RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3682
         (218 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 86.6 bits (213), Expect = 9e-21
 Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 24  FKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYC 83
            + +   +    Q   +A + + E++ ++++ ++   F++CW P+  +            
Sbjct: 224 GQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQG--S 281

Query: 84  TIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRA 143
                   +  +    S++ NP+IY + N+ FR   +  L C    +       +V+   
Sbjct: 282 DFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTE 341

Query: 144 TASSGPA 150
           T+   PA
Sbjct: 342 TSQVAPA 348


>d1u89a1 a.216.1.1 (A:752-889) Talin 1 {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 138

 Score = 27.2 bits (60), Expect = 1.0
 Identities = 8/41 (19%), Positives = 15/41 (36%)

Query: 14 QAVTSVILGLFKHIKKAQRRTRQASTAANSVRTEQKASKVL 54
           AVT  +  L +H+K        A     +  T    ++ +
Sbjct: 21 TAVTQALNELLQHVKAHATGAGPAGRYDQATDTILTVTENI 61


>d2incc1 d.15.12.1 (C:3-85) Toluene, o-xylene monooxygenase
           oxygenase subunit TouB {Pseudomonas stutzeri [TaxId:
           316]}
          Length = 83

 Score = 24.4 bits (53), Expect = 5.4
 Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 13/57 (22%)

Query: 129 QVTKPIRYRSVNDRATASSGPATVPLTLPPTPGRTLSVSMQDVSHTYPTNTKKQEAG 185
           QV +   Y S+N R             + P P + L V   +    +P      +AG
Sbjct: 27  QVAEKCAYHSINRR-------------VHPQPEKILRVRRHEDGTLFPRGMIVSDAG 70


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 778,145
Number of extensions: 33408
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 4
Length of query: 218
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,281,736
Effective search space: 174316096
Effective search space used: 174316096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.9 bits)