RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3682
(218 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 87.4 bits (217), Expect = 5e-21
Identities = 30/85 (35%), Positives = 48/85 (56%)
Query: 24 FKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYC 83
+ ++K R + A S E+KA+K+L +V FVLCW P+ ++ +L ++CP
Sbjct: 167 LRTLRKRARSGASQARAKRSSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCPLSIW 226
Query: 84 TIPEDLGIVCLWLGYFSSILNPIIY 108
+ ++ LWL Y +S LNPIIY
Sbjct: 227 RLLPTALLITLWLAYVNSCLNPIIY 251
>gnl|CDD|220691 pfam10323, 7TM_GPCR_Srv, Serpentine type 7TM GPCR chemoreceptor
Srv. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srv is a member of the
Srg superfamily of chemoreceptors. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 283
Score = 36.8 bits (86), Expect = 0.004
Identities = 31/111 (27%), Positives = 43/111 (38%), Gaps = 21/111 (18%)
Query: 23 LFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPF--FLLQILQAICPT 80
LF I+K + + T + S++ E + L F F+L A + IL
Sbjct: 186 LFFVIRKKF--NKNSQTKSKSLKRE------VRLAFQVFILVLAFLIILIFYILSNYFSQ 237
Query: 81 GYCTIPEDLGIVCLWLGY------FSSILNPIIYTIFNRTFRAAFIRLLKC 125
T D I L Y S I NP + IFNR R ++LKC
Sbjct: 238 ---TQNTDP-IFYLRALYPIASGLLSYI-NPYLLLIFNRDLRKQVRKMLKC 283
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 34.1 bits (78), Expect = 0.040
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 12/106 (11%)
Query: 42 NSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIP--EDLGIVCL----- 94
N +T + +L +V FT V W PF ++ + ++ G I IV
Sbjct: 221 NKNKT-RSIKIILTVVTFTVVF-WVPFNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAE 278
Query: 95 WLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVN 140
+ + +NPIIY + F+ F + C+ + IR S N
Sbjct: 279 LISFVHCCVNPIIYAFVGKNFKKVFKNMF-CRTNNIF--IRQSSNN 321
>gnl|CDD|220690 pfam10321, 7TM_GPCR_Srt, Serpentine type 7TM GPCR chemoreceptor
Srt. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srt is a member of the
Srg superfamily of chemoreceptors. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 313
Score = 32.2 bits (74), Expect = 0.15
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 106 IIYTIFNRTFRAAFIRLLKCKC 127
IIY NRT R ++LL K
Sbjct: 287 IIYLTLNRTIRNGVLKLLGPKK 308
>gnl|CDD|217394 pfam03155, Alg6_Alg8, ALG6, ALG8 glycosyltransferase family.
N-linked (asparagine-linked) glycosylation of proteins
is mediated by a highly conserved pathway in eukaryotes,
in which a lipid (dolichol phosphate)-linked
oligosaccharide is assembled at the endoplasmic
reticulum membrane prior to the transfer of the
oligosaccharide moiety to the target asparagine
residues. This oligosaccharide is composed of
Glc(3)Man(9)GlcNAc(2). The addition of the three glucose
residues is the final series of steps in the synthesis
of the oligosaccharide precursor. Alg6 transfers the
first glucose residue, and Alg8 transfers the second
one. In the human alg6 gene, a C->T transition, which
causes Ala333 to be replaced with Val, has been
identified as the cause of a congenital disorder of
glycosylation, designated as type Ic OMIM:603147.
Length = 463
Score = 31.6 bits (72), Expect = 0.29
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 51 SKVLGLVFFTFVLCWAPFFLL-QILQAI 77
K+ +V TF + + PF L Q+ Q +
Sbjct: 218 LKLALVVVGTFAIIFLPFLYLKQLPQVL 245
>gnl|CDD|219206 pfam06863, DUF1254, Protein of unknown function (DUF1254). This
family represents a conserved region about 130 residues
long within hypothetical proteins of unknown function.
