BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3682
         (218 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
           With Eticlopride
 pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
           With Eticlopride
          Length = 481

 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 2/79 (2%)

Query: 47  EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
           E+KA++++ +V   F++CW PFFL  +L   C T  C +  +L     WLGY +S LNP+
Sbjct: 396 EKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQT--CHVSPELYSATTWLGYVNSALNPV 453

Query: 107 IYTIFNRTFRAAFIRLLKC 125
           IYT FN  FR AF+++L C
Sbjct: 454 IYTTFNIEFRKAFLKILSC 472


>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
           With Doxepin
          Length = 452

 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 3/83 (3%)

Query: 47  EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
           E+KA+K LG +   F+LCW P+F+  ++ A C    C   E L +  +WLGY +S LNP+
Sbjct: 368 ERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNC-CN--EHLHMFTIWLGYINSTLNPL 424

Query: 107 IYTIFNRTFRAAFIRLLKCKCGQ 129
           IY + N  F+  F R+L  + G+
Sbjct: 425 IYPLCNENFKKTFKRILHIRSGE 447


>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
 pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
 pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
 pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
          Length = 479

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 47  EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
           E+KA++ L  +   F++ W P+ ++ ++   C +    IP+    +  WL Y +S +NP+
Sbjct: 369 EKKAAQTLSAILLAFIITWTPYNIMVLVNTFCDS---CIPKTYWNLGYWLCYINSTVNPV 425

Query: 107 IYTIFNRTFRAAFIRLLKCKC 127
            Y + N+TFR  F  LL C+C
Sbjct: 426 CYALCNKTFRTTFKTLLLCQC 446


>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
           Protein Complex
          Length = 514

 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 4/77 (5%)

Query: 47  EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
           E KA K LG++  TF LCW PFF++ I+  I       I +++ I+  W+GY +S  NP+
Sbjct: 417 EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPL 473

Query: 107 IYTIFNRTFRAAFIRLL 123
           IY   +  FR AF  LL
Sbjct: 474 IYC-RSPDFRIAFQELL 489


>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
           Beta2 Adrenoceptor
          Length = 501

 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 4/77 (5%)

Query: 47  EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
           E KA K LG++  TF LCW PFF++ I+  I       I +++ I+  W+GY +S  NP+
Sbjct: 404 EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPL 460

Query: 107 IYTIFNRTFRAAFIRLL 123
           IY   +  FR AF  LL
Sbjct: 461 IYC-RSPDFRIAFQELL 476


>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Partial Agonist Dobutamine (Crystal
           Dob92)
 pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Partial Agonist Dobutamine (Crystal
           Dob92)
 pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Partial Agonist Dobutamine (Crystal
           Dob102)
 pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Partial Agonist Dobutamine (Crystal
           Dob102)
 pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Agonist Carmoterol
 pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Agonist Carmoterol
 pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Agonist Isoprenaline
 pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Agonist Isoprenaline
 pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Partial Agonist Salbutamol
 pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Partial Agonist Salbutamol
 pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Biased Agonist Bucindolol
 pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Biased Agonist Bucindolol
 pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Biased Agonist Carvedilol
 pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Biased Agonist Carvedilol
          Length = 315

 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 4/77 (5%)

Query: 47  EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
           E KA K LG++   F LCW PFFL+ I+          +P+ L +   WLGY +S +NPI
Sbjct: 227 EHKALKTLGIIMGVFTLCWLPFFLVNIVNVF---NRDLVPDWLFVAFNWLGYANSAMNPI 283

Query: 107 IYTIFNRTFRAAFIRLL 123
           IY   +  FR AF RLL
Sbjct: 284 IYC-RSPDFRKAFKRLL 299


>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
           Protein- Coupled Receptor
          Length = 500

 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 4/77 (5%)

Query: 47  EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
           E KA K LG++  TF LCW PFF++ I+  I       I +++ I+  W+GY +S  NP+
Sbjct: 403 EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPL 459

