RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3680
(422 letters)
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS,
induced FIT, ligase; HET: TYM; 1.72A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A*
1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A*
1d2r_A 3u1v_A
Length = 328
Score = 459 bits (1184), Expect = e-163
Identities = 125/326 (38%), Positives = 198/326 (60%), Gaps = 4/326 (1%)
Query: 36 QRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQL 95
+ IFSGIQP+G + +GNY GA++ + LQ++ + FCIVD H+IT+ Q +L++NI+
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHE-YNCYFCIVDQHAITVWQDPHELRQNIRR 60
Query: 96 MAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPT 155
+AA LA GIDP ++ LF QS+VP H Q AW+L C+ + L M + EK A +
Sbjct: 61 LAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGKEAVSA 120
Query: 156 GLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDES 215
GL YP L AADILLY +P G DQ +I L L + FN ++ ++F IP+
Sbjct: 121 GLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVG 180
Query: 216 AGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVS 275
A ++ SL DP+KKMSKSD + + I + D + I +K K A+TD + YD E +P +S
Sbjct: 181 A-RIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGTIRYDKEAKPGIS 239
Query: 276 NLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEK 335
NL+ +++ + Q +++ Q + G +K LA V++E +PI++ + M+S+E L++
Sbjct: 240 NLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWMESEE-LDR 298
Query: 336 VLLDGSIRAQAIAVETWDEVKSAAVG 361
VL +G+ +A +A E +++ A+G
Sbjct: 299 VLDEGAEKANRVASEMVRKMEQ-AMG 323
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis,
translation, class I tRNA synth rossman fold, high
motif, KMSKS motif; 2.80A {Bacillus subtilis}
Length = 388
Score = 458 bits (1181), Expect = e-161
Identities = 128/343 (37%), Positives = 207/343 (60%), Gaps = 4/343 (1%)
Query: 19 SSGQQIRHYSDHKISFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLH 78
S + + + Q IFSGIQP+G++ LGNY GA++ + LQ+ + FCIVD H
Sbjct: 19 DSTENLYFQGIDPFTMKQTIFSGIQPSGSVTLGNYIGAMKQFVELQHD-YNSYFCIVDQH 77
Query: 79 SITIKQKHKDLKENIQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLN 138
+IT+ Q +L++NI+ +AA LA G+DP+K+ LF QS+VP H Q W++ C+ + L
Sbjct: 78 AITVPQDRLELRKNIRNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGELE 137
Query: 139 HMPTYVEKCAELKQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNN 198
M + +K + +GL YP L AADILLY +P G DQ ++ L +L + FN
Sbjct: 138 RMTQFKDKSKGNEAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAERFNK 197
Query: 199 KFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALT 258
K++ IF IP++ A ++ SL DP KKMSKSD + + I + D P+ + +K K A+T
Sbjct: 198 KYNDIFTIPEVKIPKVGA-RIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKSAVT 256
Query: 259 DCTSAVTYDPENRPAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKP 318
D V +D EN+P VSNL+T++++ N +++ + + G++K LA+V+V KP
Sbjct: 257 DSEGIVKFDKENKPGVSNLLTIYSILGNTTIEELEAKYEGKGYGEFKGDLAEVVVNALKP 316
Query: 319 IRDEIEYLMKSKEHLEKVLLDGSIRAQAIAVETWDEVKSAAVG 361
I+D L++S+E L+++L +G+ RA A + ++++ A+G
Sbjct: 317 IQDRYYELIESEE-LDRILDEGAERANRTANKMLKKMEN-AMG 357
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid,
structural genomics, niaid, center for structural
genomics infectious diseases; 1.95A {Yersinia pestis}
Length = 346
Score = 447 bits (1153), Expect = e-158
Identities = 127/337 (37%), Positives = 191/337 (56%), Gaps = 6/337 (1%)
Query: 28 SDHKISFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHK 87
S +S +FSG QP+G L +GNY GA++ W +Q+ D I+CIVDLH+IT +Q
Sbjct: 8 SKPTVSSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDD-YDCIYCIVDLHAITARQDPA 66
Query: 88 DLKENIQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKC 147
L++ A LACGIDP+KS +F QS VPEH+QL+W L C L+ M + +K
Sbjct: 67 LLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMTQFKDKS 126
Query: 148 AELKQS-PTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPI 206
A ++ GLF YPVL AADILLY+ +P G DQ ++ L+ + FNN + IF I
Sbjct: 127 ARYAENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNLYGDIFKI 186
Query: 207 PQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTS--AV 264
P+ A +V SL+DP+KKMSKSD + N+ IE+ + P+ +V+K K+A+TD +
Sbjct: 187 PEPFIPKAGA-RVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRAMTDSDEPALI 245
Query: 265 TYDPENRPAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIE 324
YD E + VSNL+ + + T Q ++ Q G K +AD + +++
Sbjct: 246 RYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLKGAVADAVSGMLSELQERYR 305
Query: 325 YLMKSKEHLEKVLLDGSIRAQAIAVETWDEVKSAAVG 361
+ + L+ V+ +G+ +A+A A T +V A+G
Sbjct: 306 TYREDEALLQDVMREGAAKARARAQVTLAKVYE-AIG 341
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, rossmann
fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Length = 341
Score = 440 bits (1134), Expect = e-155
Identities = 126/333 (37%), Positives = 192/333 (57%), Gaps = 10/333 (3%)
Query: 36 QRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQL 95
+ SG+QP+G L +GNY GA++ W +Q+ D +C+VDLH+IT++Q + L E
Sbjct: 7 PIVLSGVQPSGELSIGNYLGALRQWQQMQDD-YDCQYCVVDLHAITVRQDPQALHEATLD 65
Query: 96 MAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQS-P 154
A LA G+DP+KS LF QS VPEH QL WVL C + L+ M + +K A
Sbjct: 66 ALAICLAVGVDPKKSTLFVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYANDVN 125
Query: 155 TGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKF---DKIFPIPQLLP 211
GLF YPVL AADILLY A +P G DQ ++ LA + FNN + IF IP+
Sbjct: 126 AGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYI 185
Query: 212 QDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSA--VTYDPE 269
+A +V SL+D +KKMSKSD + + I + + P+ I++K KA TD + + YD E
Sbjct: 186 PTVNA-RVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINKAQTDAETPPRIAYDVE 244
Query: 270 NRPAVSNLITLHALCTNQLPQDICTQVKHLNT-GQYKLLLADVLVEKFKPIRDEIEYLMK 328
N+ ++NL+ L++ T + +I Q + G +K + + +V +P++ E + +
Sbjct: 245 NKAGIANLMGLYSAATGKTFAEIEAQYAGVEMYGPFKKDVGEAVVAMLEPVQAEYQRIRN 304
Query: 329 SKEHLEKVLLDGSIRAQAIAVETWDEVKSAAVG 361
+E+L V+ DG+ +A A A++T +V + AVG
Sbjct: 305 DREYLNSVMRDGAEKASAKALQTLKKVYA-AVG 336
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase,
structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma
pneumoniae}
Length = 348
Score = 430 bits (1109), Expect = e-151