Family members include eukaryotic, bacterial and
archaeal proteins.
Length = 126
Score = 29.5 bits (67), Expect = 0.55
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 146 SSGPATVPLTLPPTPGRTLSVSMQDVSHTYPTNTKKQEAGGKG 188
S GP + +P T GR S+ + D + + GGKG
Sbjct: 34 SDGPVVI--EVPDTGGRYYSLQVLDAWTNTFADLGTRTTGGKG 74
>gnl|CDD|235419 PRK05339, PRK05339, PEP synthetase regulatory protein; Provisional.
Length = 269
Score = 29.3 bits (67), Expect = 1.4
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 25/74 (33%)
Query: 44 VRTEQKASKVL-------GLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWL 96
VRTE+KA +VL +VF+T V P L +IL+ C + GI C+
Sbjct: 42 VRTEEKADEVLEEINAERPIVFYTLVD---P-ELREILEERC--------AEFGIPCI-- 87
Query: 97 GYFSSILNPIIYTI 110
IL P+I +
Sbjct: 88 ----DILGPLIAPL 97
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 29.4 bits (66), Expect = 1.5
Identities = 18/96 (18%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
Query: 38 STAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLG 97
S + +KA K++ ++ FV+ W PF + + ++ + + + + + L
Sbjct: 231 KGINKSKKN-KKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYAL- 288
Query: 98 YFSSIL-------NPIIYTIFNRTFRAAFIRLLKCK 126
+ + I+ NP+IY + F + LK
Sbjct: 289 HVTEIISLSHCCINPLIYAFVSEFFNKHKKKSLKLM 324
>gnl|CDD|177362 PHA02415, PHA02415, DNA primase domain-containing protein.
Length = 930
Score = 29.6 bits (66), Expect = 1.5
Identities = 17/61 (27%), Positives = 25/61 (40%)
Query: 147 SGPATVPLTLPPTPGRTLSVSMQDVSHTYPTNTKKQEAGGKGRYKKEVKKRERGELEAVF 206
+GPA + P GR ++V M+ V K Q G K Y R + + VF
Sbjct: 165 AGPAAAFIVREPADGRVVAVDMRYVDPALNGGVKTQTQGDKAGYGWTADARRLDKAKRVF 224
Query: 207 M 207
+
Sbjct: 225 I 225
>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in
Williams-Beuren syndrome. This domain family is found
in eukaryotes, and is typically between 72 and 83 amino
acids in length. The family is found in association with
pfam08241. This family is made up of
S-adenosylmethionine-dependent methyltransferases. The
proteins are deleted in Williams-Beuren syndrome (WBS),
a complex developmental disorder with multisystemic
manifestations including supravalvular aortic stenosis
(SVAS) and a specific cognitive phenotype.
Length = 85
Score = 26.5 bits (59), Expect = 3.5
Identities = 11/52 (21%), Positives = 20/52 (38%)
Query: 146 SSGPATVPLTLPPTPGRTLSVSMQDVSHTYPTNTKKQEAGGKGRYKKEVKKR 197
++G +VP LP G + + + ++ K + KK KK
Sbjct: 2 TAGGPSVPEQLPNGLGEEGEEDDEQIDASKVRRISQRNRRKKKKKKKLKKKS 53
>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine
transporter; solute-binding domain. TauT is a Na(+)-
and Cl(-)-dependent, high-affinity, low-capacity
transporter of taurine and beta-alanine. Human TauT is
encoded by the SLC6A6 gene. TauT is expressed in brain,
retina, liver, kidney, heart, spleen, and pancreas. It
may play a part in the supply of taurine to the
intestinal epithelium and in the between-meal-capture of
taurine. It may also participate in re-absorbing taurine
that has been deconjugated from bile acids in the distal
lumen. Functional TauT protects kidney cells from
nephrotoxicity caused by the chemotherapeutic agent
cisplatin; cisplatin down-regulates TauT in a
p53-dependent manner. In mice, TauT has been shown to be
important for the maintenance of skeletal muscle
function and total exercise capacity. TauT-/- mice
develop additional clinically important diseases, some
of which are characterized by apoptosis, including
vision loss, olfactory dysfunction, and chronic liver
disease. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 542
Score = 28.3 bits (63), Expect = 4.0
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 57 VFFTFVLCWAPFFLLQILQAICPTGYC 83
+++ +L W ++L Q Q+ P +C
Sbjct: 96 IYYIVILAWGLYYLFQSFQSELPWAHC 122
>gnl|CDD|235151 PRK03699, PRK03699, putative transporter; Provisional.