Query: 107 IYTIFNRTFRAAFIRLL 123
           IY   +  FR AF  LL
Sbjct: 460 IYC-RSPDFRIAFQELL 475


>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Cyanopindolol
 pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Cyanopindolol
 pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Cyanopindolol
 pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Cyanopindolol
 pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Antagonist Carazolol
 pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Antagonist Carazolol
 pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Antagonist Cyanopindolol
 pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Antagonist Cyanopindolol
 pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Antagonist Iodocyanopindolol
 pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Antagonist Iodocyanopindolol
 pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Antagonist Cyanopindolol
 pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
           Mutations And Bound Antagonist Cyanopindolol
 pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
           Receptor
 pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
           Receptor
          Length = 313

 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 4/77 (5%)

Query: 47  EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
           E KA K LG++   F LCW PFFL+ I+          +P+ L +   WLGY +S +NPI
Sbjct: 225 EHKALKTLGIIMGVFTLCWLPFFLVNIVNVF---NRDLVPDWLFVAFNWLGYANSAMNPI 281

Query: 107 IYTIFNRTFRAAFIRLL 123
           IY   +  FR AF RLL
Sbjct: 282 IYC-RSPDFRKAFKRLL 297


>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
 pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
           In Complex With The Inverse Agonist Ici 118,551
 pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
           In Complex With A Novel Inverse Agonist
 pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
           In Complex With The Neutral Antagonist Alprenolol
          Length = 490

 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 4/77 (5%)

Query: 47  EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
           E KA K LG++  TF LCW PFF++ I+  I       I +++ I+  W+GY +S  NP+
Sbjct: 404 EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPL 460

Query: 107 IYTIFNRTFRAAFIRLL 123
           IY   +  FR AF  LL
Sbjct: 461 IYC-RSPDFRIAFQELL 476


>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
          Length = 458

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 4/77 (5%)

Query: 47  EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
           E KA K LG++  TF LCW PFF++ I+  I       I +++ I+  W+GY +S  NP+
Sbjct: 372 EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPL 428

Query: 107 IYTIFNRTFRAAFIRLL 123
           IY   +  FR AF  LL
Sbjct: 429 IYC-RSPDFRIAFQELL 444


>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
           Receptor- Fab Complex
          Length = 366

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 4/77 (5%)

Query: 47  EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
           E KA K LG++  TF LCW PFF++ I+  I       I +++ I+  W+GY +S  NP+
Sbjct: 269 EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPL 325

Query: 107 IYTIFNRTFRAAFIRLL 123
           IY   +  FR AF  LL
Sbjct: 326 IYC-RSPDFRIAFQELL 341


>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
          Length = 365

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 4/77 (5%)

Query: 47  EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
           E KA K LG++  TF LCW PFF++ I+  I       I +++ I+  W+GY +S  NP+
Sbjct: 268 EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPL 324

Query: 107 IYTIFNRTFRAAFIRLL 123
           IY   +  FR AF  LL
Sbjct: 325 IYC-RSPDFRIAFQELL 340


>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
          Length = 342

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 4/77 (5%)

Query: 47  EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
           E KA K LG++  TF LCW PFF++ I+  I       I +++ I+  W+GY +S  NP+
Sbjct: 245 EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPL 301

Query: 107 IYTIFNRTFRAAFIRLL 123
           IY   +  FR AF  LL
Sbjct: 302 IYC-RSPDFRIAFQELL 317


>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
           Of A G Protein Coupled Receptor
          Length = 309

 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 4/77 (5%)

Query: 47  EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
           E KA K LG++  TF LCW PFF++ I+  I       I +++ I+  W+GY +S  NP+
Sbjct: 212 EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPL 268

Query: 107 IYTIFNRTFRAAFIRLL 123
           IY   +  FR AF  LL
Sbjct: 269 IYC-RSPDFRIAFQELL 284


>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
           Receptor Bound To An Antagonist
          Length = 467

 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 47  EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 106
           E+K ++ +  +   F++ WAP+ ++ ++   C      IP  +  +  WL Y +S +NP 
Sbjct: 383 EKKVTRTILAILLAFIITWAPYNVMVLINTFCAP---CIPNTVWTIGYWLCYINSTINPA 439

