~~ft~~~~eei~~~~~~-~~~~~K~~LA~~ 295 (432)
T 1h3f_A 236 SLDN---YIGLTEPPEAMFKKLMRVPDP----------------LLPSYFRLLTDLEEEEIEALLKA-GPVPAHRVLARL 295 (432)
T ss_dssp GGTC---CCBTTSCHHHHHHHHHTSCGG----------------GHHHHHHHHCCCCHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred CCCC---eeCCCCCHHHHHHHHhCCCcc----------------HHHHHHHHcCCCCHHHHHHHHhh-ChHHHHHHHHHH
Confidence 9986 999999999999999997332 57899999999999999998877 999999999999
Q ss_pred HHhhcC----cHHHHHHHHhcCHHHHHHHHHh----hHHHHHHHHHHHHHHH
Q psy3680 312 LVEKFK----PIRDEIEYLMKSKEHLEKVLLD----GSIRAQAIAVETWDEV 355 (422)
Q Consensus 312 i~~~l~----pir~~~~~l~~~~~~l~~iL~~----Ga~kAr~iA~~tl~~v 355 (422)
|+++++ |+|++|+++++ +++|++||.. |.+.|++ |.+..+.+
T Consensus 296 i~~~l~~~~~pirerr~~~~~-~~~v~~il~~~~~~g~~~a~~-a~~~~~~~ 345 (432)
T 1h3f_A 296 LTAAYALPQIPPRIDRAFYES-LGYAWEAFGRDKEAGPEEVRR-AEARYDEV 345 (432)
T ss_dssp HHHHHHSSSCCSCCSHHHHHH-TTCCGGGTTCCTTCSCHHHHH-HHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHhhc-hHHHHHHHhhccccCHHHHHH-HHHHHHHh
Confidence 999999 99999999999 9999999999 9887754 55555544
No 21
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=100.00 E-value=1.6e-64 Score=513.75 Aligned_cols=309 Identities=14% Similarity=0.169 Sum_probs=263.8
Q ss_pred ccchhHHHHHhhhhcccchhhhhhhhcc-ccCCCcEEEEeecCCCccchhhHHHH-HHHHHHHHHc-CCcEEEEeeCcee
Q psy3680 3 RFKAHLLLTHMKKFVNSSGQQIRHYSDH-KISFPQRIFSGIQPTGTLHLGNYFGA-VQTWSALQNK-GEDVIFCIVDLHS 79 (422)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~i~tGi~PTG~lHLGny~g~-i~~~~~lq~~-g~~~~ilIaD~hA 79 (422)
|+||+..+..++|++..+.++++.+++. +++++.+||+||+|||.+|||||+|+ +.+| ||++ |+.++|+|+|+|+
T Consensus 49 ~~~~~~~h~~l~RG~i~~~~d~~~ll~~~~~~~~~~vysG~~PTG~lHLGh~v~~~~~~~--lQ~~~g~~v~i~I~D~~a 126 (386)
T 3hzr_A 49 KLSGKAPHHYLSRGVFLAEKSLDKFLDDVEAKKPTFIFIQKYPQKEVALEEYITLEFARY--LQDAFNIQVIIQILDDIK 126 (386)
T ss_dssp HHHTSCCCHHHHTTSEEEESSHHHHHHHHHTTCCEEEEEEECCCSSCBGGGHHHHHHHHH--HHHHHCCEEEEEECHHHH
T ss_pred HHhCCCchHHHHCcCccccccHHHHHHHHhcCCCeEEEeccCCCCCccHHHHHHHHHHHH--HHHhcCCeEEEEeCchHH
Confidence 5688888999999999998887766654 47889999999999999999999998 4566 9996 8999999999999
Q ss_pred ec-cCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCcchhHHHHHHhhccchhhhhcchhHHHHhhhc---CCCCc
Q psy3680 80 IT-IKQKHKDLKENIQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAEL---KQSPT 155 (422)
Q Consensus 80 lt-~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~---~~~~~ 155 (422)
.+ .+.+++++++|+++++++|+|+|+||+|++||.||+|++ .|..+++++.|++++++..+.. +++++
T Consensus 127 ~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~--------~~~~~~~~l~r~~t~~~~~~~~~~~~~~~~ 198 (386)
T 3hzr_A 127 VLNREATINEASKMSNDLMKYILAFGFNEDKTFIYTDYQYFG--------KMYRTISLVEKATAYNVVQPFFNFEYSDNI 198 (386)
T ss_dssp HHTTSCCHHHHHHHHHHHHHHHHHTCCCGGGEEEEEHHHHHH--------HHHHHHHHHHHHCBHHHHTTTSCCCSSSBH
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEeccHHHH--------HHHHHHHHHHhhccHHHHHHHhCCCCCCch
Confidence 88 458999999999999999999999999999999999987 5667788899999999876543 46899
Q ss_pred cchhhHHHhhhhhh--------ccC-ccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCC
Q psy3680 156 GLFLYPVLQAADIL--------LYK-ATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPS 226 (422)
Q Consensus 156 gl~~YPvLqAaDil--------~~~-a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~ 226 (422)
|+|+||+|||||++ .++ +++||||.||+||+++|||+|+|||+ ++|. ++ .+++||||+|+
T Consensus 199 g~f~YP~LQaaD~~~~~~pdil~~~~a~~VpvG~DQ~~hl~l~Rdla~r~n~------~~p~-~l---~~~~l~gLdG~- 267 (386)
T 3hzr_A 199 GKLASPSIMTASMFSQSYSHFFSSPARCLVLDSIKNVQFHSIIDQIATTLNF------IQPT-VL---FHKMVPLLSGV- 267 (386)
T ss_dssp HHHHHHHHHHHTTSGGGCTTTCSSCCEEEEEEEGGGHHHHHHHHHHHHHHTC------CCCE-EE---EECCCCCTTCT-
T ss_pred hhHhhHHHHHHHHhhhcchHhhCCCCccccccccchHHHHHHHHHHHHHcCC------CCce-Ee---ecCeeeCCCCC-
Confidence 99999999999776 456 99999999999999999999999995 4663 33 48999999864
Q ss_pred cccccCCCCCCCcEeccCCHHHHHHHhhh-hccCCCCccc--cCCCCCcchhhHHHHHHhcC--CCCHHHHHHHHh--CC
Q psy3680 227 KKMSKSDLDSNSKIEITDPPEVIVRKCKK-ALTDCTSAVT--YDPENRPAVSNLITLHALCT--NQLPQDICTQVK--HL 299 (422)
Q Consensus 227 ~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~-A~tD~~~~~~--~~p~~~p~~~~l~~~~~~~t--~~~~eei~~~~~--~~ 299 (422)
+|||||++| |+|+|+|+|++|++||++ |+|+++...+ ...+++|+++++++|+..|+ ..++++++++|. ++
T Consensus 268 ~KMSKSd~~--~~I~L~D~p~~i~kKI~k~A~t~g~~Td~~~~~~~g~p~~~~v~~~~~~~~~~~~~~eei~~~~~~G~l 345 (386)
T 3hzr_A 268 TKFDIPSDH--NSILLSDNAKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKYSKGEL 345 (386)
T ss_dssp TCCCCCCTT--TSCBTTCCHHHHHHHHHHTSCCCCCSSHHHHHTTCCCGGGCHHHHHHHHHCSCHHHHHHHHHHHHTTCS
T ss_pred CccCcCCCC--CeeecCCCHHHHHHHHHHhccCCCCCCcccccccCCCCccchHHHHHHHHcCChhhHHHHHHHHHcCCC
Confidence 499999765 799999999999999999 9998753211 12236789999999999996 336788888896 58
Q ss_pred ChhHHHHHHHHHHHhhcCcHHHHHHHHhcCHHHHHHH
Q psy3680 300 NTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKV 336 (422)
Q Consensus 300 ~~~dlK~~Lae~i~~~l~pir~~~~~l~~~~~~l~~i 336 (422)
+|+++|++|+++|+++|+|+|++|+++++ +.|++.
T Consensus 346 ~~g~~K~~lae~i~~~l~pirer~~~~~~--~~~~~~ 380 (386)
T 3hzr_A 346 LSGELKKIVSASMKDFIVAYDAKKKPITT--AYLKAY 380 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCH--HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 99999999999999999999999998764 345544
No 22
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=5.5e-64 Score=501.04 Aligned_cols=286 Identities=21% Similarity=0.288 Sum_probs=246.8
Q ss_pred HHHHhhhhcccchhhhhhhhccccCCCcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccC-CCHH
Q psy3680 9 LLTHMKKFVNSSGQQIRHYSDHKISFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIK-QKHK 87 (422)
Q Consensus 9 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~-~~~~ 87 (422)
+-|.+...++ .+.++.++ +.+++.+||+|++|||++||||+ +++.+|+++|++|++++++|||+||+|.+ .+++
T Consensus 10 ~~rg~~e~~~--~~~l~~~l--~~~~~~~vy~G~~PTg~lHlG~l-~~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~~~~ 84 (323)
T 2cyb_A 10 ITRNAEEVVT--EEELRQLI--ETKEKPRAYVGYEPSGEIHLGHM-MTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFE 84 (323)
T ss_dssp HHTTCSEEET--HHHHHHHH--HSCSCCEEEEEECCCSCCBHHHH-HHHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHH
T ss_pred HHcCChhhcC--HHHHHHHH--hCCCCCEEEECcCCCCcchHHHH-HHHHHHHHHHHCCCcEEEEECCceeEcCCCCCHH
Confidence 3334433443 36788787 35778999999999999999986 56899999999999999999999999944 4999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEEcCCCc---chhHHHHHHhhccchhhhhcchhHHHHhhhcCCCCccchhhHHHh
Q psy3680 88 DLKENIQLMAASLLACGIDPQKSILFQQSQVP---EHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGLFLYPVLQ 164 (422)
Q Consensus 88 ~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~---e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~~~~~~gl~~YPvLq 164 (422)
++++++++++++|+|+|+||++++||+||+|+ ++.++.|.++|.+++++|.|+++++.+. .+..++|+|+||+||
T Consensus 85 ~i~~~~~~~~~~~~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~~--~~~~~~g~~~YP~lq 162 (323)
T 2cyb_A 85 EIAEVADYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRR--KEDPMVSQMIYPLMQ 162 (323)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCEEEEGGGTTTSHHHHHHHHHHHHHSBHHHHHHHTTTTCSC--SSSCBTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCccceEEEEcchhccchHHHHHHHHHhCccCHHHHhccchhhccc--cCCCCchhhhhHHHH
Confidence 99999999999999999999999999999996 7888999999999999999988776432 234699999999999
Q ss_pred hhhhhccCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC
Q psy3680 165 AADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD 244 (422)
Q Consensus 165 AaDil~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D 244 (422)
||||+++++|+||||.||++|++++||+++|||+. .|..+. +++||+|+ |+|||||.+ |+|||+|
T Consensus 163 aaD~l~~~~~~v~~G~DQ~~~~~l~rdla~~~~~~------~p~~l~----~pll~~l~--G~KMSKS~~---n~I~l~d 227 (323)
T 2cyb_A 163 ALDIAHLGVDLAVGGIDQRKIHMLARENLPRLGYS------SPVCLH----TPILVGLD--GQKMSSSKG---NYISVRD 227 (323)
T ss_dssp HHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCC------CCEEEE----ECCCBCTT--SSBCCTTTT---CSCBTTC
T ss_pred HHHHHhcCCCEEEechhhHHHHHHHHHHHHhcCCC------CceEEe----cCcccCCC--CCcccCCcC---ceeCCCC
Confidence 99999999999999999999999999999999963 565554 78999996 489999954 5999999
Q ss_pred CHHHHHHHhhhhccCCCCccccCCCCCcchhhHHHHHHhcC--------------------CCCHHHHHHHHhC--CChh
Q psy3680 245 PPEVIVRKCKKALTDCTSAVTYDPENRPAVSNLITLHALCT--------------------NQLPQDICTQVKH--LNTG 302 (422)
Q Consensus 245 sp~~I~kKI~~A~tD~~~~~~~~p~~~p~~~~l~~~~~~~t--------------------~~~~eei~~~~~~--~~~~ 302 (422)
+|++|++||++|+||+.. ++.++++.|++.|. ..++++++++|.+ ++|+
T Consensus 228 ~p~~i~~Ki~~a~td~~~---------~~~~~~~~~~~~~~~p~~~~~~i~~~~~~G~~~~~~~~~~l~~~~~~g~~~~~ 298 (323)
T 2cyb_A 228 PPEEVERKIRKAYCPAGV---------VEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYASFEELAEDFKSGQLHPL 298 (323)
T ss_dssp CHHHHHHHHHTSCCCTTC---------CTTCHHHHHHHHTHHHHHSCEEECCCGGGTCCEEESSHHHHHHHHHHTSSCHH
T ss_pred CHHHHHHHHHhcCCCCCC---------CCcChHHHHHHHHhccccCceeEechhhcCCCCCcccHHHHHHHHhcCCCCHH
Confidence 999999999999999842 23456788887762 3589999999973 8999
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHH
Q psy3680 303 QYKLLLADVLVEKFKPIRDEIEY 325 (422)
Q Consensus 303 dlK~~Lae~i~~~l~pir~~~~~ 325 (422)
++|++|+++|+++|+|+|++|++
T Consensus 299 ~~K~~la~~i~~~l~pir~~~~~ 321 (323)
T 2cyb_A 299 DLKIAVAKYLNMLLEDARKRLGV 321 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999964
No 23
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=100.00 E-value=1.4e-64 Score=515.57 Aligned_cols=315 Identities=16% Similarity=0.192 Sum_probs=248.6
Q ss_pred ccchhHHHHHhhhhcccchhhhhhhhcc-ccCCCcEEEEeecCC-CccchhhHHHHHHHHHHHHHc-CCcEEEEeeCcee
Q psy3680 3 RFKAHLLLTHMKKFVNSSGQQIRHYSDH-KISFPQRIFSGIQPT-GTLHLGNYFGAVQTWSALQNK-GEDVIFCIVDLHS 79 (422)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~i~tGi~PT-G~lHLGny~g~i~~~~~lq~~-g~~~~ilIaD~hA 79 (422)
|+||+..+..++|.+..+.++++.+++. +++++.++|+|++|| |++|||||+|++ ...+||++ |+.++++|||+|+
T Consensus 41 ~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~g~~~~vy~G~~PTa~~lHlGh~v~~~-~~~~lQ~~~~~~v~i~I~D~~~ 119 (393)
T 3hv0_A 41 RLTGQKAHHFFRRNIFLSHRDFEKILDVYEKGELFYLYTGRGPSSESLHVGHLVPFL-FTKYLQDTFKVPLVIQLTDDEK 119 (393)
T ss_dssp HHHSSCCCHHHHTTSEEEEESHHHHHHHHHTTCCCEEEEEECCSSSSCBSTTHHHHH-HHHHHHHHHCCCEEEEECHHHH
T ss_pred HHhCCChHHHHhCCCccccCCHHHHHHHHhcCCCeEEEeCCCCCCCCccHHHHHHHH-HHHHHHHhcCCCeEeeccChHH
Confidence 4577778888999998888877766654 567799999999999 599999999977 34459998 7889999999998
Q ss_pred ec-c-CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCcchh-HHHHHHhhccchhhhhcchhHHHHhhhcCCCCcc
Q psy3680 80 IT-I-KQKHKDLKENIQLMAASLLACGIDPQKSILFQQSQVPEHT-QLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTG 156 (422)
Q Consensus 80 lt-~-~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~e~~-el~w~l~~~~~~~~l~r~~~~K~k~~~~~~~~~g 156 (422)
.+ . ..+++++++|+++++++|+|+|+||++++||+||+|++.. .....++..++++++.+...+ .+++++|
T Consensus 120 ~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~~~~~~~~~~l~r~~t~~~~~~~~~~------~~~~s~g 193 (393)
T 3hv0_A 120 FIFKSNLTLEETHNYAYENMKDIIACGFDPELTFIFTNLEYIAELYPDILRIEKKISCSQIKSIFGF------KDSCNVG 193 (393)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHHHHTTCCCTTTEEEEEHHHHHHHHHHHHHHHHHHSBHHHHHHHHCC------CTTSBHH
T ss_pred HhhccCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEECCHHHHHHHHHHHHHHccCCHHHHHHhhCC------CCCCchh
Confidence 55 4 7899999999999999999999999999999999997632 111225555555555433211 2579999
Q ss_pred chhhHHHhhhhhhc-------c-C---ccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCC
Q psy3680 157 LFLYPVLQAADILL-------Y-K---ATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDP 225 (422)
Q Consensus 157 l~~YPvLqAaDil~-------~-~---a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~ 225 (422)
+|+||+||||||+. + + +++||||.||++|+++|||+|+|+|. +.|..+. +++||||+|+
T Consensus 194 ~f~YPlLQaaDil~~~~p~l~~~~~di~~lvp~G~DQ~~~i~l~Rdla~r~~~------~~p~~l~----~~~l~gLdG~ 263 (393)
T 3hv0_A 194 KFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPRLGY------LKPSSIH----SIFLPSLQGS 263 (393)
T ss_dssp HHHHHHHHHGGGSGGGCHHHHTTCSCCCEEEEEEGGGHHHHHHHHHHTGGGTC------CCCEEEE----ECCCCC----
T ss_pred hHhHHHHHHHHHHhhhhHHHhcccCCCceecccccchHHHHHHHHHHHHHcCC------CCceeec----cCcccCCCCC
Confidence 99999999999963 2 3 37999999999999999999999983 4565543 8999999865
Q ss_pred CcccccCCCCCCCcEeccCCHHHHHHHhhh-hccCCCCccccC--CCCCcchhhHHHHHHhcC--CCCHHHHHHHHh--C
Q psy3680 226 SKKMSKSDLDSNSKIEITDPPEVIVRKCKK-ALTDCTSAVTYD--PENRPAVSNLITLHALCT--NQLPQDICTQVK--H 298 (422)
Q Consensus 226 ~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~-A~tD~~~~~~~~--p~~~p~~~~l~~~~~~~t--~~~~eei~~~~~--~ 298 (422)
++|||||++| |+|||+|+|++|++|||+ |+||+...++.. .+++|+++++++||.+|+ +.++++++++|. +
T Consensus 264 ~~KMSKS~~n--saI~L~D~p~~i~kKI~k~A~td~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~eei~~~y~~G~ 341 (393)
T 3hv0_A 264 QTKMSASVQN--SSIFVNDNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKYSSGE 341 (393)
T ss_dssp ---------C--CCCBTTCCHHHHHHHHHHHSCCCSCSSSCCC---CCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTS
T ss_pred CcCCCCCCCC--CeEeccCCHHHHHHHHHhhccCCCCccccccccCCCCcchhHHHHHHHHHcCChhHHHHHHHHHHcCC
Confidence 5799999987 899999999999999999 999987655443 237788999999999984 457889999996 5
Q ss_pred CChhHHHHHHHHHHHhhcCcHHHHHHHHhcCHHHHHHHHH
Q psy3680 299 LNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVLL 338 (422)
Q Consensus 299 ~~~~dlK~~Lae~i~~~l~pir~~~~~l~~~~~~l~~iL~ 338 (422)
++|+++|+.|++.|+++|+|+|++|+++++| .|++++.
T Consensus 342 l~~g~~K~~lae~i~~~l~pirer~~~~~~d--~~~~~~~ 379 (393)
T 3hv0_A 342 MLSGEIKSILVQELVKLTKNHQKNREAINDD--VIAKFTN 379 (393)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHTCCHH--HHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHhC
Confidence 8999999999999999999999999988764 3776653
No 24
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=100.00 E-value=2.6e-64 Score=513.93 Aligned_cols=311 Identities=16% Similarity=0.214 Sum_probs=233.6
Q ss_pred ccchhHHHHHhhhhcccchhhhhhhhcc-ccCCCcEEEEeecCCC-ccchhhHHHHHHHHHHHHHc-CCcEEEEeeCcee
Q psy3680 3 RFKAHLLLTHMKKFVNSSGQQIRHYSDH-KISFPQRIFSGIQPTG-TLHLGNYFGAVQTWSALQNK-GEDVIFCIVDLHS 79 (422)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~i~tGi~PTG-~lHLGny~g~i~~~~~lq~~-g~~~~ilIaD~hA 79 (422)
|+||+..+..++|++..+.++++.+++. +++++.++|+|++||| ++|||||+|++ ...+||++ |+.++|+|||+|+
T Consensus 45 ~~~~~~~~~~~~RG~~~~~~d~~~~l~~~~~~~~~~vy~G~~PTg~~lHLGh~v~~~-~~~~lQ~~~~~~v~i~I~D~~~ 123 (395)
T 3i05_A 45 RVLGKKPHHFLRRGIFFSHRDLNLLLDVYESGQPFYLYTGRGPSSESMHMGHLIPFM-FTKWLQDSFRVPLVIQMTDDEK 123 (395)
T ss_dssp HHHTSCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEECCCSSCCBGGGSHHHH-HHHHHHHHHTCCEEEEECHHHH
T ss_pred HhhCcchHHHHhcCCccccccHHHHHHHHhcCCCeEEEEeecCCCccchHHHHHHHH-HHHHHHHhcCCcEEEEEcchHH
Confidence 5678888999999999999888777755 4678999999999999 89999999973 34449997 7899999999976
Q ss_pred ec-cCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCcchhHHHHHHhhccchhhhhcchhHHHHhhhc---CCCCc
Q psy3680 80 IT-IKQKHKDLKENIQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAEL---KQSPT 155 (422)
Q Consensus 80 lt-~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~---~~~~~ 155 (422)
.+ ++.+++++++|+++++++|+|+|+||++++||.||+|++. | ...+++|.|+.+++...+.. +++++
T Consensus 124 ~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~~~----~----~~~v~~l~r~~t~~~~~~~~~~~~~~s~ 195 (395)
T 3i05_A 124 FYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDYMGC----M----YRTVAKIERAFTASQVRGCFGFAMEDNC 195 (395)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHTTTCCTTSEEEEEHHHHTTT----S----HHHHHHHHHHSBHHHHHHHHCCCTTSBH
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCHHHHH----H----HHHHHHHHhhCCHHHHHHhhCCCCCCch
Confidence 65 6799999999999999999999999999999999999861 1 13344566666666554432 57999
Q ss_pred cchhhHHHhhh--------hhhccC----ccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCC
Q psy3680 156 GLFLYPVLQAA--------DILLYK----ATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLK 223 (422)
Q Consensus 156 gl~~YPvLqAa--------Dil~~~----a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~ 223 (422)
|+|+||+|||| ||++++ +|+||||.||++|+++|||+|+|||+ +.|..+ .+++||||+
T Consensus 196 g~f~YPlLQaaD~~~~~~~DIll~~~~~~~~lvp~G~DQ~~~i~l~Rdla~r~~~------~~p~~l----~~~~l~gLd 265 (395)
T 3i05_A 196 GRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRDIAPRLGY------LKPAVI----HSKFFPGLS 265 (395)
T ss_dssp HHHHHHHHHHGGGSGGGCTTTSCGGGCCCEEEEEEEGGGHHHHHHHHHTHHHHTC------CCCEEE----EECCCCCC-
T ss_pred HHHHHHHHHHHhhhcccchhhhcccccCCceEEEeccchHHHHHHHHHHHHHcCC------CCceee----ccccccCCC
Confidence 99999999999 677788 99999999999999999999999995 345443 489999998
Q ss_pred CCCcccccCCCCCCCcEeccCCHHHHHHHhhh-hccCCCCccc--cCCCCCcchhhHHHHHHhcC--CCCHHHHHHHHh-
Q psy3680 224 DPSKKMSKSDLDSNSKIEITDPPEVIVRKCKK-ALTDCTSAVT--YDPENRPAVSNLITLHALCT--NQLPQDICTQVK- 297 (422)
Q Consensus 224 ~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~-A~tD~~~~~~--~~p~~~p~~~~l~~~~~~~t--~~~~eei~~~~~- 297 (422)
|+++|||||.+ |+|||+|+|++|++||++ |+||+....+ .+++++|+++++++||++|+ +.++++++++|.
