BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3685
(1042 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 93/175 (53%), Gaps = 14/175 (8%)
Query: 198 YNCDLCSKEFSRKDNLTDHKKMHQGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTEHKEI 257
Y C C K FSR D+L +H++ H G YKC C K FS K +LT H+
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKP----------YKCPECGKSFSDKKDLTRHQRT 71
Query: 258 HQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGI 315
H G + YKC C K FS++ NL H + H G + Y C C K FS+ +L H + H G
Sbjct: 72 HTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGE 131
Query: 316 R-YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQG 368
+ YKC C K FSR+DNL H+ H G + YKC C K FSR+ L H + H G
Sbjct: 132 KPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 92/165 (55%), Gaps = 5/165 (3%)
Query: 290 YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCD 347
Y C C K FSR +L +H + H G + YKC C K FS K +LT H+ H G + YKC
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 348 LCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLK 405
C K FS++ NL H + H G + Y C C K FS+ +L H + H G + YKC C K
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGK 141
Query: 406 EFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQG 449
FSR+DNL H+ H G + YKC C K FSR+ L H + H G
Sbjct: 142 SFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 93/165 (56%), Gaps = 6/165 (3%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCD 482
Y C C K FSR +L +H + H G + YKC C K FS K +LT+H + H G + YKC
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 483 LCLKEFSRKDNL-TDRKIHQGIR-YKCDLCSKEFSSKGNLTEHMKQHQGIR-YKCDLCSK 539
C K FS++ NL ++ H G + Y C C K FS +L H + H G + YKC C K
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGK 141
Query: 540 EFSRKDNLTEHKEIHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQG 583
FSR+DNL H+ H G + YKC C K FSR+D L H+ H G
Sbjct: 142 SFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 88/168 (52%), Gaps = 5/168 (2%)
Query: 63 YKCNLCSKEFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEHKKLHQGIR-YKCN 120
Y C C K FSR+ +L EH H G + YKC C K FS K L H++ H G + YKC
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 121 LCSKEFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEHKKLHQGIR-YKCNLCSK 178
C K FS+ L H H G + Y C C K FS + L H++ H G + YKC C K
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGK 141
Query: 179 EYFFKRNLTEHKKLHQGIR-YNCDLCSKEFSRKDNLTDHKKMHQGNLT 225
+ + NL H++ H G + Y C C K FSR+D L H++ H G T
Sbjct: 142 SFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 112 bits (281), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 88/165 (53%), Gaps = 5/165 (3%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDHKKIHQGIR-YKCN 66
Y C C K FSR +L +H++ H G + YKC C K FS K +LT H++ H G + YKC
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 67 LCSKEFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEHKKLHQGIR-YKCNLCSK 124
C K FS+ L H H G + Y C C K FS + L H++ H G + YKC C K
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGK 141
Query: 125 EFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEHKKLHQG 168
FSR L H H G + YKC C K FS + +L H++ H G
Sbjct: 142 SFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 88/175 (50%), Gaps = 14/175 (8%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQGIR-YKCD 147
Y C C K FS L EH++ H G + YKC C K FS LT H H G + YKC
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 148 LCSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEYFFKRNLTEHKKLHQGIR-YNCDLCSK 205
C K FS +++L H++ H G + Y C C K + +L H++ H G + Y C C K
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGK 141
Query: 206 EFSRKDNLTDHKKMHQGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTEHKEIHQG 260
FSR+DNL H++ H G YKC C K FSR+D L H+ H G
Sbjct: 142 SFSREDNLHTHQRTHTGEKP----------YKCPECGKSFSRRDALNVHQRTHTG 186
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 93/202 (46%), Gaps = 17/202 (8%)
Query: 513 EFSSKGNLTEHMKQHQGIRYKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKEFSRK 571
EF S ++ + + Y C C K FSR D+L EH+ H G + YKC C K FS K
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62
Query: 572 DNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKDIPY 629
+LT H+ H G + YKC C K FS++ NL H + H G + Y C C K FS+
Sbjct: 63 KDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQL---A 119
Query: 630 EVTVKEESYEGDSINVEENNGNDAVTRDCLEFFKTEQNTTLGKLNKILHQDIRYKCDLCS 689
+ + ++ G+ G D L T Q T G + YKC C
Sbjct: 120 HLRAHQRTHTGEKPYKCPECGKSFSREDNLH---THQRTHTG--------EKPYKCPECG 168
Query: 690 KDFSRKDNLTEHKEIHQGIRVS 711
K FSR+D L H+ H G + S
Sbjct: 169 KSFSRRDALNVHQRTHTGKKTS 190
>pdb|3N2Z|B Chain B, The Structure Of Human Prolylcarboxypeptidase At 2.80
Angstroms Resolution
Length = 446
Score = 127 bits (319), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 120/240 (50%), Gaps = 13/240 (5%)
Query: 735 FEQKLDHFNIEEPRTWKQRYFV-NSTWYKHGGPIFLMIGGEGEASAKWMVEGT---WLDY 790
F+QK+DHF +T+ QRY V + W K+GG I G EG+ W T W D
Sbjct: 8 FQQKVDHFGFNTVKTFNQRYLVADKYWKKNGGSILFYTGNEGDI--IWFCNNTGFMW-DV 64
Query: 791 AHNHNALAVQVEHRFYGKSHPLSDLSVES---LQYLSAEQALADLAYFITSMNTLYSLPA 847
A A+ V EHR+YG+S P D S + L +L++EQALAD A I +
Sbjct: 65 AEELKAMLVFAEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLKRTIPGAE 124
Query: 848 HTKWIAFGGSYPGALAAWLRYKYPHLVHGAMSASGPLRAVVDFPE---YFGVVADALATV 904
+ IA GGSY G LAAW R KYPH+V GA++AS P+ D + +V
Sbjct: 125 NQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFEDLVPCGVFMKIVTTDFRKS 184
Query: 905 STECVKAVQTATHTISKMLKSPSDAKYLTEQFKLCTPLDINNAKDVSSFVESLADNIAGV 964
C +++ + I+++ + S ++LT LC+PL + + + ++ N+A V
Sbjct: 185 GPHCSESIHRSWDAINRLSNTGSGLQWLTGALHLCSPLTSQDIQHLKDWISETWVNLAMV 244
>pdb|3JYH|A Chain A, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|B Chain B, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|C Chain C, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|D Chain D, Human Dipeptidyl Peptidase Dpp7
pdb|3N0T|A Chain A, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|B Chain B, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|C Chain C, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|D Chain D, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
Length = 469
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 125/241 (51%), Gaps = 20/241 (8%)
Query: 723 GVMFEKLPSDQWFEQKLDHFNIEE--PRTWKQRYFVNST-WYKHGGPIFLMIGGEGEASA 779
G M + +++F+Q+LDHFN E +T+ QR+ V+ W + GPIF G EG+ A
Sbjct: 1 GAMDDPGFQERFFQQRLDHFNFERFGNKTFPQRFLVSDRFWVRGEGPIFFYTGNEGDVWA 60
Query: 780 KWMVEGTWLDYAHNHNALAVQVEHRFYGKSHPLSDLSVES--LQYLSAEQALADLAYFIT 837
+ A AL V EHR+YGKS P S + + L+ EQALAD A +
Sbjct: 61 FANNSAFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELLTVEQALADFAELLR 120
Query: 838 SMN---TLYSLPAHTKWIAFGGSYPGALAAWLRYKYPHLVHGAMSASGPLRAVV---DFP 891
++ PA IAFGGSY G L+A+LR KYPHLV GA++AS P+ AV D
Sbjct: 121 ALRRDLGAQDAPA----IAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVAGLGDSN 176
Query: 892 EYFGVVADALATVSTECVKAVQTATHTISKM-LKSPSDAKYLTEQFKLCTPLDINNAKDV 950
++F V S +C + V+ A I + L+ D + +F C PL ++ KD+
Sbjct: 177 QFFRDVTADFEGQSPKCTQGVREAFRQIKDLFLQGAYDT--VRWEFGTCQPL--SDEKDL 232
Query: 951 S 951
+
Sbjct: 233 T 233
>pdb|4EBB|A Chain A, Structure Of Dpp2
pdb|4EBB|B Chain B, Structure Of Dpp2
Length = 472
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/223 (37%), Positives = 116/223 (52%), Gaps = 18/223 (8%)
Query: 732 DQWFEQKLDHFNIEE--PRTWKQRYFVNST-WYKHGGPIFLMIGGEGEASAKWMVEGTWL 788
+++F+Q+LDHFN E +T+ QR+ V+ W + GPIF G EG+ A
Sbjct: 7 ERFFQQRLDHFNFERFGNKTFPQRFLVSDRFWVRGEGPIFFYTGNEGDVWAFANNSAFVA 66
Query: 789 DYAHNHNALAVQVEHRFYGKSHPLSDLSVES--LQYLSAEQALADLAYFITSMN---TLY 843
+ A AL V EHR+YGKS P S + + L+ EQALAD A + ++
Sbjct: 67 ELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELLTVEQALADFAELLRALRRDLGAQ 126
Query: 844 SLPAHTKWIAFGGSYPGALAAWLRYKYPHLVHGAMSASGPLRAVV---DFPEYFGVVADA 900
PA IAFGGSY G L+A+LR KYPHLV GA++AS P+ AV D ++F V
Sbjct: 127 DAPA----IAFGGSYGGXLSAYLRXKYPHLVAGALAASAPVLAVAGLGDSNQFFRDVTAD 182
Query: 901 LATVSTECVKAVQTATHTISKM-LKSPSDAKYLTEQFKLCTPL 942
S +C + V+ A I + L+ D + +F C PL
Sbjct: 183 FEGQSPKCTQGVREAFRQIKDLFLQGAYDT--VRWEFGTCQPL 223
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCD 320
YKC C K FS+ NL KH + H G + YKC C K FS+ +L KH + H G + YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 321 LCLKEFSRKDNLTEHKEIHQ 340
C K FSR D+L+ H+ HQ
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCD 401
YKC C K FS+ NL KH + H G + YKC C K FS+ +L KH + H G + YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 402 LCLKEFSRKDNLTEHKEIHQ 421
C K FSR D+L+ H+ HQ
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 236 YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCD 293
YKC C K FS+ NL +H+ H G + YKC C K FS+ +L KH + H G + YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 294 LCSKEFSRKGNLTKHMKLHQ 313
C K FSR +L++H + HQ
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 505 YKCDLCSKEFSSKGNLTEHMKQHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCD 562
YKC C K FS NL +H + H G + YKC C K FS+ +L +H+ H G + YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 563 LCSKEFSRKDNLTEHKEIHQ 582
C K FSR D+L+ H+ HQ
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 290 YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCD 347
YKC C K FS+ NL KH + H G + YKC C K FS+ +L +H+ H G + YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 348 LCSKKFSRKLNLTKHMKIHQ 367
C K FSR +L++H + HQ
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 371 YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCD 428
YKC C K FS+ NL KH + H G + YKC C K FS+ +L +H+ H G + YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 429 LCSKKFSRKLNLTKHMKIHQ 448
C K FSR +L++H + HQ
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCD 589
YKC C K FS+ NL +H+ H G + YKC C K FS+ +L +H+ H G + YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 590 LCSKKFSRKLNLTKHMKIHQ 609
C K FSR +L++H + HQ
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCD 482
YKC C K FS+ NL KH + H G + YKC C K FS+ +L KH + H G + YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 483 LCLKEFSRKDNLT-DRKIHQ 501
C K FSR D+L+ ++ HQ
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDHKKIHQGIR-YKCN 66
YKC C K FS+ NL H++ H G + YKC C K FS+ +L H++ H G + YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 67 LCSKEFSRNCYLTEHMEQHQ 86
C K FSR+ +L+ H HQ