Query: 107 IYTIFNRTFRAAFIRLLKC 125
            Y + N TF+  F  LL C
Sbjct: 440 CYALCNATFKKTFKHLLMC 458


>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
           3.35a
 pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
           2.80a
          Length = 520

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 52  KVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIF 111
           K + +V   F+ CWAP F+L +L   C    C I        L L   +S  NPIIYT+ 
Sbjct: 421 KTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFR-AEYFLVLAVLNSGTNPIIYTLT 479

Query: 112 NRTFRAAFIRLL 123
           N+  R AFIR++
Sbjct: 480 NKEMRRAFIRIM 491


>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
           With Nk1r
 pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
           LIGAND FOR Nk1r
 pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
           LIGAND For Nk1r
          Length = 364

 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 60  TFVLCWAPFFLLQILQAICPTGYCT-IPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAA 118
           TF +CW PF +  +L  I P  Y     + + +  +WL   S++ NPIIY   N  FR  
Sbjct: 256 TFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLG 315

Query: 119 FIRLLKC 125
           F    +C
Sbjct: 316 FKHAFRC 322


>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
           Receptor Bound To Zm241385.
 pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
           Receptor
          Length = 488

 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 42  NSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCT-IPEDLGIVCLWLGYFS 100
           ++++ E  A+K L ++   F LCW P  ++      CP   C+  P  L  + + L + +
Sbjct: 385 STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPD--CSHAPLWLMYLAIVLSHTN 442

Query: 101 SILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIR 135
           S++NP IY    R FR  F ++++    +  +P +
Sbjct: 443 SVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFK 477


>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
           Complex With Zm241385 At 1.8a Resolution
          Length = 447

 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 42  NSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCT-IPEDLGIVCLWLGYFS 100
           ++++ E  A+K L ++   F LCW P  ++      CP   C+  P  L  + + L + +
Sbjct: 344 STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPD--CSHAPLWLMYLAIVLSHTN 401

Query: 101 SILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIR 135
           S++NP IY    R FR  F ++++    +  +P +
Sbjct: 402 SVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFK 436


>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
           Complex With Neurotensin (8-13)
          Length = 510

 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 19/97 (19%)

Query: 43  SVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLW------- 95
           SV+  +    V   V   FV+CW P+ + +++       +C I ++     L+       
Sbjct: 400 SVQALRHGVLVARAVVIAFVVCWLPYHVRRLM-------FCYISDEQWTTFLFDFYHYFY 452

Query: 96  -----LGYFSSILNPIIYTIFNRTFRAAFIRLLKCKC 127
                L Y SS +NPI+Y + +  FR  F+  L C C
Sbjct: 453 MLTNALAYASSAINPILYNLVSANFRQVFLSTLACLC 489


>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
 pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
          Length = 325

 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 15/107 (14%)

Query: 42  NSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFS- 100
           ++++ E  A+K L ++   F LCW P  ++      CP        D     LWL Y + 
Sbjct: 223 STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCP--------DCSHAPLWLMYLAI 274

Query: 101 ------SILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVND 141
                 S++NP IY    R FR  F ++++    +  +P +  +  +
Sbjct: 275 VLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFKAAAAEN 321


>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
           With Jdtic
 pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
           With Jdtic
          Length = 480

 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 30/57 (52%)

Query: 63  LCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAF 119
           +CW P  +  +++A+  T + T        C+ LGY +S LNPI+Y   +  F+  F
Sbjct: 407 VCWTPIHIFILVEALGSTSHSTAALSSYYFCIALGYTNSSLNPILYAFLDENFKRCF 463


>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
           Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
 pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
           Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
          Length = 326

 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 15/101 (14%)

Query: 42  NSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFS- 100
           ++++ E  A+K L ++   F LCW P  ++      CP        D     LWL Y + 
Sbjct: 223 STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCP--------DCSHAPLWLMYLAI 274

Query: 101 ------SILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIR 135
                 S++NP IY    R FR  F ++++    +  +P +
Sbjct: 275 VLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFK 315


