RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3683
(221 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 90.1 bits (224), Expect = 6e-22
Identities = 30/87 (34%), Positives = 49/87 (56%)
Query: 36 RLFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTG 95
+ + ++K R + A S E+KA+K+L +V FVLCW P+ ++ +L ++CP
Sbjct: 165 LILRTLRKRARSGASQARAKRSSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCPLS 224
Query: 96 YCTIPEDLGIVCLWLGYFSSILNPIIY 122
+ ++ LWL Y +S LNPIIY
Sbjct: 225 IWRLLPTALLITLWLAYVNSCLNPIIY 251
>gnl|CDD|220691 pfam10323, 7TM_GPCR_Srv, Serpentine type 7TM GPCR chemoreceptor
Srv. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srv is a member of the
Srg superfamily of chemoreceptors. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 283
Score = 37.6 bits (88), Expect = 0.003
Identities = 31/111 (27%), Positives = 43/111 (38%), Gaps = 21/111 (18%)
Query: 37 LFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPF--FLLQILQAICPT 94
LF I+K + + T + S++ E + L F F+L A + IL
Sbjct: 186 LFFVIRKKF--NKNSQTKSKSLKRE------VRLAFQVFILVLAFLIILIFYILSNYFSQ 237
Query: 95 GYCTIPEDLGIVCLWLGY------FSSILNPIIYTIFNRTFRAAFIRLLKC 139
T D I L Y S I NP + IFNR R ++LKC
Sbjct: 238 ---TQNTDP-IFYLRALYPIASGLLSYI-NPYLLLIFNRDLRKQVRKMLKC 283
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 34.9 bits (80), Expect = 0.026
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 12/106 (11%)
Query: 56 NSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIP--EDLGIVCL----- 108
N +T + +L +V FT V W PF ++ + ++ G I IV
Sbjct: 221 NKNKT-RSIKIILTVVTFTVVF-WVPFNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAE 278
Query: 109 WLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVN 154
+ + +NPIIY + F+ F + C+ + IR S N
Sbjct: 279 LISFVHCCVNPIIYAFVGKNFKKVFKNMF-CRTNNIF--IRQSSNN 321
>gnl|CDD|220690 pfam10321, 7TM_GPCR_Srt, Serpentine type 7TM GPCR chemoreceptor
Srt. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srt is a member of the
Srg superfamily of chemoreceptors. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 313
Score = 32.2 bits (74), Expect = 0.15
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 120 IIYTIFNRTFRAAFIRLLKCKC 141
IIY NRT R ++LL K
Sbjct: 287 IIYLTLNRTIRNGVLKLLGPKK 308
>gnl|CDD|217394 pfam03155, Alg6_Alg8, ALG6, ALG8 glycosyltransferase family.
N-linked (asparagine-linked) glycosylation of proteins
is mediated by a highly conserved pathway in eukaryotes,
in which a lipid (dolichol phosphate)-linked
oligosaccharide is assembled at the endoplasmic
reticulum membrane prior to the transfer of the
oligosaccharide moiety to the target asparagine
residues. This oligosaccharide is composed of
Glc(3)Man(9)GlcNAc(2). The addition of the three glucose
residues is the final series of steps in the synthesis
of the oligosaccharide precursor. Alg6 transfers the
first glucose residue, and Alg8 transfers the second
one. In the human alg6 gene, a C->T transition, which
causes Ala333 to be replaced with Val, has been
identified as the cause of a congenital disorder of
glycosylation, designated as type Ic OMIM:603147.
Length = 463
Score = 31.6 bits (72), Expect = 0.34
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 65 SKVLGLVFFTFVLCWAPFFLL-QILQAI 91
K+ +V TF + + PF L Q+ Q +
Sbjct: 218 LKLALVVVGTFAIIFLPFLYLKQLPQVL 245
>gnl|CDD|219206 pfam06863, DUF1254, Protein of unknown function (DUF1254). This
family represents a conserved region about 130 residues
long within hypothetical proteins of unknown function.
Family members include eukaryotic, bacterial and
archaeal proteins.
