BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3683
(221 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 61 EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 120
E+KA++++ +V F++CW PFFL +L C T C + +L WLGY +S LNP+
Sbjct: 396 EKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQT--CHVSPELYSATTWLGYVNSALNPV 453
Query: 121 IYTIFNRTFRAAFIRLLKC 139
IYT FN FR AF+++L C
Sbjct: 454 IYTTFNIEFRKAFLKILSC 472
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 61 EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 120
E+KA+K LG + F+LCW P+F+ ++ A C C E L + +WLGY +S LNP+
Sbjct: 368 ERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNC-CN--EHLHMFTIWLGYINSTLNPL 424
Query: 121 IYTIFNRTFRAAFIRLLKCKCGQ 143
IY + N F+ F R+L + G+
Sbjct: 425 IYPLCNENFKKTFKRILHIRSGE 447
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 61 EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 120
E+KA++ L + F++ W P+ ++ ++ C + IP+ + WL Y +S +NP+
Sbjct: 369 EKKAAQTLSAILLAFIITWTPYNIMVLVNTFCDS---CIPKTYWNLGYWLCYINSTVNPV 425
Query: 121 IYTIFNRTFRAAFIRLLKCKC 141
Y + N+TFR F LL C+C
Sbjct: 426 CYALCNKTFRTTFKTLLLCQC 446
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 61 EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 120
E KA K LG++ TF LCW PFF++ I+ I I +++ I+ W+GY +S NP+
Sbjct: 417 EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPL 473
Query: 121 IYTIFNRTFRAAFIRLL 137
IY + FR AF LL
Sbjct: 474 IYC-RSPDFRIAFQELL 489
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 61 EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 120
E KA K LG++ TF LCW PFF++ I+ I I +++ I+ W+GY +S NP+
Sbjct: 404 EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPL 460
Query: 121 IYTIFNRTFRAAFIRLL 137
IY + FR AF LL
Sbjct: 461 IYC-RSPDFRIAFQELL 476
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 61 EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 120
E KA K LG++ TF LCW PFF++ I+ I I +++ I+ W+GY +S NP+
Sbjct: 403 EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPL 459
Query: 121 IYTIFNRTFRAAFIRLL 137
IY + FR AF LL
Sbjct: 460 IYC-RSPDFRIAFQELL 475
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 61 EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 120
E KA K LG++ TF LCW PFF++ I+ I I +++ I+ W+GY +S NP+
Sbjct: 404 EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPL 460
Query: 121 IYTIFNRTFRAAFIRLL 137
IY + FR AF LL
Sbjct: 461 IYC-RSPDFRIAFQELL 476
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 61 EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 120
E KA K LG++ TF LCW PFF++ I+ I I +++ I+ W+GY +S NP+
Sbjct: 268 EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPL 324
Query: 121 IYTIFNRTFRAAFIRLL 137
IY + FR AF LL
Sbjct: 325 IYC-RSPDFRIAFQELL 340
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 61 EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 120
E KA K LG++ TF LCW PFF++ I+ I I +++ I+ W+GY +S NP+
Sbjct: 269 EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPL 325
Query: 121 IYTIFNRTFRAAFIRLL 137
IY + FR AF LL
Sbjct: 326 IYC-RSPDFRIAFQELL 341
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 61 EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 120
E KA K LG++ F LCW PFFL+ I+ +P+ L + WLGY +S +NPI
Sbjct: 227 EHKALKTLGIIMGVFTLCWLPFFLVNIVNVF---NRDLVPDWLFVAFNWLGYANSAMNPI 283
Query: 121 IYTIFNRTFRAAFIRLL 137
IY + FR AF RLL
Sbjct: 284 IYC-RSPDFRKAFKRLL 299
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 61 EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 120