>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
          Length = 296

 Score = 39.3 bits (90), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 19/90 (21%)

Query: 47  EQKASKVLGLVFFTFVLCWAPFFLL---------QILQAICP----TGYCTIPEDLGIVC 93
           + +A +V+  V   F+LCW P+ L+         Q++Q  C      G      ++    
Sbjct: 209 KHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEI---- 264

Query: 94  LWLGYFSSILNPIIYTIFNRTFRAAFIRLL 123
             LG+  S LNPIIY    + FR  F+++L
Sbjct: 265 --LGFLHSCLNPIIYAFIGQNFRHGFLKIL 292


>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
           Naltrindole
          Length = 461

 Score = 38.1 bits (87), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 9/71 (12%)

Query: 64  CWAPFFLLQILQAICPTGYCTIPEDLGIV-----CLWLGYFSSILNPIIYTIFNRTFRAA 118
           CWAP  +  I+  +          D  +V     C+ LGY +S LNP++Y   +  F+  
Sbjct: 392 CWAPIHIFVIVWTLVDINR----RDPLVVAALHLCIALGYANSSLNPVLYAFLDENFKRC 447

Query: 119 FIRLLKCKCGQ 129
           F +L +  CG+
Sbjct: 448 FRQLCRTPCGR 458


>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
 pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
           Xac
 pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
           Caffeine
 pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
           6-(2,6-
           Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
 pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
           4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
          Length = 329

 Score = 38.1 bits (87), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 3/95 (3%)

Query: 42  NSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCT-IPEDLGIVCLWLGYFS 100
           ++++ E  A+K   ++   F LCW P  ++      CP   C+  P  L  + + L + +
Sbjct: 223 STLQKEVHAAKSAAIIAGLFALCWLPLHIINCFTFFCPD--CSHAPLWLMYLAIVLAHTN 280

Query: 101 SILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIR 135
           S++NP IY    R FR  F ++++    +  +P +
Sbjct: 281 SVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFK 315


>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
           Morphinan Antagonist
          Length = 464

 Score = 36.6 bits (83), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 27/56 (48%)

Query: 64  CWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAF 119
           CW P  +  I++A+      T        C+ LGY +S LNP++Y   +  F+  F
Sbjct: 395 CWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCF 450


>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
           PEPTIDE Mimetic
 pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
           PEPTIDE Mimetic
          Length = 434

 Score = 35.0 bits (79), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 64  CWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLL 123
           CW P  +  + Q +           +   C  LGY +S LNPI+Y   +  F+A F +  
Sbjct: 349 CWTPVQVFVLAQGLGVQPSSETAVAILRFCTALGYVNSCLNPILYAFLDENFKACFRKF- 407

Query: 124 KCKCGQVTKPIR 135
            C    + +P+ 
Sbjct: 408 -CCASALGRPLE 418


>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
           Expressed In Mammalian Cells
 pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
           Expressed In Mammalian Cells
          Length = 349

 Score = 34.3 bits (77), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 14/87 (16%)

Query: 45  RTEQKASKVLGLVFFTFVLCWAPF----FLLQILQAIC--PTGYCTIPEDLGIVCLWLGY 98
           + E++ ++++ ++   F++CW P+    F +   Q  C  P  + TIP        +   
Sbjct: 246 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPI-FMTIPA-------FFAK 297

Query: 99  FSSILNPIIYTIFNRTFRAAFIRLLKC 125
            S++ NP+IY + N+ FR   +  L C
Sbjct: 298 TSAVYNPVIYIMMNKQFRNCMVTTLCC 324


>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
           Crystal Form
          Length = 348

 Score = 34.3 bits (77), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 14/87 (16%)

Query: 45  RTEQKASKVLGLVFFTFVLCWAPF----FLLQILQAIC--PTGYCTIPEDLGIVCLWLGY 98
           + E++ ++++ ++   F++CW P+    F +   Q  C  P  + TIP        +   
Sbjct: 245 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPI-FMTIPA-------FFAK 296