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEYFFKRNLTEHKKLHQGIR-YNCD 201
YKC C K FS S+L +H++ H G + YKC C K + +L +H++ H G + Y C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 202 LCSKEFSRKDNLTDHKKMHQ 221
C K FSR D+L+ H++ HQ
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCD 616
YKC C K FS+ NL +H+ H G + YKC C K FS+ +L KH + H G + YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 617 LCSKEFSRKD 626
C K FSR D
Sbjct: 65 ECGKSFSRSD 74
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 479 YKCDLCLKEFSRKDNLTD-RKIHQGIR-YKCDLCSKEFSSKGNLTEHMKQHQGIR-YKCD 535
YKC C K FS+ NL ++ H G + YKC C K FS +L +H + H G + YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 536 LCSKEFSRKDNLTEHKEIHQ 555
C K FSR D+L+ H+ HQ
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 63 YKCNLCSKEFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEHKKLHQGIR-YKCN 120
YKC C K FS++ L +H H G + YKC C K FS S L +H++ H G + YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 121 LCSKEFSRNCYLTEHMEQHQ 140
C K FSR+ +L+ H HQ
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQGIR-YKCD 147
YKC C K FS S+L +H++ H G + YKC C K FS++ L +H H G + YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 148 LCSKDFSYKSSLIEHKKLHQ 167
C K FS L H++ HQ
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 171 YKCNLCSKEYFFKRNLTEHKKLHQGIR-YNCDLCSKEFSRKDNLTDHKKMHQGNLTKHMK 229
YKC C K + NL +H++ H G + Y C C K FS+ +L H++ H G
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP---- 60
Query: 230 LHQGIRYKCDLCLKEFSRKDNLTEHKEIHQ 259
YKC C K FSR D+L+ H+ HQ
Sbjct: 61 ------YKCPECGKSFSRSDHLSRHQRTHQ 84
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 452 YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTD-RKIHQGIR-YKCD 508
YKC C K FS+ NL KH + H G + YKC C K FS+ +L ++ H G + YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 509 LCSKEFSSKGNLTEHMKQHQ 528
C K FS +L+ H + HQ
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 46/122 (37%), Gaps = 43/122 (35%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKDIPYEVTVKEESYEGDSIN 644
YKC C K FS+ NL KH + H G + YKC C K FS
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFS--------------------- 43
Query: 645 VEENNGNDAVTRDCLEFFKTEQNTTLGKLNKILHQDIRYKCDLCSKDFSRKDNLTEHKEI 704
Q++ L K + + YKC C K FSR D+L+ H+
Sbjct: 44 ---------------------QSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRT 82
Query: 705 HQ 706
HQ
Sbjct: 83 HQ 84
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 658 CLEFFKT-EQNTTLGKLNKILHQDIRYKCDLCSKDFSRKDNLTEHKEIHQG 707
C E K+ Q++ L K + + YKC C K FS+ +L +H+ H G
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTG 57
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQG 707
YKC C K FS+ NL +H+ H G
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTG 29
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 290 YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR-YK 345
Y C + C + FS+ G+LT+H+++H G + ++C +C++ FSR D+LT H H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 346 CDLCSKKFSRKLNLTKHMKIH 366
CD+C +KF+R +H KIH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 371 YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR-YK 426
Y C + C + FS+ G+LT+H+++H G + ++C +C++ FSR D+LT H H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 427 CDLCSKKFSRKLNLTKHMKIH 447
CD+C +KF+R +H KIH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 505 YKCDL--CSKEFSSKGNLTEHMKQHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQGIR-YK 560
Y C + C + FS G+LT H++ H G + ++C +C + FSR D+LT H H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 561 CDLCSKEFSRKDNLTEHKEIH 581
CD+C ++F+R D H +IH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 532 YKCDL--CSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQGIR-YK 587
Y C + C + FS+ +LT H IH G + ++C +C + FSR D+LT H H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 588 CDLCSKKFSRKLNLTKHMKIH 608
CD+C +KF+R +H KIH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 215 DHKKMHQGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKF 272
D + G+LT+H+++H G + ++C +C++ FSR D+LT H H G + + CD+C +KF
Sbjct: 13 DRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 72
Query: 273 SRKLNLTKHMKIH 285
+R +H KIH
Sbjct: 73 ARSDERKRHTKIH 85
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 54/83 (65%), Gaps = 7/83 (8%)
Query: 425 YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YK 480
Y C + C ++FS+ +LT+H++IH G + ++C +C + FSR +LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 481 CDLCLKEFSRKDNLTDRKIHQGI 503
CD+C ++F+R D +RK H I
Sbjct: 65 CDICGRKFARSD---ERKRHTKI 84
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 236 YKCDL--CLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YK 291
Y C + C + FS+ +LT H IH G + ++C +C + FSR +LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 292 CDLCSKEFSRKGNLTKHMKLH 312
CD+C ++F+R +H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 317 YKCDL--CLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YK 372
Y C + C + FS+ +LT H IH G + ++C +C + FSR +LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 373 CDLCSKEFSRKGNLTKHMKLH 393
CD+C ++F+R +H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 559 YKCDL--CSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YK 614
Y C + C + FS+ +LT H IH G + ++C +C + FSR +LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 615 CDLCSKEFSRKD 626
CD+C ++F+R D
Sbjct: 65 CDICGRKFARSD 76
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 36 YKCNL--CSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQGIR-YK 91
Y C + C + FS+ +LT H +IH G + ++C +C + FSR+ +LT H+ H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 92 CDLCSKDFSYKSSLIEHKKLH 112
CD+C + F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 90 YKCDL--CSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQGIR-YK 145
Y C + C + FS SL H ++H G + ++C +C + FSR+ +LT H+ H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 146 CDLCSKDFSYKSSLIEHKKLH 166
CD+C + F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 13/91 (14%)
Query: 171 YKCNL--CSKEYFFKRNLTEHKKLHQGIR-YNCDLCSKEFSRKDNLTDHKKMHQGNLTKH 227
Y C + C + + +LT H ++H G + + C +C + FSR D+LT H + H G
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-- 62
Query: 228 MKLHQGIRYKCDLCLKEFSRKDNLTEHKEIH 258
+ CD+C ++F+R D H +IH
Sbjct: 63 --------FACDICGRKFARSDERKRHTKIH 85
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 9 YKCDL--CSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDHKKIHQGIR-YK 64
Y C + C + FS+ +LT H +IH G + ++C +C + FSR +LT H + H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 65 CNLCSKEFSRN 75
C++C ++F+R+
Sbjct: 65 CDICGRKFARS 75
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 117 YKCNL--CSKEFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEHKKLHQGIR-YK 172
Y C + C + FS++ LT H+ H G + ++C +C ++FS L H + H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 173 CNLCSKEYFFKRNLTEHKKLH 193
C++C +++ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 1 MKLHQGI-GYKCDLCSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDHKKIH 58
+++H G ++C +C + FSR +LT H + H G + + C++C ++F+R H KIH
Sbjct: 26 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 666 QNTTLGKLNKILHQDIRYKCDLCSKDFSRKDNLTEHKEIHQG 707
Q+ +L + +I ++C +C ++FSR D+LT H H G
Sbjct: 18 QSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 290 YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR-YK 345
Y C + C + FSR +LT+H+++H G + ++C +C++ FSR D+LT H H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 346 CDLCSKKFSRKLNLTKHMKIH 366
CD+C +KF+R +H KIH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 371 YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR-YK 426
Y C + C + FSR +LT+H+++H G + ++C +C++ FSR D+LT H H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 427 CDLCSKKFSRKLNLTKHMKIH 447
CD+C +KF+R +H KIH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 263 YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YK 318
Y C + C ++FSR +LT+H++IH G + ++C +C + FSR +LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 319 CDLCLKEFSRKDNLTEHKEIH 339
CD+C ++F+R D H +IH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 344 YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YK 399
Y C + C ++FSR +LT+H++IH G + ++C +C + FSR +LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 400 CDLCLKEFSRKDNLTEHKEIH 420
CD+C ++F+R D H +IH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 532 YKCDL--CSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQGIR-YK 587
Y C + C + FSR +LT H IH G + ++C +C + FSR D+LT H H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 588 CDLCSKKFSRKLNLTKHMKIH 608
CD+C +KF+R +H KIH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 54/83 (65%), Gaps = 7/83 (8%)
Query: 425 YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YK 480
Y C + C ++FSR +LT+H++IH G + ++C +C + FSR +LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 481 CDLCLKEFSRKDNLTDRKIHQGI 503
CD+C ++F+R D +RK H I
Sbjct: 65 CDICGRKFARSD---ERKRHTKI 84
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 505 YKCDL--CSKEFSSKGNLTEHMKQHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQGIR-YK 560
Y C + C + FS +LT H++ H G + ++C +C + FSR D+LT H H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 561 CDLCSKEFSRKDNLTEHKEIH 581
CD+C ++F+R D H +IH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 13/91 (14%)
Query: 198 YNCDL--CSKEFSRKDNLTDHKKMHQGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTEHK 255
Y C + C + FSR +LT H ++H G ++C +C++ FSR D+LT H
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKP----------FQCRICMRNFSRSDHLTTHI 54
Query: 256 EIHQGIR-YKCDLCSKKFSRKLNLTKHMKIH 285
H G + + CD+C +KF+R +H KIH
Sbjct: 55 RTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 36 YKCNL--CSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQGIR-YK 91
Y C + C + FSR +LT H +IH G + ++C +C + FSR+ +LT H+ H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 92 CDLCSKDFSYKSSLIEHKKLH 112
CD+C + F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 559 YKCDL--CSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YK 614
Y C + C + FSR +LT H IH G + ++C +C + FSR +LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 615 CDLCSKEFSRKD 626
CD+C ++F+R D
Sbjct: 65 CDICGRKFARSD 76
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 9 YKCDL--CSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDHKKIHQGIR-YK 64