T Consensus 266 G~~~KMSKS~~---~~I~L~D~p~~i~kKI~k~A~td~~~~~e~~~~~~g~p~v~~~~~~~~~~~~~~~~~eei~~~y~~ 342 (395)
T 3i05_A 266 GPKGKMSSSSG---TAVLLTDTEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYML 342 (395)
T ss_dssp ---------------CCBTTCCHHHHHHHHC----------------------CCHHHHHHHHHCCCSHHHHHHCC----
T ss_pred CCcccCCCCCC---CcccCCCCHHHHHHHHHhhccCCCccchhhcccCCCCcchhHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 76579999944 699999999999999999 9999865433 25567899999999999995 457888888897
Q ss_pred -CCChhHHHHHHHHHHHhhcCcHHHHHHHHhcCHHHHHHHH
Q psy3680 298 -HLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVL 337 (422)
Q Consensus 298 -~~~~~dlK~~Lae~i~~~l~pir~~~~~l~~~~~~l~~iL 337 (422)
+++|+++|+.|++.|+++|+|+|++|+++++| .|++.+
T Consensus 343 G~l~~g~lK~~lae~i~~~l~pirer~~~~~~d--~~~~~~ 381 (395)
T 3i05_A 343 GRIMTGEVKKLLINTITAITKTHQEKRKLVTDE--DVQLFT 381 (395)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHTTCCHH--HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHh
Confidence 48999999999999999999999999988753 455554
No 25
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=100.00 E-value=4.3e-64 Score=517.52 Aligned_cols=314 Identities=17% Similarity=0.197 Sum_probs=260.8
Q ss_pred ccchhHHHHHhhhhcccchhhhhhhhcc-ccCCCcEEEEeecCC-CccchhhHHHHHHHHHHHHH-cCCcEEEEeeCcee
Q psy3680 3 RFKAHLLLTHMKKFVNSSGQQIRHYSDH-KISFPQRIFSGIQPT-GTLHLGNYFGAVQTWSALQN-KGEDVIFCIVDLHS 79 (422)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~i~tGi~PT-G~lHLGny~g~i~~~~~lq~-~g~~~~ilIaD~hA 79 (422)
|+||+..+..++|++..+.++++.+++. +++++.+||+||+|| |+||||||+|++. ..+||+ .||+++++|||+||
T Consensus 75 ~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~~~~~~vy~G~dPTag~LHLGh~v~~~~-~~~lQ~~~G~~~iilIgD~ta 153 (437)
T 1r6u_A 75 RATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIF-TKWLQDVFNVPLVIQMTDDEK 153 (437)
T ss_dssp HHHTSCCCHHHHHTSEEEEESHHHHHHHHTTTCCEEEEEEECCCSSCCBHHHHHHHHH-HHHHHHHHTCCEEEEECHHHH
T ss_pred HHhCCCcHHHHhCCCccCCCCHHHHHHHHhcCCCcEEEEcccCCCCCccHHHHHHHHH-HHHHHHHhCCcEEEEEeccee
Confidence 4566667788888888888777655544 467899999999999 7999999999763 445998 89999999999999
Q ss_pred ec-cCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCcc----hhHHHHHHhhccchhhhhcchhHHHHhhhcCCCC
Q psy3680 80 IT-IKQKHKDLKENIQLMAASLLACGIDPQKSILFQQSQVPE----HTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSP 154 (422)
Q Consensus 80 lt-~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~e----~~el~w~l~~~~~~~~l~r~~~~K~k~~~~~~~~ 154 (422)
++ +..+++++++|+.+++++|+|+|+||++++||+||+|++ +.++.| ++++|.+..+++.+....++++
T Consensus 154 ~igd~lt~e~i~~n~~~~~~~~lA~GlDp~kt~i~~nSd~~~~l~~~~~l~~------~v~rm~~~~~~k~r~~~~~~~s 227 (437)
T 1r6u_A 154 YLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVV------KIQKHVTFNQVKGIFGFTDSDC 227 (437)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHGGGCTTHHHHHH------HHHHTCBHHHHHHHHCCCTTSB
T ss_pred eecCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEechhhhhhHHHHHHHHH------HHHhhccHHHHHHHhCCCCCCc
Confidence 99 558999999999999999999999999999999999985 444444 5666666666666654446799
Q ss_pred ccchhhHHHhhhhhhc-----------cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCC
Q psy3680 155 TGLFLYPVLQAADILL-----------YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLK 223 (422)
Q Consensus 155 ~gl~~YPvLqAaDil~-----------~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~ 223 (422)
+|+|+||+||||||++ +++++||||.||++|++++||+|+||| ++.|..+. +++||||+
T Consensus 228 ~gef~YPlLQAaDil~l~~d~~~g~~~~~~~lVpvG~DQ~~~i~l~Rdla~r~~------~~~P~~l~----~pll~gLd 297 (437)
T 1r6u_A 228 IGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIG------YPKPALLH----STFFPALQ 297 (437)
T ss_dssp HHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHHHHGGGGT------CCCCEEEE----ECCCEETT
T ss_pred hHhHHHHHHHHHHHHHhhcchhcccccCCceEEEeehhhHHHHHHHHHHHHHhC------CCCceEee----cccccCCC
Confidence 9999999999999999 788999999999999999999999999 35777643 89999998
Q ss_pred CCCcccccCCCCCCCcEeccCCHHHHHHHhhh-hccCCCCcccc--CCCCCcchhhHHHHHHhcC--CCCHHHHHHHHh-
Q psy3680 224 DPSKKMSKSDLDSNSKIEITDPPEVIVRKCKK-ALTDCTSAVTY--DPENRPAVSNLITLHALCT--NQLPQDICTQVK- 297 (422)
Q Consensus 224 ~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~-A~tD~~~~~~~--~p~~~p~~~~l~~~~~~~t--~~~~eei~~~~~- 297 (422)
|+++|||||++| ++|||+|+|++|++||++ |+||+...... .+.++|+++++++|+..|+ ..++++++++|.
T Consensus 298 G~~~KMSKS~~n--saI~L~D~p~~I~kKI~~ya~td~~~~~~~~~~~g~~pd~~~v~~~l~~ft~~~~eieel~~~~~~ 375 (437)
T 1r6u_A 298 GAQTKMSASDPN--SSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTS 375 (437)
T ss_dssp EEEEECCTTSSS--SCCBTTCCHHHHHHHHHHTSCCCBCSSHHHHHHHCBCTTTCHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCccccCCCCCC--CeeeccCCHHHHHHHhhccccCCCccchhhccccCCCccHHHHHHHHHHHcCCHhHHHHHHHHHHc
Confidence 654799999987 799999999999999999 99998432211 1225678889999999886 235667777886
Q ss_pred C-CChhHHHHHHHHHHHhhcCcHHHHHHHHhcCHHHHHHHH
Q psy3680 298 H-LNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVL 337 (422)
Q Consensus 298 ~-~~~~dlK~~Lae~i~~~l~pir~~~~~l~~~~~~l~~iL 337 (422)
+ ++++++|+.||++|+++|+|+|++|++++++ .+++.+
T Consensus 376 G~~~~~~~K~~LAe~i~~~l~~~rer~~~~~~~--~~~~~~ 414 (437)
T 1r6u_A 376 GAMLTGELKKALIEVLQPLIAEHQARRKEVTDE--IVKEFM 414 (437)
T ss_dssp TSSCSTTHHHHHHHHHHHHHHHHHHHHHTCCHH--HHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhc
Confidence 3 8999999999999999999999999988643 344443
No 26
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=100.00 E-value=3e-63 Score=495.22 Aligned_cols=285 Identities=14% Similarity=0.131 Sum_probs=245.8
Q ss_pred HHHHHhhhhcccchh---hhhhhhccccCCCcEEEEeecCCCc-cchhhHHHHHHHHHHHHHcCCcEEEEeeCceeec-c
Q psy3680 8 LLLTHMKKFVNSSGQ---QIRHYSDHKISFPQRIFSGIQPTGT-LHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSIT-I 82 (422)
Q Consensus 8 ~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~i~tGi~PTG~-lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt-~ 82 (422)
++....+|.+.+... .|++.+ ++++.+||+||+|||. +|||||++ +.+|++||++|++++++|||+||+| +
T Consensus 6 ~~~~l~~Rg~~~~~~~~~~l~~~l---~~~~~~vy~G~~PTg~slHlGh~l~-l~~~~~lQ~~g~~~~~~i~D~~a~~~d 81 (322)
T 2yxn_A 6 LIKQLQERGLVAQVTDEEALAERL---AQGPIALVCGFDPTADSLHLGHLVP-LLCLKRFQQAGHKPVALVGGATGLIGD 81 (322)
T ss_dssp HHHHHHHTTCCSEESSHHHHHHHH---HHSCCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCC
T ss_pred HHHHHHHCCceeeeCCHHHHHHHH---cCCCCEEEEeecCCCCcccHHHHHH-HHHHHHHHHcCCcEEEEEccceeeecC
Confidence 455566777777554 565666 3678999999999996 99999996 7899999999999999999999999 5
Q ss_pred CC---------CHHHHHHHH---HHHHHHHHHcCCCCCceEEEEcCCCcc-hhHHHHH--HhhccchhhhhcchhHHHHh
Q psy3680 83 KQ---------KHKDLKENI---QLMAASLLACGIDPQKSILFQQSQVPE-HTQLAWV--LTCLCTVNRLNHMPTYVEKC 147 (422)
Q Consensus 83 ~~---------~~~~i~~~~---~~i~a~~lA~Gldp~k~~i~~qSdi~e-~~el~w~--l~~~~~~~~l~r~~~~K~k~ 147 (422)
+. +++++++|+ +++++.|+|+|+||++++||+||+|+. +.++.|+ ++|++++++|.|++++|+|.
T Consensus 82 p~g~~~~R~~l~~e~i~~n~~~~~~~~~~~la~g~dp~k~~i~~qs~w~~~~~~l~~l~~~~~~~~v~~m~~~~~~k~r~ 161 (322)
T 2yxn_A 82 PSFKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRL 161 (322)
T ss_dssp CTTCSSCCCCCCHHHHHHHHHHHHHHHGGGSCSSSGGGCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHTTCHHHHHHH
T ss_pred CCCcccccccCCHHHHHHHHHHHHHHHHHHHHcCCCccceEEEecchhhccCcHHHHHHHHhccccHHHHhhhHHHHHHh
Confidence 64 899999999 888888999999999999999999976 4888888 89999999999999999988
Q ss_pred h-hcCCCCccchhhHHHhhhhhhcc----CccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccC
Q psy3680 148 A-ELKQSPTGLFLYPVLQAADILLY----KATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSL 222 (422)
Q Consensus 148 ~-~~~~~~~gl~~YPvLqAaDil~~----~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L 222 (422)
. ..+++++|+|+||+||||||+++ +|++++||.||+||+++|||+|+|||+ + .|..+ .+++|||+
T Consensus 162 ~~~~~~is~g~f~YP~LQaaDil~l~~~~~~~v~~gG~DQ~~~i~l~rdla~r~n~--~----~~~~l----~~pll~gl 231 (322)
T 2yxn_A 162 NREDQGISFTEFSYNLLQGYDFACLNKQYGVVLCIGGSDQWGNITSGIDLTRRLHQ--N----QVFGL----TVPLITKA 231 (322)
T ss_dssp HCTTCCCCHHHHTHHHHHHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHC--C----CCEEE----ECCCCBCT
T ss_pred ccCCCCccchhhhHHHHHHHHHHHHhccCCceEEecCchhHHHHHHHHHHHHHhCC--C----Cceee----ccCccCCC
Confidence 6 34678999999999999999999 999999999999999999999999996 2 23222 37888999
Q ss_pred CCCCcccccCCCCCCCcEeccC---CHHHHHHHhhhhccCCCCccccCCCCCcchhhHHHHHHhcCCCCHHHHHHHHh-C
Q psy3680 223 KDPSKKMSKSDLDSNSKIEITD---PPEVIVRKCKKALTDCTSAVTYDPENRPAVSNLITLHALCTNQLPQDICTQVK-H 298 (422)
Q Consensus 223 ~~~~~KMSKS~~n~~s~I~L~D---sp~~I~kKI~~A~tD~~~~~~~~p~~~p~~~~l~~~~~~~t~~~~eei~~~~~-~ 298 (422)
+ | +|||||++| +|||+| +|+++++||+++ +| +++.+++.+|..++..++++++++|. +
T Consensus 232 d-G-~KMSKS~~n---~I~L~d~~tsp~~~~~ki~~~-~d------------~~v~~~l~~~~~~~~~~i~~l~~~~~~g 293 (322)
T 2yxn_A 232 D-G-TKFGKTEGG---AVWLDPKKTSPYKFYQFWINT-AD------------ADVYRFLKFFTFMSIEEINALEEEDKNS 293 (322)
T ss_dssp T-S-CBTTEETTE---ECBSSTTTSCHHHHHHHHHTC-CH------------HHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred C-c-ccccCCCCC---eeeccCCCCCHHHHHHHHhCC-Cc------------ccHHHHHHHHHcCCHHHHHHHHHHHHcC
Confidence 6 3 799999987 999999 999999999996 33 24666666666666677888888887 5
Q ss_pred CChhHHHHHHHHHHHhhcCcHHHHHH
Q psy3680 299 LNTGQYKLLLADVLVEKFKPIRDEIE 324 (422)
Q Consensus 299 ~~~~dlK~~Lae~i~~~l~pir~~~~ 324 (422)
.+++++|+.||++|+++++|.++..+
T Consensus 294 ~~~~~~K~~La~~i~~~l~~~~~~~~ 319 (322)
T 2yxn_A 294 GKAPRAQYVLAEQVTRLVHGEEGLQA 319 (322)
T ss_dssp SSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 69999999999999999999988764
No 27
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=100.00 E-value=2.3e-62 Score=487.49 Aligned_cols=269 Identities=20% Similarity=0.248 Sum_probs=234.6
Q ss_pred hhhhhhhhccccCCCcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeec-cCCCHHHHHHHHHHHHHH
Q psy3680 21 GQQIRHYSDHKISFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSIT-IKQKHKDLKENIQLMAAS 99 (422)
Q Consensus 21 ~~~i~~~~~~~~~~~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt-~~~~~~~i~~~~~~i~a~ 99 (422)
.+.++.+++ +++++||+||+|||++|||| ++++.+|++||++|++++++|||+||++ +..+++++++|+.+++++
T Consensus 17 ~~~l~~~L~---~~~~~vy~G~~PTg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~ 92 (314)
T 2zp1_A 17 EEELREVLK---KDEKSAYIGFEPSGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKV 92 (314)
T ss_dssp HHHHHHHHT---SSSEEEEEEECCCSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc---CCCCEEEEccCCCCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHH
Confidence 357888883 78899999999999999999 7779999999999999999999999999 545999999999999999
Q ss_pred HHHcCCCCCceEEEEcCCCcch---hHHHHHHhhccchhhhhcchhHHHHhhhcCCCCccchhhHHHhhhhhhccCccEE
Q psy3680 100 LLACGIDPQKSILFQQSQVPEH---TQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGLFLYPVLQAADILLYKATHI 176 (422)
Q Consensus 100 ~lA~Gldp~k~~i~~qSdi~e~---~el~w~l~~~~~~~~l~r~~~~K~k~~~~~~~~~gl~~YPvLqAaDil~~~a~~v 176 (422)
|+|+|+| ++|++||+|+++ +++.|.++|++++++|+|++++|+|.. +..++|+|+||+||||||+++++++|
T Consensus 93 ~~a~G~d---~~~~~qs~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~~~--~~~~~g~~~YP~LQaaDil~~~~~~v 167 (314)
T 2zp1_A 93 FEAMGLK---AKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARED--ENPKVAEVIYPIMQVNTSHYLGVDVA 167 (314)
T ss_dssp HHHTTCC---CEEEEGGGTTTSHHHHHHHHHHHHHSCHHHHHHHTTTTSCCC--SSCCTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHhcCCC---eEEEECChhhcchHHHHHHHHHHCcCcHHHHhccchhhhhcc--CCCCchhhhhHHHHHHhHHhhCCCEE
Confidence 9999998 789999999876 333444999999999999999987753 22499999999999999999999999
Q ss_pred eecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHHHHhhhh
Q psy3680 177 PAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKA 256 (422)
Q Consensus 177 pvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~A 256 (422)
|||+||++|++++|++++ +.|..+ .+++||||+ |.+|||||.+ |+|||+|+|++|++||++|
T Consensus 168 ~~G~DQ~~~~~l~R~i~~----------~~~~~~----~~~~l~~l~-G~~KMSKS~~---~~I~L~d~~~~i~~KI~~a 229 (314)
T 2zp1_A 168 VGGMEQRKIHMLARELLP----------KKVVCI----HNPVLTGLD-GEGKMSSSKG---NFIAVDDSPEEIRAKIKKA 229 (314)
T ss_dssp EEEGGGHHHHHHHHHHSS----------SCCEEE----EECCCBCTT-SSSBCCTTTT---CSCBTTCCHHHHHHHHHHS
T ss_pred EcChhHHHHHHHHHHhcC----------CCcEEe----eccccccCC-cccccCCCCc---ceecCCCCHHHHHHHHHhC
Confidence 999999999999999865 234333 489999997 4589999954 5999999999999999999
Q ss_pred ccCCCCccccCCCCCcchhhHHHHHHhcC-----------------CCCHHHHHHHHh--CCChhHHHHHHHHHHHhhcC
Q psy3680 257 LTDCTSAVTYDPENRPAVSNLITLHALCT-----------------NQLPQDICTQVK--HLNTGQYKLLLADVLVEKFK 317 (422)
Q Consensus 257 ~tD~~~~~~~~p~~~p~~~~l~~~~~~~t-----------------~~~~eei~~~~~--~~~~~dlK~~Lae~i~~~l~ 317 (422)
+||+.. ++.++++.|++.|. +.+++|++++|. +++|+++|++||++|+++|+
T Consensus 230 ~td~~~---------~~~~~~~~~~~~~~~~~~~i~r~~k~g~~~~~~~~eei~~~~~~g~~~~~~~K~~la~~i~~~l~ 300 (314)
T 2zp1_A 230 YCPAGV---------VEGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMYLKNAVAEELIKILE 300 (314)
T ss_dssp CCCTTC---------CTTCHHHHHHHHHCCSSEEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCC---------CCCCcHHHHHHHHhcCCcceeehhhccCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 999842 23567888888763 458999999997 37999999999999999999
Q ss_pred cHHHHHHH
Q psy3680 318 PIRDEIEY 325 (422)
Q Consensus 318 pir~~~~~ 325 (422)
|+|++|+.
T Consensus 301 p~r~~~~~ 308 (314)
T 2zp1_A 301 PIRKRLLE 308 (314)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHc
Confidence 99999973
No 28
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-62 Score=500.42 Aligned_cols=301 Identities=21% Similarity=0.248 Sum_probs=236.5
Q ss_pred HHHhhhhccc--chhhhhhhhccccCCCcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeec-cCC-C
Q psy3680 10 LTHMKKFVNS--SGQQIRHYSDHKISFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSIT-IKQ-K 85 (422)
Q Consensus 10 ~~~~~~~~~~--~~~~i~~~~~~~~~~~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt-~~~-~ 85 (422)
+.-..|++.+ +.+.|+.+++ +.+++.+||+||+|||+||||||+|+++.|..+| +|++++++|||+||+| ++. +
T Consensus 13 ~~l~~rg~~e~~~~e~L~~~L~-~~~~p~~vy~G~~PTG~LHlG~~~~al~~~~~~q-~g~~~ii~I~D~ha~t~~~~~~ 90 (394)
T 2dlc_X 13 FGLITKNLQEVLNPQIIKDVLE-VQKRHLKLYWGTAPTGRPHCGYFVPMTKLADFLK-AGCEVTVLLADLHAFLDNMKAP 90 (394)
T ss_dssp HHHHHTTCSEEECHHHHHHHHH-TSCSCCEEEEEECCCSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTSSC
T ss_pred HHHHHcCcceecCHHHHHHHHH-ccCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHH-cCCcEEEEEcCCccccCCCCCc
Confidence 3444455322 2357888883 2467789999999999999999999998887555 8999999999999999 454 4
Q ss_pred HHHHHHHH----HHHHHHHHHcCCCCCceEEEEcCCC---cchhHHHHHHhhccchhhhhcchhHHHHhhhcCCCCccch
Q psy3680 86 HKDLKENI----QLMAASLLACGIDPQKSILFQQSQV---PEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGLF 158 (422)
Q Consensus 86 ~~~i~~~~----~~i~a~~lA~Gldp~k~~i~~qSdi---~e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~~~~~~gl~ 158 (422)
.+.++.+. ..+.+.|+|+|+||+++.||+||+| +++.++.|.++|++|+++|+|+++.+.|. .+++++|+|
T Consensus 91 ~e~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~~~r~--~~~~~~g~~ 168 (394)
T 2dlc_X 91 LEVVNYRAKYYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADVVKQ--VANPLLSGL 168 (394)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTCCCTTCEEEETHHHHTSHHHHHHHHHHHTTSCHHHHHHHTTTTSCC--CSSCCTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhHcEEEeCchhcchHHHHHHHHHHhCcCcHHHHhcccHhhhcc--cCCccceee
Confidence 44445443 5667789999999999999999999 56778899999999999999887654332 257899999
Q ss_pred hhHHHhhhhhhccCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCC
Q psy3680 159 LYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNS 238 (422)
Q Consensus 159 ~YPvLqAaDil~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s 238 (422)
+||+||||||++|++++||||.||++|++++||++++||. +.|..++ +++||+|+ |++|||||++| +
T Consensus 169 ~YP~lQaaD~l~~~~~~v~~G~DQ~~~~~l~rdl~~r~~~------~~p~~l~----~pll~gl~-~G~KMSKS~~n--s 235 (394)
T 2dlc_X 169 IYPLMQALDEQFLDVDCQFGGVDQRKIFVLAEENLPSLGY------KKRAHLM----NPMVPGLA-QGGKMSASDPN--S 235 (394)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTC------CCCEEEE----ECCCCCCC-----------C--C
T ss_pred echhHhhccHhhhCCCEEecCccHHHHHHHHHHHHHHcCC------CCCEEEe----cccccCCC-CCCcCCCCCCC--C
Confidence 9999999999999999999999999999999999999983 4677766 78999997 45899999997 6
Q ss_pred cEeccCCHHHHHHHhhhhccCCCCccccCCCCCcchhhHHHH----------------------------HHhcCCCCHH
Q psy3680 239 KIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSNLITL----------------------------HALCTNQLPQ 290 (422)
Q Consensus 239 ~I~L~Dsp~~I~kKI~~A~tD~~~~~~~~p~~~p~~~~l~~~----------------------------~~~~t~~~~e 290 (422)
+|||+|+|++|++||++|+||+.+. +.+.++.| ++.++..+++
T Consensus 236 ~I~L~D~p~~i~kKI~ka~Td~~~~---------~d~~v~~y~k~~~~p~~~~~~~~g~~~~~i~~~~~~~~~~~~~~i~ 306 (394)
T 2dlc_X 236 KIDLLEEPKQVKKKINSAFCSPGNV---------EENGLLSFVQYVIAPIQELKFGTNHFEFFIDRPEKFGGPITYKSFE 306 (394)
T ss_dssp SCBTTCCHHHHHHHHHHSCCCTTCC---------SSCHHHHHHHHTHHHHHHTSSSTTCCCEEECCCGGGSCCEEESSHH
T ss_pred EEeccCCHHHHHHHHHHhcCCCCCC---------CcchHHHHHHhhhcchhhhcccCCCceEEEeccccccCcCCHHHHH
Confidence 7999999999999999999998431 11123333 3445567999
Q ss_pred HHHHHHhC--CChhHHHHHHHHHHHhhcCcHHHHHHHHhcCHHHHHHHHHhh
Q psy3680 291 DICTQVKH--LNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVLLDG 340 (422)
Q Consensus 291 ei~~~~~~--~~~~dlK~~Lae~i~~~l~pir~~~~~l~~~~~~l~~iL~~G 340 (422)
+++++|.+ ++++++|++||++|+++|+|+|++|+ ++++ .+++++.|
T Consensus 307 el~~~~~~g~~~~~~~K~~La~~i~~~l~p~r~~~~---~~~~-~~~~~~~~ 354 (394)
T 2dlc_X 307 EMKLAFKEEKLSPPDLKIGVADAINELLEPIRQEFA---NNKE-FQEASEKG 354 (394)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH---HCHH-HHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHH---CCHH-HHHHHhcc
Confidence 99999974 89999999999999999999999987 3554 66666544
No 29
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=100.00 E-value=2.6e-63 Score=517.65 Aligned_cols=314 Identities=18% Similarity=0.202 Sum_probs=258.8
Q ss_pred ccchhHHHHHhhhhcccchhhhhhhhcc-ccCCCcEEEEeecCC-CccchhhHHHHHHHHHHHHH-cCCcEEEEeeCcee
Q psy3680 3 RFKAHLLLTHMKKFVNSSGQQIRHYSDH-KISFPQRIFSGIQPT-GTLHLGNYFGAVQTWSALQN-KGEDVIFCIVDLHS 79 (422)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~i~tGi~PT-G~lHLGny~g~i~~~~~lq~-~g~~~~ilIaD~hA 79 (422)
|+||+..|..++|++..+.++++.+++. +++++.+||+||+|| |+||||||+|++. ..+||+ .||+++|+|||+||
T Consensus 122 ~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~~~~~~vy~G~dPTag~LHLGh~v~~~~-~~~lQ~~~g~~~iilI~D~~a 200 (477)
T 1r6t_A 122 RATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIF-TKWLQDVFNVPLVIQMTDDEK 200 (477)
T ss_dssp HHHCSCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEECCCTTCCBGGGHHHHHH-HHHHHHHHTCCEEEEECHHHH
T ss_pred HHhCcccHHHHhCCCccccCCHHHHHHHHhcCCCcEEEEcccCCCCCccHHHHHHHHH-HHHHHHHhCCcEEEEEeccee
Confidence 4566667888889988888777655544 467899999999999 7999999999763 334998 89999999999999
Q ss_pred ec-cCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCcc----hhHHHHHHhhccchhhhhcchhHHHHhhhcCCCC
Q psy3680 80 IT-IKQKHKDLKENIQLMAASLLACGIDPQKSILFQQSQVPE----HTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSP 154 (422)
Q Consensus 80 lt-~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi~e----~~el~w~l~~~~~~~~l~r~~~~K~k~~~~~~~~ 154 (422)
++ +..+++++++|+.+++++|+|+|+||++++||+||+|++ +.++.|.+++.+++.++ +.+....++++
T Consensus 201 ~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k~~i~~nsd~~~~l~~~~~~~~~l~r~~t~~~~------k~r~~~~~~~s 274 (477)
T 1r6t_A 201 YLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQV------KGIFGFTDSDC 274 (477)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEEHHHHGGGCTTHHHHHHHHHHTCBHHHH------HHHHCCCTTSB
T ss_pred eecCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEechhhhcccHHHHHHHHHHHhhccHHHH------HHHhCCCCCCC
Confidence 99 568999999999999999999999999999999999985 66666655555555444 33332236799
Q ss_pred ccchhhHHHhhhhhhc-----------cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCC
Q psy3680 155 TGLFLYPVLQAADILL-----------YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLK 223 (422)
Q Consensus 155 ~gl~~YPvLqAaDil~-----------~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~ 223 (422)
+|+|+||+||||||++ +++++||||.|||+|++++||+|+||| ++.|..+. +++||||+
T Consensus 275 ~gef~YPlLQAaDil~l~~d~~~g~~~~~~~~VpvG~DQ~~~i~l~Rdla~r~~------~~~p~~l~----~pll~gLd 344 (477)
T 1r6t_A 275 IGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIG------YPKPALLH----STFFPALQ 344 (477)
T ss_dssp HHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHHHHGGGGT------CCCCEEEE----ECCCEETT
T ss_pred hhhhhhHHHHHHHHHHhccchhhccccCCceeEeccccHHHHHHHHHHHHHHhC------CCCceeee----cccccCCC
Confidence 9999999999999999 688999999999999999999999999 35677643 89999998
Q ss_pred CCCcccccCCCCCCCcEeccCCHHHHHHHhhh-hccCCCCcccc--CCCCCcchhhHHHHHHhcC--CCCHHHHHHHHh-
Q psy3680 224 DPSKKMSKSDLDSNSKIEITDPPEVIVRKCKK-ALTDCTSAVTY--DPENRPAVSNLITLHALCT--NQLPQDICTQVK- 297 (422)
Q Consensus 224 ~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~-A~tD~~~~~~~--~p~~~p~~~~l~~~~~~~t--~~~~eei~~~~~- 297 (422)
|+++|||||++| ++|||+|+|++|++||++ |+||+...... .++++|+++++++|+..|+ ..++++++++|.