Length = 126
Score = 29.1 bits (66), Expect = 0.74
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 160 SSGPATVPLTLPPTPGRTLSVSMQDVSHTYPTNTKKQEAGGKG 202
S GP + +P T GR S+ + D + + GGKG
Sbjct: 34 SDGPVVI--EVPDTGGRYYSLQVLDAWTNTFADLGTRTTGGKG 74
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 29.7 bits (67), Expect = 0.97
Identities = 18/96 (18%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
Query: 52 STAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLG 111
S + +KA K++ ++ FV+ W PF + + ++ + + + + + L
Sbjct: 231 KGINKSKKN-KKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYAL- 288
Query: 112 YFSSIL-------NPIIYTIFNRTFRAAFIRLLKCK 140
+ + I+ NP+IY + F + LK
Sbjct: 289 HVTEIISLSHCCINPLIYAFVSEFFNKHKKKSLKLM 324
>gnl|CDD|235419 PRK05339, PRK05339, PEP synthetase regulatory protein; Provisional.
Length = 269
Score = 29.3 bits (67), Expect = 1.3
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 25/74 (33%)
Query: 58 VRTEQKASKVL-------GLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWL 110
VRTE+KA +VL +VF+T V P L +IL+ C + GI C+
Sbjct: 42 VRTEEKADEVLEEINAERPIVFYTLVD---P-ELREILEERC--------AEFGIPCI-- 87
Query: 111 GYFSSILNPIIYTI 124
IL P+I +
Sbjct: 88 ----DILGPLIAPL 97
>gnl|CDD|177362 PHA02415, PHA02415, DNA primase domain-containing protein.
Length = 930
Score = 29.2 bits (65), Expect = 1.9
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 161 SGPATVPLTLPPTPGRTLSVSMQDVSHTYPTNTKKQEAGGKGRY 204
+GPA + P GR ++V M+ V K Q G K Y
Sbjct: 165 AGPAAAFIVREPADGRVVAVDMRYVDPALNGGVKTQTQGDKAGY 208
>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine
transporter; solute-binding domain. TauT is a Na(+)-
and Cl(-)-dependent, high-affinity, low-capacity
transporter of taurine and beta-alanine. Human TauT is
encoded by the SLC6A6 gene. TauT is expressed in brain,
retina, liver, kidney, heart, spleen, and pancreas. It
may play a part in the supply of taurine to the
intestinal epithelium and in the between-meal-capture of
taurine. It may also participate in re-absorbing taurine
that has been deconjugated from bile acids in the distal
lumen. Functional TauT protects kidney cells from
nephrotoxicity caused by the chemotherapeutic agent
cisplatin; cisplatin down-regulates TauT in a
p53-dependent manner. In mice, TauT has been shown to be
important for the maintenance of skeletal muscle
function and total exercise capacity. TauT-/- mice
develop additional clinically important diseases, some
of which are characterized by apoptosis, including
vision loss, olfactory dysfunction, and chronic liver
disease. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 542
Score = 28.3 bits (63), Expect = 3.6
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 71 VFFTFVLCWAPFFLLQILQAICPTGYC 97
+++ +L W ++L Q Q+ P +C
Sbjct: 96 IYYIVILAWGLYYLFQSFQSELPWAHC 122
>gnl|CDD|240600 cd12917, VKOR_euk, Vitamin K epoxide reductase family in
eukaryotes, excluding plants. This family includes
vitamin K epoxide reductase (VKOR) present in bacteria
and plant. VKOR (also named VKORC1) is an integral
membrane protein that catalyzes the reduction of vitamin
K 2,3-epoxide and vitamin K to vitamin K hydroquinone,
an essential co-factor subsequently used in the
gamma-carboxylation of glutamic acid residues in blood
coagulation enzymes. All homologs of VKOR contain an
active site CXXC motif, which is switched between
reduced and disulfide-bonded states during the reaction
cycle. Warfarin, a widely used oral anticoagulant used
in medicine as well as rodenticides, inhibits the
activity of VKOR, resulting in decreased levels of
reduced vitamin K, which is required for the function of
several clotting factors. However, anticoagulation
effect of warfarin is significantly associated with
polymorphism of certain genes, including VKORC1.