Query: 99  FSSILNPIIYTIFNRTFRAAFIRLLKC 125
            S++ NP+IY + N+ FR   +  L C
Sbjct: 297 TSAVYNPVIYIMMNKQFRNCMVTTLCC 323


>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
           D282c Rhodopsin Mutant With Bound Galphact Peptide
          Length = 349

 Score = 34.3 bits (77), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 14/87 (16%)

Query: 45  RTEQKASKVLGLVFFTFVLCWAPF----FLLQILQAIC--PTGYCTIPEDLGIVCLWLGY 98
           + E++ ++++ ++   F++CW P+    F +   Q  C  P  + TIP        +   
Sbjct: 246 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPI-FMTIPA-------FFAK 297

Query: 99  FSSILNPIIYTIFNRTFRAAFIRLLKC 125
            S++ NP+IY + N+ FR   +  L C
Sbjct: 298 TSAVYNPVIYIMMNKQFRNCMVTTLCC 324


>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
           Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
           A Peptide Resembling The C-Terminus Of The
           Galpha-Protein Subunit (Gact)
          Length = 349

 Score = 33.5 bits (75), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 14/87 (16%)

Query: 45  RTEQKASKVLGLVFFTFVLCWAPF----FLLQILQAIC--PTGYCTIPEDLGIVCLWLGY 98
           + E++ ++++ +    F++CW P+    F +   Q  C  P  + TIP        +   
Sbjct: 246 KAEKEVTRMVIIYVIAFLICWLPYAGVAFYIFTHQGSCFGPI-FMTIPA-------FFAK 297

Query: 99  FSSILNPIIYTIFNRTFRAAFIRLLKC 125
            S++ NP+IY + N+ FR   +  L C
Sbjct: 298 TSAVYNPVIYIMMNKQFRNCMVTTLCC 324


>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
 pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
 pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
 pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
 pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
 pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
 pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
           Rhodopsin
 pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
           Rhodopsin
 pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
           Rhodopsin
 pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
           Ground-State Rhodopsin
 pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
 pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
 pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
 pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
 pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
 pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
 pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
 pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
 pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
 pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
           Resolution
 pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
           Resolution
 pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
           Resolution
 pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
           Resolution
          Length = 349

 Score = 33.1 bits (74), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 18/89 (20%)

Query: 45  RTEQKASKVLGLVFFTFVLCWAPF----FLLQILQAICPTGYCTIPEDLGIVCLWLGYF- 99
           + E++ ++++ ++   F++CW P+    F +   Q            D G + + +  F 
Sbjct: 246 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQG----------SDFGPIFMTIPAFF 295

Query: 100 ---SSILNPIIYTIFNRTFRAAFIRLLKC 125
              S++ NP+IY + N+ FR   +  L C
Sbjct: 296 AKTSAVYNPVIYIMMNKQFRNCMVTTLCC 324


>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
 pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
 pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
           Receptor Rhodopsin In Its Ligand-Free State
 pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
           Receptor Rhodopsin In Its Ligand-Free State
 pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
           Crystal Form
 pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
 pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
 pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
           Opsin In Complex With A C-terminal Peptide Derived From
           The Galpha Subunit Of Transducin
 pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
           C-Terminal Peptide Derived From The Galpha Subunit Of
           Transducin
 pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
          Length = 348

 Score = 33.1 bits (74), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 18/89 (20%)

Query: 45  RTEQKASKVLGLVFFTFVLCWAPF----FLLQILQAICPTGYCTIPEDLGIVCLWLGYF- 99
           + E++ ++++ ++   F++CW P+    F +   Q            D G + + +  F 
Sbjct: 245 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQG----------SDFGPIFMTIPAFF 294

Query: 100 ---SSILNPIIYTIFNRTFRAAFIRLLKC 125
              S++ NP+IY + N+ FR   +  L C
Sbjct: 295 AKTSAVYNPVIYIMMNKQFRNCMVTTLCC 323


>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
 pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
 pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
           Rhodopsin
 pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
           Rhodopsin
 pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
 pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
          Length = 448

