RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3682
(218 letters)
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 118 bits (297), Expect = 2e-31
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 7/132 (5%)
Query: 1 MSVEYCYQRNWHKQAVTSVILGLFKHIKKAQRRT-----RQASTAANSVRTEQKASKVLG 55
S+ Q+ W + AV + +R A E+KA++++
Sbjct: 345 NSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGVPLREKKATQMVA 404
Query: 56 LVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTF 115
+V F++CW PFFL +L C T C + +L WLGY +S LNP+IYT FN F
Sbjct: 405 IVLGAFIVCWLPFFLTHVLNTHCQT--CHVSPELYSATTWLGYVNSALNPVIYTTFNIEF 462
Query: 116 RAAFIRLLKCKC 127
R AF+++L C
Sbjct: 463 RKAFLKILSCGR 474
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 116 bits (291), Expect = 1e-30
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 28 KKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPE 87
RT ++++ E A+K L ++ F LCW P ++ CP P
Sbjct: 371 VITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPD-CSHAPL 429
Query: 88 DLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRAT 144
L + + L + +S++NP IY R FR F ++++ + +P + +
Sbjct: 430 WLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFKAHHHHHHHH 486
Score = 29.3 bits (65), Expect = 0.92
Identities = 25/191 (13%), Positives = 50/191 (26%), Gaps = 21/191 (10%)
Query: 42 NSVRTEQKASKVLGLV-FFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFS 100
N + T +A ++ + +F + P + G V F
Sbjct: 128 NGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVAC---LFE 184
Query: 101 SILNPIIYTIFN-----------------RTFRAAFIRLLKCKCGQVTKPIRYRSVNDRA 143
++ FN R F AA +L + ++ + +R + D
Sbjct: 185 DVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTE 244
Query: 144 TASSGPATVPLTLPPTPGRTLSVSMQDVSHTYPTNTKKQEAGGKGRYKKEVKKRERGELE 203
+ LT P+ S + + K EA + R
Sbjct: 245 GYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNA 304
Query: 204 AVFMNRAEMSS 214
+ + +
Sbjct: 305 KLKPVYDSLDA 315
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 112 bits (281), Expect = 3e-29
Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 8/132 (6%)
Query: 1 MSVEYCYQRNWHKQAVTSVILGLFKHIKKAQRRT-----RQASTAANSVRTEQKASKVLG 55
S+ Q+ W + AV + +R A E+K ++ +
Sbjct: 332 NSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYPPPSREKKVTRTIL 391
Query: 56 LVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTF 115
+ F++ WAP+ ++ ++ C IP + + WL Y +S +NP Y + N TF
Sbjct: 392 AILLAFIITWAPYNVMVLINTFCA---PCIPNTVWTIGYWLCYINSTINPACYALCNATF 448
Query: 116 RAAFIRLLKCKC 127
+ F LL C
Sbjct: 449 KKTFKHLLMCHY 460
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 112 bits (282), Expect = 3e-29
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 4/124 (3%)
Query: 25 KHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCT 84
+ + A E KA K LG++ TF LCW PFF++ I+ I
Sbjct: 381 RAKRVITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQD---NL 437
Query: 85 IPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRAT 144
I +++ I+ W+GY +S NP+IY + FR AF LL + + S N
Sbjct: 438 IRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRRSSLKAYGNGYSSNGNTG 496
Query: 145 ASSG 148
SG
Sbjct: 497 EQSG 500
Score = 28.5 bits (63), Expect = 1.9
Identities = 23/155 (14%), Positives = 53/155 (34%), Gaps = 18/155 (11%)
Query: 42 NSVRTEQKASKVLGLV-FFTFVLCWAPFFL-------LQILQAICPTGYCTIPEDLGIVC 93
S+ T+ KA ++ +V + + + P + + + C +
Sbjct: 149 QSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAI 208
Query: 94 LWLGYFSSILN-----PIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRATASSG 148
SSI++ I+ +++R F+ A +L + ++ + +R + D +
Sbjct: 209 -----ASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYKDTEGYYTI 263
Query: 149 PATVPLTLPPTPGRTLSVSMQDVSHTYPTNTKKQE 183
LT P+ S + + K E
Sbjct: 264 GIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDE 298
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 111 bits (279), Expect = 4e-29
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 45 RTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILN 104
+ E A+K L ++ F LCW P ++ CP P L + + L + +S++N