T Consensus 345 G~~~KMSKS~~n--saI~L~d~p~~i~kKi~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~ft~~~~eieel~~~~~~ 422 (477)
T 1r6t_A 345 GAQTKMSASDPN--SSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTS 422 (477)
T ss_dssp EEEEECCTTSTT--CCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCccccCCCCCC--CceeecCCHHHHHHHhccccccCCccchhhccccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 654799999987 799999999999999999 99998432111 1236678889999999886 235667777886
Q ss_pred C-CChhHHHHHHHHHHHhhcCcHHHHHHHHhcCHHHHHHHH
Q psy3680 298 H-LNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVL 337 (422)
Q Consensus 298 ~-~~~~dlK~~Lae~i~~~l~pir~~~~~l~~~~~~l~~iL 337 (422)
+ ++++++|+.||++|+++|+|+|++|++++++ .|++.+
T Consensus 423 G~~~~~~~K~~Lae~i~~~l~pirer~~~~~~~--~v~~~~ 461 (477)
T 1r6t_A 423 GAMLTGELKKALIEVLQPLIAEHQARRKEVTDE--IVKEFM 461 (477)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHH--HHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHh
Confidence 3 8999999999999999999999999987642 344443
No 30
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=100.00 E-value=8.1e-61 Score=486.28 Aligned_cols=289 Identities=20% Similarity=0.228 Sum_probs=232.0
Q ss_pred hHHHHHhhhhc--ccchhhhhhhhccccCCCcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeec-cC
Q psy3680 7 HLLLTHMKKFV--NSSGQQIRHYSDHKISFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSIT-IK 83 (422)
Q Consensus 7 ~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt-~~ 83 (422)
+-.+.-++|++ -.+.+.|+.+++ .++++||+||+|||++|||||+|+++.|. +|+.|++++++|||+||+| ++
T Consensus 8 ~~~~~l~~Rg~~e~~~~~~L~~~L~---~~~~~vy~G~~PTG~lHlG~~~~~l~~~~-~~q~g~~~i~~I~D~ha~t~~~ 83 (372)
T 1n3l_A 8 EEKLHLITRNLQEVLGEEKLKEILK---ERELKIYWGTATTGKPHVAYFVPMSKIAD-FLKAGCEVTILFADLHAYLDNM 83 (372)
T ss_dssp HHHHHHHHTTCSEEECHHHHHHHHT---TSCCEEEEEECCSSCCBGGGHHHHHHHHH-HHHTTCEEEEEECHHHHHHTTT
T ss_pred HHHHHHHHcCCeeecCHHHHHHHHh---cCCCEEEeCcCCCCcccHHHHHHHHHHHH-HHHCCCCEEEEEcCCceeeCCC
Confidence 33455666665 345568888884 37789999999999999999999887664 5668999999999999999 57
Q ss_pred CCHHHHHHHHH---H--HHHHHHHcCCCCCceEEEEcCCCc---chhHHHHHHhhccchhhhhcchhHHHHhhhcCCCCc
Q psy3680 84 QKHKDLKENIQ---L--MAASLLACGIDPQKSILFQQSQVP---EHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPT 155 (422)
Q Consensus 84 ~~~~~i~~~~~---~--i~a~~lA~Gldp~k~~i~~qSdi~---e~~el~w~l~~~~~~~~l~r~~~~K~k~~~~~~~~~ 155 (422)
.++.++.+++. + +.+.|+|+|+||++++||+||+|+ ++.++.|.++|++|+++++|+.+.. ....+++++
T Consensus 84 ~~~~~l~~~~~~~~~~~i~~~lla~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~~~~~~~v--~~~~~~~~~ 161 (372)
T 1n3l_A 84 KAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEV--VKQVEHPLL 161 (372)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHTCCCTTEEEEEGGGTTTSHHHHHHHHHHHTTSCHHHHHHHTTTT--SCCCSSCCH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHcCCChhhcEEEECCeecccHHHHHHHHHHHhhCcHHHHHhchhhh--hcccCCCcc
Confidence 88888765553 2 445679999999999999999996 6778889999999999999864310 111257899
Q ss_pred cchhhHHHhhhhhhccCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCC
Q psy3680 156 GLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLD 235 (422)
Q Consensus 156 gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n 235 (422)
|+|+||+||||||++|+|++||||.||++|++++||++++|+ +..|..+. +++||+|+ |+|||||++|
T Consensus 162 g~~~YP~lQaaDil~~~a~~v~~G~DQ~~~~~l~rdl~~r~~------~~~p~~l~----~pll~gld--G~KMSKS~~n 229 (372)
T 1n3l_A 162 SGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALG------YSKRVHLM----NPMVPGLT--GSKMSSSEEE 229 (372)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGT------CCCCEEEE----ECCCCCSS--CC-------C
T ss_pred eeeecchHhhccHHHhcCCEEEcChhHHHHHHHHHHHHHHcC------CCCCEEEe----cCccCCCC--cccccCCCCC
Confidence 999999999999999999999999999999999999999997 34677765 78999996 3799999997
Q ss_pred CCCcEeccCCHHHHHHHhhhhccCCCCccccCCCCCcchhhHHHHHH--------hcC------------CCCHHHHHHH
Q psy3680 236 SNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVSNLITLHA--------LCT------------NQLPQDICTQ 295 (422)
Q Consensus 236 ~~s~I~L~Dsp~~I~kKI~~A~tD~~~~~~~~p~~~p~~~~l~~~~~--------~~t------------~~~~eei~~~ 295 (422)
++|||+|+|++|++||++|+||+.+ ++ + +.++.|++ .|+ ..++++++++
T Consensus 230 --s~I~L~d~p~~i~kKi~~A~td~~~-~~-----d---~~v~~~lk~~l~~~~~~f~~er~~~~g~~~~~~~i~el~~~ 298 (372)
T 1n3l_A 230 --SKIDLLDRKEDVKKKLKKAFCEPGN-VE-----N---NGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKD 298 (372)
T ss_dssp --CSCBTTCCHHHHHHHHHTCCCCTTC-CS-----S---CHHHHHHHHTTGGGTTCEEECCCGGGTCCEEESSHHHHHHH
T ss_pred --CeEeccCCHHHHHHHHHHccCCCCC-CC-----c---ccHHHHHHHhhhhhhcceeecccccccCCCCHHHHHHHHHH
Confidence 7899999999999999999999853 11 1 23444433 343 4689999999
Q ss_pred HhC--CChhHHHHHHHHHHHhhcCcHHHHHH
Q psy3680 296 VKH--LNTGQYKLLLADVLVEKFKPIRDEIE 324 (422)
Q Consensus 296 ~~~--~~~~dlK~~Lae~i~~~l~pir~~~~ 324 (422)
|.+ ++++++|++||++|+++|+|+|++|+
T Consensus 299 ~~~g~~~~~~~K~~La~~i~~~l~p~r~~~~ 329 (372)
T 1n3l_A 299 FAAEVVHPGDLKNSVEVALNKLLDPIREKFN 329 (372)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHhHHHHHhc
Confidence 974 89999999999999999999999985
No 31
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=4.6e-61 Score=494.34 Aligned_cols=283 Identities=14% Similarity=0.098 Sum_probs=242.3
Q ss_pred HHhhhhcccch---hhhhhhhccccCCCcEEEEeecCCC-ccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeec-cC--
Q psy3680 11 THMKKFVNSSG---QQIRHYSDHKISFPQRIFSGIQPTG-TLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSIT-IK-- 83 (422)
Q Consensus 11 ~~~~~~~~~~~---~~i~~~~~~~~~~~~~i~tGi~PTG-~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt-~~-- 83 (422)
.-.+|.+.++. +.+++.+ .+++.++|+||+||| ++||||+++ +.+|++||++||+++++|||+||+| +|
T Consensus 8 ~L~~RG~~~~~~~~e~L~~~L---~~~~~~iy~G~dPTg~sLHLGhlv~-l~~l~~lQ~~G~~~i~lIgD~ta~igdpsk 83 (432)
T 2jan_A 8 ELSWRGLIAQSTDLDTLAAEA---QRGPMTVYAGFDPTAPSLHAGHLVP-LLTLRRFQRAGHRPIVLAGGATGMIGDPRD 83 (432)
T ss_dssp HHHHHTCCSEESCHHHHHHHH---HHSCCEEEEEECCSSSSCBGGGHHH-HHHHHHHHHTTCEEEEEECHHHHHHHCCCC
T ss_pred HHHHcCchhhcCCHHHHHHHH---cCCCCEEEEeeCCCCCCcCHHHHHH-HHHHHHHHHCCCcEEEEEcCcEEEccCCcc
Confidence 34456666533 3576777 467899999999999 699999775 7899999999999999999999999 67
Q ss_pred ------CCHHHHHHHHHHH---HHHHHHcCCCCCceEEEEcCCCcch-hHHHHH--HhhccchhhhhcchhHHHHhhhcC
Q psy3680 84 ------QKHKDLKENIQLM---AASLLACGIDPQKSILFQQSQVPEH-TQLAWV--LTCLCTVNRLNHMPTYVEKCAELK 151 (422)
Q Consensus 84 ------~~~~~i~~~~~~i---~a~~lA~Gldp~k~~i~~qSdi~e~-~el~w~--l~~~~~~~~l~r~~~~K~k~~~~~ 151 (422)
.++++|++|+.++ ++.|+|+|+||++++||+||+|+++ .++.|+ ++|++++++|+|+++||+|. ..+
T Consensus 84 ~~~R~~~~~e~i~~n~~~~~~~~~~~La~G~dp~k~~i~~nsdw~~~~~~l~~lr~l~~~~tv~~m~~~~~~k~r~-~~~ 162 (432)
T 2jan_A 84 VGERSLNEADTVAEWTERIRGQLERFVDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRL-AGE 162 (432)
T ss_dssp TTTSGGGHHHHHHHHHHHHHHHHHHHSCCSSSTTCCEEEETHHHHSSCBHHHHHHHTGGGCBHHHHHHSHHHHHHT-STT
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECchhcccCcHHHHHHHHhccCcHHHHhcchHHhhhh-cCC
Confidence 7899999999766 6778999999999999999999774 688898 89999999999999999998 346
Q ss_pred CCCccchhhHHHhhhhhhcc----CccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCc
Q psy3680 152 QSPTGLFLYPVLQAADILLY----KATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSK 227 (422)
Q Consensus 152 ~~~~gl~~YPvLqAaDil~~----~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~ 227 (422)
++++|+|+||+||||||++| +|++||||.|||||+++|||+|+|||+. |...+ ..|+||+++ | +
T Consensus 163 ~is~~ef~YPlLQaaDil~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~-------~~~~l---~~plL~~ld-G-~ 230 (432)
T 2jan_A 163 GISYTEFSYLLLQANDYVELHRRHGCTLQIGGADQWGNIIAGVRLVRQKLGA-------TVHAL---TVPLVTAAD-G-T 230 (432)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHCCCEEEECSTTHHHHHHHHHHHHHHHCC-------CCEEE---ECCCCBCTT-S-C
T ss_pred CcchHHHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCCC-------Ccccc---ccccccCCC-c-C
Confidence 79999999999999999999 9999999999999999999999999962 33333 378889996 3 7
Q ss_pred ccccCCCCCCCcEeccC---CHHHHHHHhhhhccCCCCccccCCCCCcchhhHHHHHHhcCCCCHHHHHHHHh-CCChhH
Q psy3680 228 KMSKSDLDSNSKIEITD---PPEVIVRKCKKALTDCTSAVTYDPENRPAVSNLITLHALCTNQLPQDICTQVK-HLNTGQ 303 (422)
Q Consensus 228 KMSKS~~n~~s~I~L~D---sp~~I~kKI~~A~tD~~~~~~~~p~~~p~~~~l~~~~~~~t~~~~eei~~~~~-~~~~~d 303 (422)
|||||++| ++|||+| +|+++++||+++ +| +++.+++.+|..++.+++++++++|. +.++++
T Consensus 231 KMSKS~~n--saI~L~d~~tsp~~i~qki~~~-~D------------~~v~~~l~l~t~~~~~ei~~l~~~~~~g~~~~~ 295 (432)
T 2jan_A 231 KFGKSTGG--GSLWLDPQMTSPYAWYQYFVNT-AD------------ADVIRYLRWFTFLSADELAELEQATAQRPQQRA 295 (432)
T ss_dssp BTTBCSSS--CBCBSSTTTSCHHHHHHHHHTC-CH------------HHHHHHHHHHSCCCHHHHHHHHHHHHHCGGGCH
T ss_pred cCCCCCCC--CeEEccCCCCCHHHHHHHHhcC-Cc------------hhHHHHHHHHHcCChHHHHHHHHHHhhccCHHH
Confidence 99999987 7999999 999999999995 44 24666666666666667778888886 679999
Q ss_pred HHHHHHHHHHhhcCcHHHHHHH
Q psy3680 304 YKLLLADVLVEKFKPIRDEIEY 325 (422)
Q Consensus 304 lK~~Lae~i~~~l~pir~~~~~ 325 (422)
+|+.||++|++++++..+..+.
T Consensus 296 ~K~~LA~~v~~~~hg~~~~~~a 317 (432)
T 2jan_A 296 AQRRLASELTVLVHGEAATAAV 317 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHH
Confidence 9999999999999998876554
No 32
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=100.00 E-value=9.4e-61 Score=482.77 Aligned_cols=291 Identities=17% Similarity=0.147 Sum_probs=230.6
Q ss_pred cchhHHHHHhhhhcc--cchh-----hhhhhhccc-cCCCcEEEEeecCCC-ccchhhHHHHHHHHHHHHHcCCcEEEEe
Q psy3680 4 FKAHLLLTHMKKFVN--SSGQ-----QIRHYSDHK-ISFPQRIFSGIQPTG-TLHLGNYFGAVQTWSALQNKGEDVIFCI 74 (422)
Q Consensus 4 ~~~~~~~~~~~~~~~--~~~~-----~i~~~~~~~-~~~~~~i~tGi~PTG-~lHLGny~g~i~~~~~lq~~g~~~~ilI 74 (422)
....++....+|.+. .+++ .++.+++.. .++|++||+||+||| ++||||++ ++.+|++||++|++++++|
T Consensus 7 ~~~~~~~~l~~Rg~~~~~~~~~~~~~~L~~~L~~~~~g~~~~vy~G~~PTg~sLHLGhl~-~l~~~~~lQ~~G~~~~~lI 85 (356)
T 2pid_A 7 GAQGLLAAQKARGLFKDFFPETGTKIELPELFDRGTASFPQTIYCGFDPTADSLHVGHLL-ALLGLFHLQRAGHNVIALV 85 (356)
T ss_dssp ---CHHHHHHHHTSCCEEECSSCTTSCGGGGC-------CCEEEEEECCSSSSCBHHHHH-HHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHcCChheeCCccccHHHHHHHHhcCccCCCCEEEEeecCCCCcccHHHHH-HHHHHHHHHHCCCcEEEEE
Confidence 334566667777777 4444 788888542 446789999999999 59999966 5789999999999999999
Q ss_pred eCceeec-cCC---------CHHHHHHHHHHHHHHHHHcCCCCCc-----------eEEEEcCCCcchhHHHHHH---hh
Q psy3680 75 VDLHSIT-IKQ---------KHKDLKENIQLMAASLLACGIDPQK-----------SILFQQSQVPEHTQLAWVL---TC 130 (422)
Q Consensus 75 aD~hAlt-~~~---------~~~~i~~~~~~i~a~~lA~Gldp~k-----------~~i~~qSdi~e~~el~w~l---~~ 130 (422)
||+||+| ++. ++++|++|+++++++|+|+ +||++ ++|++||+|..+..+.|++ ++
T Consensus 86 aD~hal~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~a~-lDp~~~~~qs~~~~~~~~i~~ns~w~~~~~~~~~l~~~~~ 164 (356)
T 2pid_A 86 GGATARLGDPSGRTKEREALETERVRANARALRLGLEAL-AANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGG 164 (356)
T ss_dssp CTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHSCCSSCCCCEEEEETHHHHTTCBHHHHHHHHGG
T ss_pred ccceeeecCCcccccccccCCHHHHHHHHHHHHHHHHHh-cChhhccccccCCCcceEEEechHhhhhccHHHHHHHHhc
Confidence 9999999 553 7999999999999999999 88855 8999999998877777765 45
Q ss_pred ccchhhhhcchhHHHHhhhcCCCCccchhhHHHhhhhhhcc----CccEEeecCchhHHHHHHHHHHHHhccccCccCCC
Q psy3680 131 LCTVNRLNHMPTYVEKCAELKQSPTGLFLYPVLQAADILLY----KATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPI 206 (422)
Q Consensus 131 ~~~~~~l~r~~~~K~k~~~~~~~~~gl~~YPvLqAaDil~~----~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~ 206 (422)
++++++|.+++++|+|.+..+++++|+|+||+||||||++| +|++||||+||+||+|+|||+|+|||+ ++
T Consensus 165 ~~~v~~m~~~~~~k~r~~~~~~is~g~f~YPvLQAaDil~l~~~~~~~i~p~G~DQ~~~i~l~rdla~r~n~--~~---- 238 (356)
T 2pid_A 165 HFRMGTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAYDFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTG--ED---- 238 (356)
T ss_dssp GSBHHHHHHCHHHHHHHTSTTCCBHHHHHHHHHHHHHHHHHHHHHCCCEEEEEGGGHHHHHHHHHHHHHHSS--CC----
T ss_pred ceeHHHHhcchHHHHhhccCCCCchHHHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCC--CC----
Confidence 99999999999999998755689999999999999999999 999999999999999999999999996 22
Q ss_pred CeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC---CHHHHHHHhhhhccCCCCccccCCCCCcchhhHHHHHHh
Q psy3680 207 PQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD---PPEVIVRKCKKALTDCTSAVTYDPENRPAVSNLITLHAL 283 (422)
Q Consensus 207 P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D---sp~~I~kKI~~A~tD~~~~~~~~p~~~p~~~~l~~~~~~ 283 (422)
| ..+ ..++||+++ | +|||||.+| +|||+| +|++|++||+++ +| +++.+++.+|..
T Consensus 239 ~-~~l---~~pll~~ld-G-~KMSKS~~n---aI~L~d~~tsp~~i~~ki~~~-~D------------~~v~~~l~~~t~ 296 (356)
T 2pid_A 239 V-FGI---TVPLITSTT-G-AKLGKSAGN---AVWLNRDKTSPFELYQFFVRQ-PD------------DSVERYLKLFTF 296 (356)
T ss_dssp C-EEE---EECCCC------------------CCBSSTTTSCHHHHHHHHHTC-CH------------HHHHHHHHHHCC
T ss_pred c-ccc---ccccccCCC-c-ccccCCCCC---eeeccCCCCCHHHHHHHHHcC-Cc------------hhHHHHHHHHHc
Confidence 2 223 267889996 3 799999765 999999 999999999995 44 246677777766
Q ss_pred cCCCCHHHHHHHHh-CCChhHHHHHHHHHHHhhcCcHHHHHH
Q psy3680 284 CTNQLPQDICTQVK-HLNTGQYKLLLADVLVEKFKPIRDEIE 324 (422)
Q Consensus 284 ~t~~~~eei~~~~~-~~~~~dlK~~Lae~i~~~l~pir~~~~ 324 (422)
++.+++++++++|. +.+++++|+.||++|++++++..+..+
T Consensus 297 ~~~~~i~~l~~~~~~g~~~~~~K~~La~~v~~~l~g~~~~~~ 338 (356)
T 2pid_A 297 LPLPEIDHIMQLHVKEPERRGPQKRLAAEVTKLVHGREGLDS 338 (356)
T ss_dssp CCHHHHHHHHHHHHHCGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 66677888888887 578999999999999999999877644
No 33
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=100.00 E-value=1.2e-59 Score=479.64 Aligned_cols=290 Identities=14% Similarity=0.060 Sum_probs=241.8
Q ss_pred HHhhhhccc---c-hhhhhhhhccccCCCcEEEEeecCCCc-cchhhHHHHHHHHHHHHHcCCcEEEEeeCceeec-cC-
Q psy3680 11 THMKKFVNS---S-GQQIRHYSDHKISFPQRIFSGIQPTGT-LHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSIT-IK- 83 (422)
Q Consensus 11 ~~~~~~~~~---~-~~~i~~~~~~~~~~~~~i~tGi~PTG~-lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt-~~- 83 (422)
.-.+|.+.+ + .+.++.++ .+++.++|+||+|||. ||||||++ +.+|++||++||+++++|||+||+| ++
T Consensus 39 ~L~~Rg~~~~~~~~~e~l~~ll---~~~~~~vy~G~dPTg~sLHlGhlv~-l~~l~~lQ~~G~~~~~lIgD~haligdps 114 (392)
T 1y42_X 39 LFEERGYVKDTAGTKEHIAELM---RTRRIGAYVGIDPTAPSLHVGHLLP-LMPLFWMYLEGYKAFTLIGGSTAKIGDPT 114 (392)
T ss_dssp HHHHHTCCSCEESCHHHHHHHH---HHCCCEEEEEECCCSSSCBGGGHHH-HHHHHHHHHHTCEEEEEECTTTTTTCCCC
T ss_pred HHHHCCcHHhhcCCHHHHHHHH---cCCCCEEEEeecCCCCCccHHHHHH-HHHHHHHHHcCCcEEEEEcCceeEeCCCC
Confidence 344566665 2 34577777 5678899999999995 99999996 7899999999999999999999999 55
Q ss_pred --------CCHHHHHHHHHHHHHHHHHcC-----------CC---CCceEEEEcCCC-cchhHHHHH--Hhhccchhhhh
Q psy3680 84 --------QKHKDLKENIQLMAASLLACG-----------ID---PQKSILFQQSQV-PEHTQLAWV--LTCLCTVNRLN 138 (422)
Q Consensus 84 --------~~~~~i~~~~~~i~a~~lA~G-----------ld---p~k~~i~~qSdi-~e~~el~w~--l~~~~~~~~l~ 138 (422)
.++++|++|+..++++++|+| +| |++++||+||+| +++.++.|+ +++++++++|.
T Consensus 115 gk~~~R~~~~~e~i~~n~~~i~~~~~a~~~~~~~~~~~~g~d~~~p~ks~i~~ns~~~~~~~~l~~l~~ig~~~~v~rml 194 (392)
T 1y42_X 115 GRLKSRDHLSSSDATMNMTKIHYQLKKLWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRIGPML 194 (392)
T ss_dssp C-----------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCEEEEEETHHHHTTCCHHHHHHHHTTTCCHHHHH
T ss_pred CcchhhccCCHHHHHHHHHHHHHHHHHHhccccccccccccccCCCcccEEEEccHHHhhhhHHHHHHHHhccCcHHHHh
Confidence 388999999999999988865 45 789999999997 778889998 89999999999
Q ss_pred cchhHHHHhhhcCCCCccchhhHHHhhhhhhcc----CccEEeecCchhHHHHHHHHHHHHhcccc---Ccc---CC---
Q psy3680 139 HMPTYVEKCAELKQSPTGLFLYPVLQAADILLY----KATHIPAGLDQIHNINLANHLTQLFNNKF---DKI---FP--- 205 (422)
Q Consensus 139 r~~~~K~k~~~~~~~~~gl~~YPvLqAaDil~~----~a~~vpvG~DQ~~hielaRdia~r~n~~~---g~~---f~--- 205 (422)
++.+||.|.+..+++++|+|+||+||||||+++ +|++||||+||+|||++|||+|+|||+.| |+. ++
T Consensus 195 ~~~~~k~r~~~~~~is~gef~YPlLQAaDil~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~ 274 (392)
T 1y42_X 195 SRDTVKNKMTQGDGVSFAEFTYPIMQGWDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTA 274 (392)
T ss_dssp SSHHHHHTTSSSSCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSG
T ss_pred hhhHHHHHhcCCCCcccHHHHHHHHHHHHHHHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccc
Confidence 999999988655789999999999999999987 69999999999999999999999999877 221 22
Q ss_pred -CCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC---CHHHHHHHhhhhccCCCCccccCCCCCcchhhHHHHH
Q psy3680 206 -IPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD---PPEVIVRKCKKALTDCTSAVTYDPENRPAVSNLITLH 281 (422)
Q Consensus 206 -~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D---sp~~I~kKI~~A~tD~~~~~~~~p~~~p~~~~l~~~~ 281 (422)
.|...+ .+++||+++| +|||||++| +|||+| +|+++++||+++ +|+ ++.+++.+|
T Consensus 275 ~~~~~~l---~~pll~~ldG--~KMSKS~~n---aI~L~d~~tsp~~i~qki~~~-~D~------------~v~~~l~~f 333 (392)
T 1y42_X 275 LDECVGF---TVPLLTDSSG--AKFGKSAGN---AIWLDPYQTSVFDFYGYFVRR-SDQ------------EVENLLKLF 333 (392)
T ss_dssp GGSCEEE---ECCCCBCTTC--CBTTBCSSS---BCBSSTTTSCHHHHHHHHHTC-CTT------------THHHHHHHH
T ss_pred cCCcccc---ccccCcCCch--hhccCCCCC---eeeccCCCCCHHHHHHHHHcC-Cch------------hHHHHHHHH
Confidence 223333 4899999963 799999876 999999 999999999995 442 566777776
Q ss_pred HhcCCCCHHHHHHHHh-CCChhHHHHHHHHHHHhhcCcHHHHHHH
Q psy3680 282 ALCTNQLPQDICTQVK-HLNTGQYKLLLADVLVEKFKPIRDEIEY 325 (422)
Q Consensus 282 ~~~t~~~~eei~~~~~-~~~~~dlK~~Lae~i~~~l~pir~~~~~ 325 (422)
..++.+++++++++|. +.+++++|+.||++|++++++.++..+.
