RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3683
(221 letters)
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 119 bits (300), Expect = 7e-32
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
Query: 10 VPFMTKFVPGRESPPPSGYKASANPHRLFKHIKKAQRRTRQAST----AANSVRTEQKAS 65
F ++ A + +A+R T A E+KA+
Sbjct: 341 AGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGVPLREKKAT 400
Query: 66 KVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIF 125
+++ +V F++CW PFFL +L C T C + +L WLGY +S LNP+IYT F
Sbjct: 401 QMVAIVLGAFIVCWLPFFLTHVLNTHCQT--CHVSPELYSATTWLGYVNSALNPVIYTTF 458
Query: 126 NRTFRAAFIRLLKCKC 141
N FR AF+++L C
Sbjct: 459 NIEFRKAFLKILSCGR 474
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 116 bits (292), Expect = 9e-31
Identities = 28/141 (19%), Positives = 52/141 (36%), Gaps = 1/141 (0%)
Query: 18 PGRESPPPSGYKASANPHRLFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVL 77
E+ N RT ++++ E A+K L ++ F L
Sbjct: 347 RWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFAL 406
Query: 78 CWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLL 137
CW P ++ CP P L + + L + +S++NP IY R FR F +++
Sbjct: 407 CWLPLHIINCFTFFCPD-CSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKII 465
Query: 138 KCKCGQVTKPIRYRSVNDRAT 158
+ + +P + +
Sbjct: 466 RSHVLRQQEPFKAHHHHHHHH 486
Score = 29.3 bits (65), Expect = 1.1
Identities = 25/181 (13%), Positives = 49/181 (27%), Gaps = 21/181 (11%)
Query: 56 NSVRTEQKASKVLGLV-FFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFS 114
N + T +A ++ + +F + P + G V F
Sbjct: 128 NGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVAC---LFE 184
Query: 115 SILNPIIYTIFN-----------------RTFRAAFIRLLKCKCGQVTKPIRYRSVNDRA 157
++ FN R F AA +L + ++ + +R + D
Sbjct: 185 DVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTE 244
Query: 158 TASSGPATVPLTLPPTPGRTLSVSMQDVSHTYPTNTKKQEAGGKGRYNKEVKKRERGETS 217
+ LT P+ S + + K EA + + R +
Sbjct: 245 GYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNA 304
Query: 218 N 218
Sbjct: 305 K 305
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 114 bits (286), Expect = 4e-30
Identities = 28/152 (18%), Positives = 61/152 (40%), Gaps = 3/152 (1%)
Query: 1 MRVSFRERNVPFMTKFVPGRESPPPSGYKASANPHRLFKHIKKAQRRTRQASTAANSVRT 60
M+ ++ + + +A A +L ++ + + + +++
Sbjct: 291 MKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERARS--TLQK 348
Query: 61 EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 120
E A+K L ++ F LCW P ++ CP P L + + L + +S++NP
Sbjct: 349 EVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC-SHAPLWLMYLAIVLSHTNSVVNPF 407
Query: 121 IYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRS 152
IY R FR F ++++ + +P +
Sbjct: 408 IYAYRIREFRQTFRKIIRSHVLRQQEPFKAHH 439
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 114 bits (286), Expect = 6e-30
Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 8/141 (5%)
Query: 6 RERNVPFMTKFVPGRESPPPSGYKASANPHRLFKHIKKAQRRT-----RQASTAANSVRT 60
E V T + + + R + +R A
Sbjct: 323 GETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYPPPSR 382
Query: 61 EQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPI 120
E+K ++ + + F++ WAP+ ++ ++ C IP + + WL Y +S +NP
Sbjct: 383 EKKVTRTILAILLAFIITWAPYNVMVLINTFCA---PCIPNTVWTIGYWLCYINSTINPA 439
Query: 121 IYTIFNRTFRAAFIRLLKCKC 141
Y + N TF+ F LL C
Sbjct: 440 CYALCNATFKKTFKHLLMCHY 460
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 114 bits (285), Expect = 7e-30
Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 4/138 (2%)
Query: 6 RERNVPFMTKFVPGRESPPPSGYKASANPHRLFKHIKKAQRRTRQASTAANSVRTEQKAS 65
N M + E+ N RT + + E+KA+
Sbjct: 314 GFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYLH-MNRERKAA 372
Query: 66 KVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIF 125
K LG + F+LCW P+F+ ++ A C E L + +WLGY +S LNP+IY +
Sbjct: 373 KQLGFIMAAFILCWIPYFIFFMVIAFCK---NCCNEHLHMFTIWLGYINSTLNPLIYPLC 429