Sbjct: 347 QKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC-SHAPLWLMYLAIVLSHTNSVVN 405
Query: 105 PIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRS 138
P IY R FR F ++++ + +P +
Sbjct: 406 PFIYAYRIREFRQTFRKIIRSHVLRQQEPFKAHH 439
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 111 bits (279), Expect = 4e-29
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 28 KKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPE 87
+ A + E+KA+K LG + F+LCW P+F+ ++ A C E
Sbjct: 349 RVITTFRTGTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCK---NCCNE 405
Query: 88 DLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQ 129
L + +WLGY +S LNP+IY + N F+ F R+L + G+
Sbjct: 406 HLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRILHIRSGE 447
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 107 bits (268), Expect = 3e-27
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 4/125 (3%)
Query: 24 FKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYC 83
+++ R ++ E KA K LG++ TF LCW PFF++ I+ I
Sbjct: 394 LSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQD---N 450
Query: 84 TIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRA 143
I +++ I+ W+GY +S NP+IY + FR AF LL + + S N
Sbjct: 451 LIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRRSSLKAYGNGYSSNGNT 509
Query: 144 TASSG 148
SG
Sbjct: 510 GEQSG 514
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 106 bits (266), Expect = 4e-27
Identities = 31/124 (25%), Positives = 45/124 (36%), Gaps = 1/124 (0%)
Query: 4 EYCYQRNWHKQAVTSVILGLFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVL 63
+ ++ RT A+ K + +V F+
Sbjct: 373 RWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYASRSSENVALLKTVIIVLSVFIA 432
Query: 64 CWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLL 123
CWAP F+L +L C C I L L +S NPIIYT+ N+ R AFIR++
Sbjct: 433 CWAPLFILLLLDVGCKVKTCDILF-RAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIM 491
Query: 124 KCKC 127
Sbjct: 492 GRPL 495
Score = 33.7 bits (76), Expect = 0.044
Identities = 21/177 (11%), Positives = 48/177 (27%), Gaps = 5/177 (2%)
Query: 43 SVRTEQKASKVLGLV-FFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSS 101
+ + ++ + +L P + A+ + F+
Sbjct: 171 NGSNNFRLFLLISACWVISLILGGLPIMGWNCISALSSCSTVLPLYHKHYILFCTTVFTL 230
Query: 102 ILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRATASSGPATVPLTLPPTPG 161
+L I+ + + ++ + T + L +P
Sbjct: 231 LLLSIVILYCRIYSLVRTRNIFEMLRIDEGLRLKIY----KDTEGYYTIGIGHLLTKSPS 286
Query: 162 RTLSVSMQDVSHTYPTNTKKQEAGGKGRYKKEVKKRERGELEAVFMNRAEMSSDDVR 218
+ S D + TN + + + ++V RG L + S D VR
Sbjct: 287 LNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVR 343
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 102 bits (256), Expect = 2e-26
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 11/118 (9%)
Query: 17 TSVILGLFKHI-KKAQRRTR------QASTAANSVRTEQKASKVLGLVFFTFVLCWAPFF 69
+++ + + ++A+ + R + T+ + E KA K LG++ F LCW PFF
Sbjct: 190 LLIMIFVALRVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFF 249
Query: 70 LLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKC 127
L+ I+ +P+ L + WLGY +S +NPIIY + FR AF RLL
Sbjct: 250 LVNIVNVFNR---DLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAFPR 303
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 83.7 bits (207), Expect = 5e-19
Identities = 24/117 (20%), Positives = 45/117 (38%)
Query: 32 RRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGI 91
R R S + R ++ ++++ +V FV CW P + + Q + +
Sbjct: 317 RGVRLLSGSREKDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSSETAVAILR 376
Query: 92 VCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRATASSG 148
C LGY +S LNPI+Y + F+A F + + ++ +
Sbjct: 377 FCTALGYVNSCLNPILYAFLDENFKACFRKFCCASALGRPLEVLFQGPHHHHHHHHH 433
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 82.4 bits (204), Expect = 8e-19
Identities = 29/141 (20%), Positives = 54/141 (38%), Gaps = 1/141 (0%)
Query: 25 KHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCT 84
+ ++ + V ++K K++ +V TF +CW PF + +L I P Y
Sbjct: 221 ITLWASEIPGDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLK 280