T Consensus 334 t~l~~~ei~~l~~~~~~g~~~~~~K~~LA~~v~~~lhg~~~~~~a 378 (392)
T 1y42_X 334 TFMPISEITKTMEEHIKDPSKRVAQHTLAREVVTLVHGKQEASAA 378 (392)
T ss_dssp CCCCHHHHHHHHHHHHHCGGGCHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HhCChhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 6666667778888886 4689999999999999999999887643
No 34
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=2.3e-58 Score=474.22 Aligned_cols=282 Identities=14% Similarity=0.111 Sum_probs=242.1
Q ss_pred HHHHhhhhcccch---hhhhhhhccccCCCcEEEEeecCCCc-cchhhHHHHHHHHHHHHHcCCcEEEEeeCceeec-cC
Q psy3680 9 LLTHMKKFVNSSG---QQIRHYSDHKISFPQRIFSGIQPTGT-LHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSIT-IK 83 (422)
Q Consensus 9 ~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~i~tGi~PTG~-lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt-~~ 83 (422)
+-.-.+|.+-++. +.++.++ .+++.++|+||+|||. +|||||++ +.+|++||++||+++++|||+||+| +|
T Consensus 6 ~~~l~~Rg~~~~~~~~~~L~~~L---~~~~~~iy~G~dPTg~sLHlGh~v~-l~~~~~lQ~~G~~~~~lIgd~ta~igdp 81 (420)
T 1jil_A 6 IEDLKWRGLIYQQTDEQGIEDLL---NKEQVTLYCGADPTADSLHIGHLLP-FLTLRRFQEHGHRPIVLIGGGTGMIGDP 81 (420)
T ss_dssp HHHHHHTTCCCCBSCHHHHHHHH---HHSCCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCC
T ss_pred HHHHHHcCchhhcCCHHHHHHHH---cCCCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCC
Confidence 3344566666633 4677777 4678999999999995 99999996 7899999999999999999999999 56
Q ss_pred C---------CHHHHHHHHHHHHHHHHHcCCCC---CceEEEEcCCCc-chhHHHHHH--hhccchhhhhcchhHHHHhh
Q psy3680 84 Q---------KHKDLKENIQLMAASLLACGIDP---QKSILFQQSQVP-EHTQLAWVL--TCLCTVNRLNHMPTYVEKCA 148 (422)
Q Consensus 84 ~---------~~~~i~~~~~~i~a~~lA~Gldp---~k~~i~~qSdi~-e~~el~w~l--~~~~~~~~l~r~~~~K~k~~ 148 (422)
. ++++|++|+..+.++++++ +|| +++++|+||+|+ ++.++.|+. ++++++++|.++++||.|.
T Consensus 82 ~gk~~~R~~l~~e~i~~n~~~~~~~~~~~-ld~~~~~k~~i~~ns~w~~~~~~l~~l~~~~~~~tv~~m~~~~~~k~r~- 159 (420)
T 1jil_A 82 SGKSEERVLQTEEQVDKNIEGISKQMHNI-FEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRL- 159 (420)
T ss_dssp TTCSSCCCCCCHHHHHHHHHHHHHHHHHH-SCCSSSSSCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTCGGGHHHH-
T ss_pred CccccccccCCHHHHHHHHHHHHHHHHHH-hCCCCCCceEEEEchhhhhhccHHHHHHHHhccccHHHHhcchhhhhhc-
Confidence 4 9999999999999999999 888 999999999996 578999985 8999999999999999988
Q ss_pred hcCCCCccchhhHHHhhhhhhcc----CccEEeecCchhHHHHHHHHHHHHh-ccccCccCCCCeecccCCCCcccccCC
Q psy3680 149 ELKQSPTGLFLYPVLQAADILLY----KATHIPAGLDQIHNINLANHLTQLF-NNKFDKIFPIPQLLPQDESAGKVKSLK 223 (422)
Q Consensus 149 ~~~~~~~gl~~YPvLqAaDil~~----~a~~vpvG~DQ~~hielaRdia~r~-n~~~g~~f~~P~~li~~~~~~~lp~L~ 223 (422)
.+++++|+|+||+||||||+++ +|++||||.|||+|+++|||+|+|| |+ + |...+ .+|+||+++
T Consensus 160 -~~~is~~ef~YplLQaaD~l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~--~-----~~~~l---~~pll~~ld 228 (420)
T 1jil_A 160 -EHGISYTEFTYTILQAIDFGHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQ--T-----DAYGL---TIPLVTKSD 228 (420)
T ss_dssp -TTTCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHCC--C-----CCEEE---EECCCBCTT
T ss_pred -cCCcchHHHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCC--C-----CeeEe---ecccccCCc
Confidence 3679999999999999999999 9999999999999999999999999 85 2 22333 377889996
Q ss_pred CCCcccccCCCCCCCcEeccC---CHHHHHHHhhhhccCCCCccccCCCCCcchhhHHHHHHhcCCCCHHHHHHHHh-CC
Q psy3680 224 DPSKKMSKSDLDSNSKIEITD---PPEVIVRKCKKALTDCTSAVTYDPENRPAVSNLITLHALCTNQLPQDICTQVK-HL 299 (422)
Q Consensus 224 ~~~~KMSKS~~n~~s~I~L~D---sp~~I~kKI~~A~tD~~~~~~~~p~~~p~~~~l~~~~~~~t~~~~eei~~~~~-~~ 299 (422)
| +|||||++| +|||+| +|+++++||+++ +| +++.+++.+|..++.+++++++++|. +.
T Consensus 229 -G-~KMSKS~~n---aI~L~d~~tsp~~i~~ki~~~-~D------------~~v~~~l~~~t~~~~~ei~~l~~~~~~g~ 290 (420)
T 1jil_A 229 -G-KKFGKSESG---AVWLDAEKTSPYEFYQFWINQ-SD------------EDVIKFLKYFTFLGKEEIDRLEQSKNEAP 290 (420)
T ss_dssp -S-CBTTBCSSS---BCBSSTTTSCHHHHHHHHHTC-CH------------HHHHHHHHHHCCCCHHHHHHHHHHHHHCG
T ss_pred -c-ccccCCCCC---eEecCCCCCCHHHHHHHHhcC-Cc------------hhHHHHHHHHHcCCHHHHHHHHHHHhcCC
Confidence 3 799999976 999999 999999999995 43 24566666666555567777888886 56
Q ss_pred ChhHHHHHHHHHHHhhcCcHHHHHHH
Q psy3680 300 NTGQYKLLLADVLVEKFKPIRDEIEY 325 (422)
Q Consensus 300 ~~~dlK~~Lae~i~~~l~pir~~~~~ 325 (422)
+++++|+.||++|++++|+.++..+.
T Consensus 291 ~~~~~K~~La~~v~~~~hg~~~~~~a 316 (420)
T 1jil_A 291 HLREAQKTLAEEVTKFIHGEDALNDA 316 (420)
T ss_dssp GGCHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 99999999999999999998876654
No 35
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=2.8e-58 Score=472.71 Aligned_cols=280 Identities=13% Similarity=0.095 Sum_probs=234.2
Q ss_pred hhhhcccch---hhhhhhhccccCCCcEEEEeecCCCc-cchhhHHHHHHHHHHHHHcCCcEEEEeeCceeec-cCC---
Q psy3680 13 MKKFVNSSG---QQIRHYSDHKISFPQRIFSGIQPTGT-LHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSIT-IKQ--- 84 (422)
Q Consensus 13 ~~~~~~~~~---~~i~~~~~~~~~~~~~i~tGi~PTG~-lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt-~~~--- 84 (422)
.+|.+-++. +.+++++ .+++.++|+||+|||. +|||||++ +.+|++||++||+++++|||+||+| +|.
T Consensus 8 ~~Rg~~~~~~~~~~L~~~L---~~~~~~iy~G~dPTg~sLHlGh~v~-l~~l~~lQ~~G~~~i~lIgd~ta~igdpsgk~ 83 (419)
T 2ts1_A 8 QWRGLVNQTTDEDGLRKLL---NEERVTLYCGFDPTADSLHIGHLAT-ILTMRRFQQAGHRPIALVGGATGLIGDPSGKK 83 (419)
T ss_dssp HHHTCCSEESCHHHHHHHH---HHSCCEEEEEECCSSSSCBGGGHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCS
T ss_pred HHcCchhhcCCHHHHHHHH---cCCCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCCcc
Confidence 445555533 3677777 3678999999999995 99999996 7899999999999999999999999 664
Q ss_pred ------CHHHHHHHHHHH---HHHHHHcCCCCCceEEEEcCCCcchhHHHH-H--HhhccchhhhhcchhHHHHhhhcCC
Q psy3680 85 ------KHKDLKENIQLM---AASLLACGIDPQKSILFQQSQVPEHTQLAW-V--LTCLCTVNRLNHMPTYVEKCAELKQ 152 (422)
Q Consensus 85 ------~~~~i~~~~~~i---~a~~lA~Gldp~k~~i~~qSdi~e~~el~w-~--l~~~~~~~~l~r~~~~K~k~~~~~~ 152 (422)
++++|++|+..+ ++.|+++|+||++++||+||+|+++..+.| + +++++++++|.+++.+|.|. .++
T Consensus 84 ~~R~~l~~e~i~~n~~~~~~q~~~~L~~g~dp~k~~i~~ns~w~~~~~~~~~l~~~~~~~tv~rm~~~~~~k~r~--~~~ 161 (419)
T 2ts1_A 84 SERTLNAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRI--ETG 161 (419)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHTTSSCSSCSSSCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTSHHHHTTT--TTC
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEchhhhhhchHHHHHHHHhcccCHHHHhccchhhhcc--CCC
Confidence 999999999776 556788999999999999999987655544 4 36899999999999999877 367
Q ss_pred CCccchhhHHHhhhhhhcc----CccEEeecCchhHHHHHHHHHHHHh-ccccCccCCCCeecccCCCCcccccCCCCCc
Q psy3680 153 SPTGLFLYPVLQAADILLY----KATHIPAGLDQIHNINLANHLTQLF-NNKFDKIFPIPQLLPQDESAGKVKSLKDPSK 227 (422)
Q Consensus 153 ~~~gl~~YPvLqAaDil~~----~a~~vpvG~DQ~~hielaRdia~r~-n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~ 227 (422)
+++|+|+||+||||||+++ +|++||||.|||||++++||+|+|| |+. |...+ .+|+||+++ | +
T Consensus 162 is~~ef~YPlLQaaDil~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~-------~~~~l---t~pll~~ld-G-~ 229 (419)
T 2ts1_A 162 ISFTEFSYMMLQAYDFLRLYETEGCRLQIGGSDQWGNITAGLELIRKTKGEA-------RAFGL---TIPLVTKAD-G-T 229 (419)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHC---------CCEEE---EECCCCCTT-S-C
T ss_pred cchHHHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCC-------Ceeec---ccccccCCC-c-c
Confidence 9999999999999999999 9999999999999999999999999 852 22233 377889996 3 7
Q ss_pred ccccCCCCCCCcEeccC---CHHHHHHHhhhhccCCCCccccCCCCCcchhhHHHHHHhcCCCCHHHHHHHHh-CCChhH
Q psy3680 228 KMSKSDLDSNSKIEITD---PPEVIVRKCKKALTDCTSAVTYDPENRPAVSNLITLHALCTNQLPQDICTQVK-HLNTGQ 303 (422)
Q Consensus 228 KMSKS~~n~~s~I~L~D---sp~~I~kKI~~A~tD~~~~~~~~p~~~p~~~~l~~~~~~~t~~~~eei~~~~~-~~~~~d 303 (422)
|||||++| +|||+| +|+++++||+++ +| +++.+++.+|..++.++++++++.|. +.++++
T Consensus 230 KMSKS~~n---aI~L~d~~tsp~~i~qki~~~-~D------------~~v~~~l~l~t~~~~~ei~~l~~~~~~g~~~~~ 293 (419)
T 2ts1_A 230 KFGKTESG---TIWLDKEKTSPYEFYQFWINT-DD------------RDVIRYLKYFTFLSKEEIEALEQELREAPEKRA 293 (419)
T ss_dssp CTTCCSSC---CCBSSTTTSCHHHHHHHHHTC-CH------------HHHHHHHHHHCCCCHHHHHHHHHHHHHCTTSCH
T ss_pred cccCCCCC---eEecCCCCCCHHHHHHHHhcC-Cc------------hhHHHHHHHHHcCCHHHHHHHHHHHHccCCHHH
Confidence 99999876 999999 999999999995 43 24566666666555567777888886 679999
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHH
Q psy3680 304 YKLLLADVLVEKFKPIRDEIEYL 326 (422)
Q Consensus 304 lK~~Lae~i~~~l~pir~~~~~l 326 (422)
+|+.||++|++++|+..+..+..
T Consensus 294 ~K~~LA~~v~~~~hg~~~~~~a~ 316 (419)
T 2ts1_A 294 AQKTLAEEVTKLVHGEEALRQAI 316 (419)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHH
Confidence 99999999999999998876544
No 36
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=6.1e-47 Score=409.31 Aligned_cols=260 Identities=15% Similarity=0.173 Sum_probs=216.4
Q ss_pred cCCCcEEEEeecCCCccchhhHHHHHHHHHHHHHc--CCcEEEEeeCceeec-cC--CCHHHHHHHHHHHHHHHHHcCCC
Q psy3680 32 ISFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNK--GEDVIFCIVDLHSIT-IK--QKHKDLKENIQLMAASLLACGID 106 (422)
Q Consensus 32 ~~~~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~--g~~~~ilIaD~hAlt-~~--~~~~~i~~~~~~i~a~~lA~Gld 106 (422)
+..+..|+++- |||++||||++|+++.+.++|+. |++++|+|||+||++ ++ .++++++++..+++++|+|+|+|
T Consensus 379 ~~~~l~~~~~p-s~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~d 457 (690)
T 3p0j_A 379 PAKPHACMWMP-ALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLP 457 (690)
T ss_dssp CSSCEEEEECC-CCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCcceEEecC-CCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 45667788888 99999999999965548888887 999999999999999 55 79999999999999999999999
Q ss_pred CCceEEEEcCCCcch-hHHHHH----HhhccchhhhhcchhHHHHhhhcCCCCccchhhHHHhhhhhhccCccEEeecCc
Q psy3680 107 PQKSILFQQSQVPEH-TQLAWV----LTCLCTVNRLNHMPTYVEKCAELKQSPTGLFLYPVLQAADILLYKATHIPAGLD 181 (422)
Q Consensus 107 p~k~~i~~qSdi~e~-~el~w~----l~~~~~~~~l~r~~~~K~k~~~~~~~~~gl~~YPvLqAaDil~~~a~~vpvG~D 181 (422)
| +++|++||+|+.. ..++|. +++.++++++.++. ..+..++|+|+||+||||||+.+++|++|||.|
T Consensus 458 ~-k~~fv~~S~~~~~~~~~~~~~vi~la~~~tl~r~~~~~-------~~~~~~i~~~~YPlmQaaDi~~l~aDi~~gG~D 529 (690)
T 3p0j_A 458 S-SVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELY-------GGEVRNAGQVIAALMRVATALMLSVSHVISTSL 529 (690)
T ss_dssp T-TSEEEEHHHHHHHTHHHHHHHHHHHHTTSCHHHHHHHT-------TSCCSSHHHHHHHHHHHHHHHHTTCSEEEECST
T ss_pred c-CeEEEECCchhccchhhHHHHHHHHHHhhhHHHHHHHh-------CCCCcchHHHHHHHHHHhhhhccCCCEEecccc
Confidence 8 8999999998654 245664 68899999988653 135689999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHHHHhhhhccCCC
Q psy3680 182 QIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCT 261 (422)
Q Consensus 182 Q~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~kKI~~A~tD~~ 261 (422)
|++|++|+||+++++++ |..+ .++++|+|++|+.+||||.++ |+|+|+|+|++|++||++|||++.
T Consensus 530 Q~~~~~LaRd~~~~~~~--------~~~~----~~~~~P~L~gp~~~~~~~s~~--~~I~l~D~~~~i~~KI~kA~c~p~ 595 (690)
T 3p0j_A 530 DGHINAFAREYTKERID--------CVQT----LEGRIPALHRPGAAPAVLGAD--DVLYLDDNDMDIRRKIKKAYSAPN 595 (690)
T ss_dssp TTTTTHHHHHHTTTCSE--------EEEC----CCCSSCCSSCCCC-------C--CSCBTTCCHHHHHHHHHHSCCCTT
T ss_pred cHHHHHHHHHHHHhccC--------cccc----cccccccCCCcccccCCCCCC--CeeeccCCHHHHHHHHHHhcCCCC
Confidence 99999999999998653 3333 378999999887777777655 899999999999999999999983
Q ss_pred CccccCCCCCcchhhHHHHHHhc-------------------CCCCHHHHHHHHh--CCChhHHHHHHHHHHHhhcCcHH
Q psy3680 262 SAVTYDPENRPAVSNLITLHALC-------------------TNQLPQDICTQVK--HLNTGQYKLLLADVLVEKFKPIR 320 (422)
Q Consensus 262 ~~~~~~p~~~p~~~~l~~~~~~~-------------------t~~~~eei~~~~~--~~~~~dlK~~Lae~i~~~l~pir 320 (422)
+++|| ++.|+..+ +..++++++++|. .++|+|+|++|++.|+++|+|+|
T Consensus 596 --ve~np--------~l~~~~~~~~~~~~~~i~r~~~~Gg~~~~~~~eel~~~y~~G~lhp~dlK~~la~~l~~~l~p~R 665 (690)
T 3p0j_A 596 --EEANP--------VISVAQHLLAQHGALSIERGEANGGNVSYNTPEALVADCGSGALHPADLKAAVLQLLLDRSAQAR 665 (690)
T ss_dssp --CSCSH--------HHHHHHHHHHHHSCEEECCCTTTTCCEEESSHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCCh--------HHHHHHHHhccCCceEEechhhhCCCCCccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45554 44554432 2368999999997 38999999999999999999999
Q ss_pred HHHH
Q psy3680 321 DEIE 324 (422)
Q Consensus 321 ~~~~ 324 (422)
++|+
T Consensus 666 e~~~ 669 (690)
T 3p0j_A 666 ALLN 669 (690)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9997
No 37
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.29 E-value=3.4e-12 Score=125.65 Aligned_cols=197 Identities=18% Similarity=0.283 Sum_probs=116.7
Q ss_pred EEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcC
Q psy3680 37 RIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQQS 116 (422)
Q Consensus 37 ~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qS 116 (422)
+.=.--.|||.+||||+.+++.+|+..+..|.+.++-|.|.. +.....+....+..++.++|++++.. +++||
T Consensus 7 ~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~g~~ilRieDtD------~~R~~~~~~~~I~~dL~~LGl~~D~~-~~~qS 79 (298)
T 1nzj_A 7 IGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDID------PPREVPGAAETILRQLEHYGLHWDGD-VLWQS 79 (298)
T ss_dssp EEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCSC------GGGSCTTHHHHHHHHHHHTTCCCSSC-CEEGG
T ss_pred EEEECcCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEecCC------chhhHHHHHHHHHHHHHHcCCCCCCC-Ceeee
Confidence 333445788999999999999999998887778888888853 22344667888999999999999875 68999
Q ss_pred CCcch-hHHH-HH------Hhhccchhhhhcch-----------------hHHHHhhh----cCCCCccchhhHH-Hhhh
Q psy3680 117 QVPEH-TQLA-WV------LTCLCTVNRLNHMP-----------------TYVEKCAE----LKQSPTGLFLYPV-LQAA 166 (422)
Q Consensus 117 di~e~-~el~-w~------l~~~~~~~~l~r~~-----------------~~K~k~~~----~~~~~~gl~~YPv-LqAa 166 (422)
+..+. .+.. .+ ..|.+|..++.+.. .++-|+.. .+++-.|.+.++. ...-
T Consensus 80 er~~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~ 159 (298)
T 1nzj_A 80 QRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLARE 159 (298)
T ss_dssp GCHHHHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHS
T ss_pred CCHHHHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccCCC
Confidence 95442 2221 22 34888888887531 11111110 0112234444444 3555
Q ss_pred hhhccCcc-------------------EEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCc
Q psy3680 167 DILLYKAT-------------------HIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSK 227 (422)
Q Consensus 167 Dil~~~a~-------------------~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~ 227 (422)
|++++++| +|.-|.|+..+...-..+.+.++. +.|...+ .++|.+.+ ++
T Consensus 160 D~VL~R~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG~------~~p~~~H----~pll~~~~--g~ 227 (298)
T 1nzj_A 160 DFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGW------KVPDYIH----LPLALNPQ--GA 227 (298)
T ss_dssp CCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTC------CCCEEEE----ECBCCC------
T ss_pred CEEEECCCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcCC------CCCeEEE----eeeeECCC--CC
Confidence 66665544 444499999888777777777763 3465554 67777764 58
Q ss_pred ccccCCCCCCCcEeccCCHHHHHHHhh
Q psy3680 228 KMSKSDLDSNSKIEITDPPEVIVRKCK 254 (422)
Q Consensus 228 KMSKS~~n~~s~I~L~Dsp~~I~kKI~ 254 (422)
|||||.+| ..|.-.+...-+...+.
T Consensus 228 KLSKR~g~--~~v~~~~~~~~~~~~l~ 252 (298)
T 1nzj_A 228 KLSKQNHA--PALPKGDPRPVLIAALQ 252 (298)
T ss_dssp -----------CCCSSCCHHHHHHHHH
T ss_pred cccccCCc--cChhcCCccHHHHHHHH
Confidence 99999986 33433344433433333
No 38
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.03 E-value=1.1e-10 Score=121.90 Aligned_cols=200 Identities=18% Similarity=0.210 Sum_probs=134.5
Q ss_pred CcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceE---
Q psy3680 35 PQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSI--- 111 (422)
Q Consensus 35 ~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~--- 111 (422)
+.++=..=.|||.+||||+..++.+|...+..|.++++-|-|.- ......+....|..++..+|++++...
T Consensus 25 ~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD------~~R~~~~~~~~I~~dL~wlGl~wDe~~~~g 98 (488)
T 3afh_A 25 LVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTD------TERSSREYEQQILESLRWCGLDWDEGPDIG 98 (488)
T ss_dssp CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCC------TTTCCHHHHHHHHHHHHHTTCCCSBBTTTB
T ss_pred CceEEECCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeCC------cccccHHHHHHHHHHHHHcCCCCCcCCCCC
Confidence 35555667889999999999999999988887778888887763 223455677888999999999999753
Q ss_pred ----EEEcCCCcchh-HHH-HH------Hhhccchhhhhcc--hhHHH---Hhhhc----------------CCCCccch
Q psy3680 112 ----LFQQSQVPEHT-QLA-WV------LTCLCTVNRLNHM--PTYVE---KCAEL----------------KQSPTGLF 158 (422)
Q Consensus 112 ----i~~qSdi~e~~-el~-w~------l~~~~~~~~l~r~--~~~K~---k~~~~----------------~~~~~gl~ 158 (422)
.|+||+-.+.. +.. .+ .-|.+|..++.+. +.|.. +.+.. .+.-.|.+
T Consensus 99 G~~gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v~G~~ 178 (488)
T 3afh_A 99 GDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYM 178 (488)
T ss_dssp CTTCCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETTTEEE
T ss_pred CCCCCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEeccceeE
Confidence 68999965432 222 12 2488888887752 11211 00000 00112333
Q ss_pred hhHHHhhhhhhc-------------------cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCccc
Q psy3680 159 LYPVLQAADILL-------------------YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKV 219 (422)
Q Consensus 159 ~YPvLqAaDil~-------------------~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~l 219 (422)
.++.-+.-|+++ .+.++|.-|.|+..|...-.-+.+.++. +.|+..+ .++|
T Consensus 179 ~~~~~~~~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG~------~~P~f~H----~pli 248 (488)
T 3afh_A 179 EFDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGW------EAPVFMH----IPLI 248 (488)
T ss_dssp EEEGGGSCCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTC------CCCEEEE----ECCE
T ss_pred eecCCCCCCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcCC------CCCeEEE----Eeee
Confidence 333333334443 4567777799999999999999898873 4566555 6778
Q ss_pred ccCCCCCcccccCCCCCCCcEeccC------CHHHHHHHhhhh
Q psy3680 220 KSLKDPSKKMSKSDLDSNSKIEITD------PPEVIVRKCKKA 256 (422)
Q Consensus 220 p~L~~~~~KMSKS~~n~~s~I~L~D------sp~~I~kKI~~A 256 (422)
.+.+ ++||||++++ +.|.+ .|+.|...+...
T Consensus 249 ~~~~--g~KLSKR~g~----~~l~~~r~~G~~peal~n~l~~l 285 (488)
T 3afh_A 249 LGSD--RTPLSKRHGA----TSVEHFRREGILSRALMNYLALL 285 (488)
T ss_dssp ECTT--SSBCCTTTSC----CBHHHHHHHTCCHHHHHHHHHHT
T ss_pred eCCC--CCcccCcCCc----ccHHHHHHCCCCHHHHHHHHHHh
Confidence 8864 4899999885 23433 588888888774
No 39
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.03 E-value=9.8e-11 Score=122.53 Aligned_cols=204 Identities=21% Similarity=0.206 Sum_probs=135.8
Q ss_pred cEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCce-----
Q psy3680 36 QRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKS----- 110 (422)
Q Consensus 36 ~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~----- 110 (422)
.++=.-=.|||.+||||+..++.+|...+..|-+.++-|-|.- ......+....|..++..+|++++..
