RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3680
(422 letters)
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS)
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 326
Score = 263 bits (674), Expect = 3e-86
Identities = 124/323 (38%), Positives = 196/323 (60%), Gaps = 3/323 (0%)
Query: 36 QRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQL 95
+ IFSGIQP+G + +GNY GA++ + LQ++ + FCIVD H+IT+ Q +L++NI+
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEY-NCYFCIVDQHAITVWQDPHELRQNIRR 60
Query: 96 MAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPT 155
+AA LA GIDP ++ LF QS+VP H Q AW+L C+ + L M + EK A +
Sbjct: 61 LAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGKEAVSA 120
Query: 156 GLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQDES 215
GL YP L AADILLY +P G DQ +I L L + FN ++ ++F IP+
Sbjct: 121 GLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVG 180
Query: 216 AGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAVTYDPENRPAVS 275
A ++ SL DP+KKMSKSD + + I + D + I +K K A+TD + YD E +P +S
Sbjct: 181 A-RIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGTIRYDKEAKPGIS 239
Query: 276 NLITLHALCTNQLPQDICTQVKHLNTGQYKLLLADVLVEKFKPIRDEIEYLMKSKEHLEK 335
NL+ +++ + Q +++ Q + G +K LA V++E +PI++ + M+S+E L++
Sbjct: 240 NLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWMESEE-LDR 298
Query: 336 VLLDGSIRAQAIAVETWDEVKSA 358
VL +G+ +A +A E +++ A
Sbjct: 299 VLDEGAEKANRVASEMVRKMEQA 321
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 167 bits (424), Expect = 2e-48
Identities = 54/323 (16%), Positives = 99/323 (30%), Gaps = 36/323 (11%)
Query: 35 PQRIFSGIQPTG-TLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIK-QKHKDLKEN 92
P +++G P+ +H+G+ + T ++ + D K +
Sbjct: 74 PFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGD 133
Query: 93 IQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQ 152
A ++ACG D K+ +F S + + + + +
Sbjct: 134 AVENAKDIIACGFDINKTFIF--SDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDS 191
Query: 153 SPTGLFLYPVLQAADILLYK-----------ATHIPAGLDQIHNINLANHLTQLFNNKFD 201
G +P +QAA IP +DQ + +
Sbjct: 192 DCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIG---- 247
Query: 202 KIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCT 261
+P P LL +L+ KMS S D NS I +TD + I K K
Sbjct: 248 --YPKPALLHST----FFPALQGAQTKMSAS--DPNSSIFLTDTAKQIKTKVNKHAFSGG 299
Query: 262 SAVTYDPENRPA-----VSNLITLHALCTNQLPQDICTQVKH--LNTGQYKLLLADVLVE 314
+ VS + L + + I + TG+ K L +VL
Sbjct: 300 RDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQP 359
Query: 315 KFKPIRDEIEYLMKSKEHLEKVL 337
+ + + E +++ +
Sbjct: 360 LIAEHQARRKEVT--DEIVKEFM 380
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 339
Score = 157 bits (396), Expect = 6e-45
Identities = 52/326 (15%), Positives = 96/326 (29%), Gaps = 40/326 (12%)
Query: 35 PQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKD------ 88
+I+ G TG H+ + + G +V DLH+ K
Sbjct: 32 ELKIYWGTATTGKPHVAYFVPMSKIA-DFLKAGCEVTILFADLHAYLDNMKAPWELLELR 90
Query: 89 LKENIQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCA 148
+ ++ A L + G+ +K + + + + L +V + +
Sbjct: 91 VSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVV 150
Query: 149 ELKQSPT-GLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIP 207
+ + P LYP LQA D K G+DQ A P
Sbjct: 151 KQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNP 210
Query: 208 QLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSA---- 263
S + SKI++ D E + +K KKA + +
Sbjct: 211 M--------------VPGLTGSKMSSSEEESKIDLLDRKEDVKKKLKKAFCEPGNVENNG 256
Query: 264 -------VTYDPENRPAVSNLITLHALCTNQLPQDICTQV--KHLNTGQYKLLLADVLVE 314
V + ++ + T D+ + ++ G K + L +
Sbjct: 257 VLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVEVALNK 316
Query: 315 KFKPIRDEIEYLMKSKEHLEKVLLDG 340
PIR++ L+K+
Sbjct: 317 LLDPIREKFN-----TPALKKLASAA 337
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 306
Score = 109 bits (273), Expect = 1e-27
Identities = 56/301 (18%), Positives = 100/301 (33%), Gaps = 34/301 (11%)
Query: 35 PQRIFSGIQPTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITI-KQKHKDLKENI 93
+ + G +P+G +HLG+Y ++ LQN G D+I + DLH+ K + ++++
Sbjct: 28 EKSAYIGFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIG 86
Query: 94 QLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQ- 152
A G+ + S+ + L L +E A +
Sbjct: 87 DYNKKVFEAMGLKAKY---VYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIAREDEN 143
Query: 153 SPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFPIPQLLPQ 212
+YP++Q DI G++Q LA L P+ L
Sbjct: 144 PKVAEVIYPIMQVNDIHYLGVDVAVGGMEQRKIHMLARE--LLPKKVVCIHNPVLTGLDG 201
Query: 213 DESAGKVKSLKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSA--------V 264
+ + I + D PE I K KKA
Sbjct: 202 EGKMSS----------------SKGNFIAVDDSPEEIRAKIKKAYCPAGVVEGNPIMEIA 245