Query: 85 -IPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRA 143
+ + + +WL S++ NPIIY N FR F +C +
Sbjct: 281 KFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCPFISAGDYEGLEMKSTR 340
Query: 144 TASSGPATVPLTLPPTPGRTL 164
+ + ++ T T+
Sbjct: 341 YLQTQGSVYKVSRLETTISTV 361
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 82.3 bits (203), Expect = 2e-18
Identities = 25/181 (13%), Positives = 58/181 (32%), Gaps = 6/181 (3%)
Query: 5 YCYQRNWHKQAVTSVILGLFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLC 64
+CY +V++ + K+ + + + E + +K+ ++ F+L
Sbjct: 218 FCYFNIV--MSVSNHEKEMAAMAKRLNAKELRKA--QAGANAEMRLAKISIVIVSQFLLS 273
Query: 65 WAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLK 124
W+P+ ++ +L P + + + S+I NP+IY++ + FR A +
Sbjct: 274 WSPYAVVALLAQFGPL--EWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFP 331
Query: 125 CKCGQVTKPIRYRSVNDRATASSGPATVPLTLPPTPGRTLSVSMQDVSHTYPTNTKKQEA 184
+ + A P + M +
Sbjct: 332 WVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQ 391
Query: 185 G 185
G
Sbjct: 392 G 392
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 76.3 bits (188), Expect = 1e-16
Identities = 23/128 (17%), Positives = 55/128 (42%), Gaps = 5/128 (3%)
Query: 23 LFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGY 82
L +K+A + +++ A + + E++ ++++ ++ F++CW P+ +
Sbjct: 227 LVFTVKEAAAQQQES---ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSD 283
Query: 83 CTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDR 142
+ + S++ NP+IY + N+ FR + L C + +V+
Sbjct: 284 --FGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKT 341
Query: 143 ATASSGPA 150
T+ PA
Sbjct: 342 ETSQVAPA 349
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 75.8 bits (186), Expect = 3e-16
Identities = 22/103 (21%), Positives = 43/103 (41%)
Query: 31 QRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLG 90
A R ++ ++++ +V F++CW P + I++A+ T
Sbjct: 362 TTFRTGTWDAYEKDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSW 421
Query: 91 IVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKP 133
C+ LGY +S LNP++Y + F+ F + +P
Sbjct: 422 HFCIALGYTNSCLNPVLYAFLDENFKRCFREFCIPTSSTIEQP 464
Score = 33.0 bits (75), Expect = 0.064
Identities = 14/131 (10%), Positives = 36/131 (27%), Gaps = 4/131 (3%)
Query: 43 SVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSI 102
SVR + ++ + ++ + I + + ++ + +G +
Sbjct: 210 SVRNIFEMLRIDEGLRLKIYKNTEGYYTIGIGHLLTKSP--SLNAAKSELDKAIG--RNT 265
Query: 103 LNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRATASSGPATVPLTLPPTPGR 162
I + F ++ Y S++ A+ + G
Sbjct: 266 NGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGF 325
Query: 163 TLSVSMQDVSH 173
T S+ M
Sbjct: 326 TNSLRMLQQKR 336
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 62.2 bits (151), Expect = 1e-11
Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 13/137 (9%)
Query: 2 SVEYCYQRNWHKQAVTSV-ILGLFKHIKKAQR-----RTRQASTAANSVRTEQKASKVLG 55
S+ Q+ W + AV + +A+R RT + ++KA K
Sbjct: 357 SLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTV 416
Query: 56 LVFFTFVLCWAPFFLLQILQAICPTGY----CTIPEDLGI---VCLWLGYFSSILNPIIY 108
++ F CW P+++ + + C + + L +F LNPI+Y
Sbjct: 417 ILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILY 476
Query: 109 TIFNRTFRAAFIRLLKC 125
F+ + L
Sbjct: 477 AFLGAKFKTSAQHALTS 493
Score = 34.1 bits (78), Expect = 0.028
Identities = 8/101 (7%), Positives = 29/101 (28%), Gaps = 17/101 (16%)
Query: 37 ASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWL 96
S ++S + ++ + ++ + I + + ++ + +
Sbjct: 233 ISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKS--PSLNAAKSELDKAI 290
Query: 97 GY--------------FSSILNPIIYTI-FNRTFRAAFIRL 122
G F+ ++ + I N + + L
Sbjct: 291 GRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSL 331
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.001
Identities = 36/208 (17%), Positives = 71/208 (34%), Gaps = 51/208 (24%)
Query: 1 MSVEYCYQRN--------WHKQAVTSVILGLFKHIKKAQRRTRQA-------------ST 39
M+ Y QR+ + K V+ L + +++A R A +