Identities = 106/342 (30%), Positives = 168/342 (49%), Gaps = 21/342 (6%)
Query: 36 QRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQL 95
+R +GIQ +G HLGNY G +Q+ LQ + + + DLHSIT+ + + LK+N
Sbjct: 5 KRALTGIQASGKQHLGNYLGVMQSLIELQEQC-QLFVFVADLHSITVDFQPQALKQNNFD 63
Query: 96 MAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQS-- 153
+ +LLA G+DPQK+ LF QS + EH+ + +++ + L M + K AE ++
Sbjct: 64 LVRTLLAVGLDPQKACLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPN 123
Query: 154 -----PTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQ 208
PTGL YP L A DILLY+ +P G DQ ++ L L Q KF +PQ
Sbjct: 124 GTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQ 183
Query: 209 LLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDP 268
+ ++ ++ L DP+KKMSKS + N I + DP EV+V+K ++A TD + + +
Sbjct: 184 FVQNKDTN-RIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQATTDSFNKIRFAS 242
Query: 269 ENRPAVSNLITLHALCTNQ---------LPQDICTQVKHLNTGQYKLLLADVLVEKFKPI 319
+ +P V+N++T+ + L D+ + K L + V I
Sbjct: 243 KTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTKSYLDLKNALTEATVNLLVNI 302
Query: 320 RDEIEYLMKSKEHLEKVLLDGSIRAQAIAVETWDEVKSAAVG 361
+ + E + +E + L G +AQA A T G
Sbjct: 303 QRKREQIS--REQVFNCLQAGKNQAQATARTTLALFYD-GFG 341
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase,
translation, structural GEN NPPSFA; 2.50A {Thermus
thermophilus}
Length = 337
Score = 392 bits (1010), Expect = e-136
Identities = 118/330 (35%), Positives = 180/330 (54%), Gaps = 14/330 (4%)
Query: 36 QRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGE-DVIFCIVDLHSITIKQKH--KDLKEN 92
+R+ SGIQP+G +H+GNY GA++ W A+ K D FCIVD H++T + L +
Sbjct: 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQR 61
Query: 93 IQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQ 152
A +A G+DP+K LF QS VPEHT+L+WV T L + L M + +K ++ +
Sbjct: 62 TFEAALVNIAAGLDPEKVTLFVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASKQET 121
Query: 153 SPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQ-LLP 211
+GL +YPVLQAADIL+YKA +P G DQ+ +I L + + FN+ F + FP PQ LL
Sbjct: 122 VWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEPQALLN 181
Query: 212 QDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENR 271
A +V + D KMSKS + I + +P E I +K + D +
Sbjct: 182 --PEAPRVPGI-DGKAKMSKSL---GNTIGLLEPEESIWQKIQHLPDD-PQRIRLSDPGD 234
Query: 272 PAVSNLITLHALCTNQ-LPQDICTQVKH--LNTGQYKLLLADVLVEKFKPIRDEIEYLMK 328
P + L T + + L + + + + + T K +L D L+E +PIR+ E L K
Sbjct: 235 PERTILFTYLSYFAPKDLVEALKEEYRKAGVGTYVVKRILFDHLMEALRPIRERAEALKK 294
Query: 329 SKEHLEKVLLDGSIRAQAIAVETWDEVKSA 358
+++ LL+G+ RA+A+A T +EV+
Sbjct: 295 DPDYVMDALLEGAKRARAVAQATMEEVREK 324
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
structure; HET: ADP TRP; 2.15A {Campylobacter jejuni
subsp} PDB: 3m5w_A*
Length = 322
Score = 375 bits (965), Expect = e-129
Identities = 99/326 (30%), Positives = 167/326 (51%), Gaps = 8/326 (2%)
Query: 36 QRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQL 95
R+ +G+QP+G LH+GNYFGA++ Q K + + I + H++T Q + LK+N
Sbjct: 4 MRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQ-MFMFIANYHAMTSSQDGEKLKQNSLK 62
Query: 96 MAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPT 155
AA+ L+ GIDPQKS+ + QS V E +L W+L+ + L +Y +K A+ +
Sbjct: 63 AAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLERAHSYKDKVAKGLSASH 122
Query: 156 GLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDES 215
GLF YPVL AADILL+ +P G DQI ++ +A + NN++ +IF +P+ +E
Sbjct: 123 GLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEV 182
Query: 216 AGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVS 275
A V KMSKS + I+I + + ++ +TD T+ +
Sbjct: 183 A-VVVGT--DGAKMSKSY---QNTIDIFSSEKTLKKQISSIVTDSTALEDPKDHENCNIF 236
Query: 276 NLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEK 335
+ L + Q I + G +K+ L +++ FK R++ L++ HL++
Sbjct: 237 KIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKEAREKYNELLEKPSHLKE 296
Query: 336 VLLDGSIRAQAIAVETWDEVKSAAVG 361
+L G+ +A+ IA E ++ +G
Sbjct: 297 ILDFGATKARKIAQEKMQKIYE-KIG 321
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 359 bits (924), Expect = e-123
Identities = 104/333 (31%), Positives = 172/333 (51%), Gaps = 20/333 (6%)
Query: 36 QRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKH-KDLKENIQ 94
RI SG++PTG LH+G+ GA++ W LQ +G + + + D H++T LKE +
Sbjct: 13 MRILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYTR 72
Query: 95 LMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQ-- 152
+ LACGIDP+KS++F QS V EH +LA + + + +V+RL +PTY E +EL
Sbjct: 73 DLVRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNYKD 132
Query: 153 -SPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLP 211
S G +YPVLQAADIL+YKA +P G DQ+++I L + + FN +D++FP P+
Sbjct: 133 LSTAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEPE--A 190
Query: 212 QDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENR 271
K+ +KMSKS + I + + + + + +TD DP N
Sbjct: 191 ILSRVPKLPGT--DGRKMSKSY---GNIINLEISEKELEQTILRMMTDPARVRRSDPGN- 244
Query: 272 PAVSNLITLHALCTNQLPQDICTQVKH------LNTGQYKLLLADVLVEKFKPIRDEIEY 325
P + H + ++ V + K LL + K PI +
Sbjct: 245 PENCPVWKYHQAFD--ISEEESKWVWEGCTTASIGCVDCKKLLLKNMKRKLAPIWENFRK 302
Query: 326 LMKSKEHLEKVLLDGSIRAQAIAVETWDEVKSA 358
+ + +++ V+++G+ +A+ +A +T +EV+ A
Sbjct: 303 IDEDPHYVDDVIMEGTKKAREVAAKTMEEVRRA 335
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus
radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Length = 351
Score = 358 bits (920), Expect = e-122
Identities = 92/332 (27%), Positives = 147/332 (44%), Gaps = 18/332 (5%)
Query: 36 QRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKH-KDLKENIQ 94
R+ +G +PTG LHLG+ G++Q LQ++ ++ + D+ ++T + ++EN+
Sbjct: 23 PRVLTGDRPTGALHLGHLAGSLQNRVRLQDEA-ELFVLLADVQALTDHFDRPEQVRENVL 81
Query: 95 LMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQS- 153
+A LA G+DPQK+ QS VPE +L L TV+ L PT + A+
Sbjct: 82 AVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGE 141
Query: 154 --PTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLP 211
P G F+YPV QAADI + AT +P G DQ+ + + + FN + + PQ
Sbjct: 142 RVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQ--A 199
Query: 212 QDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENR 271
Q ++ L D KMSKS + I + D + + RK TD DP