E KA K LG++ TF LCW PFF++ I+ I I +++ I+ W+GY +S NP+
Sbjct: 372 EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPL 428
Query: 121 IYTIFNRTFRAAFIRLL 137
IY + FR AF LL
Sbjct: 429 IYC-RSPDFRIAFQELL 444
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 61 EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 120
E KA K LG++ F LCW PFFL+ I+ +P+ L + WLGY +S +NPI
Sbjct: 225 EHKALKTLGIIMGVFTLCWLPFFLVNIVNVF---NRDLVPDWLFVAFNWLGYANSAMNPI 281
Query: 121 IYTIFNRTFRAAFIRLL 137
IY + FR AF RLL
Sbjct: 282 IYC-RSPDFRKAFKRLL 297
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 61 EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 120
E KA K LG++ TF LCW PFF++ I+ I I +++ I+ W+GY +S NP+
Sbjct: 245 EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPL 301
Query: 121 IYTIFNRTFRAAFIRLL 137
IY + FR AF LL
Sbjct: 302 IYC-RSPDFRIAFQELL 317
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 61 EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 120
E KA K LG++ TF LCW PFF++ I+ I I +++ I+ W+GY +S NP+
Sbjct: 212 EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPL 268
Query: 121 IYTIFNRTFRAAFIRLL 137
IY + FR AF LL
Sbjct: 269 IYC-RSPDFRIAFQELL 284
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 61 EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 120
E+K ++ + + F++ WAP+ ++ ++ C IP + + WL Y +S +NP
Sbjct: 383 EKKVTRTILAILLAFIITWAPYNVMVLINTFCAP---CIPNTVWTIGYWLCYINSTINPA 439
Query: 121 IYTIFNRTFRAAFIRLLKC 139
Y + N TF+ F LL C
Sbjct: 440 CYALCNATFKKTFKHLLMC 458
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 66 KVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIF 125
K + +V F+ CWAP F+L +L C C I L L +S NPIIYT+
Sbjct: 421 KTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFR-AEYFLVLAVLNSGTNPIIYTLT 479
Query: 126 NRTFRAAFIRLL 137
N+ R AFIR++
Sbjct: 480 NKEMRRAFIRIM 491
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 74 TFVLCWAPFFLLQILQAICPTGYCT-IPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAA 132
TF +CW PF + +L I P Y + + + +WL S++ NPIIY N FR
Sbjct: 256 TFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLG 315
Query: 133 FIRLLKC 139
F +C
Sbjct: 316 FKHAFRC 322
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 56 NSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCT-IPEDLGIVCLWLGYFS 114
++++ E A+K L ++ F LCW P ++ CP C+ P L + + L + +
Sbjct: 385 STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPD--CSHAPLWLMYLAIVLSHTN 442
Query: 115 SILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIR 149
S++NP IY R FR F ++++ + +P +
Sbjct: 443 SVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFK 477
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 19/97 (19%)
Query: 57 SVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLW------- 109
SV+ + V V FV+CW P+ + +++ +C I ++ L+
Sbjct: 400 SVQALRHGVLVARAVVIAFVVCWLPYHVRRLM-------FCYISDEQWTTFLFDFYHYFY 452
Query: 110 -----LGYFSSILNPIIYTIFNRTFRAAFIRLLKCKC 141
L Y SS +NPI+Y + + FR F+ L C C
Sbjct: 453 MLTNALAYASSAINPILYNLVSANFRQVFLSTLACLC 489
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 56 NSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCT-IPEDLGIVCLWLGYFS 114
++++ E A+K L ++ F LCW P ++ CP C+ P L + + L + +
Sbjct: 344 STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPD--CSHAPLWLMYLAIVLSHTN 401
Query: 115 SILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIR 149
S++NP IY R FR F ++++ + +P +
Sbjct: 402 SVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFK 436