Y C + C + FSR +LT H +IH G + ++C +C + FSR +LT H + H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 65 CNLCSKEFSRNCYLTEHMEQH 85
C++C ++F+R+ H + H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 90 YKCDL--CSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQGIR-YK 145
Y C + C + FS + L H ++H G + ++C +C + FSR+ +LT H+ H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 146 CDLCSKDFSYKSSLIEHKKLH 166
CD+C + F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 144 YKCDL--CSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEYFFKRNLTEHKKLHQGIR-YN 199
Y C + C + FS + L H ++H G + ++C +C + + +LT H + H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 200 CDLCSKEFSRKDNLTDHKKMH 220
CD+C ++F+R D H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 117 YKCNL--CSKEFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEHKKLHQGIR-YK 172
Y C + C + FSR+ LT H+ H G + ++C +C ++FS L H + H G + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 173 CNLCSKEYFFKRNLTEHKKLH 193
C++C +++ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 1 MKLHQGI-GYKCDLCSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDHKKIH 58
+++H G ++C +C + FSR +LT H + H G + + C++C ++F+R H KIH
Sbjct: 26 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQG 707
++C +C ++FSR D+LT H H G
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTG 59
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 290 YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR-YK 345
Y C + C + FSR LT+H+++H G + ++C +C++ FSR D+LT H H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 346 CDLCSKKFSRKLNLTKHMKIH 366
CD+C +KF+R +H KIH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 371 YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR-YK 426
Y C + C + FSR LT+H+++H G + ++C +C++ FSR D+LT H H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 427 CDLCSKKFSRKLNLTKHMKIH 447
CD+C +KF+R +H KIH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 263 YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YK 318
Y C + C ++FSR LT+H++IH G + ++C +C + FSR +LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 319 CDLCLKEFSRKDNLTEHKEIH 339
CD+C ++F+R D H +IH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 344 YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YK 399
Y C + C ++FSR LT+H++IH G + ++C +C + FSR +LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 400 CDLCLKEFSRKDNLTEHKEIH 420
CD+C ++F+R D H +IH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 532 YKCDL--CSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQGIR-YK 587
Y C + C + FSR LT H IH G + ++C +C + FSR D+LT H H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 588 CDLCSKKFSRKLNLTKHMKIH 608
CD+C +KF+R +H KIH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 53/83 (63%), Gaps = 7/83 (8%)
Query: 425 YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YK 480
Y C + C ++FSR LT+H++IH G + ++C +C + FSR +LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 481 CDLCLKEFSRKDNLTDRKIHQGI 503
CD+C ++F+R D +RK H I
Sbjct: 65 CDICGRKFARSD---ERKRHTKI 84
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 505 YKCDL--CSKEFSSKGNLTEHMKQHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQGIR-YK 560
Y C + C + FS LT H++ H G + ++C +C + FSR D+LT H H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 561 CDLCSKEFSRKDNLTEHKEIH 581
CD+C ++F+R D H +IH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 13/91 (14%)
Query: 198 YNCDL--CSKEFSRKDNLTDHKKMHQGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTEHK 255
Y C + C + FSR LT H ++H G ++C +C++ FSR D+LT H
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKP----------FQCRICMRNFSRSDHLTTHI 54
Query: 256 EIHQGIR-YKCDLCSKKFSRKLNLTKHMKIH 285
H G + + CD+C +KF+R +H KIH
Sbjct: 55 RTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 36 YKCNL--CSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQGIR-YK 91
Y C + C + FSR LT H +IH G + ++C +C + FSR+ +LT H+ H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 92 CDLCSKDFSYKSSLIEHKKLH 112
CD+C + F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 559 YKCDL--CSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YK 614
Y C + C + FSR LT H IH G + ++C +C + FSR +LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 615 CDLCSKEFSRKD 626
CD+C ++F+R D
Sbjct: 65 CDICGRKFARSD 76
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 90 YKCDL--CSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQGIR-YK 145
Y C + C + FS + L H ++H G + ++C +C + FSR+ +LT H+ H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 146 CDLCSKDFSYKSSLIEHKKLH 166
CD+C + F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 9 YKCDL--CSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDHKKIHQGIR-YK 64
Y C + C + FSR LT H +IH G + ++C +C + FSR +LT H + H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 65 CNLCSKEFSRN 75
C++C ++F+R+
Sbjct: 65 CDICGRKFARS 75
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 144 YKCDL--CSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEYFFKRNLTEHKKLHQGIR-YN 199
Y C + C + FS + L H ++H G + ++C +C + + +LT H + H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 200 CDLCSKEFSRKDNLTDHKKMH 220
CD+C ++F+R D H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 117 YKCNL--CSKEFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEHKKLHQGIR-YK 172
Y C + C + FSR+ LT H+ H G + ++C +C ++FS L H + H G + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 173 CNLCSKEYFFKRNLTEHKKLH 193
C++C +++ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 1 MKLHQGI-GYKCDLCSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDHKKIH 58
+++H G ++C +C + FSR +LT H + H G + + C++C ++F+R H KIH
Sbjct: 26 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQG 707
++C +C ++FSR D+LT H H G
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTG 59
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 290 YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR-YK 345
Y C + C + FSR LT+H+++H G + ++C +C++ FSR D+LT H H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 346 CDLCSKKFSRKLNLTKHMKIH 366
CD+C +KF+R +H KIH
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 371 YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR-YK 426
Y C + C + FSR LT+H+++H G + ++C +C++ FSR D+LT H H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 427 CDLCSKKFSRKLNLTKHMKIH 447
CD+C +KF+R +H KIH
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 532 YKCDL--CSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQGIR-YK 587
Y C + C + FSR D LT H IH G + ++C +C + FSR D+LT H H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 588 CDLCSKKFSRKLNLTKHMKIH 608
CD+C +KF+R +H KIH
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 13/91 (14%)
Query: 198 YNCDL--CSKEFSRKDNLTDHKKMHQGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTEHK 255
Y C + C + FSR D LT H ++H G ++C +C++ FSR D+LT H
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKP----------FQCRICMRNFSRSDHLTTHI 53
Query: 256 EIHQGIR-YKCDLCSKKFSRKLNLTKHMKIH 285
H G + + CD+C +KF+R +H KIH
Sbjct: 54 RTHTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 236 YKCDL--CLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YK 291
Y C + C + FSR D LT H IH G + ++C +C + FSR +LT H++ H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 292 CDLCSKEFSRKGNLTKHMKLH 312
CD+C ++F+R +H K+H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 317 YKCDL--CLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YK 372
Y C + C + FSR D LT H IH G + ++C +C + FSR +LT H++ H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 373 CDLCSKEFSRKGNLTKHMKLH 393
CD+C ++F+R +H K+H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 53/83 (63%), Gaps = 7/83 (8%)
Query: 425 YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YK 480
Y C + C ++FSR LT+H++IH G + ++C +C + FSR +LT H++ H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 481 CDLCLKEFSRKDNLTDRKIHQGI 503
CD+C ++F+R D +RK H I
Sbjct: 64 CDICGRKFARSD---ERKRHTKI 83
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 505 YKCDL--CSKEFSSKGNLTEHMKQHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQGIR-YK 560
Y C + C + FS LT H++ H G + ++C +C + FSR D+LT H H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 561 CDLCSKEFSRKDNLTEHKEIH 581
CD+C ++F+R D H +IH
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 559 YKCDL--CSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YK 614
Y C + C + FSR D LT H IH G + ++C +C + FSR +LT H++ H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 615 CDLCSKEFSRKD 626
CD+C ++F+R D
Sbjct: 64 CDICGRKFARSD 75
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 36 YKCNL--CSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQGIR-YK 91
Y C + C + FSR LT H +IH G + ++C +C + FSR+ +LT H+ H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 92 CDLCSKDFSYKSSLIEHKKLH 112
CD+C + F+ H K+H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 90 YKCDL--CSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQGIR-YK 145
Y C + C + FS L H ++H G + ++C +C + FSR+ +LT H+ H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 146 CDLCSKDFSYKSSLIEHKKLH 166
CD+C + F+ H K+H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 9 YKCDL--CSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDHKKIHQGIR-YK 64
Y C + C + FSR LT H +IH G + ++C +C + FSR +LT H + H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 65 CNLCSKEFSRN 75
C++C ++F+R+
Sbjct: 64 CDICGRKFARS 74
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 144 YKCDL--CSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEYFFKRNLTEHKKLHQGIR-YN 199
Y C + C + FS L H ++H G + ++C +C + + +LT H + H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 200 CDLCSKEFSRKDNLTDHKKMH 220
CD+C ++F+R D H K+H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 117 YKCNL--CSKEFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEHKKLHQGIR-YK 172
Y C + C + FSR+ LT H+ H G + ++C +C ++FS L H + H G + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 173 CNLCSKEYFFKRNLTEHKKLH 193
C++C +++ H K+H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 1 MKLHQGI-GYKCDLCSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDHKKIH 58
+++H G ++C +C + FSR +LT H + H G + + C++C ++F+R H KIH
Sbjct: 25 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQG 707
++C +C ++FSR D+LT H H G
Sbjct: 34 FQCRICMRNFSRSDHLTTHIRTHTG 58