Interestingly, in rodents, an adaptive trait appears to
have evolved convergently by selection on new or
standing genetic polymorphisms in VKORC1 as well as by
adaptive introgressive hybridization between species,
likely brought about by human-mediated dispersal.
Length = 140
Score = 27.6 bits (62), Expect = 3.7
Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 17/68 (25%)
Query: 67 VLGLVFFTFVLC---WAPFFLLQILQAICPTGYCT----------IPEDLGIVCLWLGYF 113
V G++F+ L +L + + +D IVC+
Sbjct: 73 VFGIIFYILQLLLGLTNSAVAALLLLTLSILSVVGSLYLAYILYFVLKDFCIVCVS---- 128
Query: 114 SSILNPII 121
+ ++N ++
Sbjct: 129 TYVVNFLL 136
>gnl|CDD|217642 pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase. This family of
regulatory proteins has ADP-dependent kinase and
inorganic phosphate-dependent pyrophosphorylase
activity.
Length = 255
Score = 27.8 bits (63), Expect = 3.8
Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 40/108 (37%)
Query: 58 VRTEQKASKVL-------GLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWL 110
+RTE+K +VL G+VF+T V L +IL+ E LGI C+
Sbjct: 36 IRTEEKLEEVLEEINEEDGIVFYTLVDP----ELREILEEFA--------EALGIPCV-- 81
Query: 111 GYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQ--VTKPIRYRSVNDR 156
+L P + L+ + G +P R +++
Sbjct: 82 ----DLLGP-------------LLEPLESELGIKPSPEPGRQHGLDED 112
>gnl|CDD|149215 pfam08006, DUF1700, Protein of unknown function (DUF1700). This
family contains many hypothetical bacterial proteins and
two putative membrane proteins.
Length = 181
Score = 27.2 bits (61), Expect = 6.0
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 22/98 (22%)
Query: 33 NPHRLFKHIKKAQRRTRQASTAANSVRTEQKA-SKVLGLVFFTFVLCWAPFFLLQILQAI 91
NP + K +K A +A SV+ +A VLGL F F++ PF +L +L
Sbjct: 52 NPKTIAKELK-ADYAIDKAEKK-PSVKNIFRAILAVLGLGLFNFIIILIPFIILILL--- 106
Query: 92 CPTGYCTIPEDLGIVCLWLGYFSSILNP---IIYTIFN 126
++ LW+ +L+P ++ IF
Sbjct: 107 -------------VLSLWIIGLVLLLSPLILLVKGIFG 131
>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine
transporter GlyT2; solute-binding domain. GlyT2 (also
called NET1) is a membrane-bound transporter that
re-uptakes glycine from the synaptic cleft. Human GlyT2
is encoded by the SLC6A5 gene. GlyT2 is expressed in
brain and spinal cord. GlyT2 may play a role in pain,
and in spasticity. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 606
Score = 27.6 bits (61), Expect = 6.8
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 67 VLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIP 100
VL +++ ++C+ F+L L + P C P
Sbjct: 91 VLIAIYYNIIMCYTLFYLFASLVEVLPWASCNNP 124
>gnl|CDD|234998 PRK02098, PRK02098, phosphoribosyl-dephospho-CoA transferase;
Provisional.
Length = 221
Score = 26.6 bits (59), Expect = 8.7
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 156 RATASSGPATVPLT--LPPTPGR---TLSVSMQDVSHTYP 190
R + VPL LPP+ G+ L+ + D++ P
Sbjct: 51 RRSPDEADGRVPLGLPLPPSAGKRRIALAAARDDIARVGP 90
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.136 0.416
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,986,892
Number of extensions: 974790
Number of successful extensions: 992
Number of sequences better than 10.0: 1
Number of HSP's gapped: 990
Number of HSP's successfully gapped: 30
Length of query: 221
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 128
Effective length of database: 6,812,680
Effective search space: 872023040
Effective search space used: 872023040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.7 bits)