Sbjct: 200 QLSRVPRLPGL-DGQAKMSKSL---GNAIALGDSADEVARKVMGMYTDPGHLRASDPGR- 254
Query: 272 PAVSNLITLHALCTNQLPQDICTQVKHLNTGQY-----KLLLADVLVEKFKPIRDEIEYL 326
+ + T P + G K L DVL PIR
Sbjct: 255 VEGNPVFTFLDAFDPD-PARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRAEY 313
Query: 327 MKSKEHLEKVLLDGSIRAQAIAVETWDEVKSA 358
+ + + + + +G+ R + +A +T +V+ A
Sbjct: 314 ERDPDAVLRFVTEGTARGREVAAQTLGQVRRA 345
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding;
HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Length = 348
Score = 257 bits (659), Expect = 4e-83
Identities = 59/319 (18%), Positives = 105/319 (32%), Gaps = 35/319 (10%)
Query: 35 PQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHS---ITIKQKHKDLKE 91
++G +P+G +H+ V + + G +I I D + + + ++E
Sbjct: 40 IFTAYNGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRE 99
Query: 92 NIQLMAASLLACGIDPQKSILFQQSQV----PEHTQLAWVLTCLCTVNRLNHMPTYVEKC 147
+ ACGI+ + S+ P + + + T++R+ + +
Sbjct: 100 LGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRCCQIMGR- 158
Query: 148 AELKQSPTGLFLYPVLQAADILLYKATH---IPAGLDQIHNINLANHLTQLFNNKFDKIF 204
E YP +QAAD+ G+DQ N L + N
Sbjct: 159 NESDCLKASQIFYPCMQAADVFELVPEGIDICQLGIDQ----RKVNMLAIEYANDRGLKI 214
Query: 205 PIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTD----- 259
PI S + SL P KKMSKS D I + D + + K +A
Sbjct: 215 PIS------LSHHMLMSLSGPKKKMSKS--DPQGAIFMDDTEQEVSEKISRAYCTDETFD 266
Query: 260 --CTSAVTYDPENRPAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFK 317
+ Y NL + I +N + K +A+ +
Sbjct: 267 NPIFEYIKYLLLRWFGTLNLCGK----IYTDIESIQEDFSSMNKRELKTDVANYINTIID 322
Query: 318 PIRDEIEYLMKSKEHLEKV 336
+R+ + + E L V
Sbjct: 323 LVREHFKKP-ELSELLSNV 340
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation,
structural genomics; HET: TYR; 2.20A {Pyrococcus
horikoshii}
Length = 375
Score = 250 bits (639), Expect = 8e-80
Identities = 65/342 (19%), Positives = 113/342 (33%), Gaps = 43/342 (12%)
Query: 35 PQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQ 94
P + + G + +G +HLG A + Q G + D HS + DL+ +
Sbjct: 33 PLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQE 92
Query: 95 L--------MAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLC---TVNRLNHMPTY 143
+ M S+ G DP+K S++ E + + T++R+ T
Sbjct: 93 VALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDISKNVTLSRVMRSITI 152
Query: 144 VEKCAELKQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKI 203
+ + + +YP++Q ADI T AG+DQ +A + Q
Sbjct: 153 MGR-QMGEAIDFAKLIYPMMQVADIFYQGVTIAHAGMDQRKAHVIAIEVAQKLRYHPIVH 211
Query: 204 FP------------IPQLLPQDE---SAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEV 248
+ L + + + KMSKS S + I D PE
Sbjct: 212 EGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKS--KPYSAVFIHDSPEE 269
Query: 249 IVRKCKKALTD------------CTSAVTYDPENRPAVSNLITLHALCTNQLPQDICTQV 296
I +K +KA + + V T +++
Sbjct: 270 IRQKLRKAFCPAREVRYNPVLDWVEYIIFREEPTEFTVHRPAKFGGDVTYTTFEELKRDF 329
Query: 297 KH--LNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKV 336
L+ K +A+ L+ +PIR E + E + V
Sbjct: 330 AEGKLHPLDLKNAVAEYLINLLEPIRRYFEKHPEPLELMRSV 371
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, tyrrs, pseudod translation, ATP-binding,
nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania
major} PDB: 3p0i_A* 3p0h_A*
Length = 690
Score = 248 bits (635), Expect = 7e-76
Identities = 73/347 (21%), Positives = 121/347 (34%), Gaps = 47/347 (13%)
Query: 37 RIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKE---NI 93
R + G +P+G +H+ + G + +F + D ++ + +L++
Sbjct: 42 RCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVG 101
Query: 94 QLMAASLLACGIDPQKSI-LFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQ 152
+ + A G+D K + L+ ++ H W + + + R N + + C + +
Sbjct: 102 RYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRM--VLDIGRQNTIARIKKCCTIMGK 159
Query: 153 S----PTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQ 208
+ LYP++Q DI KA GLDQ LA L K +
Sbjct: 160 TEGTLTAAQVLYPLMQCCDIFFLKADICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHH 219
Query: 209 LLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKA-----------L 257
+L LK KMSKSD +S I + D E + RK ++A +
Sbjct: 220 MLA---------GLKQGQAKMSKSDP--DSAIFMEDTEEDVARKIRQAYCPRVKQSASAI 268
Query: 258 TDCTSAVTYDPEN------------RPAVSNLIT-LHALCTNQLPQDICTQVKHLNTGQY 304
TD + V D N RP + I L Q +
Sbjct: 269 TDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTTYATYEDLEQAFVSDEVS--EDAL 326
Query: 305 KLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVLLDGSIRAQAIAVET 351
K L D + +P+R ++ E LE V A ET
Sbjct: 327 KSCLIDEVNALLEPVRQHFASNEEAHELLEAVKSYRKDGATLPLAET 373
Score = 189 bits (482), Expect = 6e-54
Identities = 46/354 (12%), Positives = 105/354 (29%), Gaps = 37/354 (10%)
Query: 1 MIRFKAHLLLTHMKKFVNSSGQQIRHYSDHKISFPQRIFSGIQPTGTLHLGNYFGAVQTW 60
+ + +K + ++ L + V
Sbjct: 349 EEAHELLEAVKSYRKDGATLPLAETALPAAPAKPHACMWMPALLKVPLDVAEGMIKVTKD 408
Query: 61 SALQNKGEDVIFCIVDLHSIT---IKQKHKDLKENIQLMAASLLACGIDPQKSILFQQSQ 117
+ V + D ++ I KD+ +Q+ A L A G+ I+ +
Sbjct: 409 FIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLPSSVKIVTENEV 468
Query: 118 VPEHTQLAWVLTC-LCTVNRLNHMPTYVEKCAELKQSPTGLFLYPVLQAADILLYKATHI 176
+ + WV + N L+H+ E+ + G + +++ A L+ +H+
Sbjct: 469 ILGNCDDFWVSVIGIARKNLLSHV----EELYGGEVRNAGQVIAALMRVATALMLSVSHV 524
Query: 177 PAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDS 236
+ +IN + + + G++ +L P +
Sbjct: 525 ISTSLD-GHINA---FAREYTKERIDCVQT--------LEGRIPALHRPGAAPAVLGA-- 570
Query: 237 NSKIEITDPPEVIVRKCKKALTD-------CTSAVTY--DPENRPAVSNLITLHALCTNQ 287
+ + + D I RK KKA + S + ++ +
Sbjct: 571 DDVLYLDDNDMDIRRKIKKAYSAPNEEANPVISVAQHLLAQHGALSIERGEANGGNVSYN 630
Query: 288 LPQDICTQV--KHLNTGQYKLLLADVLVEKFKPIRD----EIEYLMKSKEHLEK 335
P+ + L+ K + +L+++ R E++ M + EK
Sbjct: 631 TPEALVADCGSGALHPADLKAAVLQLLLDRSAQARALLNGELKKNMTVLRNAEK 684
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
fold, crystallography, X-RAY, P. horikoshii,
aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
horikoshii}
Length = 392
Score = 238 bits (608), Expect = 6e-75
Identities = 58/332 (17%), Positives = 106/332 (31%), Gaps = 29/332 (8%)
Query: 35 PQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHK--DLKEN 92
+++G P+G +H+G+ T + G ++ I D K+ D K
Sbjct: 73 GFFLYTGRGPSGPMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRW 132