 Score = 30.4 bits (67), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 45  RTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILN 104
             E + +K+  ++   F+L W+P+ ++ +L    P  + T P    +  +     S+I N
Sbjct: 254 NAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVT-PYAAQLPVM-FAKASAIHN 311

Query: 105 PIIYTIFNRTFRAA 118
           P+IY++ +  FR A
Sbjct: 312 PMIYSVSHPKFREA 325


>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
          Length = 372

 Score = 30.4 bits (67), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 45  RTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILN 104
             E + +K+  ++   F+L W+P+ ++ +L    P  + T P    +  +     S+I N
Sbjct: 253 NAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVT-PYAAQLPVM-FAKASAIHN 310

Query: 105 PIIYTIFNRTFRAA 118
           P+IY++ +  FR A
Sbjct: 311 PMIYSVSHPKFREA 324


>pdb|1L5J|A Chain A, Crystal Structure Of E. Coli Aconitase B.
 pdb|1L5J|B Chain B, Crystal Structure Of E. Coli Aconitase B
          Length = 865

 Score = 29.6 bits (65), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 13/54 (24%)

Query: 165 SVSMQDVSHTYPTNTKKQEAGGKGRYKKEVKKRERGELEAVFMNRAEMSSDDVR 218
           +++M DV   YP             YK EV+  E GEL A F  + ++  D+VR
Sbjct: 300 NLNMGDVIDVYP-------------YKGEVRNHETGELLATFELKTDVLIDEVR 340


>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
           Complex With A Small Molecule Antagonist It1t In I222
           Spacegroup
          Length = 508

 Score = 29.6 bits (65), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 21/86 (24%)

Query: 47  EQKASKVLGLVFFTFVLCWAP---------FFLLQILQAICP-----TGYCTIPEDLGIV 92
           ++KA K   ++   F  CW P         F LL+I++  C        + +I E     
Sbjct: 408 KRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEA---- 463

Query: 93  CLWLGYFSSILNPIIYTIFNRTFRAA 118
              L +F   LNPI+Y      F+ +
Sbjct: 464 ---LAFFHCCLNPILYAFLGAKFKTS 486


>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
           Complex With Small Molecule Antagonist It1t
 pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
           Complex With Small Molecule Antagonist It1t
 pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
           Complex With A Small Molecule Antagonist It1t In P1
           Spacegroup
 pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
           Complex With A Small Molecule Antagonist It1t In P1
           Spacegroup
 pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
           Complex With A Small Molecule Antagonist It1t In P1
           Spacegroup
          Length = 502

 Score = 29.6 bits (65), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 21/86 (24%)

Query: 47  EQKASKVLGLVFFTFVLCWAP---------FFLLQILQAICP-----TGYCTIPEDLGIV 92
           ++KA K   ++   F  CW P         F LL+I++  C        + +I E     
Sbjct: 408 KRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEA---- 463

Query: 93  CLWLGYFSSILNPIIYTIFNRTFRAA 118
              L +F   LNPI+Y      F+ +
Sbjct: 464 ---LAFFHCCLNPILYAFLGAKFKTS 486


>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
           Complex With A Cyclic Peptide Antagonist Cvx15
 pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
           Complex With A Small Molecule Antagonist It1t In P1
           Spacegroup
 pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
           Complex With A Small Molecule Antagonist It1t In P1
           Spacegroup
          Length = 499

 Score = 28.5 bits (62), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 21/90 (23%)

Query: 43  SVRTEQKASKVLGLVFFTFVLCWAP---------FFLLQILQAICP-----TGYCTIPED 88
           S   ++KA K   ++   F  CW P         F LL+I++  C        + +I E 
Sbjct: 401 SGHQKRKALKPTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEA 460

Query: 89  LGIVCLWLGYFSSILNPIIYTIFNRTFRAA 118
                  L +F   LNPI+Y      F+ +
Sbjct: 461 -------LAFFHCCLNPILYAFLGAKFKTS 483


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.137    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,067,309
Number of Sequences: 62578
Number of extensions: 160264
Number of successful extensions: 405
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 330
Number of HSP's gapped (non-prelim): 43
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)