Length = 394
Score = 28.0 bits (63), Expect = 4.2
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 10/67 (14%)
Query: 51 SKVLGLVFFTFVLCWAP---FFLLQILQAICPTGYCTI---PEDLGIVCLWLGYFSSILN 104
+ ++G+ F+F++ + + A+ P L L LG+FSS
Sbjct: 253 AYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSS--- 309
Query: 105 PIIYTIF 111
IYT
Sbjct: 310 -AIYTTI 315
>gnl|CDD|217642 pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase. This family of
regulatory proteins has ADP-dependent kinase and
inorganic phosphate-dependent pyrophosphorylase
activity.
Length = 255
Score = 27.4 bits (62), Expect = 4.8
Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 40/108 (37%)
Query: 44 VRTEQKASKVL-------GLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWL 96
+RTE+K +VL G+VF+T V L +IL+ E LGI C+
Sbjct: 36 IRTEEKLEEVLEEINEEDGIVFYTLVDP----ELREILEEFA--------EALGIPCV-- 81
Query: 97 GYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQ--VTKPIRYRSVNDR 142
+L P + L+ + G +P R +++
Sbjct: 82 ----DLLGP-------------LLEPLESELGIKPSPEPGRQHGLDED 112
>gnl|CDD|153364 cd07680, F-BAR_PACSIN1, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Protein kinase C and
Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR
domains are dimerization modules that bind and bend
membranes and are found in proteins involved in membrane
dynamics and actin reorganization. Protein kinase C and
Casein kinase Substrate in Neurons (PACSIN) proteins,
also called Synaptic dynamin-associated proteins
(Syndapins), act as regulators of cytoskeletal and
membrane dynamics. Vetebrates harbor three isoforms with
distinct expression patterns and specific functions.
PACSIN 1 or Syndapin I is expressed specifically in the
brain and is localized in neurites and synaptic boutons.
It binds the brain-specific proteins dynamin I,
synaptojanin, synapsin I, and neural Wiskott-Aldrich
syndrome protein (nWASP), and functions as a link
between the cytoskeletal machinery and synaptic vesicle
endocytosis. PACSIN 1 interacts with huntingtin and may
be implicated in the neuropathology of Huntington's
disease. It contains an N-terminal F-BAR domain and a
C-terminal SH3 domain. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long tubules.
Length = 258
Score = 27.3 bits (60), Expect = 5.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 9 RNWHKQAVTSVILGLFKHIKKAQRRTRQA 37
+NW K A I+G FK K+A+ R+A
Sbjct: 96 KNWQKDAYHKQIMGGFKETKEAEDGFRKA 124
>gnl|CDD|153363 cd07679, F-BAR_PACSIN2, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Protein kinase C and
Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR
domains are dimerization modules that bind and bend
membranes and are found in proteins involved in membrane
dynamics and actin reorganization. Protein kinase C and
Casein kinase Substrate in Neurons (PACSIN) proteins,
also called Synaptic dynamin-associated proteins
(Syndapins), act as regulators of cytoskeletal and
membrane dynamics. Vetebrates harbor three isoforms with
distinct expression patterns and specific functions.