Query: 93 IQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQ 152
++A G DP K+ +FQ S+ + ++A + + + + E+
Sbjct: 133 AYDNILDIIAVGFDPDKTFIFQNSEFTKIYEMAIPIAKKINFSMAKAVFGFTEQS----- 187
Query: 153 SPTGLFLYPVLQAADILLYKA-THIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLP 211
G+ +P +Q A + IPA +DQ L + + L
Sbjct: 188 -KIGMIFFPAIQIAPTFFERKRCLIPAAIDQDPYWRLQRDFAESLG------YYKTAALH 240
Query: 212 QDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPEN- 270
+ V SL S KMS S + I +TD PE + +K K +
Sbjct: 241 ----SKFVPSLTSLSGKMSAS--KPETAIYLTDSPEDVEKKVWKFTLTGGRPTLKEQREK 294
Query: 271 --RPAVSNLITLHALCTNQLPQDICTQVKH-----LNTGQYKLLLADVLVEKFKPIRDEI 323
P + + + + + + L G+ K L + E K +
Sbjct: 295 GGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRYLISKIQEFLKEHQRRR 354
Query: 324 EYLMKSKEHLEKVLLDGSIRAQAIAVETWDEV 355
+ K E + E
Sbjct: 355 KKAEKLVEKFKYTGKLAQEMWNEAIPEPLKRS 386
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A
{Plasmodium falciparum}
Length = 373
Score = 234 bits (599), Expect = 7e-74
Identities = 61/325 (18%), Positives = 116/325 (35%), Gaps = 35/325 (10%)
Query: 35 PQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKD---LKE 91
+ G +P+G +H+ + L + G IF I D + + D +K+
Sbjct: 56 KLICYDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKK 115
Query: 92 NIQLMAASLLACGIDPQKS-ILFQQSQVPEHTQLAWVLTCLC----TVNRLNHMPTYVEK 146
+CG++ + L+ ++ + W L +NR+ + +
Sbjct: 116 VGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGR 175
Query: 147 CAELKQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPI 206
+E +++ LYP +Q ADI G+DQ LA + K +
Sbjct: 176 -SEGEENYCSQILYPCMQCADIFFLNVDICQLGIDQRKVNMLAREYCDIKKIKKKPVILS 234
Query: 207 PQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTY 266
+LP L + +KMSKS D NS I + D + RK KKA + +
Sbjct: 235 HGMLP---------GLLEGQEKMSKS--DENSAIFMDDSESDVNRKIKKAYCP-PNVIEN 282
Query: 267 DPENRPAVSNLITLHALCTNQLPQDICTQV--------------KHLNTGQYKLLLADVL 312
+P A S + + + ++ K +A +
Sbjct: 283 NPIYAYAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQELEHDYVNGFIHPLDLKDNVAMYI 342
Query: 313 VEKFKPIRDEIEYLMKSKEHLEKVL 337
+ +P+RD + +++K L ++
Sbjct: 343 NKLLQPVRDHFQNNIEAKNLLNEIK 367
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytic domain, AN recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP:
c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Length = 437
Score = 178 bits (453), Expect = 1e-51
Identities = 55/342 (16%), Positives = 99/342 (28%), Gaps = 34/342 (9%)
Query: 35 PQRIFSGIQPTG-TLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHS-ITIKQKHKDLKEN 92
P +++G P+ +H+G+ + T ++ + D + +
Sbjct: 108 PFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGD 167
Query: 93 IQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQ 152
A ++ACG D K+ +F S + + + + +
Sbjct: 168 AVENAKDIIACGFDINKTFIF--SDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDS 225
Query: 153 SPTGLFLYPVLQAADILLYKATH-----------IPAGLDQIHNINLANHLTQLFNNKFD 201
G +P +QAA IP +DQ + +
Sbjct: 226 DCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIG---- 281
Query: 202 KIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCT 261
+P P LL + +L+ KMS S D NS I +TD + I K K
Sbjct: 282 --YPKPALL----HSTFFPALQGAQTKMSAS--DPNSSIFLTDTAKQIKTKVNKHAFSGG 333
Query: 262 SAVTYDPENRPA-----VSNLITLHALCTNQLPQDICTQVKH--LNTGQYKLLLADVLVE 314
+ VS + L + + I + TG+ K L +VL
Sbjct: 334 RDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQP 393
Query: 315 KFKPIRDEIEYLMKSKEHLEKVLLDGSIRAQAIAVETWDEVK 356
+ + + S Q +A
Sbjct: 394 LIAEHQARRKEVTDEIVKEFMTPRKLSFDFQKLAAALEHHHH 435
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 172 bits (436), Expect = 2e-49
Identities = 62/349 (17%), Positives = 114/349 (32%), Gaps = 45/349 (12%)
Query: 35 PQRIFSGIQPTG-TLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKH--KDLKE 91
P +++G P+ ++HLG+ V T + ++ + D K K D+K
Sbjct: 102 PFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKN 161
Query: 92 NIQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTC--LCTVNRLNHMPTYVEKCAE 149
+ A ++A G DP+ + +F Q V+ T + + + +
Sbjct: 162 FARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSRQITGSTAKAVFGFNDSD-- 219
Query: 150 LKQSPTGLFLYPVLQAADILLY-----------KATHIPAGLDQIHNINLANHLTQLFNN 198
G F + +Q A IP +DQ + +
Sbjct: 220 ----CIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFRVCRDVADKLK- 274
Query: 199 KFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALT 258
+ P LL + +L+ + KMS S D + I +TD P+ I +K K
Sbjct: 275 -----YSKPALLH----SRFFPALQGSTTKMSAS--DDTTAIFMTDTPKQIQKKINKYAF 323
Query: 259 DCTSAVTYDP---ENRPAVSNLITLHA--LCTNQLPQDICTQVKH--LNTGQYKLLLADV 311
P V + + ++ + K L +G+ K L +
Sbjct: 324 SGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEMKKLCIET 383
Query: 312 LVEKFKPIRDEIEYLMKSK----EHLEKVLLDGSIRAQAIAVETWDEVK 356
L E K ++ + + K++ R A +T E K
Sbjct: 384 LQEFVKAFQERRAQVDEETLDKFMVPHKLVWGEKERLVAPKPKTKQEKK 432
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding;
HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Length = 393
Score = 164 bits (417), Expect = 7e-47
Identities = 52/344 (15%), Positives = 115/344 (33%), Gaps = 46/344 (13%)
Query: 35 PQRIFSGIQPTG-TLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKH--KDLKE 91
+++G P+ +LH+G+ + T ++ + D K ++
Sbjct: 74 LFYLYTGRGPSSESLHVGHLVPFLFTKYLQDTFKVPLVIQLTDDEKFIFKSNLTLEETHN 133
Query: 92 NIQLMAASLLACGIDPQKSILFQQSQ-VPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAEL 150
++ACG DP+ + +F + + E + + +++ + + + C
Sbjct: 134 YAYENMKDIIACGFDPELTFIFTNLEYIAELYPDILRIEKKISCSQIKSIFGFKDSC--- 190
Query: 151 KQSPTGLFLYPVLQAADILLYKATH-----------IPAGLDQIHNINLANHLTQLFNNK 199
G F +P +QAA H +P +DQ + +
Sbjct: 191 ---NVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPRLG-- 245
Query: 200 FDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTD 259
+ P + + + SL+ KMS S NS I + D E I K K
Sbjct: 246 ----YLKPSSIH----SIFLPSLQGSQTKMSAS--VQNSSIFVNDNEESIRNKIMKYAFS 295
Query: 260 CTSAVTYDP---ENRPAVSNLITLHA--LCTNQLPQDICTQVKH--LNTGQYKLLLADVL 312
A + V + ++ ++I + + +G+ K +L L
Sbjct: 296 GGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKYSSGEMLSGEIKSILVQEL 355
Query: 313 VEKFKPIRDEIEYLMKSKEHLEKVLLDGSIRAQAIAVETWDEVK 356
V+ K + + + V+ + +++ ++ + K
Sbjct: 356 VKLTKNHQK------NREAINDDVIAKFTNKSREQLLKLFINKK 393