Query: 265 TYDPENRPAVSNLITLHALCTNQLPQDICTQVKH--LNTGQYKLLLADVLVEKFKPIRDE 322
Y E + T +++ + K+ L+ K +A+ L++ +PIR
Sbjct: 246 KYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMDLKNAVAEELIKILEPIRKR 305
Query: 323 I 323
+
Sbjct: 306 L 306
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus
thermophilus [TaxId: 274]}
Length = 343
Score = 76.2 bits (186), Expect = 7e-16
Identities = 31/185 (16%), Positives = 55/185 (29%), Gaps = 15/185 (8%)
Query: 35 PQRIFSGIQPTGT-LHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKE-- 91
P + G PT LHLG+ + Q G V+ I D + +
Sbjct: 33 PLTVKLGADPTRPDLHLGHAVVLRK-MRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPP 91
Query: 92 -------NIQLMAASLLACGIDPQKSILFQQSQVPEHTQLAW----VLTCLCTVNRLNHM 140
+ + + + + L + LT L TV ++
Sbjct: 92 LTLEETRENAKTYVAQAGKILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLER 151
Query: 141 PTYVEKCAELKQSPTGLFLYPVLQAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKF 200
+ ++ LYP QA D + +A G DQ N+ + + + +
Sbjct: 152 EDFKKRYEAGIPISLHELLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQSP 211
Query: 201 DKIFP 205
F
Sbjct: 212 QVCFL 216
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB
{Escherichia coli [TaxId: 562]}
Length = 286
Score = 33.7 bits (76), Expect = 0.030
Identities = 40/250 (16%), Positives = 64/250 (25%), Gaps = 56/250 (22%)
Query: 44 PTGTLHLGNYFGAVQTW-SALQNKG------ED----------VIFCIVDLHSITIKQKH 86
P+G LH G+ A+ ++ A +G ED + L +
Sbjct: 11 PSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDG 70
Query: 87 KDLKENIQLMAASLLACGIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEK 146
L ++ + A + Q + + + C V V
Sbjct: 71 DVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRI 130
Query: 147 CAELKQSPT-------------------------GLFLYPVLQAADILLYKATHIPAGLD 181
+ + GLF Y + D T I G D
Sbjct: 131 RQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGAD 190
Query: 182 QIHNINLANHLTQLFNNKFDKIFPIPQLLPQDESAGKVKSLKDPSKKMSKSDLDSNSKIE 241
I L QLF K +P L K+SK + +
Sbjct: 191 LIEPTVRQISLYQLFGWKVPDYIHLPLALNPQ------------GAKLSKQNHAPA--LP 236
Query: 242 ITDPPEVIVR 251
DP V++
Sbjct: 237 KGDPRPVLIA 246
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 33.2 bits (74), Expect = 0.053
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 40 SGIQPTGTLHLGNYFGAVQTWS---ALQNKGEDVIF 72
SGI P+G +H+GN+ + AL++KG +V
Sbjct: 24 SGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRH 59
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS)
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 27.9 bits (61), Expect = 2.7
Identities = 29/223 (13%), Positives = 50/223 (22%), Gaps = 42/223 (18%)
Query: 44 PTGTLHLGNYFGAVQTWSALQNKGEDVIFCIVDLHSITIKQKHKDLKENIQLMAASLLAC 103
P G LH+G+ + Q+ D
Sbjct: 28 PNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDD--------------------------- 60
Query: 104 GIDPQKSILFQQSQVPEHTQLAWVLTCLCTVNRLNHMPTYVEKCAELKQSPTGLFLYPVL 163
+P K + + + ++ EL GL L
Sbjct: 61 -TNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELIN--KGLAYVDEL 117
Query: 164 QAADILLYKATHIPAGLDQIHNINLANHLTQLFNNKFDKIFP--IPQLLPQDESAGKVKS 221
I Y+ T G + + LF F L + + A
Sbjct: 118 TPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIV 177
Query: 222 LKDPSKKMSKSDLDSNSKIEITDPPEVIVRKCKKALTDCTSAV 264
++DP K + + C + D T +
Sbjct: 178 MRDPVLYRIKFAEH----------HQTGNKWCIYPMYDFTHCI 210
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 27.7 bits (60), Expect = 2.8
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 4/55 (7%)
Query: 44 PTGTLHLGNYFGAVQTWS---ALQNKGEDVIF-CIVDLHSITIKQKHKDLKENIQ 94
HLG+ + V + G F D H T+ + + E+ +
Sbjct: 14 VNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPK 68
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS)
{Thermus thermophilus [TaxId: 274]}
Length = 305
Score = 27.1 bits (59), Expect = 4.1
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 44 PTGTLHLGNYFGAVQTW-SALQNKGE 68
PTG H+G + A+ + A +N G
Sbjct: 10 PTGDPHVGTAYIALFNYAWARRNGGR 35
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 26.0 bits (56), Expect = 8.9
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 44 PTGTLHLGNYFGAVQTWS---ALQNKGEDVIF-CIVDLHSITIKQKHKDLKENIQ 94
G++HLG+ +Q + +G +V F C D H I K + L +
Sbjct: 13 ANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPE 67
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.408
Gapped
Lambda K H
0.267 0.0413 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,571,456
Number of extensions: 72597
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 13
Length of query: 422
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 334
Effective length of database: 1,199,356
Effective search space: 400584904
Effective search space used: 400584904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)