RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3683
         (221 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 86.6 bits (213), Expect = 9e-21
 Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 38  FKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAPFFLLQILQAICPTGYC 97
            + +   +    Q   +A + + E++ ++++ ++   F++CW P+  +            
Sbjct: 224 GQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQG--S 281

Query: 98  TIPEDLGIVCLWLGYFSSILNPIIYTIFNRTFRAAFIRLLKCKCGQVTKPIRYRSVNDRA 157
                   +  +    S++ NP+IY + N+ FR   +  L C    +       +V+   
Sbjct: 282 DFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTE 341

Query: 158 TASSGPA 164
           T+   PA
Sbjct: 342 TSQVAPA 348


>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus
          (Penicillium roqueforti) [TaxId: 5082]}
          Length = 300

 Score = 30.9 bits (69), Expect = 0.11
 Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 5/71 (7%)

Query: 22 SPPPSGYKASANPHRLFKHIKKAQRRTRQASTAANSVRTEQKASKVLGLVFFTFVLCWAP 81
          +PPP+ +    +P      +K+ Q              + +     L   F      + P
Sbjct: 1  TPPPTQWSYLCHP-----RVKEVQDEVDGYFLENWKFPSFKAVRTFLDAKFSEVTCLYFP 55

Query: 82 FFLLQILQAIC 92
            L   +   C
Sbjct: 56 LALDDRIHFAC 66


>d2incc1 d.15.12.1 (C:3-85) Toluene, o-xylene monooxygenase
           oxygenase subunit TouB {Pseudomonas stutzeri [TaxId:
           316]}
          Length = 83

 Score = 24.0 bits (52), Expect = 6.9
 Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 13/57 (22%)

Query: 143 QVTKPIRYRSVNDRATASSGPATVPLTLPPTPGRTLSVSMQDVSHTYPTNTKKQEAG 199
           QV +   Y S+N R             + P P + L V   +    +P      +AG
Sbjct: 27  QVAEKCAYHSINRR-------------VHPQPEKILRVRRHEDGTLFPRGMIVSDAG 70


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0652    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 797,802
Number of extensions: 34769
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 3
Length of query: 221
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,281,736
Effective search space: 178161304
Effective search space used: 178161304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.6 bits)