PACSIN 2 or Syndapin II is expressed ubiquitously and is
involved in the regulation of tubulin polymerization. It
associates with Golgi membranes and forms a complex with
dynamin II which is crucial in promoting vesicle
formation from the trans-Golgi network. PACSIN 2
contains an N-terminal F-BAR domain and a C-terminal SH3
domain. F-BAR domains form banana-shaped dimers with a
positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 258
Score = 27.3 bits (60), Expect = 6.0
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 9 RNWHKQAVTSVILGLFKHIKKAQRRTRQASTAANSVRTEQKASK 52
+NW K+A ++G FK K+A+ R+A E +A+K
Sbjct: 96 KNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAK 139
>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine
transporter GlyT2; solute-binding domain. GlyT2 (also
called NET1) is a membrane-bound transporter that
re-uptakes glycine from the synaptic cleft. Human GlyT2
is encoded by the SLC6A5 gene. GlyT2 is expressed in
brain and spinal cord. GlyT2 may play a role in pain,
and in spasticity. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 606
Score = 27.6 bits (61), Expect = 6.4
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 53 VLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIP 86
VL +++ ++C+ F+L L + P C P
Sbjct: 91 VLIAIYYNIIMCYTLFYLFASLVEVLPWASCNNP 124
>gnl|CDD|240600 cd12917, VKOR_euk, Vitamin K epoxide reductase family in
eukaryotes, excluding plants. This family includes
vitamin K epoxide reductase (VKOR) present in bacteria
and plant. VKOR (also named VKORC1) is an integral
membrane protein that catalyzes the reduction of vitamin
K 2,3-epoxide and vitamin K to vitamin K hydroquinone,
an essential co-factor subsequently used in the
gamma-carboxylation of glutamic acid residues in blood
coagulation enzymes. All homologs of VKOR contain an
active site CXXC motif, which is switched between
reduced and disulfide-bonded states during the reaction
cycle. Warfarin, a widely used oral anticoagulant used
in medicine as well as rodenticides, inhibits the
activity of VKOR, resulting in decreased levels of
reduced vitamin K, which is required for the function of
several clotting factors. However, anticoagulation
effect of warfarin is significantly associated with
polymorphism of certain genes, including VKORC1.
Interestingly, in rodents, an adaptive trait appears to
have evolved convergently by selection on new or
standing genetic polymorphisms in VKORC1 as well as by
adaptive introgressive hybridization between species,
likely brought about by human-mediated dispersal.
Length = 140
Score = 26.4 bits (59), Expect = 6.8
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 13/56 (23%)
Query: 53 VLGLVFFTFVLC---WAPFFLLQILQAICPTGYCT----------IPEDLGIVCLW 95
V G++F+ L +L + + +D IVC+
Sbjct: 73 VFGIIFYILQLLLGLTNSAVAALLLLTLSILSVVGSLYLAYILYFVLKDFCIVCVS 128
>gnl|CDD|225148 COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain)
[Inorganic ion transport and metabolism].
Length = 451
Score = 27.2 bits (61), Expect = 7.0
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 9/63 (14%)
Query: 14 QAVTSVILGL-FKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQ 72
QA T ++ L I + E +LGLV + P +L
Sbjct: 331 QAATVIVRALALGEISLKNVFRV--------LLKELGVGLLLGLVLAIIIGLRVPAWLYG 382
Query: 73 ILQ 75
L
Sbjct: 383 GLL 385
>gnl|CDD|234998 PRK02098, PRK02098, phosphoribosyl-dephospho-CoA transferase;
Provisional.
Length = 221
Score = 27.0 bits (60), Expect = 7.2
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 142 RATASSGPATVPLT--LPPTPGR---TLSVSMQDVSHTYP 176
R + VPL LPP+ G+ L+ + D++ P
Sbjct: 51 RRSPDEADGRVPLGLPLPPSAGKRRIALAAARDDIARVGP 90
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.135 0.413
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,708,030
Number of extensions: 954062
Number of successful extensions: 1297
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1295
Number of HSP's successfully gapped: 33
Length of query: 218
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 125
Effective length of database: 6,812,680
Effective search space: 851585000
Effective search space used: 851585000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (25.7 bits)