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 290 YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR-YK 345
Y C + C + FS NLT+H+++H G + ++C +C++ FSR D+LT H H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 346 CDLCSKKFSRKLNLTKHMKIH 366
CD+C +KF+R +H KIH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 371 YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR-YK 426
Y C + C + FS NLT+H+++H G + ++C +C++ FSR D+LT H H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 427 CDLCSKKFSRKLNLTKHMKIH 447
CD+C +KF+R +H KIH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 505 YKCDL--CSKEFSSKGNLTEHMKQHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQGIR-YK 560
Y C + C + FS NLT H++ H G + ++C +C + FSR D+LT H H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 561 CDLCSKEFSRKDNLTEHKEIH 581
CD+C ++F+R D H +IH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 532 YKCDL--CSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQGIR-YK 587
Y C + C + FS NLT H IH G + ++C +C + FSR D+LT H H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 588 CDLCSKKFSRKLNLTKHMKIH 608
CD+C +KF+R +H KIH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 53/83 (63%), Gaps = 7/83 (8%)
Query: 425 YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YK 480
Y C + C ++FS NLT+H++IH G + ++C +C + FSR +LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 481 CDLCLKEFSRKDNLTDRKIHQGI 503
CD+C ++F+R D +RK H I
Sbjct: 65 CDICGRKFARSD---ERKRHTKI 84
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 222 GNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLT 279
NLT+H+++H G + ++C +C++ FSR D+LT H H G + + CD+C +KF+R
Sbjct: 20 SNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 79
Query: 280 KHMKIH 285
+H KIH
Sbjct: 80 RHTKIH 85
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 236 YKCDL--CLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YK 291
Y C + C + FS NLT H IH G + ++C +C + FSR +LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 292 CDLCSKEFSRKGNLTKHMKLH 312
CD+C ++F+R +H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 317 YKCDL--CLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YK 372
Y C + C + FS NLT H IH G + ++C +C + FSR +LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 373 CDLCSKEFSRKGNLTKHMKLH 393
CD+C ++F+R +H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 559 YKCDL--CSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YK 614
Y C + C + FS NLT H IH G + ++C +C + FSR +LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 615 CDLCSKEFSRKD 626
CD+C ++F+R D
Sbjct: 65 CDICGRKFARSD 76
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 36 YKCNL--CSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQGIR-YK 91
Y C + C + FS NLT H +IH G + ++C +C + FSR+ +LT H+ H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 92 CDLCSKDFSYKSSLIEHKKLH 112
CD+C + F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 13/91 (14%)
Query: 171 YKCNL--CSKEYFFKRNLTEHKKLHQGIR-YNCDLCSKEFSRKDNLTDHKKMHQGNLTKH 227
Y C + C + + NLT H ++H G + + C +C + FSR D+LT H + H G
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-- 62
Query: 228 MKLHQGIRYKCDLCLKEFSRKDNLTEHKEIH 258
+ CD+C ++F+R D H +IH
Sbjct: 63 --------FACDICGRKFARSDERKRHTKIH 85
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 90 YKCDL--CSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQGIR-YK 145
Y C + C + FS S+L H ++H G + ++C +C + FSR+ +LT H+ H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 146 CDLCSKDFSYKSSLIEHKKLH 166
CD+C + F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 9 YKCDL--CSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDHKKIHQGIR-YK 64
Y C + C + FS NLT H +IH G + ++C +C + FSR +LT H + H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 65 CNLCSKEFSRNCYLTEHMEQH 85
C++C ++F+R+ H + H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 117 YKCNL--CSKEFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEHKKLHQGIR-YK 172
Y C + C + FS + LT H+ H G + ++C +C ++FS L H + H G + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 173 CNLCSKEYFFKRNLTEHKKLH 193
C++C +++ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 1 MKLHQGI-GYKCDLCSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDHKKIH 58
+++H G ++C +C + FSR +LT H + H G + + C++C ++F+R H KIH
Sbjct: 26 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQG 707
++C +C ++FSR D+LT H H G
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTG 59
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 290 YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR-YK 345
Y C + C + FSR LT+H+++H G + ++C +C++ FSR D+LT H H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 346 CDLCSKKFSRKLNLTKHMKIH 366
CD+C +KF+R +H KIH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 371 YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR-YK 426
Y C + C + FSR LT+H+++H G + ++C +C++ FSR D+LT H H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 427 CDLCSKKFSRKLNLTKHMKIH 447
CD+C +KF+R +H KIH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 532 YKCDL--CSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQGIR-YK 587
Y C + C + FSR D LT H IH G + ++C +C + FSR D+LT H H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 588 CDLCSKKFSRKLNLTKHMKIH 608
CD+C +KF+R +H KIH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 13/91 (14%)
Query: 198 YNCDL--CSKEFSRKDNLTDHKKMHQGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTEHK 255
Y C + C + FSR D LT H ++H G ++C +C++ FSR D+LT H
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKP----------FQCRICMRNFSRSDHLTTHI 54
Query: 256 EIHQGIR-YKCDLCSKKFSRKLNLTKHMKIH 285
H G + + CD+C +KF+R +H KIH
Sbjct: 55 RTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 236 YKCDL--CLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YK 291
Y C + C + FSR D LT H IH G + ++C +C + FSR +LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 292 CDLCSKEFSRKGNLTKHMKLH 312
CD+C ++F+R +H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 317 YKCDL--CLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YK 372
Y C + C + FSR D LT H IH G + ++C +C + FSR +LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 373 CDLCSKEFSRKGNLTKHMKLH 393
CD+C ++F+R +H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 53/83 (63%), Gaps = 7/83 (8%)
Query: 425 YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YK 480
Y C + C ++FSR LT+H++IH G + ++C +C + FSR +LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 481 CDLCLKEFSRKDNLTDRKIHQGI 503
CD+C ++F+R D +RK H I
Sbjct: 65 CDICGRKFARSD---ERKRHTKI 84
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 505 YKCDL--CSKEFSSKGNLTEHMKQHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQGIR-YK 560
Y C + C + FS LT H++ H G + ++C +C + FSR D+LT H H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 561 CDLCSKEFSRKDNLTEHKEIH 581
CD+C ++F+R D H +IH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 559 YKCDL--CSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YK 614
Y C + C + FSR D LT H IH G + ++C +C + FSR +LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 615 CDLCSKEFSRKD 626
CD+C ++F+R D
Sbjct: 65 CDICGRKFARSD 76
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 36 YKCNL--CSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQGIR-YK 91
Y C + C + FSR LT H +IH G + ++C +C + FSR+ +LT H+ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 92 CDLCSKDFSYKSSLIEHKKLH 112
CD+C + F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 90 YKCDL--CSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQGIR-YK 145
Y C + C + FS L H ++H G + ++C +C + FSR+ +LT H+ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 146 CDLCSKDFSYKSSLIEHKKLH 166
CD+C + F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 9 YKCDL--CSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDHKKIHQGIR-YK 64
Y C + C + FSR LT H +IH G + ++C +C + FSR +LT H + H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 65 CNLCSKEFSRN 75
C++C ++F+R+
Sbjct: 65 CDICGRKFARS 75
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 144 YKCDL--CSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEYFFKRNLTEHKKLHQGIR-YN 199
Y C + C + FS L H ++H G + ++C +C + + +LT H + H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 200 CDLCSKEFSRKDNLTDHKKMH 220
CD+C ++F+R D H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 117 YKCNL--CSKEFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEHKKLHQGIR-YK 172
Y C + C + FSR+ LT H+ H G + ++C +C ++FS L H + H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 173 CNLCSKEYFFKRNLTEHKKLH 193
C++C +++ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 1 MKLHQGI-GYKCDLCSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDHKKIH 58
+++H G ++C +C + FSR +LT H + H G + + C++C ++F+R H KIH
Sbjct: 26 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQG 707
++C +C ++FSR D+LT H H G
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTG 59
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 290 YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR-YK 345
Y C + C + FSR LT+H+++H G + ++C +C++ FSR D+LT H H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 346 CDLCSKKFSRKLNLTKHMKIH 366
CD+C +KF+R +H KIH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 371 YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR-YK 426
Y C + C + FSR LT+H+++H G + ++C +C++ FSR D+LT H H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 427 CDLCSKKFSRKLNLTKHMKIH 447
CD+C +KF+R +H KIH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 532 YKCDL--CSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQGIR-YK 587
Y C + C + FSR D LT H IH G + ++C +C + FSR D+LT H H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 588 CDLCSKKFSRKLNLTKHMKIH 608
CD+C +KF+R +H KIH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 13/91 (14%)
Query: 198 YNCDL--CSKEFSRKDNLTDHKKMHQGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTEHK 255
Y C + C + FSR D LT H ++H G ++C +C++ FSR D+LT H
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKP----------FQCRICMRNFSRSDHLTTHI 54
Query: 256 EIHQGIR-YKCDLCSKKFSRKLNLTKHMKIH 285
H G + + CD+C +KF+R +H KIH
Sbjct: 55 RTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 236 YKCDL--CLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YK 291
Y C + C + FSR D LT H IH G + ++C +C + FSR +LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 292 CDLCSKEFSRKGNLTKHMKLH 312