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, LIG nucleotide-binding,
protein biosynthesis; 2.80A {Trypanosoma brucei}
Length = 395
Score = 153 bits (387), Expect = 1e-42
Identities = 49/338 (14%), Positives = 108/338 (31%), Gaps = 45/338 (13%)
Query: 35 PQRIFSGIQPTG-TLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKH-KDLKEN 92
P +++G P+ ++H+G+ + T + ++ + D + + ++
Sbjct: 78 PFYLYTGRGPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAM 137
Query: 93 IQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQ 152
++A G DP+ + +F+ TV ++ T +
Sbjct: 138 TTENIKDIIAMGFDPELTFIFRDFDYMGC--------MYRTVAKIERAFTASQVRGCFGF 189
Query: 153 S---PTGLFLYPVLQAADILLYKATHI------------PAGLDQIHNINLANHLTQLFN 197
+ G +++P +QAA HI P +DQ L +
Sbjct: 190 AMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRDIAPRLG 249
Query: 198 NKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKAL 257
+ P ++ + L P KMS S + + +TD +++ K K
Sbjct: 250 ------YLKPAVIH----SKFFPGLSGPKGKMSSSS---GTAVLLTDTEKMVKDKINKHA 296
Query: 258 TDCTSAVTYDPEN---RPAVSNLITLHA--LCTNQLPQDICTQVKH--LNTGQYKLLLAD 310
A + V I + L ++ + + + TG+ K LL +
Sbjct: 297 FSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYMLGRIMTGEVKKLLIN 356
Query: 311 VLVEKFKPIRDEIEYLMKSKEHLEKVLLDGSIRAQAIA 348
+ K +++ + + L +A
Sbjct: 357 TITAITKTHQEKRKLVTDEDVQLFTSTRIMGPAKKAAT 394
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP:
a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A*
2quk_A
Length = 477
Score = 154 bits (391), Expect = 2e-42
Identities = 55/333 (16%), Positives = 104/333 (31%), Gaps = 38/333 (11%)
Query: 35 PQRIFSGIQPTG-TLHLGNYFGAVQTWSALQNKGE-DVIFCIVDLHS-ITIKQKHKDLKE 91
P +++G P+ +H+G+ + T LQ+ ++ + D +
Sbjct: 155 PFYLYTGRGPSSEAMHVGHLIPFIFTK-WLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYG 213
Query: 92 NIQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELK 151
+ A ++ACG D K+ +F S + + + + +
Sbjct: 214 DAVENAKDIIACGFDINKTFIF--SDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTD 271
Query: 152 QSPTGLFLYPVLQAADILLYKATH-----------IPAGLDQIHNINLANHLTQLFNNKF 200
G +P +QAA IP +DQ + +
Sbjct: 272 SDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIG--- 328
Query: 201 DKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDC 260
+P P LL + +L+ KMS S D NS I +TD + I K K
Sbjct: 329 ---YPKPALLH----STFFPALQGAQTKMSAS--DPNSSIFLTDTAKQIKTKVNKHAFSG 379
Query: 261 TSAVTYDP---ENRPAVSNLITLHA--LCTNQLPQDICTQVKH--LNTGQYKLLLADVLV 313
+ V L + + I + TG+ K L +VL
Sbjct: 380 GRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQ 439
Query: 314 EKFKPIRDEIEYLMKSKEHLEKVLLDGSIRAQA 346
+ + + + E +++ + + A
Sbjct: 440 PLIAEHQARRKEV--TDEIVKEFMTPRKLAAAL 470
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, amino acylation; HET: TRP; 2.60A
{Encephalitozoon cuniculi}
Length = 406
Score = 137 bits (347), Expect = 1e-36
Identities = 47/312 (15%), Positives = 94/312 (30%), Gaps = 36/312 (11%)
Query: 35 PQRIFSGIQPTG-TLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKH-KDLKEN 92
P +++G P+ T+H+G+ + ++ I D K +D
Sbjct: 101 PFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAY 160
Query: 93 IQLMAASLLACGIDPQKSILFQQSQVPEHTQL-AWVLTCLCTVNRLNHMPTYVEKCAELK 151
+ ++ G DP+ + +F + H + ++ +N + +
Sbjct: 161 GRENIKDIVTLGFDPKLTYIFSNVEASHHFEENILKISKTINLNEAIKVFGFDMS----- 215
Query: 152 QSPTGLFLYPVLQAADILLY--------KATHIPAGLDQIHNINLANHLTQLFNNKFDKI 203
S G +P + A +PA +DQ LA + K
Sbjct: 216 -SNIGQVGFPAKEIAPCFSSSFRFIGKGAMCLVPAAVDQDPFFRLARDKAKALGEKK--- 271
Query: 204 FPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSA 263
P + LK ++KMS S D NS I + D + I +K
Sbjct: 272 -------PSSIYVSLLPDLKGVNRKMSAS--DPNSSIYLDDAQDTIRKKIIAYAYSGGRK 322
Query: 264 VTYDPEN---RPAVSNLITLHA--LCTNQLPQDICTQVKH--LNTGQYKLLLADVLVEKF 316
+ V L +Q + + + + + K V+ E
Sbjct: 323 TLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEMKEKCVVVIQEFV 382
Query: 317 KPIRDEIEYLMK 328
++ + +
Sbjct: 383 SRYQESRKRVTD 394
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 136 bits (343), Expect = 2e-36
Identities = 38/304 (12%), Positives = 88/304 (28%), Gaps = 37/304 (12%)
Query: 35 PQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKH-KDLKENI 93
P IF P + L Y VI I+D + ++ + +
Sbjct: 82 PTFIFIQKYPQKEVALEEYITLEFARYLQDAFNIQVIIQILDDIKVLNREATINEASKMS 141
Query: 94 QLMAASLLACGIDPQKSILFQQSQ-VPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQ 152
+ +LA G + K+ ++ Q + + ++ N + +
Sbjct: 142 NDLMKYILAFGFNEDKTFIYTDYQYFGKMYRTISLVEKATAYNVVQPFFNFEYSD----- 196
Query: 153 SPTGLFLYPVLQAADILLYKATH---------IPAGLDQIHNINLANHLTQLFNNKFDKI 203
G P + A + +H + + + ++ + + N
Sbjct: 197 -NIGKLASPSIMTASMFSQSYSHFFSSPARCLVLDSIKNVQFHSIIDQIATTLN------ 249
Query: 204 FPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSA 263
F P +L K+ L K ++ I ++D + + RK K
Sbjct: 250 FIQPTVLF-----HKMVPLLSGVTKFDIP--SDHNSILLSDNAKQVERKINKLAFSGGRN 302
Query: 264 VTYDPENRPAVSNLITLHALCTNQLPQDIC-TQVKH------LNTGQYKLLLADVLVEKF 316
T + + ++ L + V+ L +G+ K +++ + +
Sbjct: 303 TTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKYSKGELLSGELKKIVSASMKDFI 362
Query: 317 KPIR 320
Sbjct: 363 VAYD 366
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex;
HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A
{Saccharomyces cerevisiae}
Length = 394
Score = 97.2 bits (242), Expect = 2e-22
Identities = 60/355 (16%), Positives = 113/355 (31%), Gaps = 54/355 (15%)
Query: 35 PQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKH--KDLKEN 92
+++ G PTG H G + + + G +V + DLH+ K + +
Sbjct: 39 HLKLYWGTAPTGRPHCGYFVPMTKL-ADFLKAGCEVTVLLADLHAFLDNMKAPLEVVNYR 97
Query: 93 ----IQLMAASLLACGIDPQKSILFQQSQV---PEHTQLAWVLTCLCTVNRLNHMPTYVE 145
+ A L + + +K S P++T + L+ + + N +
Sbjct: 98 AKYYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKR--AGAD 155
Query: 146 KCAELKQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFP 205
++ +YP++QA D G+DQ LA K
Sbjct: 156 VVKQVANPLLSGLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLAEENLPSLGYKKRAHLM 215
Query: 206 IPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVT 265
P ++P L KMS S D NSKI++ + P+ + +K A C+
Sbjct: 216 NP-MVP---------GL-AQGGKMSAS--DPNSKIDLLEEPKQVKKKINSAF--CSPGNV 260
Query: 266 YD-PENRPAVSNLITLHALCTNQLPQDICTQVKH----------------------LNTG 302
+ + + L + L+
Sbjct: 261 EENGLLSFVQYVIAPIQELKFGTNHFEFFIDRPEKFGGPITYKSFEEMKLAFKEEKLSPP 320