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSR--LQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 40 -AANSVRTEQKASKVLGLVF-FTFVLCWAPFFLLQILQAIC----------PTGYCTIPE 87
A + + + K+ +F C +P +L++LQ + I
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 88 DLGIVCLWL-------GYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVN 140
+ + L Y + +L ++ + N AF L CK T R++ V
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLL--VLLNVQNAKAWNAF--NLSCKILLTT---RFKQVT 278
Query: 141 DRATASSG--PATVPLTLPPTPGRTLSV 166
D +A++ + ++ TP S+
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSL 306
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1,
membrane protein, signaling protein; NMR {Homo sapiens}
Length = 40
Score = 26.2 bits (57), Expect = 1.3
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 93 CLWLGYFSSILNPIIYTIFNRTFRAAFIRLL 123
L +S +NPIIY + ++ R AF +
Sbjct: 6 ASMLCLLNSTVNPIIYALRSKDLRHAFRSMF 36
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 28.5 bits (63), Expect = 1.4
Identities = 1/66 (1%), Positives = 11/66 (16%), Gaps = 1/66 (1%)
Query: 141 DRATASSGPATVPLTLPPTPGRTLSVSMQDV-SHTYPTNTKKQEAGGKGRYKKEVKKRER 199
+ + + + + + + R +
Sbjct: 63 PVPSLAGFHKVQTKLTRELEKKFQDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVH 122
Query: 200 GELEAV 205
++
Sbjct: 123 DKILED 128
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 3.4
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 9/26 (34%)
Query: 191 KKEVKKRERGELEAVFMNRAEMSSDD 216
K+ +KK L+A ++ +DD
Sbjct: 19 KQALKK-----LQA----SLKLYADD 35
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor,
membrane protein; NMR {Synthetic}
Length = 33
Score = 24.6 bits (53), Expect = 4.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 49 KASKVLGLVFFTFVLCWAPFFLLQI 73
+ +K LGLV ++CW P L
Sbjct: 3 RLAKTLGLVLAVLLICWFPVLALMA 27
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter
baumannii} PDB: 2xkk_A*
Length = 767
Score = 27.3 bits (61), Expect = 4.8
Identities = 13/61 (21%), Positives = 24/61 (39%)
Query: 157 PPTPGRTLSVSMQDVSHTYPTNTKKQEAGGKGRYKKEVKKRERGELEAVFMNRAEMSSDD 216
P PG+ Q + + AGG + ++ + + +N E+SSD+
Sbjct: 27 PALPGKLADCVGQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDE 86
Query: 217 V 217
V
Sbjct: 87 V 87
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.7 bits (58), Expect = 5.1
Identities = 6/33 (18%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 180 KKQEAGGKGRYKKEVKKRERGELEAVFMNRAEM 212
++ +A K ++E +++ + +LE ++E
Sbjct: 99 QELDAASK-VMEQEWREKAKKDLEEWNQRQSEQ 130
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 5.4
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 8/61 (13%)
Query: 163 TLSVSMQDVSHTYPTNTKKQEAGGKGR-----YKK---EVKKRERGELEAVFMNRAEMSS 214
T S+ D+ P N G KG+ Y E + + E +F E S+
Sbjct: 1656 TYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHST 1715
Query: 215 D 215
Sbjct: 1716 S 1716
>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20,
GCNA, hydro; 1.40A {Streptococcus gordonii} PDB: 2epk_X
2epm_X 2epn_A* 2epo_A
Length = 627
Score = 26.5 bits (58), Expect = 8.7
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 186 GKGRYKKEVKKRERGELEAVFMNRAE 211
G GRY + + R L + R
Sbjct: 229 GLGRYLIKHGFQNRSLLMCQHLERVL 254
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase
paralog, translation, lysyl- synthetase, lysyladenylate
analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A*
3g1z_A*
Length = 345
Score = 26.4 bits (59), Expect = 8.8
Identities = 4/21 (19%), Positives = 11/21 (52%)
Query: 187 KGRYKKEVKKRERGELEAVFM 207
+ R++++ +KR L +
Sbjct: 279 QQRFEQDNRKRAARGLPQHPI 299
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.135 0.413
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,175,106
Number of extensions: 171403
Number of successful extensions: 381
Number of sequences better than 10.0: 1
Number of HSP's gapped: 365
Number of HSP's successfully gapped: 31
Length of query: 218
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 128
Effective length of database: 4,188,903
Effective search space: 536179584
Effective search space used: 536179584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.4 bits)