CD+C ++F+R +H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 317 YKCDL--CLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YK 372
Y C + C + FSR D LT H IH G + ++C +C + FSR +LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 373 CDLCSKEFSRKGNLTKHMKLH 393
CD+C ++F+R +H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 53/83 (63%), Gaps = 7/83 (8%)
Query: 425 YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YK 480
Y C + C ++FSR LT+H++IH G + ++C +C + FSR +LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 481 CDLCLKEFSRKDNLTDRKIHQGI 503
CD+C ++F+R D +RK H I
Sbjct: 65 CDICGRKFARSD---ERKRHTKI 84
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 505 YKCDL--CSKEFSSKGNLTEHMKQHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQGIR-YK 560
Y C + C + FS LT H++ H G + ++C +C + FSR D+LT H H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 561 CDLCSKEFSRKDNLTEHKEIH 581
CD+C ++F+R D H +IH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 559 YKCDL--CSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YK 614
Y C + C + FSR D LT H IH G + ++C +C + FSR +LT H++ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 615 CDLCSKEFSRKD 626
CD+C ++F+R D
Sbjct: 65 CDICGRKFARSD 76
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 36 YKCNL--CSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQGIR-YK 91
Y C + C + FSR LT H +IH G + ++C +C + FSR+ +LT H+ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 92 CDLCSKDFSYKSSLIEHKKLH 112
CD+C + F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 90 YKCDL--CSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQGIR-YK 145
Y C + C + FS L H ++H G + ++C +C + FSR+ +LT H+ H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 146 CDLCSKDFSYKSSLIEHKKLH 166
CD+C + F+ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 9 YKCDL--CSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDHKKIHQGIR-YK 64
Y C + C + FSR LT H +IH G + ++C +C + FSR +LT H + H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 65 CNLCSKEFSRNCYLTEHMEQH 85
C++C ++F+R+ H + H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 144 YKCDL--CSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEYFFKRNLTEHKKLHQGIR-YN 199
Y C + C + FS L H ++H G + ++C +C + + +LT H + H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 200 CDLCSKEFSRKDNLTDHKKMH 220
CD+C ++F+R D H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 117 YKCNL--CSKEFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEHKKLHQGIR-YK 172
Y C + C + FSR+ LT H+ H G + ++C +C ++FS L H + H G + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 173 CNLCSKEYFFKRNLTEHKKLH 193
C++C +++ H K+H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 1 MKLHQGI-GYKCDLCSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDHKKIH 58
+++H G ++C +C + FSR +LT H + H G + + C++C ++F+R H KIH
Sbjct: 26 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQG 707
++C +C ++FSR D+LT H H G
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTG 59
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 7/106 (6%)
Query: 510 CSKEFSSKGNLTEHMKQHQGIR-YKCDL--CSKEFSRKDNLTEHKEIHQGIR-YKCDLCS 565
C+K + +L H ++H G + Y+CD C + FSR D L H+ H G++ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 566 KEFSRKDNLTEHKEIHQGIR-YKCDL--CSKKFSRKLNLTKHMKIH 608
++FSR D+L H H G + + C C KKF+R L +H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
Query: 268 CSKKFSRKLNLTKHMKIHQGIR-YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKCDLCL 323
C+K++ + +L H + H G + Y+CD C + FSR L +H + H G++ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 324 KEFSRKDNLTEHKEIHQGIR-YKCDL--CSKKFSRKLNLTKHMKIH 366
++FSR D+L H H G + + C C KKF+R L +H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
Query: 349 CSKKFSRKLNLTKHMKIHQGIR-YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKCDLCL 404
C+K++ + +L H + H G + Y+CD C + FSR L +H + H G++ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 405 KEFSRKDNLTEHKEIHQGIR-YKCDL--CSKKFSRKLNLTKHMKIH 447
++FSR D+L H H G + + C C KKF+R L +H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 7/106 (6%)
Query: 295 CSKEFSRKGNLTKHMKLHQGIR-YKCDL--CLKEFSRKDNLTEHKEIHQGIR-YKCDLCS 350
C+K + + +L H + H G + Y+CD C + FSR D L H+ H G++ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 351 KKFSRKLNLTKHMKIHQGIR-YKCDL--CSKEFSRKGNLTKHMKLH 393
+KFSR +L H + H G + + C C K+F+R L +H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 7/106 (6%)
Query: 376 CSKEFSRKGNLTKHMKLHQGIR-YKCDL--CLKEFSRKDNLTEHKEIHQGIR-YKCDLCS 431
C+K + + +L H + H G + Y+CD C + FSR D L H+ H G++ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 432 KKFSRKLNLTKHMKIHQGIR-YKCDL--CSKEFSRKGNLTKHMKLH 474
+KFSR +L H + H G + + C C K+F+R L +H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 56/116 (48%), Gaps = 16/116 (13%)
Query: 176 CSKEYFFKRNLTEHKKLHQGIR-YNCDL--CSKEFSRKDNLTDHKKMHQGNLTKHMKLHQ 232
C+K YF +L H + H G + Y CD C + FSR D L H++ H G
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP------- 66
Query: 233 GIRYKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCDL--CSKKFSRKLNLTKHMKIH 285
++C C ++FSR D+L H H G + + C C KKF+R L +H +H
Sbjct: 67 ---FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
Query: 222 GNLTKHMKLHQGIR-YKCDL--CLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLN 277
+L H + H G + Y+CD C + FSR D L H+ H G++ ++C C +KFSR +
Sbjct: 22 SHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDH 81
Query: 278 LTKHMKIHQGIR-YKCDL--CSKEFSRKGNLTKHMKLH 312
L H + H G + + C C K+F+R L +H +H
Sbjct: 82 LKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 537 CSKEFSRKDNLTEHKEIHQGIR-YKCDL--CSKEFSRKDNLTEHKEIHQGIR-YKCDLCS 592
C+K + + +L H H G + Y+CD C + FSR D L H+ H G++ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 593 KKFSRKLNLTKHMKIHQGIR-YKCDL--CSKEFSRKD 626
+KFSR +L H + H G + + C C K+F+R D
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSD 110
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 505 YKCDL--CSKEFSSKGNLTEHMKQHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQGIR-YK 560
Y+CD C + FS L H ++H G++ ++C C ++FSR D+L H H G + +
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFS 96
Query: 561 CDL--CSKEFSRKDNLTEHKEIH 581
C C K+F+R D L H +H
Sbjct: 97 CRWPSCQKKFARSDELVRHHNMH 119
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 403 CLKEFSRKDNLTEHKEIHQGIR-YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKCDLCS 458
C K + + +L H H G + Y+CD C ++FSR L +H + H G++ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 459 KEFSRKGNLTKHMKLHQGIR-YKCDL--CLKEFSRKDNLT 495
++FSR +L H + H G + + C C K+F+R D L
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELV 113
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 68 CSKEFSRNCYLTEHMEQHQGIR-YKCDL--CSKDFSYKSSLIEHKKLHQGIR-YKCNLCS 123
C+K + + +L H +H G + Y+CD C + FS L H++ H G++ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 124 KEFSRNCYLTEHMEQHQGIR-YKCDL--CSKDFSYKSSLIEHKKLH 166
++FSR+ +L H H G + + C C K F+ L+ H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Query: 14 CSKEFSRKYNLTDHKKIHQGIR-YKCNL--CSKEFSRKYNLTDHKKIHQGIR-YKCNLCS 69
C+K + + +L H + H G + Y+C+ C + FSR L H++ H G++ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 70 KEFSRNCYLTEHMEQHQGIR-YKCDL--CSKDFSYKSSLIEHKKLH 112
++FSR+ +L H H G + + C C K F+ L+ H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 149 CSKDFSYKSSLIEHKKLHQGIR-YKCNL--CSKEYFFKRNLTEHKKLHQGIR-YNCDLCS 204
C+K + S L H + H G + Y+C+ C + + L H++ H G++ + C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 205 KEFSRKDNLTDHKKMHQGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTEHKEIH 258
++FSR D+L H + H G + + C K+F+R D L H +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGE--------KPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 9 YKCDL--CSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDHKKIHQGIR-YK 64
Y+CD C + FSR L H++ H G++ ++C C ++FSR +L H + H G + +
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFS 96
Query: 65 CNL--CSKEFSRNCYLTEHMEQH 85
C C K+F+R+ L H H
Sbjct: 97 CRWPSCQKKFARSDELVRHHNMH 119
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 30/131 (22%)
Query: 95 CSKDFSYKSSLIEHKKLHQGIR-YKCNL--CSKEFSRNCYLTEHMEQHQGIR-YKCDLCS 150
C+K + S L H + H G + Y+C+ C + FSR+ L H +H G++ ++C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 151 KDFSYKSSLIEHKKLHQGIR-YKCNLCSKEYFFKRNLTEHKKLHQGIRYNCDLCSKEFSR 209
+ FS L H + H G + + C S C K+F+R
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPS-------------------------CQKKFAR 108
Query: 210 KDNLTDHKKMH 220
D L H MH
Sbjct: 109 SDELVRHHNMH 119
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCD 616
Y C C K F+ K H +H G+R Y C +C KKF K +L HMKIH GI+ Y+C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 617 LCSKEFSRKDIPYE-VTVKEESYEGDSI--NVEENNGNDA 653
+C+K F +D + VT +SYE N E +G +
Sbjct: 70 ICAKRFMWRDSFHRHVTSCTKSYEAAKAEQNTTEASGPSS 109
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCD 320
Y C C K F+ K +HM +H G+R Y C +C K+F K +L HMK+H GI+ Y+C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 321 LCLKEFSRKDNLTEH 335
+C K F +D+ H
Sbjct: 70 ICAKRFMWRDSFHRH 84
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCD 401
Y C C K F+ K +HM +H G+R Y C +C K+F K +L HMK+H GI+ Y+C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 402 LCLKEFSRKDNLTEH 416
+C K F +D+ H
Sbjct: 70 ICAKRFMWRDSFHRH 84
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCD 482
Y C C K F+ K +HM +H G+R Y C +C K+F K +L HMK+H GI+ Y+C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 483 LCLKEFSRKDNL 494
+C K F +D+
Sbjct: 70 ICAKRFMWRDSF 81
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 236 YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCD 293
Y C C K F+ K H +H G+R Y C +C KKF K +L HMKIH GI+ Y+C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 294 LCSKEFSRKGNLTKHM 309
+C+K F + + +H+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 317 YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCD 374
Y C C K F+ K H +H G+R Y C +C KKF K +L HMKIH GI+ Y+C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 375 LCSKEFSRKGNLTKHM 390
+C+K F + + +H+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 398 YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCD 455
Y C C K F+ K H +H G+R Y C +C KKF K +L HMKIH GI+ Y+C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 456 LCSKEFSRKGNLTKHM 471