Query: 303 QYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVLLDGSIRAQAIAVETWDEVKS 357
K+ +AD + E +PIR E + + ++ G A + + K+
Sbjct: 321 DLKIGVADAINELLEPIRQEFA----NNKEFQEASEKGYPVATPQKSKKAKKPKN 371
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi
aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia
lamblia atcc 50803}
Length = 451
Score = 95.6 bits (237), Expect = 1e-21
Identities = 44/277 (15%), Positives = 86/277 (31%), Gaps = 63/277 (22%)
Query: 35 PQRIFSGIQPT-GTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKH--KDLKE 91
P I++G P+ G LHLG+ + T V+ I D + ++
Sbjct: 91 PIYIYTGRGPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDS 150
Query: 92 NIQLMAASLLACGIDPQKSILFQQSQ---VPEHTQLAWVLTCLCTVNRLNHMPTYVEKCA 148
+ ++ACG DP K+ +F SQ + + + ++ + +++L +
Sbjct: 151 YTRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFSN--- 207
Query: 149 ELKQSPTGLFLYPVLQAADILLYKATHIPAG--------LDQIHNINLANHLTQLFNNKF 200
+ G +P Q + +P ++ ++ K
Sbjct: 208 ---DANVGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTPKK 264
Query: 201 DKIFPIPQLLPQD----------------------------ESAGKVK------------ 220
D + ++ + + A ++
Sbjct: 265 DAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFL 324
Query: 221 -SLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKA 256
L+ KMS S D NS I +TD P I K +
Sbjct: 325 PGLQGSGTKMSAS--DPNSAIYLTDTPAQIKNKINRY 359
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 2.20A {Aeropyrum pernix}
Length = 364
Score = 89.8 bits (223), Expect = 5e-20
Identities = 56/336 (16%), Positives = 113/336 (33%), Gaps = 48/336 (14%)
Query: 35 PQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQ 94
+ + G +P+G H+G + + L G D H+ I K + I+
Sbjct: 35 RIKGYIGYEPSGVAHIG-WLVWMYKVKDLVEAGVDFSVLEATWHA-YINDKLGGDMDLIR 92
Query: 95 L----MAASLLACGIDPQKSILFQQ-SQV---PEHTQLAWVLTCLCTVNRLNHMPTYVEK 146
+ + A G+ ++ + F ++ ++ L + ++ R+ T + +
Sbjct: 93 AAARIVRRVMEAAGVPVER-VRFVDAEELASDKDYWGLVIRVAKRASLARVRRALTIMGR 151
Query: 147 CAELKQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPI 206
AE + +YP++Q +DI G+DQ LA + + K
Sbjct: 152 RAEEAEVDASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVAEKLGRKKPVAIHT 211
Query: 207 PQLLPQDESAGKVKSL-----KDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCT 261
P + S KMSKS + + + + D + I RK +KA C
Sbjct: 212 PIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPE--TAVFVVDSDDDIRRKIRKAY--CP 267
Query: 262 SAVTYDPENRPAVSNLITLHALCTNQLPQDICTQVKH--------------------LNT 301
+ + P + + + + K+ L+
Sbjct: 268 AKQV---QGNPVLE-IARYILFARDGFTLRVDRPAKYGGPVEYTSYEELERDYTDGRLHP 323
Query: 302 GQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEKVL 337
K +A+ L+E +PIR + +++ L
Sbjct: 324 LDLKNAVAESLIEVVRPIRGAVL----GDPAMKRAL 355
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 80.4 bits (199), Expect = 6e-17
Identities = 62/312 (19%), Positives = 108/312 (34%), Gaps = 45/312 (14%)
Query: 35 PQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHS-ITIKQKHKDLKENI 93
R + G +P+G +HLG + VQ LQ G ++I + D+H+ + K +++ E
Sbjct: 32 KPRAYVGYEPSGEIHLG-HMMTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVA 90
Query: 94 QLMAASLLACGIDPQKSILFQQSQV---PEHTQLAWVLTCLCTVNRLNHMPTYVEKCAEL 150
+A G+D ++ S+ ++ + + T+NR V + E
Sbjct: 91 DYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRRKE- 149
Query: 151 KQSPTGLFLYPVLQAADILLYKATHIP-AGLDQIHNINLANHLTQLFNNKFDKIFPIPQL 209
+YP++QA DI + G+DQ LA P L
Sbjct: 150 -DPMVSQMIYPLMQALDIAHLGV-DLAVGGIDQRKIHMLARENLPRLGYSSPVCLHTPIL 207
Query: 210 LPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVT---- 265
+ D +KMS S + I + DPPE + RK +KA C + V
Sbjct: 208 VGLDG------------QKMSSSK---GNYISVRDPPEEVERKIRKAY--CPAGVVEENP 250
Query: 266 -------------YDPENRPAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVL 312
+ +L +D + L+ K+ +A L
Sbjct: 251 ILDIAKYHILPRFGKIVVERDAKFGGDVEYASFEELAEDF--KSGQLHPLDLKIAVAKYL 308
Query: 313 VEKFKPIRDEIE 324
+ R +
Sbjct: 309 NMLLEDARKRLG 320
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus
jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A*
1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A
3n2y_A* 2hgz_A*
Length = 314
Score = 79.6 bits (197), Expect = 8e-17
Identities = 63/321 (19%), Positives = 108/321 (33%), Gaps = 59/321 (18%)
Query: 37 RIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQL- 95
+ G +P+G +HLG ++ ++ LQN G D+I + DL + + QK + + I+
Sbjct: 30 SAYIGFEPSGKIHLG-HYLQIKKMIDLQNAGFDIIILLADLAA-YLNQKGE--LDEIRKI 85
Query: 96 ---MAASLLACGIDPQKSILFQQSQV-PEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELK 151
A G+ K + + Q+ ++T + L T+ R + + E
Sbjct: 86 GDYNKKVFEAMGLKA-KYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIAREDE-- 142
Query: 152 QSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQ--- 208
+YP++Q G++Q LA L P
Sbjct: 143 NPKVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKIHMLAREL-----------LPKKVVCI 191
Query: 209 ---LLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSA-- 263
+L L D KMS S + I + D PE I K KKA
Sbjct: 192 HNPVLT---------GL-DGEGKMSSSK---GNFIAVDDSPEEIRAKIKKAYCPAGVVEG 238
Query: 264 ----------VTYDPENRPAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLV 313
+ Y + L +L + K L+ K +A+ L+
Sbjct: 239 NPIMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLF--KNKELHPMYLKNAVAEELI 296
Query: 314 EKFKPIRDEIEYLMKSKEHLE 334
+ +PIR + + H
Sbjct: 297 KILEPIRKRLL---EHHHHHH 314
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique
anticodon recognit domain, dimer, ligase; 1.18A {Homo
sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Length = 372
Score = 76.4 bits (188), Expect = 2e-15
Identities = 60/316 (18%), Positives = 100/316 (31%), Gaps = 47/316 (14%)
Query: 35 PQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHK-DLKEN- 92
+I+ G TG H+ YF + + G +V DLH+ K +L E
Sbjct: 35 ELKIYWGTATTGKPHVA-YFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWELLELR 93
Query: 93 ----IQLMAASLLACGIDPQKSILFQQSQVPEHTQLAW--VLTCLCTVNRLNHMPTYVEK 146
++ A L + G+ +K + + + ++ V V + + E
Sbjct: 94 VSYYENVIKAMLESIGVPLEKLKFIKGTDY-QLSKEYTLDVYRLSSVVTQHDSKKAGAEV 152
Query: 147 CAELKQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPI 206
+++ LYP LQA D K G+DQ A
Sbjct: 153 VKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMN 212