T Consensus 7 vr~RFAPsPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDtD------~~R~~~~~~~~I~~~L~wlGl~wDegp~~gG 80 (498)
T 2ja2_A 7 VRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTD------AQRDSEESYLALLDALRWLGLDWDEGPEVGG 80 (498)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCC------TTTCCHHHHHHHHHHHHHHTCCCSBBTTTBC
T ss_pred eeEEECcCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCC------CcccChHHHHHHHHHHHHcCCCcCCCcCcCC
Confidence 3443444788999999999999999988887766555587763 22345577788899999999999874
Q ss_pred --EEEEcCCCcchhHHH--HH------Hhhccchhhhhcc---------hhHHHHhhh----------cCC--------C
Q psy3680 111 --ILFQQSQVPEHTQLA--WV------LTCLCTVNRLNHM---------PTYVEKCAE----------LKQ--------S 153 (422)
Q Consensus 111 --~i~~qSdi~e~~el~--w~------l~~~~~~~~l~r~---------~~~K~k~~~----------~~~--------~ 153 (422)
.+|+||+..+...-+ .+ ..|++|..++.++ +.|....+. .++ +
T Consensus 81 ~~~~~~QS~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~k~ 160 (498)
T 2ja2_A 81 PYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRM 160 (498)
T ss_dssp TTCCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEECC
T ss_pred CCCCeeeecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEEEC
Confidence 579999976643322 22 3589998888643 122221110 011 1
Q ss_pred ----------CccchhhHHHhhhhhhccC-------------------ccEEeecCchhHHHHHHHHHHHHhccccCccC
Q psy3680 154 ----------PTGLFLYPVLQAADILLYK-------------------ATHIPAGLDQIHNINLANHLTQLFNNKFDKIF 204 (422)
Q Consensus 154 ----------~~gl~~YPvLqAaDil~~~-------------------a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f 204 (422)
-.|.+.++.-+.-|+++++ .++|.-|.|+..+...-+-+.+.+|. +|--+
T Consensus 161 ~~~~~~~~D~v~G~i~~~~~~~~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~-~g~g~ 239 (498)
T 2ja2_A 161 PDDDLAWNDLVRGPVTFAAGSVPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIR-IGVAE 239 (498)
T ss_dssp CSSCEEEEETTTEEEEECTTCSCCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHH-TTSCC
T ss_pred CCCceEEEecccceEeecccccCcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHh-hcCCC
Confidence 1233556555556666654 55555599999999999999999965 43113
Q ss_pred CCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC------CHHHHHHHhhhh
Q psy3680 205 PIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD------PPEVIVRKCKKA 256 (422)
Q Consensus 205 ~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D------sp~~I~kKI~~A 256 (422)
+.|+..+ .++|.+.+ ++||||+.++ +.|.+ .|+.|...+...
T Consensus 240 ~~P~~~h----~plil~~~--g~KLSKR~g~----~~l~~~r~~G~~peAl~~~l~~l 287 (498)
T 2ja2_A 240 RIPKFAH----LPTVLGEG--TKKLSKRDPQ----SNLFAHRDRGFIPEGLLNYLALL 287 (498)
T ss_dssp CCCEEEE----ECCEECSS--SSBCCTTSGG----GBHHHHHHHTCCHHHHHHHHHTS
T ss_pred CCCeEEE----eeeeECCC--CCcccccCCc----ccHHHHHhCCCCHHHHHHHHHHh
Confidence 4565554 67777764 4799999875 23433 588888887774
No 40
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.00 E-value=3.1e-10 Score=118.08 Aligned_cols=194 Identities=17% Similarity=0.211 Sum_probs=132.2
Q ss_pred eecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceE-------EE
Q psy3680 41 GIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSI-------LF 113 (422)
Q Consensus 41 Gi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~-------i~ 113 (422)
.=.|||.+||||+..++.+|...+..|.++++-|-|.- ......+....|..++..+|++++... .|
T Consensus 7 aPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD------~~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~ 80 (468)
T 1j09_A 7 APSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTD------RARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPY 80 (468)
T ss_dssp CCCCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCCC------TTSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCC
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEeCcCC------CcccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCe
Confidence 34689999999999999999988888777777777763 122345667788899999999999753 48
Q ss_pred EcCCCcch-hHHHH-H------Hhhccchhhhhcch-------------hHHH---HhhhcC-----------------C
Q psy3680 114 QQSQVPEH-TQLAW-V------LTCLCTVNRLNHMP-------------TYVE---KCAELK-----------------Q 152 (422)
Q Consensus 114 ~qSdi~e~-~el~w-~------l~~~~~~~~l~r~~-------------~~K~---k~~~~~-----------------~ 152 (422)
+||+..+. .+..- + ..|.+|-.++.++- +..+ +.+... +
T Consensus 81 ~QS~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~~D 160 (468)
T 1j09_A 81 RQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKD 160 (468)
T ss_dssp BGGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEEEE
T ss_pred eccCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceEEEe
Confidence 99996553 22221 2 24888888875421 1111 111100 0
Q ss_pred CCccchhhHHHhhhhhhccCccEEee-------------------cCchhHHHHHHHHHHHHhccccCccCCCCeecccC
Q psy3680 153 SPTGLFLYPVLQAADILLYKATHIPA-------------------GLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQD 213 (422)
Q Consensus 153 ~~~gl~~YPvLqAaDil~~~a~~vpv-------------------G~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~ 213 (422)
.-.|.+.+|..+.-|++++++|..|. |.|+..|...-.-+.+.++. +.|+..+
T Consensus 161 ~~~G~~~~~~~~~~D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~------~~p~~~h-- 232 (468)
T 1j09_A 161 ELRGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGW------EAPRFYH-- 232 (468)
T ss_dssp TTTEEEEEEGGGSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTC------CCCEEEE--
T ss_pred ccceeEeecccCCCCeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcCC------CCCeEEE--
Confidence 11244667776667887766555555 99999999999999888873 3465444
Q ss_pred CCCcccccCCCCCcccccCCCCCCCcEeccC------CHHHHHHHhhhh
Q psy3680 214 ESAGKVKSLKDPSKKMSKSDLDSNSKIEITD------PPEVIVRKCKKA 256 (422)
Q Consensus 214 ~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D------sp~~I~kKI~~A 256 (422)
.++|.+.+ ++||||+.++ . .|.+ .|+.|...+...
T Consensus 233 --~~li~~~~--g~klSKR~g~--~--~l~~~~~~G~~peal~~~l~~l 273 (468)
T 1j09_A 233 --MPLLRNPD--KTKISKRKSH--T--SLDWYKAEGFLPEALRNYLCLM 273 (468)
T ss_dssp --ECCCBCTT--SCBCCTTTSC--C--BHHHHHHTTCCHHHHHHHHHHH
T ss_pred --eeeeeCCC--CCccccccch--h--hHHHHHHCCCCHHHHHHHHHHh
Confidence 56667764 5799999986 2 3332 588888888773
No 41
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=98.91 E-value=4.6e-10 Score=119.77 Aligned_cols=200 Identities=19% Similarity=0.223 Sum_probs=131.1
Q ss_pred CcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceE---
Q psy3680 35 PQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSI--- 111 (422)
Q Consensus 35 ~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~--- 111 (422)
+.++=..=.|||.+||||+.+++.+|...+..|.++++-|.|. ++ ...+......|..++..+|++++...
T Consensus 129 ~v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDt----D~--~r~~~~~~~~I~~dL~wlGl~~D~~~~~g 202 (592)
T 3al0_C 129 LVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDT----DT--ERSSREYEQQILESLRWCGLDWDEGPDIG 202 (592)
T ss_dssp CCEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCC----CS--SSCCHHHHHHHHHHHHHTTCCCSBBTTTB
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecCc----Ch--hhccHHHHHHHHHHHHHcCCCCCCCCCcC
Confidence 4556566889999999999999999988887777888888883 22 22355667788999999999998753
Q ss_pred ----EEEcCCCcchh-HHH-HH------Hhhccchhhhhcc--hhHHH---------------Hhh----hcCCCCccch
Q psy3680 112 ----LFQQSQVPEHT-QLA-WV------LTCLCTVNRLNHM--PTYVE---------------KCA----ELKQSPTGLF 158 (422)
Q Consensus 112 ----i~~qSdi~e~~-el~-w~------l~~~~~~~~l~r~--~~~K~---------------k~~----~~~~~~~gl~ 158 (422)
.|+||+..+.. +.. .+ ..|++|..++.+. +.|.. |+. .....-.|.+
T Consensus 203 G~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~~ 282 (592)
T 3al0_C 203 GDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYM 282 (592)
T ss_dssp CTTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCSSCCEECCTTTCSE
T ss_pred CCCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCCCCceeeeccccee
Confidence 68999965432 221 22 2488887777652 11111 010 0011112333
Q ss_pred hhHHHhhhhhhc-------------------cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCccc
Q psy3680 159 LYPVLQAADILL-------------------YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKV 219 (422)
Q Consensus 159 ~YPvLqAaDil~-------------------~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~l 219 (422)
.+|.-+.-|+++ .+.++|.-|.|+..|...-+-+.+.++. +.|+..+ .++|
T Consensus 283 ~~~~~~~~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~------~~P~~~h----lpli 352 (592)
T 3al0_C 283 EFDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGW------EAPVFMH----IPLI 352 (592)
T ss_dssp ECCSSSSCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTTC------CCCBCCE----ECCC
T ss_pred eeccccCCCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhCC------CCCeEEE----eeee
Confidence 333333334443 3566666699999999998888877762 3454443 6777
Q ss_pred ccCCCCCcccccCCCCCCCcEeccC------CHHHHHHHhhhh
Q psy3680 220 KSLKDPSKKMSKSDLDSNSKIEITD------PPEVIVRKCKKA 256 (422)
Q Consensus 220 p~L~~~~~KMSKS~~n~~s~I~L~D------sp~~I~kKI~~A 256 (422)
.+.+ ++||||+.++ +.|.+ .|+.|...+...
T Consensus 353 ~~~~--g~KLSKR~g~----~~l~~~~~~G~~peal~~~l~~l 389 (592)
T 3al0_C 353 LGSD--RTPLSKRHGA----TSVEHFRREGILSRALMNYLALL 389 (592)
T ss_dssp BCTT--SSBCCTTTCS----SBHHHHHHTTCCHHHHHHHHTTT
T ss_pred eCCC--CCcccccCCc----ccHHHHHHCCCCHHHHHHHHHHh
Confidence 7764 5899999885 23332 588888888773
No 42
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=98.85 E-value=1.1e-08 Score=106.96 Aligned_cols=196 Identities=22% Similarity=0.257 Sum_probs=131.2
Q ss_pred EEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCC
Q psy3680 38 IFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQQSQ 117 (422)
Q Consensus 38 i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSd 117 (422)
+=..=.|||.+||||...++.+|+..+..|.+.++-|-|.-. .....+....+..++..+|++++. ..|+||+
T Consensus 4 ~RFAPSPtG~lHiG~artal~n~l~Ar~~~G~filRieDtD~------~R~~~~~~~~i~~dL~wLGl~wde-~~~~QS~ 76 (492)
T 2cfo_A 4 VRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDR------ERSRPEYTENILEGLQWLGLTWDE-GPYFQSD 76 (492)
T ss_dssp EEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCSS------SSCCHHHHHHHHHHHHHTTCCCSE-EEEEGGG
T ss_pred EEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEeeCCc------cccchHHHHHHHHHHHHcCCCCCC-CCccccC
Confidence 334557899999999999999999888888788888888741 223456778889999999999986 3699999
Q ss_pred Ccc-hhHHHH-H------Hhhccchhhhhcc----------hhHHH------------HhhhcC------CC--------
Q psy3680 118 VPE-HTQLAW-V------LTCLCTVNRLNHM----------PTYVE------------KCAELK------QS-------- 153 (422)
Q Consensus 118 i~e-~~el~w-~------l~~~~~~~~l~r~----------~~~K~------------k~~~~~------~~-------- 153 (422)
..+ +.+..- + ..|+++-.++..+ +.|.. ++.... .+
T Consensus 77 r~~~y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~ 156 (492)
T 2cfo_A 77 RLDLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEW 156 (492)
T ss_dssp CHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEE
T ss_pred CHHHHHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEE
Confidence 544 333322 2 2377777666432 01111 111000 01
Q ss_pred -------------Cc---------------cchhhHHHhhhhhhccCccEEeecCchhHHHHHHHHHHHHhccccCccCC
Q psy3680 154 -------------PT---------------GLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFP 205 (422)
Q Consensus 154 -------------~~---------------gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~ 205 (422)
.+ |..+|-+==+.|....+.++|.-|.|+..|-..-..+.+.++. +
T Consensus 157 ~D~v~G~~~~~~~~~~~D~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~alg~------~ 230 (492)
T 2cfo_A 157 QDLVRGRVSWQGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALGA------T 230 (492)
T ss_dssp EETTTEEEEEEGGGGCSSEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTTC------C
T ss_pred EecceeeeeecccccCCCeEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHHcCC------C
Confidence 11 3444444444555556677888999999999888888888763 3
Q ss_pred CCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC------CHHHHHHHhhhh
Q psy3680 206 IPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD------PPEVIVRKCKKA 256 (422)
Q Consensus 206 ~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D------sp~~I~kKI~~A 256 (422)
.|.-.+ .++|.+.+ ++|||||.+| . .+.+ .|+.|...+...
T Consensus 231 ~P~~~H----~plil~~~--g~KLSKr~g~--~--~l~~~r~~G~~peal~~~l~~l 277 (492)
T 2cfo_A 231 PPNFAH----TPLILNST--GQKLSKRDGV--T--SISDFRAMGYLAPALANYMTLL 277 (492)
T ss_dssp CCEEEE----ECCEECSS--SSBCCTTSSC--C--BHHHHHHTTCCHHHHHHHHHHT
T ss_pred CceEEE----eeeEECCC--CCEecccCCc--c--cHHHHHHCCCCHHHHHHHHHHh
Confidence 565554 67777764 5899999986 2 2332 588888888874
No 43
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=98.38 E-value=1.3e-06 Score=91.13 Aligned_cols=199 Identities=22% Similarity=0.214 Sum_probs=121.7
Q ss_pred cEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCce-----
Q psy3680 36 QRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKS----- 110 (422)
Q Consensus 36 ~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~----- 110 (422)
.+....=.|||.+||||..+++.+|.-....|-+.++-|.|.. ....+......+..++..+|++++..
T Consensus 14 v~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDtD------~~r~~~~~~~~I~~~l~wlGl~~de~p~~gg 87 (481)
T 2o5r_A 14 VRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTD------LERSEREYEEKLMESLRWLGLLWDEGPDVGG 87 (481)
T ss_dssp CEEEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCSS------CCSGGGHHHHHHHHHHHHHTCCCSBBTTTBC
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCC------ccccHHHHHHHHHHHHHHcCCCCCCCcccCC
Confidence 4678888999999999999999999877666656555555443 22334566777888899999998853
Q ss_pred --EEEEcCCCcc-hhHHHH-H------Hhhccchhhhhcch----------hHH----HH----------hhhc------
Q psy3680 111 --ILFQQSQVPE-HTQLAW-V------LTCLCTVNRLNHMP----------TYV----EK----------CAEL------ 150 (422)
Q Consensus 111 --~i~~qSdi~e-~~el~w-~------l~~~~~~~~l~r~~----------~~K----~k----------~~~~------ 150 (422)
-.|+||+-.+ +.+..- + .-|.++-.++...- .|- +| ....
T Consensus 88 ~~g~y~QS~r~~~y~~~a~~L~~~G~aY~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l~~~e~~~~~~~G~~~~iR 167 (481)
T 2o5r_A 88 DHGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRREYEEKGLRPAVF 167 (481)
T ss_dssp TTCCCBGGGGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHHHHHHHTTCCCEEE
T ss_pred CCCceeeeccHHHHHHHHHHHHHCCCeeEecCCHHHHHHHHHHHHhcCCCCCCCCchhhhcCCHHHHHHHHhcCCcceEE
Confidence 2577998432 222221 1 13555554443210 000 00 0000
Q ss_pred --------------------CCCCc---------cchhhHHHhhhhhhccCccEEeecCchhHHHHHHHHHHHHhccccC
Q psy3680 151 --------------------KQSPT---------GLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFD 201 (422)
Q Consensus 151 --------------------~~~~~---------gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g 201 (422)
+...+ |..+|-+=-+.|=...+.+.|..|.||..|...-.-+.+.++.
T Consensus 168 ~k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~aLG~--- 244 (481)
T 2o5r_A 168 FKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMRSNGLPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYEAFEK--- 244 (481)
T ss_dssp ECCCSSCEEEEETTTEEEEECTTSSCBEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHHHTTC---
T ss_pred EEcCCCceEEEecccceeEeccccCCCeEEEccCCCcchhhHHHHHHHhCCCCeEEEChhHHHhHHHHHHHHHHcCC---
Confidence 00011 2333422222233346899999999999999988888888863
Q ss_pred ccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC------CHHHHHHHhhhh
Q psy3680 202 KIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD------PPEVIVRKCKKA 256 (422)
Q Consensus 202 ~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D------sp~~I~kKI~~A 256 (422)
+.|+..+ .+++.+.+ ++||||+.++ . .|.+ .|+.|...+...
T Consensus 245 ---~~p~~~H----~plil~~~--G~KLSKR~g~---~-~l~~~~~~G~~peal~~~l~~l 292 (481)
T 2o5r_A 245 ---APPVFAH----VSTILGPD--GKKLSKRHGA---T-SVEAFRDMGYLPEALVNYLALL 292 (481)
T ss_dssp ---CCCEEEE----ECCEECTT--SSBCCGGGSC---C-BHHHHHHHTCCHHHHHHHHHTS
T ss_pred ---CCCeEEE----EeeEECCC--CCcccCcCCc---c-cHHHHHHCCCCHHHHHHHHHHh
Confidence 4565544 55566653 4799999986 2 3432 577777777664
No 44
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=98.31 E-value=1.9e-06 Score=89.88 Aligned_cols=200 Identities=20% Similarity=0.258 Sum_probs=122.1
Q ss_pred CCcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q psy3680 34 FPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILF 113 (422)
Q Consensus 34 ~~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~ 113 (422)
.+.++=..=.|||.+||||+..++.+|+..+..|.+.++-|-|. | ......+....+..++..+|++++.. .|
T Consensus 24 ~~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~~~G~filRieDt----D--~~R~~~~~~~~i~~dl~wlGl~~d~~-~~ 96 (490)
T 4g6z_A 24 RPVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDT----D--VERSSQEAVDAILEGMAWLGLDYDEG-PY 96 (490)
T ss_dssp CCCEEEECCCCCSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC----C--GGGCCHHHHHHHHHHHHHTTCCCSEE-EE
T ss_pred CCceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCCC----C--cccccHHHHHHHHHHHHHcCCCCCCC-Cc
Confidence 34555566678899999999999999988887776666655552 2 12234567788899999999999863 68
Q ss_pred EcCCCc-chhHHHH-H------Hhhccchhhhhcch--h--------HHHHhh---------------------hc-CC-
Q psy3680 114 QQSQVP-EHTQLAW-V------LTCLCTVNRLNHMP--T--------YVEKCA---------------------EL-KQ- 152 (422)
Q Consensus 114 ~qSdi~-e~~el~w-~------l~~~~~~~~l~r~~--~--------~K~k~~---------------------~~-~~- 152 (422)
+||+-. .+.+..- + .-|++|-.++..+- + |-...+ .. ++
T Consensus 97 ~qS~r~~~y~~~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~g~~~~~R~k~~~~~~ 176 (490)
T 4g6z_A 97 YQMQRMDRYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEPPAGVAPVLRFRNPLTGT 176 (490)
T ss_dssp EGGGCHHHHHHHHHHHHHTTSEEEECC-------------------CCCCTTCCCTTCCCCCCCTTCCCEEEECCCCSSE
T ss_pred ccccCHHHHHHHHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhhhhcCCCceEEEecCCCCc
Confidence 999843 3333322 2 24788877765321 0 000000 00 00
Q ss_pred -----C-------------------CccchhhHHHhhhhhhccCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCe
Q psy3680 153 -----S-------------------PTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQ 208 (422)
Q Consensus 153 -----~-------------------~~gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~ 208 (422)
. +=|..+|-+==+.|=...+.++|.=|.|...+----.-+.+.++ ++.|+
T Consensus 177 ~~~~D~i~G~~~~~~~~~~D~Vl~R~DG~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~l~~aLG------~~~P~ 250 (490)
T 4g6z_A 177 VAWDDAVKGRVEISNEELDDLVVARPDGTPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILRALG------GEVPV 250 (490)
T ss_dssp EEEEETTTEEEEEEGGGCCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHTT------CCCCE
T ss_pred EEEEEeeeeeeeeccccCCCeEEEeeCCCccchhHHHHHHHhcCCCEEEeccccccChHHHHHHHHHcC------CCCCe
Confidence 0 01333343333334344579999999999888776666777776 34676
Q ss_pred ecccCCCCcccccCCCCCcccccCCCCCCCcEecc------CCHHHHHHHhhhh
Q psy3680 209 LLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEIT------DPPEVIVRKCKKA 256 (422)
Q Consensus 209 ~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~------Dsp~~I~kKI~~A 256 (422)
..+ .++|.+-+ ++||||.++. +.|. -.|+.|.+.+...
T Consensus 251 f~H----lpLi~~~~--g~KLSKR~g~----~sl~~~r~~G~~peal~n~l~~l 294 (490)
T 4g6z_A 251 YAH----LPTVLNEQ--GEKMSKRHGA----MSVMGYRDAGYLPEAVLNYLARL 294 (490)
T ss_dssp EEE----ECCEECTT--SSBCCTTTTC----CBHHHHHHTTCCHHHHHHHHHTS
T ss_pred EEE----ecceeCCC--CCcccCCCCC----cCHHHHHHCCCCHHHHHHHHHHh
Confidence 655 67777753 5899999874 3332 1688888888773
No 45
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=97.90 E-value=0.00028 Score=73.40 Aligned_cols=80 Identities=14% Similarity=0.188 Sum_probs=51.7
Q ss_pred CcEEEEeec--CCCccchhhHHHHHH--HHHHHHH-cCCcEEEEeeCce--eec-------cCCCHHHH-HHHHHHHHHH
Q psy3680 35 PQRIFSGIQ--PTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIVDLH--SIT-------IKQKHKDL-KENIQLMAAS 99 (422)
Q Consensus 35 ~~~i~tGi~--PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIaD~h--Alt-------~~~~~~~i-~~~~~~i~a~ 99 (422)
+..+.+|-- |||.+||||....+. -+.++++ .|+++.+ +.|+. .+- ...++.++ .++...+..+
T Consensus 5 ~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~-~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 83 (497)
T 2csx_A 5 KKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFF-LTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKL 83 (497)
T ss_dssp CEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEE-EEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred CcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceee-ecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 345566655 559999999887665 3445554 6876654 44443 221 12345444 4567788999
Q ss_pred HHHcCCCCCceEEEEcCC
Q psy3680 100 LLACGIDPQKSILFQQSQ 117 (422)
Q Consensus 100 ~lA~Gldp~k~~i~~qSd 117 (422)
+.++|++++ .+++.++
T Consensus 84 ~~~lgi~~d--~~~~t~~ 99 (497)
T 2csx_A 84 WEFLKIEYT--KFIRTTD 99 (497)
T ss_dssp HHHTTCCCS--EEEETTS
T ss_pred HHHhCCcCC--CCccCCC
Confidence 999999988 3566776
No 46
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.88 E-value=6.7e-05 Score=79.15 Aligned_cols=179 Identities=19% Similarity=0.243 Sum_probs=99.3
Q ss_pred cEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q psy3680 36 QRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQQ 115 (422)
Q Consensus 36 ~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~q 115 (422)
.+.=..=.|||.+||||...++.+|......|..+++=|-|.- +.....+....+..++..+|++++ ..++|
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDtD------~~R~~~e~~~~I~edL~wLGl~wd--~~~~q 168 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTD------PRRVDPEAYDMIPADLEWLGVEWD--ETVIQ 168 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCCC------GGGCCTTHHHHHHHHHHHHTCCCS--EEEEG
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCC------cccccHHHHHHHHHHHHHcCCCCC--CCccc
Confidence 3444455677999999999999998877766666666665542 122344567788889999999997 57999
Q ss_pred CCC-cchhHHHH-H------Hhhccchhhhhcch-----------hHHH------HhhhcC----------CC-----C-
Q psy3680 116 SQV-PEHTQLAW-V------LTCLCTVNRLNHMP-----------TYVE------KCAELK----------QS-----P- 154 (422)
Q Consensus 116 Sdi-~e~~el~w-~------l~~~~~~~~l~r~~-----------~~K~------k~~~~~----------~~-----~- 154 (422)
|+. ..+.+..- + ..|.++-.++.... +..+ ++.... .+ +
T Consensus 169 Sdr~~~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR~k~d~~~~n~~~ 248 (553)
T 3aii_A 169 SDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKEGSAVVRVKTDLNHPNPAI 248 (553)
T ss_dssp GGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEEECCCTTCSSGGG
T ss_pred ccCHHHHHHHHHHHHHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCCcCceEEEEEcccccCCCCC
Confidence 994 33433322 2 13666666553110 0100 000000 00 0
Q ss_pred ---------------c-----cchhhHHHhhhhhhccCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCC
Q psy3680 155 ---------------T-----GLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDE 214 (422)
Q Consensus 155 ---------------~-----gl~~YPvLqAaDil~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~ 214 (422)
. |..+|=+=-+.|.-..+.+++..|.|...|-..-.-+...++ ++.|...+
T Consensus 249 ~Dfvl~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG------~~~P~y~H--- 319 (553)
T 3aii_A 249 RDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLG------WEPPEFIH--- 319 (553)
T ss_dssp TTCEEEEECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHHT------CCCCEEEC---
T ss_pred CCcEEEEecCCCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHHHHHHcC------CCCCeEEE---
Confidence 0 222343444556666799999999999987766665566665 23565554
Q ss_pred CCcccccCCCCCcccccCCCC
Q psy3680 215 SAGKVKSLKDPSKKMSKSDLD 235 (422)
Q Consensus 215 ~~~~lp~L~~~~~KMSKS~~n 235 (422)
.++| .++ ++|||||..|
T Consensus 320 -~~~L-~~~--g~KLSKR~~~ 336 (553)
T 3aii_A 320 -YGRL-KMD--DVALSTSGAR 336 (553)
T ss_dssp -CCCB-C---------CHHHH
T ss_pred -eeEE-ecC--Cceechhhhh
Confidence 5666 443 5799999764
No 47
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=97.84 E-value=0.00023 Score=74.03 Aligned_cols=79 Identities=13% Similarity=0.108 Sum_probs=51.0
Q ss_pred cEEEEeecC--CCccchhhHHHHHH--HHHHHHH-cCCcEEEEeeCce--eec-------cCCCHHHH-HHHHHHHHHHH
Q psy3680 36 QRIFSGIQP--TGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIVDLH--SIT-------IKQKHKDL-KENIQLMAASL 100 (422)
Q Consensus 36 ~~i~tGi~P--TG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIaD~h--Alt-------~~~~~~~i-~~~~~~i~a~~ 100 (422)
..+.+|--| ||.+||||..+.+. -+.++++ .|+++.+ +.|+. ..- ...++.++ .++...+..++
T Consensus 4 ~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~-~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 82 (500)
T 2d5b_A 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFF-LTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAW 82 (500)
T ss_dssp EEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEE-EEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceee-ecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 355667666 79999999887665 3445554 6877655 44443 221 02345444 44567888899
Q ss_pred HHcCCCCCceEEEEcCC
Q psy3680 101 LACGIDPQKSILFQQSQ 117 (422)
Q Consensus 101 lA~Gldp~k~~i~~qSd 117 (422)
.+.|++++ .+++.++
T Consensus 83 ~~lgi~~d--~~~~t~~ 97 (500)
T 2d5b_A 83 DLLGIAYD--DFIRTTE 97 (500)
T ss_dssp HHTTCCCS--EEEETTS
T ss_pred HHhCCcCC--CCcccCC
Confidence 99999887 4566776
No 48
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=97.83 E-value=0.0013 Score=68.05 Aligned_cols=72 Identities=17% Similarity=0.201 Sum_probs=46.5
Q ss_pred EEEEeecCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEeeCceeecc---------CCCHHHH-HHHHHHHHHHHHHc
Q psy3680 37 RIFSGIQPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIVDLHSITI---------KQKHKDL-KENIQLMAASLLAC 103 (422)
Q Consensus 37 ~i~tGi~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIaD~hAlt~---------~~~~~~i-~~~~~~i~a~~lA~ 103 (422)
..++|..|.|.+||||....+. -+.++.+ .|++|.+ +-.++..=+ ..++.++ .+++..+..++.++
T Consensus 28 ~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~-v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~L 106 (462)
T 3tqo_A 28 LYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTF-VRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKAL 106 (462)
T ss_dssp EEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEE-EECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEE-ecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 4467999999999999887654 2333333 6876544 444442211 2345544 45567888889999
Q ss_pred CCCCCc
Q psy3680 104 GIDPQK 109 (422)
Q Consensus 104 Gldp~k 109 (422)
|+.++.