+C+K F + + +H+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 505 YKCDLCSKEFSSKGNLTEHMKQHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCD 562
Y C C K F+ K HM H G+R Y C +C K+F K +L H +IH GI+ Y+C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 563 LCSKEFSRKDNLTEH 577
+C+K F +D+ H
Sbjct: 70 ICAKRFMWRDSFHRH 84
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEYFFKRNLTEHKKLHQGIR-YNCD 201
Y C C K F++KS H +H G+R Y C +C K++ K +L H K+H GI+ Y C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 202 LCSKEFSRKDNLTDH 216
+C+K F +D+ H
Sbjct: 70 ICAKRFMWRDSFHRH 84
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDHKKIHQGIR-YKCN 66
Y C C K F+ K H +H G+R Y C +C K+F K++L H KIH GI+ Y+CN
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 67 LCSKEF 72
+C+K F
Sbjct: 70 ICAKRF 75
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 117 YKCNLCSKEFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEHKKLHQGIR-YKCN 174
Y C C K F+ HM H G+R Y C +C K F K L+ H K+H GI+ Y+CN
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 175 LCSKEYFFKRNLTEH 189
+C+K + ++ + H
Sbjct: 70 ICAKRFMWRDSFHRH 84
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 63 YKCNLCSKEFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEHKKLHQGIR-YKCN 120
Y C C K F+ HM H G+R Y C +C K F K L+ H K+H GI+ Y+CN
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 121 LCSKEF 126
+C+K F
Sbjct: 70 ICAKRF 75
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQGIR-YKCD 93
Y C C K F+ K H +H G+R Y C +C K+F +L HM+ H GI+ Y+C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 94 LCSKDFSYKSSLIEH 108
+C+K F ++ S H
Sbjct: 70 ICAKRFMWRDSFHRH 84
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 452 YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTDR-KIHQGIR-YKCD 508
Y C C K F+ K +HM +H G+R Y C +C K+F K +L KIH GI+ Y+C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 509 LCSKEFSSKGNLTEHM 524
+C+K F + + H+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 171 YKCNLCSKEYFFKRNLTEHKKLHQGIR-YNCDLCSKEFSRKDNLTDHKKMHQGNLTKHMK 229
Y C C K + K H +H G+R Y C +C K+F K +L HMK
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVG-----------HMK 58
Query: 230 LHQGIR-YKCDLCLKEFSRKDNLTEH 254
+H GI+ Y+C++C K F +D+ H
Sbjct: 59 IHTGIKPYECNICAKRFMWRDSFHRH 84
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 677 LHQDIR-YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDIN 714
+H +R Y C +C K F K +L H +IH GI+ + N
Sbjct: 31 MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
Query: 291 KCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR----YK 345
+C C K+F K L H + H G + ++C C K + RK+NL EH+ + R +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 346 CDLCSKKFSRKLNLTKHMKIHQG-IRYKCDLCSKEFSRKGNLTKHM-KLHQG 395
C +C + F R++ L HM H G + YKC CS++F +K +L HM KLH G
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
Query: 372 KCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR----YK 426
+C C K+F K L H + H G + ++C C K + RK+NL EH+ + R +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 427 CDLCSKKFSRKLNLTKHMKIHQG-IRYKCDLCSKEFSRKGNLTKHM-KLHQG 476
C +C + F R++ L HM H G + YKC CS++F +K +L HM KLH G
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
Query: 506 KCDLCSKEFSSKGNLTEHMKQHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQGIR----YK 560
+C C K+F SK L H ++H G + ++C C K + RK+NL EH+ + R +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 561 CDLCSKEFSRKDNLTEHKEIHQG-IRYKCDLCSKKFSRKLNLTKHM-KIHQG 610
C +C + F R+ L H H G + YKC CS++F +K +L HM K+H G
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 16/121 (13%)
Query: 200 CDLCSKEFSRKDNLTDHKKMHQGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTEHKEIHQ 259
C C K+F K L H + H G ++C C K + RK+NL EH+ +
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKP----------FECPKCGKCYFRKENLLEHEARNC 59
Query: 260 GIR----YKCDLCSKKFSRKLNLTKHMKIHQG-IRYKCDLCSKEFSRKGNLTKHM-KLHQ 313
R + C +C + F R++ L HM H G + YKC CS++F +K +L HM KLH
Sbjct: 60 MNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Query: 314 G 314
G
Sbjct: 120 G 120
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Query: 8 GYKCDLCSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDHKKIHQGIR---- 62
G +C C K+F KY L H + H G + ++C C K + RK NL +H+ + R
Sbjct: 7 GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV 66
Query: 63 YKCNLCSKEFSRNCYLTEHMEQHQG-IRYKCDLCSKDFSYKSSLIEHK-KLHQG 114
+ C++C + F R L HM H G + YKC CS+ F K L H KLH G
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Query: 64 KCNLCSKEFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEHKKLHQGIR----YK 118
+C C K+F YL H +H G + ++C C K + K +L+EH+ + R +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 119 CNLCSKEFSRNCYLTEHMEQHQG-IRYKCDLCSKDFSYKSSLIEHK-KLHQG 168
C++C + F R L HM H G + YKC CS+ F K L H KLH G
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 16/122 (13%)
Query: 145 KCDLCSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEYFFKRNLTEHKKLHQGIR----YN 199
+C C K F K L H + H G + ++C C K YF K NL EH+ + R +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 200 CDLCSKEFSRKDNLTDHKKMHQGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTEHK-EIH 258
C +C + F R+ L H H G + YKC C ++F +K +L H ++H
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMP----------YKCSSCSQQFMQKKDLQSHMIKLH 118
Query: 259 QG 260
G
Sbjct: 119 SG 120
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 57/113 (50%), Gaps = 10/113 (8%)
Query: 426 KCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKH-----MKLHQGIRY 479
+C C KKF K L H + H G + ++C C K + RK NL +H M + + +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-F 67
Query: 480 KCDLCLKEFSRKDNLTDRKI-HQG-IRYKCDLCSKEFSSKGNLTEHM-KQHQG 529
C +C + F R+ L + H G + YKC CS++F K +L HM K H G
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 587 KCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKDIPYEVTVKEESYEGDSINV 645
+C C KKF K L H + H G + ++C C K + RK E E ++ N
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRK---------ENLLEHEARNC 59
Query: 646 EENNGNDAVTRDCLEFFKTEQNTTLGKLNKILHQ-DIRYKCDLCSKDFSRKDNLTEHK-E 703
+ C E F+ +L+ + H ++ YKC CS+ F +K +L H +
Sbjct: 60 MNRSEQVFTCSVCQETFRRRMEL---RLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIK 116
Query: 704 IHQG 707
+H G
Sbjct: 117 LHSG 120
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 290 YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR-YK 345
Y C + C + FS+K NL H+++H G + ++C +C++ FS++ +L H H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 346 CDLCSKKFSRKLNLTKHMKIH 366
CD+C +KF+ T+H KIH
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 371 YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR-YK 426
Y C + C + FS+K NL H+++H G + ++C +C++ FS++ +L H H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 427 CDLCSKKFSRKLNLTKHMKIH 447
CD+C +KF+ T+H KIH
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 263 YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YK 318
Y C + C ++FS+K NL H++IH G + ++C +C + FS++ +L H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 319 CDLCLKEFSRKDNLTEHKEIH 339
CD+C ++F+ T H +IH
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 344 YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YK 399
Y C + C ++FS+K NL H++IH G + ++C +C + FS++ +L H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 400 CDLCLKEFSRKDNLTEHKEIH 420
CD+C ++F+ T H +IH
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 532 YKCDL--CSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQGIR-YK 587
Y C + C + FS+K NL H IH G + ++C +C + FS++ +L H H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 588 CDLCSKKFSRKLNLTKHMKIH 608
CD+C +KF+ T+H KIH
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 13/91 (14%)
Query: 198 YNCDL--CSKEFSRKDNLTDHKKMHQGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTEHK 255
Y C + C + FS+K NL H ++H G ++C +C++ FS++ +L H
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKP----------FQCRICMRNFSQQASLNAHI 54
Query: 256 EIHQGIR-YKCDLCSKKFSRKLNLTKHMKIH 285
H G + + CD+C +KF+ T+H KIH
Sbjct: 55 RTHTGEKPFACDICGRKFATLHTRTRHTKIH 85
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 36 YKCNL--CSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQGIR-YK 91
Y C + C + FS+K NL H +IH G + ++C +C + FS+ L H+ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 92 CDLCSKDFSYKSSLIEHKKLH 112
CD+C + F+ + H K+H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 425 YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YK 480
Y C + C ++FS+K NL H++IH G + ++C +C + FS++ +L H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 481 CDLCLKEFS 489
CD+C ++F+
Sbjct: 65 CDICGRKFA 73
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 479 YKCDL--CLKEFSRKDNL-TDRKIHQGIR-YKCDLCSKEFSSKGNLTEHMKQHQGIR-YK 533
Y C + C + FS+K NL T +IH G + ++C +C + FS + +L H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 534 CDLCSKEFSRKDNLTEHKEIH 554
CD+C ++F+ T H +IH
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 559 YKCDL--CSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YK 614
Y C + C + FS+K NL H IH G + ++C +C + FS++ +L H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 615 CDLCSKEFS 623
CD+C ++F+
Sbjct: 65 CDICGRKFA 73
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 90 YKCDL--CSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQGIR-YK 145
Y C + C + FS K++L H ++H G + ++C +C + FS+ L H+ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 146 CDLCSKDFSYKSSLIEHKKLH 166
CD+C + F+ + H K+H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 9 YKCDL--CSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDHKKIHQGIR-YK 64
Y C + C + FS+K NL H +IH G + ++C +C + FS++ +L H + H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 65 CNLCSKEFSRNCYLTEHMEQH 85
C++C ++F+ T H + H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 144 YKCDL--CSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEYFFKRNLTEHKKLHQGIR-YN 199
Y C + C + FS K++L H ++H G + ++C +C + + + +L H + H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 200 CDLCSKEFSRKDNLTDHKKMH 220
CD+C ++F+ T H K+H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 117 YKCNL--CSKEFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEHKKLHQGIR-YK 172
Y C + C + FS+ L H+ H G + ++C +C ++FS ++SL H + H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 173 CNLCSKEYFFKRNLTEHKKLH 193
C++C +++ T H K+H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 63 YKCNL--CSKEFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEHKKLHQGIR-YK 118