Query: 207 PQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTY 266
P ++P L KMS S+ SKI++ D E + +K KKA C
Sbjct: 213 P-MVP---------GLTG--SKMSSSEE--ESKIDLLDRKEDVKKKLKKAF--CEPGNVE 256
Query: 267 D------------------PENRPAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLL 308
+ R L +D + ++ G K +
Sbjct: 257 NNGVLSFIKHVLFPLKSEFVILRDEK-WGGNKTYTAYVDLEKDFAA--EVVHPGDLKNSV 313
Query: 309 ADVLVEKFKPIRDEIE 324
L + PIR++
Sbjct: 314 EVALNKLLDPIREKFN 329
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 2e-05
Identities = 52/305 (17%), Positives = 95/305 (31%), Gaps = 82/305 (26%)
Query: 32 ISFPQRIFSGIQPTGTLHLGNYFGAVQTW-----------SALQNKGEDVIFCIVDLHSI 80
IS P I G + L +Y + + ++ + +
Sbjct: 236 ISCP-----LI---GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 81 TIKQKHKDLKENIQLMAASLLACGID-----PQKSI---LFQQSQVPEHTQLAWVLTC-- 130
+ + +++ L G+ P S+ + + S + +L+
Sbjct: 288 SWE----SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 131 ------LCTVNRLN-HMPTYVEKCAE--LKQSP-----TGLFLYPV-LQAADILLYKATH 175
VN+ N H+P K E L +G P L ++ L KA
Sbjct: 344 LTQEQVQDYVNKTNSHLPA--GKQVEISLVNGAKNLVVSG---PPQSLYGLNLTLRKA-K 397
Query: 176 IPAGLDQIHNINLANHLTQ---LFNNKFDKIF---------PIPQLLPQDESAGKV---- 219
P+GLDQ I ++ F+N+F + P L+ +D V
Sbjct: 398 APSGLDQ-SRI----PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA 452
Query: 220 KSLKDPSKKMSK-SDLDSNSKIEITDP-PEVIVRKC---KKAL-TDCTSAVTYDPENRPA 273
K ++ P SDL S I++ + I+R + T + + P
Sbjct: 453 KDIQIPVYDTFDGSDLRVLSG-SISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASG 511
Query: 274 VSNLI 278
+ L
Sbjct: 512 LGVLT 516
Score = 43.1 bits (101), Expect = 2e-04
Identities = 55/344 (15%), Positives = 102/344 (29%), Gaps = 129/344 (37%)
Query: 110 SILFQQSQVPEHTQLAWVLTCLCTVNR---LNHMPTYVEKCAELKQ--SPTGLFLYPVLQ 164
+L VP T ++ + L + +P E A + +P L
Sbjct: 19 VLL-----VP--TASFFIASQL----QEQFNKILPEPTEGFAADDEPTTPAELV------ 61
Query: 165 AADILLYKATHI-PAGLDQIHNINLANHLTQLFNNKF---DKIFPIPQLLPQDESAGKVK 220
L Y ++ + P+ + Q + L LT+ F N + + I + L Q+ VK
Sbjct: 62 -GKFLGYVSSLVEPSKVGQFDQV-LNLCLTE-FENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 221 S-------------LKDPSKKMSKSDL-----DSNSKI---------------EI----- 242
+ K P K S S L + N+++ E+
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178
Query: 243 TDPPEV--IVRKCKKALTDCTSAVT-----Y-----------DPENRP--------AVS- 275
T V +++ + L++ + +P N P +S
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 276 NLITLHALCTNQLPQDICT-QVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLE 334
LI + QL + T ++ G+ + L H +
Sbjct: 239 PLIGV-----IQLAHYVVTAKLLGFTPGELRSYLKGATG------------------HSQ 275
Query: 335 KVLLDGSIRAQAIA-VETWDEVKSAAVGGILTAF-----GQGTY 372
++ A AIA ++W+ + I F Y
Sbjct: 276 GLVT-----AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY 314
Score = 40.4 bits (94), Expect = 0.001
Identities = 49/274 (17%), Positives = 85/274 (31%), Gaps = 106/274 (38%)
Query: 204 FPIP--------QLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKK 255
+P QL Q++ K L +P++ + D E T P E++ +
Sbjct: 20 LLVPTASFFIASQL--QEQFN---KILPEPTEGFAADD-------EPTTPAELVGK---- 63
Query: 256 ALTDCTSAVTYDPENRPAVSNLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADV--LV 313
L +S V +P ++ L + Y L D+ L
Sbjct: 64 FLGYVSSLV--EPSKVGQFDQVLNLC--------------LTEFEN-CY-LEGNDIHALA 105
Query: 314 EKFKPIRDEIEYLMKSKEHLEKVLLDGSIRAQAIAVETWDE------VKSAAVG--GILT 365
K D L+K+KE L+ I A+ +A +D+ ++ G ++
Sbjct: 106 AKLLQENDTT--LVKTKE-----LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 366 AF-GQG---TYLGTPEMDGLLLVSYRWADYQ-----------------LTLAFDQVPIWG 404
F GQG Y E+ L + Y + D ++
Sbjct: 159 IFGGQGNTDDYF--EELRDL------YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 405 ----LLKWM---------GYF-----SCPTDGLT 420
+L+W+ Y SCP G+
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI 244
Score = 31.2 bits (70), Expect = 0.94
Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 47/146 (32%)
Query: 9 LLTHMKKFVNSSGQ-QIR-HYSDHKISFPQR---IFSGIQPTGTLHLGNYFGAVQTWSAL 63
L ++K SG Q R +S+ K+ F R + S P H S L
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS---P---FH-----------SHL 431
Query: 64 QNKGEDVIFCIVDLHSITIKQKHKDLK---------ENIQLMAASLLACGIDPQKSILFQ 114
D+I DL + KD++ ++++++ S+ +D I+
Sbjct: 432 LVPASDLI--NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD---CII-- 484
Query: 115 QSQVPEHTQLAWVLTCLCTVNRLNHM 140
++P W T T + H+
Sbjct: 485 --RLPVK----WETT---TQFKATHI 501
Score = 30.8 bits (69), Expect = 0.97
Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 42/114 (36%)
Query: 304 YKLLLADVLVE---KFKPIRDEIEYLMKSK--EHLEKVLLDGSIRAQ-AI-AVE--TWDE 354
Y ++ + +V+ K + I EI S EK LL + Q A+ +E +++
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS-EKGLLSATQFTQPALTLMEKAAFED 1746
Query: 355 VKS---------------------AAVGGILTAFGQGTYLGTPEMDGLLLVSYR 387
+KS A++ +++ E + +V YR
Sbjct: 1747 LKSKGLIPADATFAGHSLGEYAALASLADVMS-I---------E-SLVEVVFYR 1789
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 2e-05
Identities = 73/536 (13%), Positives = 153/536 (28%), Gaps = 181/536 (33%)
Query: 14 KKFVNSSGQQIRHYSDHKISFPQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFC 73
+KFV + + I QR QP+ + Y ++ L N +
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQR-----QPSMMTRM--Y---IEQRDRLYNDNQ----- 124
Query: 74 IVDLHSITIKQKHKDLKENI-QLMAASLLA------CGIDPQKSILFQQSQVPEHTQLA- 125
+ ++++ Q + L++ + +L A + G K+ + + Q
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG----KTWVALDVCLSYKVQCKM 180
Query: 126 -----WV--------------LTCLCT------VNRLNHMPTYVEKCAELKQSPTGLFLY 160
W+ L L +R +H + ++ L
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 161 PVLQAA-DIL--LYKATHIPAGLD------------QIHNINLANHLTQLFNNKFDKIFP 205
+ +L + A A + Q+ + A T + +
Sbjct: 241 KPYENCLLVLLNVQNAKAWNA-FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 206 IPQLL----------PQD--ESAGKV---------KSLKD------PSKKMSKSDLDS-- 236
++ PQD +S++D K ++ L +
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 237 NSKIEITDPPEVIVRKCKKAL------TDCTSAV---------TYDPE------------ 269
S + + +P E RK L + + D
Sbjct: 360 ESSLNVLEPAE--YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 270 NRPAVSNLITLHALCTNQLPQDICTQVKHLNT------GQYKLLLADVLVEKFKPIRDE- 322
+ + I++ ++ L ++ ++++ Y + + P D+
Sbjct: 418 EKQPKESTISIPSI---YL--ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 323 ----IEYLMKSKEHLEK------VLLD-----GSIRAQAIAVETWDEVKSAAVGGILTAF 367