T Consensus 107 gI~~d~ 112 (462)
T 3tqo_A 107 RVLSPD 112 (462)
T ss_dssp TCCCCS
T ss_pred CCCCCc
Confidence 998754
No 49
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=97.80 E-value=0.00058 Score=72.19 Aligned_cols=84 Identities=19% Similarity=0.336 Sum_probs=51.3
Q ss_pred cCCCcEEEEeecCC--CccchhhHHHHHH--HHHHHHH-cCCcEEEEee-Cceeec-------cCCCHHHH-HHHHHHHH
Q psy3680 32 ISFPQRIFSGIQPT--GTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIV-DLHSIT-------IKQKHKDL-KENIQLMA 97 (422)
Q Consensus 32 ~~~~~~i~tGi~PT--G~lHLGny~g~i~--~~~~lq~-~g~~~~ilIa-D~hAlt-------~~~~~~~i-~~~~~~i~ 97 (422)
.++...+++|--|+ |.+||||..+.+. -+.++++ .|+++.+..+ |-|..- ...+++++ .+....+.
T Consensus 15 ~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 94 (560)
T 3h99_A 15 QVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQ 94 (560)
T ss_dssp --CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 44444455555455 9999999988765 2444444 6887765544 333321 13455554 45567888
Q ss_pred HHHHHcCCCCCceEEEEcCC
Q psy3680 98 ASLLACGIDPQKSILFQQSQ 117 (422)
Q Consensus 98 a~~lA~Gldp~k~~i~~qSd 117 (422)
.++.++|++++. ++.-++
T Consensus 95 ~~~~~lgi~~d~--~~~t~~ 112 (560)
T 3h99_A 95 TDFAGFNISYDN--YHSTHS 112 (560)
T ss_dssp HHHHHTTCCCSE--EEESSS
T ss_pred HHHHHcCCCCCC--ceeCCC
Confidence 899999999874 444443
No 50
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=97.73 E-value=0.00014 Score=76.55 Aligned_cols=81 Identities=19% Similarity=0.230 Sum_probs=51.3
Q ss_pred CcEEEEeecCC--CccchhhHHHHHH--HHHHHHH-cCCcEEEEee-Cceeec-------cCCCHHHH-HHHHHHHHHHH
Q psy3680 35 PQRIFSGIQPT--GTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIV-DLHSIT-------IKQKHKDL-KENIQLMAASL 100 (422)
Q Consensus 35 ~~~i~tGi~PT--G~lHLGny~g~i~--~~~~lq~-~g~~~~ilIa-D~hAlt-------~~~~~~~i-~~~~~~i~a~~ 100 (422)
+....||--|. |.+||||..+++. -+.++++ .|+++.+..+ |-|..- ...++.++ .+....+..++
T Consensus 25 ~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l 104 (536)
T 4dlp_A 25 EKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMA 104 (536)
T ss_dssp CEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34556666654 9999999888765 3445544 6887765433 334321 12455554 45567788889
Q ss_pred HHcCCCCCceEEEEcCC
Q psy3680 101 LACGIDPQKSILFQQSQ 117 (422)
Q Consensus 101 lA~Gldp~k~~i~~qSd 117 (422)
.++|++++ .+++-++
T Consensus 105 ~~lgi~~d--~~~~t~~ 119 (536)
T 4dlp_A 105 EVLNSSND--DYIRTSE 119 (536)
T ss_dssp HHTTCCCS--EEEETTS
T ss_pred HHcCCCCC--cceeCCC
Confidence 99999987 4455554
No 51
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=97.66 E-value=9.2e-05 Score=78.07 Aligned_cols=96 Identities=15% Similarity=0.049 Sum_probs=66.2
Q ss_pred CcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q psy3680 35 PQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQ 114 (422)
Q Consensus 35 ~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~ 114 (422)
+.+.=.+=.|||.+||||...++.+|......|.++++=|-|.- +.....+....+..++..+|++++. ..++
T Consensus 26 ~v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDTD------~~R~~~e~~~~I~edL~wLGl~wde-~~~~ 98 (553)
T 1qtq_A 26 TVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTN------PVKEDIEYVESIKNDVEWLGFHWSG-NVRY 98 (553)
T ss_dssp SCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCC------GGGCCHHHHHHHHHHHHHTTCCCSS-SCEE
T ss_pred ceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCC------chhcCHHHHHHHHHHHHHcCCCCCC-CCee
Confidence 45555677888999999999999899877776666666666652 1223456677888899999999954 3589
Q ss_pred cCCCc-chhHHHHHH-------hhccchhhh
Q psy3680 115 QSQVP-EHTQLAWVL-------TCLCTVNRL 137 (422)
Q Consensus 115 qSdi~-e~~el~w~l-------~~~~~~~~l 137 (422)
||+.. ++.+..-.| .|.++..++
T Consensus 99 qSer~~~~~~~a~~Li~~G~AY~c~ct~eel 129 (553)
T 1qtq_A 99 SSDYFDQLHAYAIELINKGLAYVDELTPEQI 129 (553)
T ss_dssp GGGGHHHHHHHHHHHHHTTSEEEECCCHHHH
T ss_pred hcccHHHHHHHHHHHHHCCCceecCCCHHHH
Confidence 99853 344443222 366665544
No 52
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=97.63 E-value=0.0013 Score=69.69 Aligned_cols=80 Identities=13% Similarity=0.144 Sum_probs=51.0
Q ss_pred cEEEEeec--CCCccchhhHHHHHH--HHHHHHH-cCCcEEEEee-Cceeec-------cCCCHHHH-HHHHHHHHHHHH
Q psy3680 36 QRIFSGIQ--PTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIV-DLHSIT-------IKQKHKDL-KENIQLMAASLL 101 (422)
Q Consensus 36 ~~i~tGi~--PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIa-D~hAlt-------~~~~~~~i-~~~~~~i~a~~l 101 (422)
..+.|+-- |||.+||||..+.+. -+.++++ .|++|.+..+ |-|..- ...+|+++ .+....+..+|.
T Consensus 27 ~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~~~~ 106 (564)
T 3kfl_A 27 VFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQ 106 (564)
T ss_dssp CEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34445544 779999999988665 3555555 6888765444 344321 12355554 455678888899
Q ss_pred HcCCCCCceEEEEcCC
Q psy3680 102 ACGIDPQKSILFQQSQ 117 (422)
Q Consensus 102 A~Gldp~k~~i~~qSd 117 (422)
++|++.+. +++-++
T Consensus 107 ~lgi~~D~--~~~t~~ 120 (564)
T 3kfl_A 107 EMNYDMNY--FIRTTN 120 (564)
T ss_dssp HTTCCCSE--EEETTS
T ss_pred HcCCCCCc--cccCCC
Confidence 99999873 455554
No 53
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=97.58 E-value=9.2e-05 Score=77.76 Aligned_cols=199 Identities=21% Similarity=0.232 Sum_probs=119.7
Q ss_pred cEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCce-----
Q psy3680 36 QRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKS----- 110 (422)
Q Consensus 36 ~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~----- 110 (422)
+|+=.-=.|||.|||||...|+.+|......|-++++=|-|.- + .....+....|..++..+|++++..
T Consensus 25 vrtRFAPsPtG~LHiG~artAl~n~~~Ar~~~G~fiLRieDtD----~--~R~~~~~~~~I~~~L~wlGl~wDe~p~~~g 98 (512)
T 4gri_A 25 TRVRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDTD----Q--SRYSPEAENDLYSSLKWLGISFDEGPVVGG 98 (512)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEECBCCCC----T--TSCCHHHHHHHHHHHHHHTCCCSBBTTTBC
T ss_pred eeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCC----C--CcCCHHHHHHHHHHHHHcCCCCCcCCccCC
Confidence 3444455678999999999999999887777766655565543 1 1112345566777788889998753
Q ss_pred --EEEEcCCCcchh-HHH-HH------HhhccchhhhhcchhH----------------------HHHhhhc--------
Q psy3680 111 --ILFQQSQVPEHT-QLA-WV------LTCLCTVNRLNHMPTY----------------------VEKCAEL-------- 150 (422)
Q Consensus 111 --~i~~qSdi~e~~-el~-w~------l~~~~~~~~l~r~~~~----------------------K~k~~~~-------- 150 (422)
-.|+||+-.+.. +.. .+ .-|.+|-.++.+.-.- +.+....
T Consensus 99 ~~~py~QS~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~R~k 178 (512)
T 4gri_A 99 DYAPYVQSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVENALIKKIKPVVRFK 178 (512)
T ss_dssp TTCCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHHHHHHTTCCCEEEEC
T ss_pred CCCCccccchHHHHHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhhhhhhhhhhccceeeec
Confidence 247899854432 222 12 2488887666532110 1110000
Q ss_pred ---C------CCCccc--------------------hhhHHHhhhhhhccCccEEeecCchhHHHHHHHHHHHHhccccC
Q psy3680 151 ---K------QSPTGL--------------------FLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFD 201 (422)
Q Consensus 151 ---~------~~~~gl--------------------~~YPvLqAaDil~~~a~~vpvG~DQ~~hielaRdia~r~n~~~g 201 (422)
+ ..-.|. .+|-+==+.|=...+.++|.-|.|...+-..-.-|.+.++
T Consensus 179 ~~~~~~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l~sTp~q~~l~~alg---- 254 (512)
T 4gri_A 179 IPLEGDTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVLLYKAFK---- 254 (512)
T ss_dssp CCSSCEEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHT----
T ss_pred ccccCCceeeccccceEEecccccCCceEEEecCCcccccccceecccccCCceeccccccccccHHHHHHHHHcC----
Confidence 0 001111 1222222222223589999999999998887777777777
Q ss_pred ccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC------CHHHHHHHhhhh
Q psy3680 202 KIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD------PPEVIVRKCKKA 256 (422)
Q Consensus 202 ~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D------sp~~I~kKI~~A 256 (422)
++.|+..+ .++|.+-+ ++|+||.++. ..+.+ .|+.+...+...
T Consensus 255 --~~~P~y~H----~pli~~~~--g~kLSKR~~~----~~v~~~~~~G~lPeAl~NyLalL 303 (512)
T 4gri_A 255 --WKPPIYCH----LPMVMGND--GQKLSKRHGS----TALRQFIEDGYLPEAIINYVTLL 303 (512)
T ss_dssp --CCCCEEEE----ECCCBCTT--SSBCCTTTSC----CBHHHHHHHTCCHHHHHHHHHHS
T ss_pred --CCCCeEEe----cchhcccc--ccccCccccc----ccHHHHHHcCCChHHHHHHHHHh
Confidence 45676666 67777753 5899999874 33332 466676666553
No 54
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=97.58 E-value=0.00015 Score=76.30 Aligned_cols=79 Identities=20% Similarity=0.263 Sum_probs=49.7
Q ss_pred cEEEEeecCCCccchhhHHHHHHHHH--HHH-HcCCcEEEEe-eCceee-c-cC------------CC-----------H
Q psy3680 36 QRIFSGIQPTGTLHLGNYFGAVQTWS--ALQ-NKGEDVIFCI-VDLHSI-T-IK------------QK-----------H 86 (422)
Q Consensus 36 ~~i~tGi~PTG~lHLGny~g~i~~~~--~lq-~~g~~~~ilI-aD~hAl-t-~~------------~~-----------~ 86 (422)
..+-+|..|||.+||||...++..++ ++. ..|+++.++. .|.|.- . .| .+ .
T Consensus 22 yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~~ 101 (523)
T 1irx_A 22 YVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHE 101 (523)
T ss_dssp EEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSSS
T ss_pred EEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhHH
Confidence 34446999999999999998887532 222 3565554333 444431 1 10 01 1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCceEEEEcCC
Q psy3680 87 KDLKENIQLMAASLLACGIDPQKSILFQQSQ 117 (422)
Q Consensus 87 ~~i~~~~~~i~a~~lA~Gldp~k~~i~~qSd 117 (422)
+-..++...+..++..+|++++ +|+||+
T Consensus 102 ~~~~~~~~~~~~~l~~Lgi~~D---~~~~se 129 (523)
T 1irx_A 102 SYAEHFMRKFEEEVEKLGIEVD---LLYASE 129 (523)
T ss_dssp SHHHHHHHHHHHHHHTTTCCCE---EEEHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCce---EEechh
Confidence 1224577788889999999886 358987
No 55
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=97.51 E-value=0.0069 Score=62.66 Aligned_cols=80 Identities=15% Similarity=0.107 Sum_probs=47.8
Q ss_pred EEEEeecCCCccchhhHHHHHH--HHHHHHH-cCCcEEEE--eeCceeec------cCCCHHHH-HHHHHHHHHHHHHcC
Q psy3680 37 RIFSGIQPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFC--IVDLHSIT------IKQKHKDL-KENIQLMAASLLACG 104 (422)
Q Consensus 37 ~i~tGi~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~il--IaD~hAlt------~~~~~~~i-~~~~~~i~a~~lA~G 104 (422)
..+||-.|.|.+||||..+++. -+.++.+ .|+++.+. +.|+-.-+ ...++.++ .+....+..++.++|
T Consensus 25 ~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~~~Lg 104 (461)
T 1li5_A 25 MYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALN 104 (461)
T ss_dssp EEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 4456766679999999887665 2333333 58776554 23332111 12355555 345677888899999
Q ss_pred CCCCceEEEEcCC
Q psy3680 105 IDPQKSILFQQSQ 117 (422)
Q Consensus 105 ldp~k~~i~~qSd 117 (422)
+.+.. .+.+.|+
T Consensus 105 I~~~d-~~~r~t~ 116 (461)
T 1li5_A 105 ILRPD-MEPRATH 116 (461)
T ss_dssp CCCCS-BCCBGGG
T ss_pred CCCCc-ccccccc
Confidence 98532 2345554
No 56
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=97.37 E-value=0.0019 Score=65.89 Aligned_cols=79 Identities=19% Similarity=0.170 Sum_probs=50.2
Q ss_pred EEEEeecCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEe-eCceee--cc-----CCCHHHH-HHHHHHHHHHHHHcC
Q psy3680 37 RIFSGIQPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCI-VDLHSI--TI-----KQKHKDL-KENIQLMAASLLACG 104 (422)
Q Consensus 37 ~i~tGi~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilI-aD~hAl--t~-----~~~~~~i-~~~~~~i~a~~lA~G 104 (422)
..++|..|.|.+||||..+.+. -+.++++ .|+++.+.. .|-|.. .. ..++.++ .++...+..++.++|
T Consensus 42 ~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~Lg 121 (414)
T 3c8z_A 42 MYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALR 121 (414)
T ss_dssp EEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 4467888889999999887665 3444444 688775543 344431 11 2355444 455678888999999
Q ss_pred CC-CCceEEEEcCC
Q psy3680 105 ID-PQKSILFQQSQ 117 (422)
Q Consensus 105 ld-p~k~~i~~qSd 117 (422)
+. ++ .+++.|+
T Consensus 122 i~~~d--~~~r~t~ 133 (414)
T 3c8z_A 122 VLPPH--DYVAATD 133 (414)
T ss_dssp CCCCS--EEEEGGG
T ss_pred CCCCc--ceecccc
Confidence 98 65 3455555
No 57
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=97.33 E-value=0.00072 Score=74.48 Aligned_cols=95 Identities=17% Similarity=0.174 Sum_probs=65.8
Q ss_pred cEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeeccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q psy3680 36 QRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQQ 115 (422)
Q Consensus 36 ~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt~~~~~~~i~~~~~~i~a~~lA~Gldp~k~~i~~q 115 (422)
.++=.+=.|||.+||||...++.+|......|.++++=|-|.- +.....+....+..++..+|++++. .+++|
T Consensus 67 v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDTD------~~R~~~e~~~~IledL~wLGl~wde-~~~~q 139 (851)
T 2hz7_A 67 VVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTN------PELARQEYVDSIADDLKWLGLDWGE-HFYYA 139 (851)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCC------TTTCCHHHHHHHHHHHHHHTCCCTT-CEEEG
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCC------cccccHHHHHHHHHHHHHcCCCCCC-CcccH
Confidence 4444588889999999999999899877776667666666652 2233456777888899999999954 36999
Q ss_pred CCC-cchhHHHH-H------Hhhccchhhh
Q psy3680 116 SQV-PEHTQLAW-V------LTCLCTVNRL 137 (422)
Q Consensus 116 Sdi-~e~~el~w-~------l~~~~~~~~l 137 (422)
|+. ..+.+..- + ..|+++-.++
T Consensus 140 Ser~d~y~e~a~~LI~~G~AY~c~ct~eel 169 (851)
T 2hz7_A 140 SDYFDRYYAYAEQLIRQGDAYVESVSPEEL 169 (851)
T ss_dssp GGGHHHHHHHHHHHHHTTSEEEECSCHHHH
T ss_pred hhhHHHHHHHHHHHHHCCCcEeecCCHHHH
Confidence 995 33444322 2 1366666544
No 58
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=97.15 E-value=0.0035 Score=65.51 Aligned_cols=76 Identities=11% Similarity=0.038 Sum_probs=47.5
Q ss_pred CcEE-EEeecCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEe--e---------Ccee--ecc-----CCCHHHH-HH
Q psy3680 35 PQRI-FSGIQPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCI--V---------DLHS--ITI-----KQKHKDL-KE 91 (422)
Q Consensus 35 ~~~i-~tGi~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilI--a---------D~hA--lt~-----~~~~~~i-~~ 91 (422)
.+++ .+|..|.|.+||||..+.+. -+.++++ .|++|.+.. . |-|. ++. ..++.++ .+
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~ 121 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEF 121 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHHH
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHH
Confidence 3444 56888889999999877554 2333333 588888773 2 3332 221 2356555 56
Q ss_pred HHHHHHHHHHHcCCCCCce
Q psy3680 92 NIQLMAASLLACGIDPQKS 110 (422)
Q Consensus 92 ~~~~i~a~~lA~Gldp~k~ 110 (422)
++..+..++.++|+.++..
T Consensus 122 ~~~~f~~d~~~Lgi~~d~~ 140 (501)
T 3sp1_A 122 FTEAFFNDCRKLNIVYPDK 140 (501)
T ss_dssp HHHHHHHHHHHTTCCCCSE
T ss_pred HHHHHHHHHHHcCCCCCCc
Confidence 6788899999999987753
No 59
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=97.12 E-value=0.00037 Score=74.43 Aligned_cols=61 Identities=15% Similarity=0.036 Sum_probs=35.3
Q ss_pred CccEE--eecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC
Q psy3680 172 KATHI--PAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD 244 (422)
Q Consensus 172 ~a~~v--pvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D 244 (422)
+.+.+ .+|.||..|+.....+++.++..+. .+...+ ..+.+|.. . ++|||||.+| .|.+.|
T Consensus 345 ~~~~~iyV~g~~h~~~~~~~~~~~~alG~~~~----~~~~~H--~~~g~v~~-~--g~KMSKr~Gn---~v~l~d 407 (592)
T 1iq0_A 345 KAEETINVVDVRQSHPQALVRAALALAGYPAL----AEKAHH--LAYETVLL-E--GRQMSGRKGL---AVSVDE 407 (592)
T ss_dssp CCSEEEEEEESSSCCCHHHHHHHHHHTTCHHH----HTTEEE--EEECCEEE-T--TBCSCC-------CCBHHH
T ss_pred CCCEEEEEEeccHHHHHHHHHHHHHHcCCCCC----CCcEEE--EEeeEEEc-C--CCcccCCCCC---ccCHHH
Confidence 44444 6899999999998888888774210 012222 12344432 2 4799999987 887754
No 60
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=96.48 E-value=0.0021 Score=69.10 Aligned_cols=60 Identities=15% Similarity=0.019 Sum_probs=39.0
Q ss_pred CccEEeecCchhHHHHHHHHHHHHhccccCccCCCC-eecccCCCCcccccCCCCCcccccCCC--CCCCcEeccC
Q psy3680 172 KATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIP-QLLPQDESAGKVKSLKDPSKKMSKSDL--DSNSKIEITD 244 (422)
Q Consensus 172 ~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P-~~li~~~~~~~lp~L~~~~~KMSKS~~--n~~s~I~L~D 244 (422)
+-.+-.+|.||..|+.....+++.++.... + ...+ ..+.+|. +. ++|||||.+ | .|.+.|
T Consensus 377 d~~IyV~g~~q~~~~~~l~~~l~~lG~~~~-----~~~~~h--~~~g~V~-~~--~~KMSkr~G~~n---~v~l~d 439 (629)
T 2zue_A 377 NIVINVIGAEQKHPQLAIKYALQLLGFEDA-----AANLYH--LAYEHVE-RP--EGKFSGRKGTWV---GFTVDE 439 (629)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHHTTCHHH-----HHTEEE--EEECCEE-BT--TBCCCTTTTTTT---TCBHHH
T ss_pred CcEEEEEeCcHhhHHHHHHHHHHHcCCCCC-----CCeEEE--EEeeeEE-cC--CCcccCCCCCCC---eeeHHH
Confidence 344667899999999988888888774210 1 1112 1234443 22 479999998 8 888754
No 61
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=95.38 E-value=0.027 Score=60.17 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=28.9
Q ss_pred EEeecCCCccchhhHHHHHH--HHHHHHH-cCCcEEE--EeeC
Q psy3680 39 FSGIQPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIF--CIVD 76 (422)
Q Consensus 39 ~tGi~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~i--lIaD 76 (422)
|+|-.|+|.+|+||..+++. -+.++.+ .|++|+. -|.|
T Consensus 149 ~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D 191 (607)
T 1f7u_A 149 FSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGD 191 (607)
T ss_dssp CCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBC
T ss_pred ecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecC
Confidence 78999999999999988775 3444544 6887755 4677
No 62
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=93.42 E-value=0.22 Score=51.89 Aligned_cols=78 Identities=12% Similarity=0.048 Sum_probs=51.8
Q ss_pred cCCCcEEEEe-ecCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEeeCc-eee--c-----cCCCHHHH-HHHHHHHHH
Q psy3680 32 ISFPQRIFSG-IQPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIVDL-HSI--T-----IKQKHKDL-KENIQLMAA 98 (422)
Q Consensus 32 ~~~~~~i~tG-i~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIaD~-hAl--t-----~~~~~~~i-~~~~~~i~a 98 (422)
..++..|-|. --++|.|||||..+.+. -+.+.++ .|.++.+.-+.. |++ . ...++.++ .++...+..
T Consensus 7 ~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~ 86 (542)
T 3u1f_A 7 VEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKK 86 (542)
T ss_dssp CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3445556665 36889999999988654 3445555 688876654443 332 2 13466555 566778889
Q ss_pred HHHHcCCCCCc
Q psy3680 99 SLLACGIDPQK 109 (422)
Q Consensus 99 ~~lA~Gldp~k 109 (422)
++.++|++.+.
T Consensus 87 ~~~~lgi~~D~ 97 (542)
T 3u1f_A 87 CFEQMDYSIDY 97 (542)
T ss_dssp HHHHHTCCCSE
T ss_pred HHHHhCCccCc
Confidence 99999998874
No 63
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=92.35 E-value=0.37 Score=52.42 Aligned_cols=87 Identities=21% Similarity=0.295 Sum_probs=56.7
Q ss_pred CcEEEEee-cCCCccchhhHHH-HHH--HHHHHHH-cCCcEEEEee-Cceeec-------cCCCHHHH-HHHHHHHHHHH
Q psy3680 35 PQRIFSGI-QPTGTLHLGNYFG-AVQ--TWSALQN-KGEDVIFCIV-DLHSIT-------IKQKHKDL-KENIQLMAASL 100 (422)
Q Consensus 35 ~~~i~tGi-~PTG~lHLGny~g-~i~--~~~~lq~-~g~~~~ilIa-D~hAlt-------~~~~~~~i-~~~~~~i~a~~ 100 (422)
+..|.+++ -|+|.+||||..+ .+. -+.++++ .|+++.+..+ |-|.+- ...+|.++ .++...+..+|
T Consensus 3 ~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~ 82 (722)
T 1rqg_A 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITF 82 (722)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34566666 7789999999997 343 4666776 6887766555 333331 13466655 45667888999
Q ss_pred HHcCCCCCceEEEEcCCCcchhHH
Q psy3680 101 LACGIDPQKSILFQQSQVPEHTQL 124 (422)
Q Consensus 101 lA~Gldp~k~~i~~qSdi~e~~el 124 (422)
.++|++.+. +++-++ ++|.+.