Query: 126 NRTFRAAFIRLLKCKCGQ 143
N F+ F R+L + G+
Sbjct: 430 NENFKKTFKRILHIRSGE 447
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 113 bits (284), Expect = 2e-29
Identities = 43/161 (26%), Positives = 62/161 (38%), Gaps = 7/161 (4%)
Query: 2 RVSFRERNVPFMTKFVPGRESPPPSGYKASANPHRLFKHIKKAQRRTRQASTAANSVRTE 61
F K + P+R + I + T A E
Sbjct: 347 VAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAY---KFCLKE 403
Query: 62 QKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPII 121
KA K LG++ TF LCW PFF++ I+ I I +++ I+ W+GY +S NP+I
Sbjct: 404 HKALKTLGIIMGTFTLCWLPFFIVNIVHVIQD---NLIRKEVYILLNWIGYVNSGFNPLI 460
Query: 122 YTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRATASSG 162
Y + FR AF LL + + S N SG
Sbjct: 461 YC-RSPDFRIAFQELLCLRRSSLKAYGNGYSSNGNTGEQSG 500
Score = 28.1 bits (62), Expect = 2.3
Identities = 23/155 (14%), Positives = 53/155 (34%), Gaps = 18/155 (11%)
Query: 56 NSVRTEQKASKVLGLV-FFTFVLCWAPFFL-------LQILQAICPTGYCTIPEDLGIVC 107
S+ T+ KA ++ +V + + + P + + + C +
Sbjct: 149 QSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAI 208
Query: 108 LWLGYFSSILN-----PIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRATASSG 162
SSI++ I+ +++R F+ A +L + ++ + +R + D +
Sbjct: 209 -----ASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYKDTEGYYTI 263
Query: 163 PATVPLTLPPTPGRTLSVSMQDVSHTYPTNTKKQE 197
LT P+ S + + K E
Sbjct: 264 GIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDE 298
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 108 bits (272), Expect = 7e-28
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 4/132 (3%)
Query: 31 SANPHRLFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQA 90
+ +++ R ++ E KA K LG++ TF LCW PFF++ I+
Sbjct: 387 GRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHV 446
Query: 91 ICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRY 150
I I +++ I+ W+GY +S NP+IY + FR AF LL + +
Sbjct: 447 IQD---NLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRRSSLKAYGNG 502
Query: 151 RSVNDRATASSG 162
S N SG
Sbjct: 503 YSSNGNTGEQSG 514
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 109 bits (272), Expect = 8e-28
Identities = 33/121 (27%), Positives = 45/121 (37%), Gaps = 1/121 (0%)
Query: 21 ESPPPSGYKASANPHRLFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWA 80
E+ N RT A+ K + +V F+ CWA
Sbjct: 376 EAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYASRSSENVALLKTVIIVLSVFIACWA 435
Query: 81 PFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCK 140
P F+L +L C C I L L +S NPIIYT+ N+ R AFIR++
Sbjct: 436 PLFILLLLDVGCKVKTCDILF-RAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIMGRP 494
Query: 141 C 141
Sbjct: 495 L 495
Score = 35.2 bits (80), Expect = 0.015
Identities = 18/163 (11%), Positives = 44/163 (26%), Gaps = 5/163 (3%)
Query: 57 SVRTEQKASKVLGLV-FFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSS 115
+ + ++ + +L P + A+ + F+
Sbjct: 171 NGSNNFRLFLLISACWVISLILGGLPIMGWNCISALSSCSTVLPLYHKHYILFCTTVFTL 230
Query: 116 ILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRATASSGPATVPLTLPPTPG 175
+L I+ + + ++ + T + L +P
Sbjct: 231 LLLSIVILYCRIYSLVRTRNIFEMLRIDEGLRLKIY----KDTEGYYTIGIGHLLTKSPS 286
Query: 176 RTLSVSMQDVSHTYPTNTKKQEAGGKGRYNKEVKKRERGETSN 218
+ S D + TN + + +N++V RG N
Sbjct: 287 LNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRN 329
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 102 bits (257), Expect = 2e-26
Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 36 RLFKHIKKAQRRTRQA---STAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAIC 92
R+++ K+ R+ +A T+ + E KA K LG++ F LCW PFFL+ I+
Sbjct: 199 RVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFN 258
Query: 93 PTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKC 141
+P+ L + WLGY +S +NPIIY + FR AF RLL
Sbjct: 259 R---DLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAFPR 303