Y C + C + FS+ L H+ H G + ++C +C ++FS ++SL H + H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 119 CNLCSKEFSRNCYLTEHMEQH 139
C++C ++F+ T H + H
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 586 YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRK 625
Y C + C ++FS+K NL H++IH G + ++C +C + FS++
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQ 47
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 236 YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCD 293
+ C +C K F R L+ H IH R Y C C K+F +K ++ KH IH G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 294 LCSKEFSRKGNLTKHMKLHQG 314
+C K FS+ NL H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 317 YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCD 374
+ C +C K F R L+ H IH R Y C C K+F +K ++ KH IH G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 375 LCSKEFSRKGNLTKHMKLHQG 395
+C K FS+ NL H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 398 YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCD 455
+ C +C K F R L+ H IH R Y C C K+F +K ++ KH IH G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 456 LCSKEFSRKGNLTKHMKLHQG 476
+C K FS+ NL H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCD 589
+ C +C K F R L+ H IH R Y C C K F +K ++ +H IH G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 590 LCSKKFSRKLNLTKHMKIHQG 610
+C K FS+ NL H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 290 YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCD 347
+ C +C K F R L+ H+ +H R Y C C K F +K ++ +H IH G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 348 LCSKKFSRKLNLTKHMKIHQG 368
+C K FS+ NL H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 371 YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCD 428
+ C +C K F R L+ H+ +H R Y C C K F +K ++ +H IH G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 429 LCSKKFSRKLNLTKHMKIHQG 449
+C K FS+ NL H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 505 YKCDLCSKEFSSKGNLTEHMKQHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCD 562
+ C +C K F L+ H+ H R Y C C K F +K ++ +H IH G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 563 LCSKEFSRKDNLTEHKEIHQG 583
+C K FS+ NL H H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDHKKIHQGIR-YKCN 66
+ C +C K F R L+ H IH R Y C C K F +K ++ H IH G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 67 LCSKEFSRNCYLTEHMEQHQG 87
+C K FS++ L H +H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 452 YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTDRK-IHQGIR-YKCD 508
+ C +C K F R L+ H+ +H R Y C C K F +K ++ IH G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 509 LCSKEFSSKGNLTEHMKQHQG 529
+C K FS NL H ++H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQGIR-YKCD 93
+ C +C K F R L+ H IH R Y C C K F + + +H H G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 94 LCSKDFSYKSSLIEHKKLHQG 114
+C K FS S+LI H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCD 616
+ C +C K F R L+ H IH R Y C C K+F +K ++ KH IH G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 617 LCSKEFSR 624
+C K FS+
Sbjct: 62 VCGKAFSQ 69
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEYFFKRNLTEHKKLHQGIR-YNCD 201
+ C +C K F S+L H +H R Y C C K + K ++ +H +H G + + C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 202 LCSKEFSRKDNLTDHKKMHQG 222
+C K FS+ NL H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQGIR-YKCD 147
+ C +C K F S+L H +H R Y C C K F + + +H H G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 148 LCSKDFSYKSSLIEHKKLHQG 168
+C K FS S+LI H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 479 YKCDLCLKEFSRKDNL-TDRKIHQGIR-YKCDLCSKEFSSKGNLTEHMKQHQGIR-YKCD 535
+ C +C K F R L T IH R Y C C K F K ++ +H H G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 536 LCSKEFSRKDNLTEHKEIHQG 556
+C K FS+ NL H H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 43/123 (34%), Gaps = 43/123 (34%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKDIPYEVTVKEESYEGDSIN 644
+ C +C K F R L+ H+ IH R Y C C K F +K +K+ ++ I+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKS-----DMKKHTF----IH 52
Query: 645 VEENNGNDAVTRDCLEFFKTEQNTTLGKLNKILHQDIRYKCDLCSKDFSRKDNLTEHKEI 704
E +KC +C K FS+ NL H
Sbjct: 53 TGEKP---------------------------------HKCQVCGKAFSQSSNLITHSRK 79
Query: 705 HQG 707
H G
Sbjct: 80 HTG 82
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 236 YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCD 293
+KC++C K FSRKD L H H G++ YKC C + +L KH++IH R +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 294 LCSKEFSRKGNLTKHMKLHQG 314
+C LT H++ H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCD 320
+KC++C K FSRK L HM+ H G++ YKC C + +L KH+++H R +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 321 LCLKEFSRKDNLTEHKEIHQG 341
+C LT H H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCD 401
+KC++C K FSRK L HM+ H G++ YKC C + +L KH+++H R +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 402 LCLKEFSRKDNLTEHKEIHQG 422
+C LT H H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCD 589
+KC++C K FSRKD L H H G++ YKC C + +L +H IH R +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 590 LCSKKFSRKLNLTKHMKIHQG 610
+C LT H++ H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 290 YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCD 347
+KC++C K FSRK L HM+ H G++ YKC C + +L +H IH R +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 348 LCSKKFSRKLNLTKHMKIHQG 368
+C LT H++ H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 371 YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCD 428
+KC++C K FSRK L HM+ H G++ YKC C + +L +H IH R +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 429 LCSKKFSRKLNLTKHMKIHQG 449
+C LT H++ H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCD 616
+KC++C K FSRKD L H H G++ YKC C + +L KH++IH R +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 617 LCSKEFSRKDIPYEVTVKEESYEGDS 642
+C ++ ++ ++TV S+ GDS
Sbjct: 69 IC--PYASRNS-SQLTVHLRSHTGDS 91
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDHKKIHQGIR-YKCN 66
+KC++C K FSRK L H + H G++ YKC C + +L H +IH R +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 67 LCSKEFSRNCYLTEHMEQHQG 87
+C + LT H+ H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCD 482
+KC++C K FSRK L HM+ H G++ YKC C + +L KH+++H R +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 483 LCLKEFSRKDNLT 495
+C LT
Sbjct: 69 ICPYASRNSSQLT 81
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 63 YKCNLCSKEFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEHKKLHQGIR-YKCN 120
+KC +C K FSR L HM H G++ YKC C + SSL +H ++H R +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 121 LCSKEFSRNCYLTEHMEQHQG 141
+C + LT H+ H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 505 YKCDLCSKEFSSKGNLTEHMKQHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCD 562
+KC++C K FS K L HM+ H G++ YKC C + +L +H IH R +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 563 LCSKEFSRKDNLTEHKEIHQG 583
+C LT H H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 452 YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTDR-KIHQGIR-YKCD 508
+KC++C K FSRK L HM+ H G++ YKC C + +L +IH R +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 509 LCSKEFSSKGNLTEHMKQHQG 529
+C + LT H++ H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 198 YNCDLCSKEFSRKDNLTDHKKMHQGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKE 256
+ C++C K FSRKD L HM+ H G++ YKC C + +L +H
Sbjct: 9 HKCEVCGKCFSRKD-----------KLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR 57
Query: 257 IHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQG 287
IH R +KC +C LT H++ H G
Sbjct: 58 IHSDERPFKCQICPYASRNSSQLTVHLRSHTG 89
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEYFFKRNLTEHKKLHQGIR-YNCD 201
+KC++C K FS K L H + H G++ YKC C +L +H ++H R + C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 202 LCSKEFSRKDNLTDHKKMHQGN 223
+C LT H + H G+
Sbjct: 69 ICPYASRNSSQLTVHLRSHTGD 90
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQGIR-YKCD 147
+KC++C K FS K L H + H G++ YKC C + + L +H+ H R +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 148 LCSKDFSYKSSLIEHKKLHQG 168
+C S L H + H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIR 709
+KC++C K FSRKD L H H G++
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVK 35
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 290 YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR-YK 345
Y C + C + FS+K NL H+++H G + ++C +C++ FS+ L +H H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 346 CDLCSKKFSRKLNLTKHMKIH 366
CD+C +KF+ +H KIH
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 371 YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR-YK 426
Y C + C + FS+K NL H+++H G + ++C +C++ FS+ L +H H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 427 CDLCSKKFSRKLNLTKHMKIH 447
CD+C +KF+ +H KIH
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 263 YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YK 318
Y C + C ++FS+K NL H++IH G + ++C +C + FS+ L +H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 319 CDLCLKEFSRKDNLTEHKEIH 339
CD+C ++F+ H +IH
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 344 YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YK 399
Y C + C ++FS+K NL H++IH G + ++C +C + FS+ L +H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 400 CDLCLKEFSRKDNLTEHKEIH 420
CD+C ++F+ H +IH
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 532 YKCDL--CSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQGIR-YK 587
Y C + C + FS+K NL H IH G + ++C +C + FS+ L +H H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 588 CDLCSKKFSRKLNLTKHMKIH 608
CD+C +KF+ +H KIH
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 398 YKCDL--CLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YK 453
Y C + C + FS+K NL H IH G + ++C +C + FS+ L +H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 454 CDLCSKEFSRKGNLTKHMKLH 474
CD+C ++F+ +H K+H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 36 YKCNL--CSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQGIR-YK 91
Y C + C + FS+K NL H +IH G + ++C +C + FS++ L +H+ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 92 CDLCSKDFSYKSSLIEHKKLH 112
CD+C + F+ + H K+H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 425 YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YK 480