T Consensus 83 ~~lgis~D~--~~rT~d-~~~~~~ 103 (722)
T 1rqg_A 83 QRAKISFDF--FGRTEL-PIHYKL 103 (722)
T ss_dssp HHHTCCCSE--EEETTS-HHHHHH
T ss_pred HHhCCCCCC--CeeCCC-HHHHHH
Confidence 999998874 444443 445443
No 64
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=91.84 E-value=0.18 Score=55.68 Aligned_cols=73 Identities=19% Similarity=0.175 Sum_probs=44.5
Q ss_pred cCccEEeecCchhH-HHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC-----
Q psy3680 171 YKATHIPAGLDQIH-NINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD----- 244 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~-hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D----- 244 (422)
+-+|+..+|.||.. |+.....+...+. |. ..+..++ .+..+... + |+|||||.+| .|.+.|
T Consensus 543 ~P~dl~~~G~D~~r~w~~~~~~~~~~~~---~~--~pf~~v~---~hg~vl~~-~-G~KMSKS~GN---vV~p~dli~~y 609 (821)
T 1ile_A 543 FPADFIAEGIDQTRGWFNSLHQLGVMLF---GS--IAFKNVI---CHGLILDE-K-GQKMSKSKGN---VVDPWDIIRKF 609 (821)
T ss_dssp SSBSBEEEEGGGGGTHHHHHHHHHHHHH---SS--CSBSEEE---EECCEECT-T-SSCCCTTTTC---CCCHHHHHTTT
T ss_pred CCcccccchhhhhccHHHHHHHHHHHhc---CC--CCcceEE---EEeeEECC-C-CCCCCccCCC---CCCHHHHHHHh
Confidence 45899999999973 4433332222221 21 1223444 35555554 3 5899999987 887765
Q ss_pred CHHHHHHHhhhh
Q psy3680 245 PPEVIVRKCKKA 256 (422)
Q Consensus 245 sp~~I~kKI~~A 256 (422)
+++.++=.+...
T Consensus 610 GaDalR~~ll~~ 621 (821)
T 1ile_A 610 GADALRWYIYVS 621 (821)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHhC
Confidence 677777777764
No 65
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=90.89 E-value=0.23 Score=54.61 Aligned_cols=72 Identities=19% Similarity=0.176 Sum_probs=44.9
Q ss_pred cCccEEeecCchhH-HHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC-----
Q psy3680 171 YKATHIPAGLDQIH-NINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD----- 244 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~-hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D----- 244 (422)
+.+|+..+|.||.. |+...+-...-+ ++. .+.|..++ .+.+|.. + |+|||||.+| .|.+.|
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~~~~~~~~---~~~-~~~pk~v~---~~G~v~~--~-G~KMSKS~GN---vv~p~dli~~y 668 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAI---FRE-EHWPKGIA---VNGFGTL--E-GQKMSKSKGN---VLNFIDAIEEN 668 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHH---SCG-GGSCCEEE---EECCEEE--T-TBCCCTTTTC---CCBHHHHHHHH
T ss_pred CCceEEeecccccccHHHHHHHHHHHH---cCc-cccccEEE---EEeEEEe--C-CeehhhcCCC---cCCHHHHHHHc
Confidence 56899999999975 666543222221 121 12344444 2444443 3 5899999987 888765
Q ss_pred CHHHHHHHhhh
Q psy3680 245 PPEVIVRKCKK 255 (422)
Q Consensus 245 sp~~I~kKI~~ 255 (422)
.++.++=.+..
T Consensus 669 GaDalR~~ll~ 679 (810)
T 1wkb_A 669 GADVVRLYIMS 679 (810)
T ss_dssp CHHHHHHHHHH
T ss_pred ChHHHHHHHHh
Confidence 57777776654
No 66
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=90.82 E-value=0.16 Score=52.87 Aligned_cols=73 Identities=18% Similarity=0.279 Sum_probs=46.8
Q ss_pred cCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEee-Cceeec-------cCCCHHHH-HHHHHHHHHHHHHcCCCCCce
Q psy3680 43 QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIV-DLHSIT-------IKQKHKDL-KENIQLMAASLLACGIDPQKS 110 (422)
Q Consensus 43 ~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIa-D~hAlt-------~~~~~~~i-~~~~~~i~a~~lA~Gldp~k~ 110 (422)
-|||.+||||....+. -+.++++ .|+++.++.+ |-|.+- ...++.++ +++...+..++.++|++++
T Consensus 22 ~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~d-- 99 (524)
T 2x1l_A 22 YPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKLNISFD-- 99 (524)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCS--
T ss_pred CCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCC--
Confidence 4579999999887655 3455555 6877665433 222221 12345554 4566788889999999887
Q ss_pred EEEEcCC
Q psy3680 111 ILFQQSQ 117 (422)
Q Consensus 111 ~i~~qSd 117 (422)
.+++.++
T Consensus 100 ~~~~t~~ 106 (524)
T 2x1l_A 100 RFIRTSD 106 (524)
T ss_dssp EEEETTS
T ss_pred CCeecCC
Confidence 4566666
No 67
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=90.80 E-value=0.25 Score=55.52 Aligned_cols=73 Identities=19% Similarity=0.168 Sum_probs=45.5
Q ss_pred cCccEEeecCchhH-HHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC-----
Q psy3680 171 YKATHIPAGLDQIH-NINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD----- 244 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~-hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D----- 244 (422)
+-+|+..+|.||.. |+...+-...-+ ++. -+.|..++ .+.+|.. + |+|||||.+| .|.+.|
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a~---~~~-~~~pk~v~---~~G~v~~--~-G~KMSKS~GN---vv~p~d~i~~y 668 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAI---FRE-EHWPKGIA---VNGFGTL--E-GQKMSKSKGN---VLNFIDAIEEN 668 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHH---SCS-TTSCCCEE---EECCEEE--S-SSCCCTTTCC---CCBHHHHHHTT
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHHH---cCc-ccccceEE---EeeEEee--C-CEEccccccC---CCCHHHHHHHh
Confidence 57899999999965 655543222221 221 12344554 2445543 3 5899999987 888765
Q ss_pred CHHHHHHHhhhh
Q psy3680 245 PPEVIVRKCKKA 256 (422)
Q Consensus 245 sp~~I~kKI~~A 256 (422)
.++.++=.+..+
T Consensus 669 GaDalR~~ll~~ 680 (967)
T 1wz2_A 669 GADVVRLYIMSL 680 (967)
T ss_dssp CHHHHHHHHHHH
T ss_pred ChHHHHHHHHhC
Confidence 677777777653
No 68
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=90.49 E-value=0.3 Score=54.56 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=45.0
Q ss_pred CCCcEEEEee-cCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEee-Cceeec-------cCC-----CHHHH------
Q psy3680 33 SFPQRIFSGI-QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIV-DLHSIT-------IKQ-----KHKDL------ 89 (422)
Q Consensus 33 ~~~~~i~tGi-~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIa-D~hAlt-------~~~-----~~~~i------ 89 (422)
+++..+.+|. -|||.|||||.+..+. -++++++ .|+++.+..| |-|++- ... .+++.
T Consensus 47 ~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~ 126 (917)
T 1ffy_A 47 NETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKE 126 (917)
T ss_dssp SCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHH
T ss_pred CCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHH
Confidence 3456666776 6789999999887554 4666666 5776644433 555552 011 23333
Q ss_pred --HHHHHHHHHHHHHcCCC
Q psy3680 90 --KENIQLMAASLLACGID 106 (422)
Q Consensus 90 --~~~~~~i~a~~lA~Gld 106 (422)
.++...+..++...|+.
T Consensus 127 ~~~~~~~~~~~~~~rlG~~ 145 (917)
T 1ffy_A 127 FALEQIELQKKDFRRLGVR 145 (917)
T ss_dssp HHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHhCeE
Confidence 33445667777778873
No 69
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=90.12 E-value=0.16 Score=53.05 Aligned_cols=68 Identities=21% Similarity=0.150 Sum_probs=41.9
Q ss_pred CccEEeecCchhHHHH---HHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC----
Q psy3680 172 KATHIPAGLDQIHNIN---LANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD---- 244 (422)
Q Consensus 172 ~a~~vpvG~DQ~~hie---laRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D---- 244 (422)
-+|+..+|.||..++. .++-++. + .+.|..++ .+..+- . + |+|||||.+| .|...|
T Consensus 278 p~d~~~~G~D~~~fh~~~~~a~l~~~--g------~~~~~~v~---~hg~l~-~-~-G~KMSKSlGN---vi~p~~~i~~ 340 (542)
T 3u1f_A 278 PADVHVIGKDILKFHAIYWPAFLLSA--G------LPLPKKIV---AHGWWT-K-D-RKKISKSLGN---VFDPVEKAEE 340 (542)
T ss_dssp SCSEEEEEGGGHHHHHTHHHHHHHHH--T------CCCCSCEE---EECCCE-E-T-TBCCBTTTTB---CCCHHHHHHH
T ss_pred cceEEEecccccccccchhHHHHHhh--c------ccccceec---ccccee-c-C-CceeccccCC---CCChhHHHhh
Confidence 4689999999977543 2222221 2 23455554 234432 2 3 6999999987 887665
Q ss_pred -CHHHHHHHhhhh
Q psy3680 245 -PPEVIVRKCKKA 256 (422)
Q Consensus 245 -sp~~I~kKI~~A 256 (422)
+++.++=.+.+.
T Consensus 341 ygaD~lR~~l~~~ 353 (542)
T 3u1f_A 341 FGYDALKYFLLRE 353 (542)
T ss_dssp HCHHHHHHHHHHH
T ss_pred cCchHHHHHHHhc
Confidence 567777666653
No 70
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=89.24 E-value=0.61 Score=51.91 Aligned_cols=74 Identities=22% Similarity=0.245 Sum_probs=48.7
Q ss_pred CcEEEEee-cCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEee-Cceeec-------cCCCHHHH-HHHHHHHHHHHH
Q psy3680 35 PQRIFSGI-QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIV-DLHSIT-------IKQKHKDL-KENIQLMAASLL 101 (422)
Q Consensus 35 ~~~i~tGi-~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIa-D~hAlt-------~~~~~~~i-~~~~~~i~a~~l 101 (422)
+..+++++ -|||.|||||..+.+. -+.++++ .|+++.+..+ |-|.+- ...++.+. .+++..+..++.
T Consensus 54 ~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~ 133 (880)
T 4arc_A 54 KYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLK 133 (880)
T ss_dssp EEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34566665 7789999999887654 3556665 5877655443 344431 12345443 456778899999
Q ss_pred HcCCCCC
Q psy3680 102 ACGIDPQ 108 (422)
Q Consensus 102 A~Gldp~ 108 (422)
++|+..+
T Consensus 134 ~LGis~D 140 (880)
T 4arc_A 134 MLGFGYD 140 (880)
T ss_dssp HTTCCCC
T ss_pred HhCCCcC
Confidence 9998877
No 71
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=88.37 E-value=0.11 Score=53.74 Aligned_cols=62 Identities=19% Similarity=0.012 Sum_probs=35.4
Q ss_pred CccE--EeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccc-cCCCCCcccccCCCCCCCcEeccC
Q psy3680 172 KATH--IPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVK-SLKDPSKKMSKSDLDSNSKIEITD 244 (422)
Q Consensus 172 ~a~~--vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp-~L~~~~~KMSKS~~n~~s~I~L~D 244 (422)
+.|. -.+|.||..|+..-..+++.++.. .|...+ ..+.++. +-+|.+.|||||.+| .|.+.|
T Consensus 234 ~~d~~Iyv~G~dq~~~f~~l~~~l~~lG~~------~~~~~h--~~~g~V~l~~dG~~~KMSKr~Gn---~v~l~d 298 (464)
T 3fnr_A 234 GYGKCINIWGADHHGYIPRMKAAMEFLGFD------SNNLEI--ILAQMVSLLKDGEPYKMSKRAGN---FILMSD 298 (464)
T ss_dssp SCSEEEEEEEGGGGGGHHHHHHHHHTTTCC------GGGEEE--EEECCEEEEETTEECCC---CCS---SCBHHH
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHHHcCCC------ccceEE--EEeeeEEecCCCcccCCcCcCCC---CCCHHH
Confidence 3554 479999999999887888777632 222111 0233431 112212599999987 888865
No 72
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=87.57 E-value=2 Score=44.47 Aligned_cols=70 Identities=17% Similarity=0.097 Sum_probs=42.6
Q ss_pred cCccEEeecCchhHHHH-HHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC-----
Q psy3680 171 YKATHIPAGLDQIHNIN-LANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD----- 244 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~hie-laRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D----- 244 (422)
+.+|+..+|.||...+. +-.-++...+. +.|..++ .+.+|.. + |+|||||.+| .|.+.|
T Consensus 264 ~p~di~~~G~D~~~fh~~~~~a~l~~~g~------~~~~~v~---~hG~v~~--~-G~KMSKS~GN---~v~p~d~i~~~ 328 (524)
T 2x1l_A 264 WPADLHMIGKDIIRFHTVYWPAFLMSAGL------PLPKRIF---AHGWLLN--R-GEKMSKSIGN---VVDPVNLVDTF 328 (524)
T ss_dssp CSCSEEEEEGGGHHHHHTHHHHHHHHHTC------CCCSCEE---EECCEEE--C-SCSEETTTEE---SSCHHHHHHHH
T ss_pred CCCeEEEEeechhHhHHHHHHHHHHHCCC------CCCcEEE---ECcEEEe--C-CcccCCcCCC---CCCHHHHHHHc
Confidence 46899999999985322 21112222332 2344444 2444443 3 5899999987 888765
Q ss_pred CHHHHHHHhhh
Q psy3680 245 PPEVIVRKCKK 255 (422)
Q Consensus 245 sp~~I~kKI~~ 255 (422)
.++.++=.+.+
T Consensus 329 g~DalR~~ll~ 339 (524)
T 2x1l_A 329 GLDQVRYFLLR 339 (524)
T ss_dssp CHHHHHHHHHH
T ss_pred ChHHHHHHHHh
Confidence 56777766666
No 73
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=86.69 E-value=0.44 Score=52.89 Aligned_cols=73 Identities=18% Similarity=0.180 Sum_probs=46.5
Q ss_pred cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCC-eecccCCCCcccccCCCCCcccccCCCCCCCcEeccC-----
Q psy3680 171 YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIP-QLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD----- 244 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P-~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D----- 244 (422)
|-+|+...|.||.. .=.+|-++.... ..|. .| ..++ .+.++.+.+ |+|||||.+| .|...|
T Consensus 480 ~P~d~~v~G~Dii~-~W~a~~~~~~~~-~~g~---~Pfk~v~---~hG~vld~~--G~KMSKSlGN---vIdP~dli~~y 546 (862)
T 1gax_A 480 YPGDVLVTGYDILF-LWVSRMEVSGYH-FMGE---RPFKTVL---LHGLVLDEK--GQKMSKSKGN---VIDPLEMVERY 546 (862)
T ss_dssp CSBSCEEEEGGGTT-TTHHHHHHHHHH-HSSS---CSBSEEE---EECCEECTT--SCBCCTTTTC---CCCHHHHHHHH
T ss_pred CCceEEecCccccc-cHHHHHHHHHHH-hcCC---CcccEEE---EeeeEEcCC--CCCccccCCC---CCCHHHHHHHc
Confidence 56899999999975 334555555431 1232 24 3343 366666543 5899999987 887765
Q ss_pred CHHHHHHHhhhh
Q psy3680 245 PPEVIVRKCKKA 256 (422)
Q Consensus 245 sp~~I~kKI~~A 256 (422)
.++.++=.+...
T Consensus 547 GaDalR~~ll~~ 558 (862)
T 1gax_A 547 GADALRFALIYL 558 (862)
T ss_dssp CHHHHHHHHHHH
T ss_pred ChHHHHHHHHhc
Confidence 567777666663
No 74
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=83.91 E-value=1.4 Score=48.94 Aligned_cols=77 Identities=18% Similarity=0.147 Sum_probs=48.9
Q ss_pred cCccEEeecCch-hHHHHHHHHHHHHhccccC-ccCCCC-eecccCCCCcccc-------cCCCCCc-------------
Q psy3680 171 YKATHIPAGLDQ-IHNINLANHLTQLFNNKFD-KIFPIP-QLLPQDESAGKVK-------SLKDPSK------------- 227 (422)
Q Consensus 171 ~~a~~vpvG~DQ-~~hielaRdia~r~n~~~g-~~f~~P-~~li~~~~~~~lp-------~L~~~~~------------- 227 (422)
+-+|+-.+|.|| .-|+-.+|-....+.. .| -....| ..++ .+.+|. .- + |+
T Consensus 542 ~PvD~yigG~EHailHllyaRf~~~~L~~-~g~~~~~ePFk~ll---~qGmVl~~~~~~~d~-~-G~~~~~~~~~v~~~~ 615 (880)
T 4arc_A 542 LPVDIYIGGIEHAIMHLLYFRFFHKLMRD-AGMVNSDEPAKQLL---CQGMVLADAFYYVGE-N-GERNWVSPVDAIVER 615 (880)
T ss_dssp CSEEEEECCGGGTTTHHHHHHHHHHHHHH-TTSCCCSCSEEEEE---CCCCEEEEEEEEECT-T-SCEEEECSTTCEEEE
T ss_pred CCceEeecchhhHHHHHHHHHHHHHHHHH-hhcccCCCChHHeE---EeceEeecceecccc-C-CcccccCHHHhcccc
Confidence 579999999999 6788888855443311 12 012345 2333 355553 11 1 22
Q ss_pred -----------------------ccccCCCCCCCcEeccC-----CHHHHHHHhhhh
Q psy3680 228 -----------------------KMSKSDLDSNSKIEITD-----PPEVIVRKCKKA 256 (422)
Q Consensus 228 -----------------------KMSKS~~n~~s~I~L~D-----sp~~I~kKI~~A 256 (422)
|||||.+| .|...| .++.++=.++.+
T Consensus 616 ~~~~~~~~~~~~~G~~v~~~~~eKMSKSkGN---vVdP~diIekYGADalRl~ll~~ 669 (880)
T 4arc_A 616 DEKGRIVKAKDAAGHELVYTGMSKMSKSKNN---GIDPQVMVERYGADTVRLFMMFA 669 (880)
T ss_dssp CTTCCEEEEECTTCCBCEEEEEEECCTTTTC---CCCHHHHHHHHCHHHHHHHHHHS
T ss_pred ccccccccccccCCccccccccccccCcCCC---CCCHHHHHHHcCchHHHHHHHhc
Confidence 99999987 887765 677777777775
No 75
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=83.72 E-value=0.86 Score=50.67 Aligned_cols=27 Identities=19% Similarity=0.060 Sum_probs=21.7
Q ss_pred cccccCCCCCCCcEeccC-----CHHHHHHHhhhh
Q psy3680 227 KKMSKSDLDSNSKIEITD-----PPEVIVRKCKKA 256 (422)
Q Consensus 227 ~KMSKS~~n~~s~I~L~D-----sp~~I~kKI~~A 256 (422)
+|||||.+| .|...| .++.++=.++.+
T Consensus 636 ~KMSKSkGN---vVdP~diI~~yGADalRl~ll~~ 667 (878)
T 2v0c_A 636 AVMSKSKGN---GVMVGPFVKEQGADIARITILFA 667 (878)
T ss_dssp EECSGGGTC---CCBHHHHHHHSCHHHHHHHHHHH
T ss_pred HHhhccCCC---cccHHHHHHHcCccHHHHHHhcc
Confidence 799999987 888765 677777777764
No 76
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=79.43 E-value=1.9 Score=47.32 Aligned_cols=100 Identities=16% Similarity=0.261 Sum_probs=52.9
Q ss_pred cEEEEee-cCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEee-Cceeecc--------CC------------------
Q psy3680 36 QRIFSGI-QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIV-DLHSITI--------KQ------------------ 84 (422)
Q Consensus 36 ~~i~tGi-~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIa-D~hAlt~--------~~------------------ 84 (422)
..|.+|. -|||.|||||..+.+. -+.++++ .|+++.+..+ |-|.+-. ..
T Consensus 36 ~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~ 115 (810)
T 1wkb_A 36 FYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEI 115 (810)
T ss_dssp EEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHH
T ss_pred EEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcccCchHHHHHHHHhCCCHHH
Confidence 3444443 4579999999988665 3555555 5877655332 4444410 00
Q ss_pred -----CHHH-HHHHHHHHHHHHHHcCCCCCceEEEEcCCC-cchhHH-HHHHhhccchh
Q psy3680 85 -----KHKD-LKENIQLMAASLLACGIDPQKSILFQQSQV-PEHTQL-AWVLTCLCTVN 135 (422)
Q Consensus 85 -----~~~~-i~~~~~~i~a~~lA~Gldp~k~~i~~qSdi-~e~~el-~w~l~~~~~~~ 135 (422)
++.+ ..+....+..++...|+..+=...|.-++. +.+.+. .|.+..+...|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v~~~f~~L~~~G 174 (810)
T 1wkb_A 116 LWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKG 174 (810)
T ss_dssp HHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHHHHHHHHHHHHHCC
Confidence 1111 122335678888889987662223334553 555443 45554433333
No 77
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=76.24 E-value=2.3 Score=47.19 Aligned_cols=75 Identities=19% Similarity=0.204 Sum_probs=46.5
Q ss_pred CCcEEEEe-ecCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEee-Cceeec-----c------CCCH-----------
Q psy3680 34 FPQRIFSG-IQPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIV-DLHSIT-----I------KQKH----------- 86 (422)
Q Consensus 34 ~~~~i~tG-i~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIa-D~hAlt-----~------~~~~----------- 86 (422)
++..|++| =-|||.||+||.++.+. -+.++++ .|+++.+..| |-|++- . ..++
T Consensus 34 ~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~ 113 (862)
T 1gax_A 34 PPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLER 113 (862)
T ss_dssp CEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHH
T ss_pred CcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHH
Confidence 34455555 35689999999887544 4666676 5877766554 445551 0 1111
Q ss_pred --HHHHHHHHHHHHHHHHcCCCCC
Q psy3680 87 --KDLKENIQLMAASLLACGIDPQ 108 (422)
Q Consensus 87 --~~i~~~~~~i~a~~lA~Gldp~ 108 (422)
+-..++...+..++...|+..+
T Consensus 114 ~~~~~~~~~~~~~~q~~rlG~s~D 137 (862)
T 1gax_A 114 VWQWKEESGGTILKQLKRLGASAD 137 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhCcccc
Confidence 1234556778888888887655
No 78
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=75.45 E-value=2.5 Score=47.25 Aligned_cols=69 Identities=25% Similarity=0.200 Sum_probs=43.0
Q ss_pred cCccEEeecCchhH---HHHHHHHHHHHhccccCccCCCC-eecccCCCCcccccCCCCCcccccCCCCCCCcEeccC--
Q psy3680 171 YKATHIPAGLDQIH---NINLANHLTQLFNNKFDKIFPIP-QLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD-- 244 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~---hielaRdia~r~n~~~g~~f~~P-~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D-- 244 (422)
+-+|+...|.||.. |-.+....+ -++. .| ..++ .+.++... + |+|||||.+| .|.+.|
T Consensus 547 ~P~Dl~~~G~D~~r~wf~~~l~~s~~-~~g~-------~Pfk~v~---~hG~V~d~-~-G~KMSKSlGN---vV~P~dvi 610 (917)
T 1ffy_A 547 FPADMYLEGSDQYRGWFNSSITTSVA-TRGV-------SPYKFLL---SHGFVMDG-E-GKKMSKSLGN---VIVPDQVV 610 (917)
T ss_dssp SSBSEEEEEGGGGTTHHHHHHHHHHH-HHSS-------CSBSEEE---EECCEECT-T-SCCCCSSSSC---CCCHHHHH
T ss_pred CCceEEEEEecccccHHHHHHHHHHH-hhCC-------Cccccee---EeeeEEcC-C-CcCcccccCC---cCChHHHH
Confidence 56899999999973 334444444 1221 23 3344 35566543 3 5899999987 887765
Q ss_pred ---CHHHHHHHhhh
Q psy3680 245 ---PPEVIVRKCKK 255 (422)
Q Consensus 245 ---sp~~I~kKI~~ 255 (422)
.++.++=.+..
T Consensus 611 ~~yGaDalR~~lls 624 (917)
T 1ffy_A 611 KQKGADIARLWVSS 624 (917)
T ss_dssp HHTCHHHHHHHHHT
T ss_pred HhCCHHHHHHHHhc
Confidence 56666655554
No 79
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=67.38 E-value=4.8 Score=44.67 Aligned_cols=73 Identities=22% Similarity=0.274 Sum_probs=46.7
Q ss_pred CcEEEEe-ecCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEeeCceeec---------cCCCHHH-HHHHHHHHHHHH
Q psy3680 35 PQRIFSG-IQPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIVDLHSIT---------IKQKHKD-LKENIQLMAASL 100 (422)
Q Consensus 35 ~~~i~tG-i~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIaD~hAlt---------~~~~~~~-i~~~~~~i~a~~ 100 (422)
+..+++| --|||.|||||..+.+. -+.++++ .|+++.+ +.+++..= ...++.+ ..++...+..++
T Consensus 34 k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~-~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~ 112 (878)
T 2v0c_A 34 KQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLH-PMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESL 112 (878)
T ss_dssp EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEC-CCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEe-ecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3566667 45679999999887654 3555555 5876653 44444321 1234443 356678889999
Q ss_pred HHcCCCCC
Q psy3680 101 LACGIDPQ 108 (422)
Q Consensus 101 lA~Gldp~ 108 (422)
.+.|+..+
T Consensus 113 ~~LGi~~D 120 (878)
T 2v0c_A 113 RLMGILYD 120 (878)
T ss_dssp HHTTCCCC
T ss_pred HHhCCccC
Confidence 99998766
No 80
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=65.79 E-value=2.6 Score=46.42 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=32.3
Q ss_pred cCCCcEEEEee-cCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEee-Cceee
Q psy3680 32 ISFPQRIFSGI-QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIV-DLHSI 80 (422)
Q Consensus 32 ~~~~~~i~tGi-~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIa-D~hAl 80 (422)
.+++..++.|. -|||.|||||..+.+. -+.++++ .|+++.+..+ |-|.+
T Consensus 36 ~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Gl 89 (821)
T 1ile_A 36 GGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGL 89 (821)
T ss_dssp TSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHH
T ss_pred CCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCc
Confidence 34456677777 7889999999887554 4556666 5876654443 44554
No 81
>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*
Probab=63.23 E-value=7.6 Score=37.37 Aligned_cols=58 Identities=12% Similarity=0.161 Sum_probs=37.0
Q ss_pred CccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHH
Q psy3680 172 KATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEV 248 (422)
Q Consensus 172 ~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~ 248 (422)
..+..--|..-.|.+.+-|.+++.+|- |..++ ..+.+.. .| |..||++ .++|++...+
T Consensus 141 ~p~~~~FG~Kd~qql~~l~~m~~dl~~--------~V~iv---~vp~vr~-~d-GlaiSSr------n~yLs~~eR~ 198 (283)
T 3ag6_A 141 MPDYAYFGKKDAQQLAIVEQMVKDFNH--------AVEII---GIDIVRE-AD-GLAKSSR------NVYLTEQERQ 198 (283)
T ss_dssp CCSEEEEEGGGHHHHHHHHHHHHHTTC--------CCEEE---EECCCBC-TT-SCBCCGG------GGGCCHHHHH
T ss_pred cCceEEECCCCccCHHHHHHHHHHcCC--------eEEEE---ecCcEEe-CC-CCEecCC------ccccCHHHHH
Confidence 566667788889999999999998872 32222 1222221 13 5799988 6777654333
No 82
>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken STR genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A
Probab=59.85 E-value=15 Score=35.14 Aligned_cols=56 Identities=9% Similarity=0.136 Sum_probs=36.8
Q ss_pred CccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCH
Q psy3680 172 KATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPP 246 (422)
Q Consensus 172 ~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp 246 (422)
+.|..--|..-.|.+++-|.+++.+|- |..++ ..+.+..- | |.+||++ .|+|++..