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 77 LCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAF 133
+CW P + +++A+ T + T C+ LGY +S LNPI+Y + F+ F
Sbjct: 407 VCWTPIHIFILVEALGSTSHSTAALSSYYFCIALGYTNSSLNPILYAFLDENFKRCF 463
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 56 NSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCT-IPEDLGIVCLWLGYFS 114
++++ E A+K L ++ F LCW P ++ CP C+ P L + + L + +
Sbjct: 223 STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPD--CSHAPLWLMYLAIVLSHTN 280
Query: 115 SILNPIIYTIFNRTFRAAFIRLLK 138
S++NP IY R FR F ++++
Sbjct: 281 SVVNPFIYAYRIREFRQTFRKIIR 304
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 56 NSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCT-IPEDLGIVCLWLGYFS 114
++++ E A+K L ++ F LCW P ++ CP C+ P L + + L + +
Sbjct: 223 STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPD--CSHAPLWLMYLAIVLSHTN 280
Query: 115 SILNPIIYTIFNRTFRAAFIRLLK 138
S++NP IY R FR F ++++
Sbjct: 281 SVVNPFIYAYRIREFRQTFRKIIR 304
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 19/90 (21%)
Query: 61 EQKASKVLGLVFFTFVLCWAPFFLL---------QILQAICP----TGYCTIPEDLGIVC 107
+ +A +V+ V F+LCW P+ L+ Q++Q C G ++
Sbjct: 209 KHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEI---- 264
Query: 108 LWLGYFSSILNPIIYTIFNRTFRAAFIRLL 137
LG+ S LNPIIY + FR F+++L
Sbjct: 265 --LGFLHSCLNPIIYAFIGQNFRHGFLKIL 292
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 78 CWAPFFLLQILQAICPTGYCTIPEDLGIV-----CLWLGYFSSILNPIIYTIFNRTFRAA 132
CWAP + I+ + D +V C+ LGY +S LNP++Y + F+
Sbjct: 392 CWAPIHIFVIVWTLVDIN----RRDPLVVAALHLCIALGYANSSLNPVLYAFLDENFKRC 447
Query: 133 FIRLLKCKCGQ 143
F +L + CG+
Sbjct: 448 FRQLCRTPCGR 458
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 56 NSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCT-IPEDLGIVCLWLGYFS 114
++++ E A+K ++ F LCW P ++ CP C+ P L + + L + +
Sbjct: 223 STLQKEVHAAKSAAIIAGLFALCWLPLHIINCFTFFCPD--CSHAPLWLMYLAIVLAHTN 280
Query: 115 SILNPIIYTIFNRTFRAAFIRLLK 138
S++NP IY R FR F ++++
Sbjct: 281 SVVNPFIYAYRIREFRQTFRKIIR 304
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 78 CWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAF 133
CW P + I++A+ T C+ LGY +S LNP++Y + F+ F
Sbjct: 395 CWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCF 450
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 78 CWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAF 133
CW P + + Q + + C LGY +S LNPI+Y + F+A F
Sbjct: 349 CWTPVQVFVLAQGLGVQPSSETAVAILRFCTALGYVNSCLNPILYAFLDENFKACF 404
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 34.3 bits (77), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 14/87 (16%)
Query: 59 RTEQKASKVLGLVFFTFVLCWAPF----FLLQILQAIC--PTGYCTIPEDLGIVCLWLGY 112
+ E++ ++++ ++ F++CW P+ F + Q C P + TIP +
Sbjct: 246 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPI-FMTIPA-------FFAK 297
Query: 113 FSSILNPIIYTIFNRTFRAAFIRLLKC 139
S++ NP+IY + N+ FR + L C
Sbjct: 298 TSAVYNPVIYIMMNKQFRNCMVTTLCC 324
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 34.3 bits (77), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 14/87 (16%)
Query: 59 RTEQKASKVLGLVFFTFVLCWAPF----FLLQILQAIC--PTGYCTIPEDLGIVCLWLGY 112
+ E++ ++++ ++ F++CW P+ F + Q C P + TIP +
Sbjct: 245 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPI-FMTIPA-------FFAK 296
Query: 113 FSSILNPIIYTIFNRTFRAAFIRLLKC 139
S++ NP+IY + N+ FR + L C
Sbjct: 297 TSAVYNPVIYIMMNKQFRNCMVTTLCC 323