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 83.6 bits (207), Expect = 3e-19
Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 1/144 (0%)
Query: 36 RLFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTG 95
+ + ++ + V ++K K++ +V TF +CW PF + +L I P
Sbjct: 218 VVGITLWASEIPGDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDL 277
Query: 96 YCT-IPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVN 154
Y + + + +WL S++ NPIIY N FR F +C +
Sbjct: 278 YLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCPFISAGDYEGLEMK 337
Query: 155 DRATASSGPATVPLTLPPTPGRTL 178
+ + ++ T T+
Sbjct: 338 STRYLQTQGSVYKVSRLETTISTV 361
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 83.7 bits (207), Expect = 5e-19
Identities = 24/117 (20%), Positives = 45/117 (38%)
Query: 46 RRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGI 105
R R S + R ++ ++++ +V FV CW P + + Q + +
Sbjct: 317 RGVRLLSGSREKDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSSETAVAILR 376
Query: 106 VCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRATASSG 162
C LGY +S LNPI+Y + F+A F + + ++ +
Sbjct: 377 FCTALGYVNSCLNPILYAFLDENFKACFRKFCCASALGRPLEVLFQGPHHHHHHHHH 433
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 78.0 bits (192), Expect = 5e-17
Identities = 22/173 (12%), Positives = 52/173 (30%), Gaps = 11/173 (6%)
Query: 36 RLFKHIKKAQRRTRQASTAANS---------VRTEQKASKVLGLVFFTFVLCWAPFFLLQ 86
+ + ++ + N+ E + +K+ ++ F+L W+P+ ++
Sbjct: 222 NIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVA 281
Query: 87 ILQAICPTGYCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTK 146
+L P + + + S+I NP+IY++ + FR A +
Sbjct: 282 LLAQFGPL--EWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQF 339
Query: 147 PIRYRSVNDRATASSGPATVPLTLPPTPGRTLSVSMQDVSHTYPTNTKKQEAG 199
+ + A P + M + G
Sbjct: 340 DDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQG 392
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 77.4 bits (191), Expect = 5e-17
Identities = 23/129 (17%), Positives = 56/129 (43%), Gaps = 5/129 (3%)
Query: 36 RLFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTG 95
+L +K+A + +++ A + + E++ ++++ ++ F++CW P+ +
Sbjct: 226 QLVFTVKEAAAQQQES---ATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGS 282
Query: 96 YCTIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVND 155
+ + S++ NP+IY + N+ FR + L C + +V+
Sbjct: 283 D--FGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSK 340
Query: 156 RATASSGPA 164
T+ PA
Sbjct: 341 TETSQVAPA 349
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 75.8 bits (186), Expect = 3e-16
Identities = 22/103 (21%), Positives = 43/103 (41%)
Query: 45 QRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLG 104
A R ++ ++++ +V F++CW P + I++A+ T
Sbjct: 362 TTFRTGTWDAYEKDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSW 421
Query: 105 IVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKP 147
C+ LGY +S LNP++Y + F+ F + +P
Sbjct: 422 HFCIALGYTNSCLNPVLYAFLDENFKRCFREFCIPTSSTIEQP 464
Score = 33.0 bits (75), Expect = 0.065
Identities = 14/131 (10%), Positives = 36/131 (27%), Gaps = 4/131 (3%)
Query: 57 SVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWLGYFSSI 116
SVR + ++ + ++ + I + + ++ + +G +
Sbjct: 210 SVRNIFEMLRIDEGLRLKIYKNTEGYYTIGIGHLLTKSP--SLNAAKSELDKAIG--RNT 265
Query: 117 LNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRATASSGPATVPLTLPPTPGR 176
I + F ++ Y S++ A+ + G
Sbjct: 266 NGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGF 325
Query: 177 TLSVSMQDVSH 187
T S+ M
Sbjct: 326 TNSLRMLQQKR 336
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 62.6 bits (152), Expect = 8e-12
Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 9/117 (7%)
Query: 30 ASANPHRLFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQ 89
+ P+R + I + T A + + +KA K ++ F CW P+++ +