T Consensus 136 ~Pd~~~FG~kd~qq~~~l~~~~~dl~~--------~v~iv---~~p~vr~~-d-GlaiSSr------nirLs~~e 191 (276)
T 1v8f_A 136 QPQRAYFGEKDYQQLLVVRRMVRDLGF--------PVEVV---GVPTVREE-D-GLALSSR------NVYLSPET 191 (276)
T ss_dssp CCSEEEEEGGGHHHHHHHHHHHHHHTC--------CCEEE---EECCCBCT-T-SCBCCGG------GGGCCHHH
T ss_pred CCCEEEECCCCCcCHHHHHHHHHHcCC--------eEEEE---ecCcEEcC-C-CCEeEEe------EEEeCHHH
Confidence 678677788888999999999998872 32333 12233221 3 5799988 67776543
No 83
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}
Probab=57.30 E-value=24 Score=33.83 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=36.5
Q ss_pred CccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHH
Q psy3680 172 KATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEV 248 (422)
Q Consensus 172 ~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~ 248 (422)
+.+..--|..-.|.+++-|.+++.+|- |..++ ..+.+..- | |..||++ .++|++..-+
T Consensus 140 ~p~~~~FG~kd~qq~~~l~~~~~dl~~--------~v~iv---~vp~vr~~-d-GlaiSSr------n~yLs~~er~ 197 (280)
T 2ejc_A 140 KPHRAYFGQKDAQQFRVLRRMVRDLNM--------DVEMI---ECPIVREP-D-GLAMSSR------NVYLSPEERQ 197 (280)
T ss_dssp CCSEEEEEGGGHHHHHHHHHHHHHTTC--------CCEEE---EECCCBCT-T-SCBCCGG------GGGCCHHHHH
T ss_pred cCceEEeCCCCCcCHHHHHHHHHHcCC--------eEEEE---eeCcEEcC-C-CCEeccC------cccCCHHHHH
Confidence 566666788888999999999988872 22221 12222221 3 4799988 6777654333
No 84
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=56.74 E-value=3.7 Score=44.55 Aligned_cols=71 Identities=17% Similarity=0.089 Sum_probs=43.6
Q ss_pred EEeecCchhHHHHHHHHHHHHhccc-------cCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccC---
Q psy3680 175 HIPAGLDQIHNINLANHLTQLFNNK-------FDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITD--- 244 (422)
Q Consensus 175 ~vpvG~DQ~~hielaRdia~r~n~~-------~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~D--- 244 (422)
+..+|.|+..+++.-- .|.-.... ++ -++.|..++ .+..|.. + |+|||||.+| .|+..|
T Consensus 292 ~h~~GkDii~fH~~~w-pA~l~~~~~~l~~d~~r-g~~~Pk~v~---~hG~v~~--~-G~KMSKS~GN---vV~p~d~i~ 360 (722)
T 1rqg_A 292 IHFIGKDNIPFHAIFW-PAFLMAYGKYKDEEVEA-EWNLPYDIP---ANEYLTL--E-GKKFSTSRNW---AIWVHEFLD 360 (722)
T ss_dssp EEEEEGGGHHHHHTHH-HHHHHTTCCBCSSSCCB-CBCCCSBCC---EECCEEE--T-TEECBTTTTB---SCBHHHHTT
T ss_pred EEEccccccccchhhh-HHHHhccCCCccccccc-CCCCCCEEE---EeeeEEe--C-CeeeeeeCCC---cCCHHHHHH
Confidence 6778999987765321 11111110 00 135676665 3555543 3 5899999987 888765
Q ss_pred --CHHHHHHHhhhh
Q psy3680 245 --PPEVIVRKCKKA 256 (422)
Q Consensus 245 --sp~~I~kKI~~A 256 (422)
+++.++=.+.+.
T Consensus 361 ~ygaDalR~~ll~~ 374 (722)
T 1rqg_A 361 VFPADYLRYYLTTI 374 (722)
T ss_dssp TSCHHHHHHHHHHT
T ss_pred hcCchHHHHHHHhc
Confidence 688888777775
No 85
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=54.18 E-value=13 Score=38.17 Aligned_cols=40 Identities=33% Similarity=0.503 Sum_probs=28.6
Q ss_pred EEeecCCCccchhhHHHHHH--HHHHHHH-cCCcE--EEEeeCce
Q psy3680 39 FSGIQPTGTLHLGNYFGAVQ--TWSALQN-KGEDV--IFCIVDLH 78 (422)
Q Consensus 39 ~tGi~PTG~lHLGny~g~i~--~~~~lq~-~g~~~--~ilIaD~h 78 (422)
|+.--|||.+|+||..+++. -+.++.+ .|+++ ..-|+||=
T Consensus 36 ~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G 80 (464)
T 3fnr_A 36 YVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAG 80 (464)
T ss_dssp CCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCH
T ss_pred eCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCcc
Confidence 67889999999999887765 3444544 67654 45677764
No 86
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=53.82 E-value=5.1 Score=30.29 Aligned_cols=15 Identities=20% Similarity=0.049 Sum_probs=12.7
Q ss_pred eEeEecCCcEEEeec
Q psy3680 384 VSYRWADYQLTLAFD 398 (422)
Q Consensus 384 ~~~~~~~~~~~~~~~ 398 (422)
|--||.||+||||-+
T Consensus 22 VL~rw~DG~fYLGtI 36 (69)
T 2xk0_A 22 VFIKCNDGRFYLGTI 36 (69)
T ss_dssp EEEECTTSCEEEEEE
T ss_pred EEEEecCCCEEEEEE
Confidence 556899999999976
No 87
>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzym ligase, drug design, ATP-binding, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ...
Probab=50.24 E-value=36 Score=32.89 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=23.0
Q ss_pred cCccEEeecCchhHHHHHHHHHHHHhc
Q psy3680 171 YKATHIPAGLDQIHNINLANHLTQLFN 197 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~hielaRdia~r~n 197 (422)
.+.|...-|..-.|.+.+-|.+++.+|
T Consensus 151 v~P~~a~FG~Kd~qql~~lr~mv~dl~ 177 (301)
T 3cov_A 151 VRPDRVFFGEKDYQQLVLIRQLVADFN 177 (301)
T ss_dssp HCCSEEEEETTSHHHHHHHHHHHHHTT
T ss_pred cCCCeEEECCCcccCHHHHHHHHHHcC
Confidence 367777788889999999999999887
No 88
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=49.03 E-value=6.9 Score=28.61 Aligned_cols=15 Identities=40% Similarity=0.408 Sum_probs=12.6
Q ss_pred eEeEecCCcEEEeec
Q psy3680 384 VSYRWADYQLTLAFD 398 (422)
Q Consensus 384 ~~~~~~~~~~~~~~~ 398 (422)
|==||.||+||||=+
T Consensus 10 VLarwsDG~fYlGtI 24 (58)
T 4hcz_A 10 VLARWTDGLLYLGTI 24 (58)
T ss_dssp EEEECTTSCEEEEEE
T ss_pred EEEEecCCCEEeEEE
Confidence 456899999999965
No 89
>3oqi_A YVMC, putative uncharacterized protein YVMC; tRNA, rossmann fold, ligase; HET: NHE; 1.70A {Bacillus licheniformis} PDB: 3oqh_A* 3oqj_A* 3s7t_A* 3oqi_B*
Probab=47.54 E-value=93 Score=29.35 Aligned_cols=84 Identities=17% Similarity=0.316 Sum_probs=60.4
Q ss_pred cEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCceeec----cCCCHH--------HHHHHHHHHHHHHHHc
Q psy3680 36 QRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSIT----IKQKHK--------DLKENIQLMAASLLAC 103 (422)
Q Consensus 36 ~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hAlt----~~~~~~--------~i~~~~~~i~a~~lA~ 103 (422)
..++.||-|=-+-|=+.++-.+..|. +...-++.|+++|.++-- ...++. +++.+.+.+...|.++
T Consensus 30 ~HallGISpgNsyFs~d~L~~Li~Wa--~~~F~~vdVli~D~~~~~~l~A~G~~~~~A~rKArre~~~~r~~i~ral~~~ 107 (257)
T 3oqi_A 30 RHVLVGISPFNSRFSEDYIHRLIAWA--VREFQSVSVLLAGKEAANLLEALGTPHGKAERKVRKEVSRNRRFAEKALEAH 107 (257)
T ss_dssp CEEEEEECTTSTTCCHHHHHHHHHHH--HHHCSEEEEEECCTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCcccCHHHHHHHHHHH--HccCCceEEEeCCHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 47899999988999999988877784 665568999999986432 233443 2333445677778888
Q ss_pred CCCCCceEEEEcCCCcchhH
Q psy3680 104 GIDPQKSILFQQSQVPEHTQ 123 (422)
Q Consensus 104 Gldp~k~~i~~qSdi~e~~e 123 (422)
|++++ .+..=||+..+..
T Consensus 108 g~~~~--~v~~~Sd~~~~~~ 125 (257)
T 3oqi_A 108 GGNPE--DIHTFSDFANQTA 125 (257)
T ss_dssp TCCTT--CEEETTTTTTCHH
T ss_pred CCCcc--cceeHHHhhcCHH
Confidence 99887 5777799755443
No 90
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=45.90 E-value=7.8 Score=43.42 Aligned_cols=44 Identities=18% Similarity=0.201 Sum_probs=28.8
Q ss_pred CCcEEEEee-cCCCccchhhHHHHHH--HHHHHHH-cCCcEEEEeeCce
Q psy3680 34 FPQRIFSGI-QPTGTLHLGNYFGAVQ--TWSALQN-KGEDVIFCIVDLH 78 (422)
Q Consensus 34 ~~~~i~tGi-~PTG~lHLGny~g~i~--~~~~lq~-~g~~~~ilIaD~h 78 (422)
++..++.|. -|||.||+||.+..+. -+.++++ .|+++. ++.+||
T Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl-~~~GwD 81 (967)
T 1wz2_A 34 KKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVL-FPMAWH 81 (967)
T ss_dssp GCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCB-CCCCBB
T ss_pred CcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccC-CCCcCC
Confidence 456677766 4689999999887544 4666666 576653 444443
No 91
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.43 E-value=10 Score=28.12 Aligned_cols=15 Identities=33% Similarity=0.333 Sum_probs=12.9
Q ss_pred eEeEecCCcEEEeec
Q psy3680 384 VSYRWADYQLTLAFD 398 (422)
Q Consensus 384 ~~~~~~~~~~~~~~~ 398 (422)
|=-||.||.||||-+
T Consensus 14 VLarWsDGlfYlgtV 28 (63)
T 2e5q_A 14 VLCRWTDGLYYLGKI 28 (63)
T ss_dssp EEEECTTSCEEEEEE
T ss_pred EEEEecCCCEEEEEE
Confidence 566999999999965
No 92
>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp} PDB: 3qtt_A*
Probab=40.30 E-value=28 Score=33.02 Aligned_cols=69 Identities=16% Similarity=0.146 Sum_probs=48.5
Q ss_pred cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccCCCCCCCcEeccCCHHHHH
Q psy3680 171 YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIV 250 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS~~n~~s~I~L~Dsp~~I~ 250 (422)
.++|...-|+--+|-+.+.|.+++.+| .|.-++ ..|++-.- | |=-||+- ..+|++...+..
T Consensus 142 v~Pd~A~FGeKD~QQl~vIrrmV~DL~--------~pv~Iv---~~PtvRe~-D-GLA~SSR------N~yLs~~eR~~A 202 (264)
T 3n8h_A 142 TKPNNLYLGEKDYQQVMLIKQLVKDFF--------INTKII---VCPTQRQP-S-GLPLSSR------NKNLTSTDIEIA 202 (264)
T ss_dssp HCCSEEEEETTSHHHHHHHHHHHHHTT--------CCCEEE---EECCCBCT-T-SCBCCGG------GGGCCHHHHHHH
T ss_pred cCCCeEEEchhHHHHHHHHHHHHHHhC--------CCceEE---EECceECC-C-CChhhhh------cccCCHHHHHHH
Confidence 378999999999999999999999988 355555 35565553 3 3577765 456766655555
Q ss_pred HHhhhhcc
Q psy3680 251 RKCKKALT 258 (422)
Q Consensus 251 kKI~~A~t 258 (422)
-.|.++.+
T Consensus 203 ~~L~~aL~ 210 (264)
T 3n8h_A 203 NKIYEILR 210 (264)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 93
>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S genomics center for infectious disease, ssgcid, ligase; HET: AMP; 2.25A {Burkholderia thailandensis} SCOP: c.26.1.0
Probab=39.62 E-value=13 Score=35.71 Aligned_cols=49 Identities=14% Similarity=0.187 Sum_probs=35.3
Q ss_pred cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccC
Q psy3680 171 YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKS 232 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS 232 (422)
.++|....|..-.|.+.+-|.+++.+|- |..++ ..+++-.- | |-.||+-
T Consensus 140 v~Pd~A~FG~Kd~qql~~ir~mv~dl~~--------~v~iv---~~ptvRe~-d-Gla~SSR 188 (283)
T 3uk2_A 140 VQPRVAVFGKKDYQQLMIVRRMCQQLAL--------PVEIV---AAETVRDA-D-GLALSSR 188 (283)
T ss_dssp HCCSEEEEETTSHHHHHHHHHHHHHTTC--------CCEEE---EECCCBCT-T-SCBCCGG
T ss_pred cCCCeeEeCCchhhhHHHHHHHHHHcCC--------ceEEE---ecCCEECC-C-CCEEeec
Confidence 4789999999999999999999998872 33343 23444343 3 4688876
No 94
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.89 E-value=12 Score=28.09 Aligned_cols=15 Identities=40% Similarity=0.408 Sum_probs=13.0
Q ss_pred eEeEecCCcEEEeec
Q psy3680 384 VSYRWADYQLTLAFD 398 (422)
Q Consensus 384 ~~~~~~~~~~~~~~~ 398 (422)
|==||.||.||||-+
T Consensus 16 VLarWsDGlfYlGtV 30 (68)
T 2e5p_A 16 VLARWTDGLLYLGTI 30 (68)
T ss_dssp EEEECTTSSEEEEEE
T ss_pred EEEEecCCcEEEeEE
Confidence 567999999999965
No 95
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=37.19 E-value=8.3 Score=29.77 Aligned_cols=15 Identities=40% Similarity=0.408 Sum_probs=13.2
Q ss_pred eEeEecCCcEEEeec
Q psy3680 384 VSYRWADYQLTLAFD 398 (422)
Q Consensus 384 ~~~~~~~~~~~~~~~ 398 (422)
|=-||.||+||||-+
T Consensus 33 VLarwsDGlfYLGTI 47 (79)
T 2m0o_A 33 VLARWTDGLLYLGTI 47 (79)
T ss_dssp EEBCCTTSCCCEEEE
T ss_pred EEEEecCCCEEeEEE
Confidence 667999999999976
No 96
>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}
Probab=36.58 E-value=16 Score=35.58 Aligned_cols=49 Identities=12% Similarity=0.128 Sum_probs=36.1
Q ss_pred cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccC
Q psy3680 171 YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKS 232 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS 232 (422)
.++|...-|.--.|-+.+.|.+++.+| .|.-++ ..|++-.- | |--||+-
T Consensus 160 v~Pd~A~FGeKD~QQl~vIrrmV~DL~--------~pVeIv---~~PtvRe~-D-GLA~SSR 208 (314)
T 3inn_A 160 VGPDAAYFGEKDFQQLVIIRRMVDDMA--------IPVRIV---GVETVRED-D-GLACSSR 208 (314)
T ss_dssp HCCSEEEEETTSHHHHHHHHHHHHHTT--------CCCEEE---EECCCBCT-T-SCBCCGG
T ss_pred cCCCEEEECccHHHHHHHHHHHHHHcC--------CceEEE---ecCcEECC-C-CCeeccC
Confidence 478999999999999999999999988 355555 25555443 3 3577766
No 97
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*
Probab=27.57 E-value=21 Score=34.34 Aligned_cols=49 Identities=10% Similarity=0.116 Sum_probs=37.1
Q ss_pred cCccEEeecCchhHHHHHHHHHHHHhccccCccCCCCeecccCCCCcccccCCCCCcccccC
Q psy3680 171 YKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKS 232 (422)
Q Consensus 171 ~~a~~vpvG~DQ~~hielaRdia~r~n~~~g~~f~~P~~li~~~~~~~lp~L~~~~~KMSKS 232 (422)
.++|...-|+--+|-+.+.|.+++-+| .|.-++ ..|++-.- | |=-||+-
T Consensus 141 v~Pd~A~FGeKD~QQl~vIrrmV~DL~--------~pv~Iv---~~PtvRe~-D-GLA~SSR 189 (285)
T 3mxt_A 141 LNPDIVYMGQKDAQQCVVVRHMVDDLN--------FDLKIQ---ICPIIREE-D-GLAKSSR 189 (285)
T ss_dssp HCCSEEEEEGGGHHHHHHHHHHHHHTT--------CSSEEE---EECCCBCT-T-SCBCCGG
T ss_pred cCCCEeEEcchHHHHHHHHHHHHHHcC--------CCceEE---EeCceECC-C-CCchhhc
Confidence 478999999999999999999999998 355555 35565553 3 3577765
No 98
>3oqv_A ALBC; rossman fold, cyclodipeptide synthase, aminoacyl-tRNA, prote binding; 1.90A {Streptomyces noursei}
Probab=26.95 E-value=1e+02 Score=28.92 Aligned_cols=88 Identities=16% Similarity=0.138 Sum_probs=62.9
Q ss_pred CCcEEEEeecCCCccchhhHHHHHHHHHHHHHcCCcEEEEeeCcee-ec---cCCCHH--------HHHHHHHHHHHHHH
Q psy3680 34 FPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHS-IT---IKQKHK--------DLKENIQLMAASLL 101 (422)
Q Consensus 34 ~~~~i~tGi~PTG~lHLGny~g~i~~~~~lq~~g~~~~ilIaD~hA-lt---~~~~~~--------~i~~~~~~i~a~~l 101 (422)
+...++.||-|=-+-|=+.++-.+..|. +...-++-|+++|.+. .+ ...++. +++...+.+...|.
T Consensus 28 ~g~HallGVSpgNsyFs~drl~~li~Wa--~~~F~~vdVli~D~~~~~tl~A~G~~~~~A~rKarr~~~~~r~~i~ral~ 105 (247)
T 3oqv_A 28 RGEHALIGISAGNSYFSQKNTVMLLQWA--GQRFERTDVVYVDTHIDEMLIADGRSAQEAERSVKRTLKDLRRRLRRSLE 105 (247)
T ss_dssp CEEEEEEEEESSCTTCCHHHHHHHHHHH--HHHEEEEEEEEECSSHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCcccCHHHHHHHHHHH--HccCCceEEEeCChHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999988999999988877784 5544589999999963 22 234442 23334456777788
Q ss_pred HcCCCCCceEEEEcCCCcchhH
Q psy3680 102 ACGIDPQKSILFQQSQVPEHTQ 123 (422)
Q Consensus 102 A~Gldp~k~~i~~qSdi~e~~e 123 (422)
++|.+.++..+..=||+..+..
T Consensus 106 ~~~~~~~~~rv~~~Sd~~~~~~ 127 (247)
T 3oqv_A 106 SVGDHAERFRVRSLSELQETPE 127 (247)
T ss_dssp HHCTTGGGEEEEEHHHHTTSHH
T ss_pred HhCCCccCceeeeHHHhhCCHH
Confidence 8999999888887788654433
No 99
>4ac1_X Endo-N-acetyl-beta-D-glucosaminidase; hydrolase, glycoside hydrolase family 18, deglycosylation; HET: NAG; 1.30A {Hypocrea jecorina}
Probab=25.02 E-value=2.4e+02 Score=26.35 Aligned_cols=70 Identities=10% Similarity=0.158 Sum_probs=44.5
Q ss_pred EEEEeecCCCccchhh-------HHHHHHHHHHHHHcCCcEEEEeeCcee--e---c-cCCCHHHHHHHHHHHHHHHHHc
Q psy3680 37 RIFSGIQPTGTLHLGN-------YFGAVQTWSALQNKGEDVIFCIVDLHS--I---T-IKQKHKDLKENIQLMAASLLAC 103 (422)
Q Consensus 37 ~i~tGi~PTG~lHLGn-------y~g~i~~~~~lq~~g~~~~ilIaD~hA--l---t-~~~~~~~i~~~~~~i~a~~lA~ 103 (422)
..+..+.+.|.+|+.. +-.+......+|.+|.++.+.|+++.. . . +..+.+........+...+...
T Consensus 38 ~af~~~~~~g~i~~~d~~p~~~~~~~l~~~i~~~q~~g~KvllsiGG~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 117 (283)
T 4ac1_X 38 VCSFHINQGGVVHLNDFPPDDPHFYTLWNETITMKQAGVKVMGMVGGAAPGSFNTQTLDSPDSATFEHYYGQLRDAIVNF 117 (283)
T ss_dssp EEEEECCTTSCCEETTBCTTSGGGHHHHHHHHHHHHTTCEEEEEEETTSSCSSSTTTTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCeEEECCCCccchHHHHHHHHHHHHHcCCCEEEEEEcCCCCCCCcccccccccHHHHHHHHHHHHHHHHHc
Confidence 4577889999998853 122223456678899999999999852 1 1 2334544444444555556666
Q ss_pred CCC
Q psy3680 104 GID 106 (422)
Q Consensus 104 Gld 106 (422)
|+|
T Consensus 118 ~~d 120 (283)
T 4ac1_X 118 QLE 120 (283)
T ss_dssp TCS
T ss_pred CCC
Confidence 775
No 100
>3zta_A MTR, anti-sigma-factor antagonist (STAS) domain protei; signaling, signal transduction, phosphorylation, protein-Pro interaction; 2.70A {Moorella thermoacetica}
Probab=23.15 E-value=2e+02 Score=23.30 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=48.9
Q ss_pred CCChhHHHHHHHHHHHhhcCcHHHHHHHHhcCHHHH---HHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3680 298 HLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHL---EKVLLDGSIRAQAIAVETWDEVKSA 358 (422)
Q Consensus 298 ~~~~~dlK~~Lae~i~~~l~pir~~~~~l~~~~~~l---~~iL~~Ga~kAr~iA~~tl~~vr~a 358 (422)
+.+..-++-.|-+.+..++.-||+.|..+.+...|+ .+-+..|..-.-+.|-+|-.+|-+.
T Consensus 73 gyhievlqlilekildsfisvireqyhdlqaaasyittvrdhifkgtsfllkmalqtqreviqk 136 (146)
T 3zta_A 73 GYHIEVLQLILEKILDSFISVIREQYHDLQAAASYITTVRDHIFKGTSFLLKMALQTQREVIQK 136 (146)
T ss_dssp TCCTHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 788889999999999999999999998887666665 4556788877778888887776543
No 101
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=21.96 E-value=1.6e+02 Score=20.06 Aligned_cols=32 Identities=28% Similarity=0.161 Sum_probs=25.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC
Q psy3680 331 EHLEKVLLDGSIRAQAIAVETWDEVKSAAVGG 362 (422)
Q Consensus 331 ~~l~~iL~~Ga~kAr~iA~~tl~~vr~avgl~ 362 (422)
+++++-|++-..+-.+|.++||.+--..+||.
T Consensus 6 eeverklkefvrrhqeitqetlheyaqklgln 37 (52)
T 1y66_A 6 EEVERKLKEFVRRHQEITQETLHEYAQKLGLN 37 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 45677777777777888888888888888865
No 102
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=21.66 E-value=37 Score=25.46 Aligned_cols=16 Identities=31% Similarity=0.268 Sum_probs=13.3
Q ss_pred eeEeEecCCcEEEeec
Q psy3680 383 LVSYRWADYQLTLAFD 398 (422)
Q Consensus 383 ~~~~~~~~~~~~~~~~ 398 (422)
.|-=||.||.||+|-+
T Consensus 19 dVLA~wtDGl~Y~gtI 34 (66)
T 2eqj_A 19 DVLARWSDGLFYLGTI 34 (66)
T ss_dssp EEEEECTTSCEEEEEE
T ss_pred EEEEEEccCcEEEeEE
Confidence 4667889999999976
No 103
>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1
Probab=20.43 E-value=59 Score=24.01 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=14.1
Q ss_pred ceeEeEecCCcEEEeec
Q psy3680 382 LLVSYRWADYQLTLAFD 398 (422)
Q Consensus 382 ~~~~~~~~~~~~~~~~~ 398 (422)
.|..|++.||+||.-+.
T Consensus 2 ~Fei~~~~~G~frfrLk 18 (64)
T 3bid_A 2 YFEIYKDAKGEYRWRLK 18 (64)
T ss_dssp EEEEEECTTSCEEEEEE
T ss_pred EEEEEECCCCCEEEEEE
Confidence 58999999999986553
Done!