I + +K+ EH E+ V LD IR + A W+ A G IL
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA---WN-----ASGSILNTL 524
Query: 368 GQ-GTYLG-----TPEMDGLL-------------LVSYRWAD-YQLTLAFDQVPIW 403
Q Y P+ + L+ L+ ++ D ++ L + I+
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.073
Identities = 6/23 (26%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 254 KKALTDCTSAVT-YDPENRPAVS 275
K+AL +++ Y ++ PA++
Sbjct: 19 KQALKKLQASLKLYADDSAPALA 41
Score = 28.8 bits (63), Expect = 2.4
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 83 KQKHKDLKENIQLMA---ASLLA 102
KQ K L+ +++L A A LA
Sbjct: 19 KQALKKLQASLKLYADDSAPALA 41
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET:
TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1
d.66.1.4 PDB: 1h3e_A*
Length = 432
Score = 32.0 bits (73), Expect = 0.33
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 14/95 (14%)
Query: 158 FLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAG 217
LYP QA D + +A G DQ N+ + + + + F +P L+ D G
Sbjct: 173 LLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLD---G 229
Query: 218 KVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRK 252
+ +KMSKS ++ I +T+PPE + +K
Sbjct: 230 R--------EKMSKS---LDNYIGLTEPPEAMFKK 253
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases,
HSC70, actin) superfamily, acetate kinase, isobutyrate
kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP:
c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Length = 381
Score = 31.0 bits (71), Expect = 0.73
Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 10/66 (15%)
Query: 313 VEKFKPIRDEIEYLMKSKEHLEKVLLDGSIRAQAIAVETWDEVKSAAVGGILTAFGQGTY 372
+ +F+ I D++E+ ++ + + ++ ++ + GG+L G Y
Sbjct: 37 LGRFQKILDQLEFR---EKIARQFV-----EETGYSLSSFSAF--VSRGGLLDPIPGGVY 86
Query: 373 LGTPEM 378
L M
Sbjct: 87 LVDGLM 92
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase,
structural genomics, unknown function; 1.50A
{Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Length = 298
Score = 29.0 bits (66), Expect = 2.6
Identities = 24/132 (18%), Positives = 41/132 (31%), Gaps = 36/132 (27%)
Query: 44 PTGTLHLGNYFGAVQTW-SALQNKG------EDVIFCIVDLHSITIKQKHKDL----KEN 92
P+G LH G+ A+ ++ A +G ED+ D
Sbjct: 14 PSGELHFGSLIAALGSYLQARARQGRWLVRIEDI-----------------DPPREVPGA 56
Query: 93 IQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLT-------CLCTVNRLNHM-PTYV 144
+ + L G+ +L+Q + + + L C CT R+ + Y
Sbjct: 57 AETILRQLEHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYD 116
Query: 145 EKCAELKQSPTG 156
C L P
Sbjct: 117 GHCRVLHHGPDN 128
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, protein structure initiative, NYSGXRC, PSI;
2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2
d.41.2.2
Length = 449
Score = 29.1 bits (65), Expect = 3.0
Identities = 18/96 (18%), Positives = 27/96 (28%), Gaps = 10/96 (10%)
Query: 289 PQDICTQVKHLNTGQYKLLLADVLVEKFKPIR----DEIEYLMKSKEHLEKVLLDGSIRA 344
++ + L A V + R IE K E K+ D
Sbjct: 281 GGNLLIVLPDAFGTAAFLRNAPEWVADWTGFRPDSAPPIEGGEKIIEWWRKMGRD-PRTK 339
Query: 345 QAIA-----VETWDEVKSAAVGGILTAFGQGTYLGT 375
I V+ + G + +FG GT L
Sbjct: 340 MLIFSDGLDVDAIVDTYRHFEGRVRMSFGWGTNLTN 375
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 27.7 bits (62), Expect = 3.4
Identities = 4/30 (13%), Positives = 8/30 (26%)
Query: 254 KKALTDCTSAVTYDPENRPAVSNLITLHAL 283
+A+ C + Y + L
Sbjct: 55 TQAIQMCQQGLRYTSTAEHVAIRSKLQYRL 84
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein;
1.60A {Pectobacterium atrosepticum}
Length = 108
Score = 27.2 bits (61), Expect = 3.9
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 97 AASLLACGIDPQ---KSILFQQSQVPEHTQLAW 126
A LLA GIDP ++ + +T+L
Sbjct: 71 AKKLLAAGIDPSAKKQADNKTIQEKRNNTRLEH 103
>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A
{Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A
2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A
Length = 320
Score = 28.1 bits (63), Expect = 4.9
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 5/40 (12%)
Query: 55 GAVQTWSALQNKGEDVIFCIVDLHSIT-IKQKHKDLKENI 93
A WS + ++D T + H DL NI
Sbjct: 16 KAPSVWSITDGSVSVIQVAVLD----TGVDYDHPDLAANI 51
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 27.3 bits (61), Expect = 5.2
Identities = 6/25 (24%), Positives = 7/25 (28%)
Query: 252 KCKKALTDCTSAVTYDPENRPAVSN 276
K C A+ ENR
Sbjct: 53 DYNKCRELCEKAIEVGRENREDYRQ 77
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure,
rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus
horikoshii} SCOP: a.97.1.2 c.26.1.1
Length = 523
Score = 28.3 bits (62), Expect = 5.3
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 35 PQRIFSGIQPTGTLHLGNYFGAVQTWS----ALQNKGEDVIF-CIVD 76
+ SGI P+G +H+GN F + T AL++KG +V + D
Sbjct: 21 KYVVESGITPSGYVHVGN-FRELFTAYIVGHALRDKGYEVRHIHMWD 66
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 26.8 bits (60), Expect = 7.6
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 252 KCKKALTDCTSAVTYDPENRPAVSNL 277
+ KA A+ DP N A +
Sbjct: 96 EWSKAQRAYEDALQVDPSNEEAREGV 121
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 27.7 bits (62), Expect = 7.6
Identities = 5/28 (17%), Positives = 14/28 (50%)
Query: 254 KKALTDCTSAVTYDPENRPAVSNLITLH 281
+A+ C+ + +P+N A+ + +
Sbjct: 312 VEAIRVCSEVLQMEPDNVNALKDRAEAY 339
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 26.8 bits (60), Expect = 7.8
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 252 KCKKALTDCTSAVTYDPENRPAVSNL 277
KA+ A+ D + A
Sbjct: 99 DYTKAMDVYQKALDLDSSCKEAADGY 124
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 27.0 bits (60), Expect = 8.8
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 254 KKALTDCTSAVTYDPENRPAVSNLITL 280
+A D + P V+ + +
Sbjct: 114 DEAEEDLKLLLRNHPAAASVVAREMKI 140
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.408
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,403,098
Number of extensions: 377467
Number of successful extensions: 1160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1024
Number of HSP's successfully gapped: 58
Length of query: 422
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 326
Effective length of database: 4,021,377
Effective search space: 1310968902
Effective search space used: 1310968902
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)