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 14/87 (16%)
Query: 59 RTEQKASKVLGLVFFTFVLCWAPF----FLLQILQAIC--PTGYCTIPEDLGIVCLWLGY 112
+ E++ ++++ ++ F++CW P+ F + Q C P + TIP +
Sbjct: 246 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPI-FMTIPA-------FFAK 297
Query: 113 FSSILNPIIYTIFNRTFRAAFIRLLKC 139
S++ NP+IY + N+ FR + L C
Sbjct: 298 TSAVYNPVIYIMMNKQFRNCMVTTLCC 324
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 59 RTEQKASKVLGLVFFTFVLCWAPF----FLLQILQAIC--PTGYCTIPEDLGIVCLWLGY 112
+ E++ ++++ + F++CW P+ F + Q C P + TIP +
Sbjct: 246 KAEKEVTRMVIIYVIAFLICWLPYAGVAFYIFTHQGSCFGPI-FMTIPA-------FFAK 297
Query: 113 FSSILNPIIYTIFNRTFRAAFIRLLKC 139
S++ NP+IY + N+ FR + L C
Sbjct: 298 TSAVYNPVIYIMMNKQFRNCMVTTLCC 324
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 59 RTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYF----S 114
+ E++ ++++ ++ F++CW P+ + + D G + + + F S
Sbjct: 246 KAEKEVTRMVIIMVIAFLICWLPY------AGVAFYIFTHQGSDFGPIFMTIPAFFAKTS 299
Query: 115 SILNPIIYTIFNRTFRAAFIRLLKC 139
++ NP+IY + N+ FR + L C
Sbjct: 300 AVYNPVIYIMMNKQFRNCMVTTLCC 324
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 59 RTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYF----S 114
+ E++ ++++ ++ F++CW P+ + + D G + + + F S
Sbjct: 245 KAEKEVTRMVIIMVIAFLICWLPY------AGVAFYIFTHQGSDFGPIFMTIPAFFAKTS 298
Query: 115 SILNPIIYTIFNRTFRAAFIRLLKC 139
++ NP+IY + N+ FR + L C
Sbjct: 299 AVYNPVIYIMMNKQFRNCMVTTLCC 323
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 21/86 (24%)
Query: 61 EQKASKVLGLVFFTFVLCWAP---------FFLLQILQAICP-----TGYCTIPEDLGIV 106
++KA K ++ F CW P F LL+I++ C + +I E
Sbjct: 408 KRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEA---- 463
Query: 107 CLWLGYFSSILNPIIYTIFNRTFRAA 132
L +F LNPI+Y F+ +
Sbjct: 464 ---LAFFHCCLNPILYAFLGAKFKTS 486
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 21/86 (24%)
Query: 61 EQKASKVLGLVFFTFVLCWAP---------FFLLQILQAICP-----TGYCTIPEDLGIV 106
++KA K ++ F CW P F LL+I++ C + +I E
Sbjct: 408 KRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEA---- 463
Query: 107 CLWLGYFSSILNPIIYTIFNRTFRAA 132
L +F LNPI+Y F+ +
Sbjct: 464 ---LAFFHCCLNPILYAFLGAKFKTS 486
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 60 TEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNP 119
E + +K+ ++ F+L W+P+ ++ +L P + T P + + S+I NP
Sbjct: 255 AEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVT-PYAAQLPVM-FAKASAIHNP 312
Query: 120 IIYTIFNRTFRAA 132
+IY++ + FR A
Sbjct: 313 MIYSVSHPKFREA 325
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 60 TEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNP 119
E + +K+ ++ F+L W+P+ ++ +L P + T P + + S+I NP
Sbjct: 254 AEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVT-PYAAQLPVM-FAKASAIHNP 311
Query: 120 IIYTIFNRTFRAA 132
+IY++ + FR A
Sbjct: 312 MIYSVSHPKFREA 324
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 21/86 (24%)
Query: 61 EQKASKVLGLVFFTFVLCWAP---------FFLLQILQAICP-----TGYCTIPEDLGIV 106
++KA K ++ F CW P F LL+I++ C + +I E
Sbjct: 405 KRKALKPTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEA---- 460
Query: 107 CLWLGYFSSILNPIIYTIFNRTFRAA 132
L +F LNPI+Y F+ +
Sbjct: 461 ---LAFFHCCLNPILYAFLGAKFKTS 483
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,453,653
Number of Sequences: 62578
Number of extensions: 170007
Number of successful extensions: 352
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 277
Number of HSP's gapped (non-prelim): 43
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)