Sbjct: 379 YNQTPNRAKRVITTFRTGTWDAYGSKGHQK--RKALKTTVILILAFFACWLPYYIGISID 436
Query: 90 AICPTGY----CTIPEDLGI---VCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKC 139
+ C + + L +F LNPI+Y F+ + L
Sbjct: 437 SFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTS 493
Score = 34.5 bits (79), Expect = 0.020
Identities = 8/101 (7%), Positives = 29/101 (28%), Gaps = 17/101 (16%)
Query: 51 ASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYCTIPEDLGIVCLWL 110
S ++S + ++ + ++ + I + + ++ + +
Sbjct: 233 ISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKS--PSLNAAKSELDKAI 290
Query: 111 GY--------------FSSILNPIIYTI-FNRTFRAAFIRL 136
G F+ ++ + I N + + L
Sbjct: 291 GRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSL 331
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 2e-05
Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 60/216 (27%)
Query: 3 VSFRER----NVPFMTKFVPGRESPPPSGYKASANPHRLFKHIKKAQRRTRQA------- 51
+ R+R N F V R P + +++A R A
Sbjct: 113 IEQRDRLYNDNQVFAKYNVS-RLQP--------------YLKLRQALLELRPAKNVLIDG 157
Query: 52 ------ST-AANSVRTEQKASKVLGLVF-FTFVLCWAPFFLLQILQAIC----------P 93
+ A + + + K+ +F C +P +L++LQ +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 94 TGYCTIPEDLGIVCLWL-------GYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTK 146
I + + L Y + +L ++ + N AF L CK +T
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNVQNAKAWNAF--NLSCKI-LLTT 272
Query: 147 PIRYRSVNDRATASSG--PATVPLTLPPTPGRTLSV 180
R++ V D +A++ + ++ TP S+
Sbjct: 273 --RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid
biosynthesis, lyase; 2.50A {Penicillium roqueforti}
SCOP: a.128.1.4 PDB: 1dgp_A
Length = 300
Score = 32.8 bits (74), Expect = 0.059
Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 5/71 (7%)
Query: 22 SPPPSGYKASANPHRLFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAP 81
+PPP+ + +P +K+ Q + + L F + P
Sbjct: 1 TPPPTQWSYLCHP-----RVKEVQDEVDGYFLENWKFPSFKAVRTFLDAKFSEVTCLYFP 55
Query: 82 FFLLQILQAIC 92
L + C
Sbjct: 56 LALDDRIHFAC 66
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.90
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 2 RVSFRERNVPFMTKFVP 18
R+ F ER + F +F+P
Sbjct: 406 RIPFSERKLKFSNRFLP 422
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1,
membrane protein, signaling protein; NMR {Homo sapiens}
Length = 40
Score = 26.2 bits (57), Expect = 1.3
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 107 CLWLGYFSSILNPIIYTIFNRTFRAAFIRLL 137
L +S +NPIIY + ++ R AF +
Sbjct: 6 ASMLCLLNSTVNPIIYALRSKDLRHAFRSMF 36
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid,
farnesyl diphosphate, magnesium, cyclization, lyase;
HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A
2oa6_A* 3bnx_A* 3cke_A*
Length = 320
Score = 28.6 bits (63), Expect = 1.7
Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 5/70 (7%)
Query: 23 PPPSGYKASANPHRLFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPF 82
PPPS ++ +P +++ + + E+ K + F + P
Sbjct: 16 PPPSTFQPLCHP-----LVEEVSKEVDGYFLQHWNFPNEKARKKFVAAGFSRVTCLYFPK 70
Query: 83 FLLQILQAIC 92
L + C
Sbjct: 71 ALDDRIHFAC 80
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor,
membrane protein; NMR {Synthetic}
Length = 33
Score = 25.4 bits (55), Expect = 2.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 63 KASKVLGLVFFTFVLCWAPFFLLQI 87
+ +K LGLV ++CW P L
Sbjct: 3 RLAKTLGLVLAVLLICWFPVLALMA 27
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.416
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,235,109
Number of extensions: 174726
Number of successful extensions: 298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 27
Length of query: 221
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 131
Effective length of database: 4,188,903
Effective search space: 548746293
Effective search space used: 548746293
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.4 bits)