Y C + C ++FS+K NL H++IH G + ++C +C + FS+ L +H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 481 CDLCLKEFS 489
CD+C ++F+
Sbjct: 65 CDICGRKFA 73
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 13/91 (14%)
Query: 198 YNCDL--CSKEFSRKDNLTDHKKMHQGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTEHK 255
Y C + C + FS+K NL H ++H G ++C +C++ FS+ L +H
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKP----------FQCRICMRNFSQHTGLNQHI 54
Query: 256 EIHQGIR-YKCDLCSKKFSRKLNLTKHMKIH 285
H G + + CD+C +KF+ +H KIH
Sbjct: 55 RTHTGEKPFACDICGRKFATLHTRDRHTKIH 85
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 559 YKCDL--CSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YK 614
Y C + C + FS+K NL H IH G + ++C +C + FS+ L +H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 615 CDLCSKEFS 623
CD+C ++F+
Sbjct: 65 CDICGRKFA 73
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 90 YKCDL--CSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQGIR-YK 145
Y C + C + FS K++L H ++H G + ++C +C + FS++ L +H+ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 146 CDLCSKDFSYKSSLIEHKKLH 166
CD+C + F+ + H K+H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 479 YKCDL--CLKEFSRKDNL-TDRKIHQGIR-YKCDLCSKEFSSKGNLTEHMKQHQGIR-YK 533
Y C + C + FS+K NL T +IH G + ++C +C + FS L +H++ H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 534 CDLCSKEFSRKDNLTEHKEIH 554
CD+C ++F+ H +IH
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 9 YKCDL--CSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDHKKIHQGIR-YK 64
Y C + C + FS+K NL H +IH G + ++C +C + FS+ L H + H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 65 CNLCSKEFS 73
C++C ++F+
Sbjct: 65 CDICGRKFA 73
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 144 YKCDL--CSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEYFFKRNLTEHKKLHQGIR-YN 199
Y C + C + FS K++L H ++H G + ++C +C + + L +H + H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 200 CDLCSKEFSRKDNLTDHKKMH 220
CD+C ++F+ H K+H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 117 YKCNL--CSKEFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEHKKLHQGIR-YK 172
Y C + C + FS+ L H+ H G + ++C +C ++FS + L +H + H G + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 173 CNLCSKEYFFKRNLTEHKKLH 193
C++C +++ H K+H
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDHKKIHQG 60
YKCD C F K NL HK +H G + Y+CN+C +F+R NL H +IH G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQG 610
YKCD C F K NL HK +H G + Y+C++C +F+R NL H +IH G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 236 YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQG 287
YKCD C F K NL HK +H G + Y+C++C +F+R NL H +IH G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 317 YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQG 368
YKCD C F K NL HK +H G + Y+C++C +F+R NL H +IH G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 398 YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQG 449
YKCD C F K NL HK +H G + Y+C++C +F+R NL H +IH G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQG 583
YKCD C F K NL HK +H G + Y+C++C +F+R NL H IH G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 290 YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQG 341
YKCD C F KGNL H +H G + Y+C++C +F+R NL H IH G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 371 YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQG 422
YKCD C F KGNL H +H G + Y+C++C +F+R NL H IH G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 505 YKCDLCSKEFSSKGNLTEHMKQHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQG 556
YKCD C F KGNL H H G + Y+C++C +F+R NL H IH G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQG 141
YKCD C F YK +L HK +H G + Y+CN+C +F+R L H H G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEYFFKRNLTEHKKLHQG 195
YKCD C F YK +L HK +H G + Y+CN+C ++ NL H ++H G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 452 YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNL-TDRKIHQG 502
YKCD C F KGNL H +H G + Y+C++C +F+R NL T +IH G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQG 87
YKC+ C F K NL HK +H G + Y+CN+C +F+R L H H G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 198 YNCDLCSKEFSRKDNLTDHKKMHQGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTEHKEI 257
Y CD C F K NL HK +H G Y+C++C +F+R NL H I
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKP----------YRCNICGAQFNRPANLKTHTRI 67
Query: 258 HQG 260
H G
Sbjct: 68 HSG 70
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSR 624
YKCD C F K NL H +H G + Y+C++C +F+R
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR 57
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 680 DIRYKCDLCSKDFSRKDNLTEHKEIHQG 707
D YKCD C F K NL HK +H G
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTG 42
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQG 707
Y+C++C F+R NL H IH G
Sbjct: 46 YRCNICGAQFNRPANLKTHTRIHSG 70
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 510 CSKEFSSKGNLTEHMKQHQGIRYKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCDL--CSK 566
C+K F + +H+ H + C C K F L H+ +H G + ++C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 567 EFSRKDNLTEHKEIHQGIR-YKC--DLCSKKFSRKLNLTKHMKIH 608
FS NL H IH G R Y C D C+KKF++ NL H+ H
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 268 CSKKFSRKLNLTKHMKIHQGIRYKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDL--CLK 324
C+K F + KH+ H + C C K F L +H +H G + ++C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 325 EFSRKDNLTEHKEIHQGIR-YKC--DLCSKKFSRKLNLTKHMKIH 366
FS NL H IH G R Y C D C+KKF++ NL H+ H
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 349 CSKKFSRKLNLTKHMKIHQGIRYKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDL--CLK 405
C+K F + KH+ H + C C K F L +H +H G + ++C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 406 EFSRKDNLTEHKEIHQGIR-YKC--DLCSKKFSRKLNLTKHMKIH 447
FS NL H IH G R Y C D C+KKF++ NL H+ H
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 224 LTKHMKLHQGIRYKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCDL--CSKKFSRKLNLTK 280
+ KH+ H + C C K F L H+ +H G + ++C C K+FS NL
Sbjct: 23 MRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRT 82
Query: 281 HMKIHQGIR-YKC--DLCSKEFSRKGNLTKHMKLH 312
H++IH G R Y C D C+K+F++ NL H+ H
Sbjct: 83 HVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 122 CSKEFSRNCYLTEHMEQHQGIRYKCDLCSKDFSYKSSLIEHKKLHQGIR-YKCNL--CSK 178
C+K F N + +H+ H + C C K F S L H+ +H G + ++C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 179 EYFFKRNLTEHKKLHQGIR-YNC--DLCSKEFSRKDNLTDHKKMH 220
+ NL H ++H G R Y C D C+K+F++ NL H H
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 537 CSKEFSRKDNLTEHKEIHQGIRYKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCDL--CSK 593
C+K F + +H H + C C K F L H+ +H G + ++C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 594 KFSRKLNLTKHMKIHQGIR-YKC--DLCSKEFSR 624
+FS NL H++IH G R Y C D C+K+F++
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQ 106
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 241 CLKEFSRKDNLTEHKEIHQGIRYKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDL--CSK 297
C K F + +H H + C C K F L +H +H G + ++C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 298 EFSRKGNLTKHMKLHQGIR-YKC--DLCLKEFSRKDNLTEHKEIH 339
FS NL H+++H G R Y C D C K+F++ NL H H
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 322 CLKEFSRKDNLTEHKEIHQGIRYKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDL--CSK 378
C K F + +H H + C C K F L +H +H G + ++C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 379 EFSRKGNLTKHMKLHQGIR-YKC--DLCLKEFSRKDNLTEHKEIH 420
FS NL H+++H G R Y C D C K+F++ NL H H
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 430 CSKKFSRKLNLTKHMKIHQGIRYKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDL--CLK 486
C+K F + KH+ H + C C K F L +H +H G + ++C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 487 EFSRKDNL-TDRKIHQGIR-YKC--DLCSKEFSSKGNLTEHMKQH 527
FS NL T +IH G R Y C D C+K+F+ NL H+ H
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 68 CSKEFSRNCYLTEHMEQHQGIRYKCDLCSKDFSYKSSLIEHKKLHQGIR-YKCNL--CSK 124
C+K F N + +H+ H + C C K F S L H+ +H G + ++C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 125 EFSRNCYLTEHMEQHQGIR-YKC--DLCSKDFSYKSSLIEHKKLH 166
FS + L H+ H G R Y C D C+K F+ ++L H H
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 403 CLKEFSRKDNLTEHKEIHQGIRYKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDL--CSK 459
C K F + +H H + C C K F L +H +H G + ++C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 460 EFSRKGNLTKHMKLHQGIR-YKC--DLCLKEFSRKDNL 494
FS NL H+++H G R Y C D C K+F++ NL
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNL 110
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 11 CDLCSKEFSRKYNLTDHKKIHQGIR-YKCNL--CSKEFSRKYNLTDHKKIHQGIR-YKCN 66
C C K F L H+ +H G + ++C C K FS +NL H +IH G R Y C
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP 96
Query: 67 L--CSKEFSRNCYLTEHMEQH 85
C+K+F+++ L H+ H
Sbjct: 97 FDGCNKKFAQSTNLKSHILTH 117
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 47/107 (43%), Gaps = 11/107 (10%)
Query: 484 CLKEFSRKDNLTDRK---IHQGIRYKCDLCSKEFSSKGNLTEHMKQHQGIR-YKCDL--C 537
C K F +DN RK H + C C K F L H H G + ++C C
Sbjct: 13 CTKMF--RDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGC 70
Query: 538 SKEFSRKDNLTEHKEIHQGIR-YKC--DLCSKEFSRKDNLTEHKEIH 581
K FS NL H IH G R Y C D C+K+F++ NL H H
Sbjct: 71 GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 48/112 (42%), Gaps = 17/112 (15%)
Query: 181 FFKRNLTEHKKLH-QGIRYN-CDLCSKEFSRKDNLTDHKKMHQGNLTKHMKLHQGIRYKC 238
F+ N K LH G R + C C K F L H+ +H G ++C
Sbjct: 16 MFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKP----------FQC 65
Query: 239 DL--CLKEFSRKDNLTEHKEIHQGIR-YKC--DLCSKKFSRKLNLTKHMKIH 285
C K FS NL H IH G R Y C D C+KKF++ NL H+ H
Sbjct: 66 TFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Query: 14 CSKEFSRKYNLTDHKKIHQGIRYKCNLCSKEFSRKYNLTDHKKIHQGIR-YKCNL--CSK 70
C+K F + H H + C C K F L H+ +H G + ++C C K
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72
Query: 71 EFSRNCYLTEHMEQHQGIR-YKC--DLCSKDFSYKSSLIEHKKLH 112
FS + L H+ H G R Y C D C+K F+ ++L H H
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 10/90 (11%)
Query: 173 CNLCSKEYFFKRNLTEHKKLHQGIR-YNCDLCSKEFSRKDNLTDHKKMHQGNLTKHMKLH 231
C +C K + +L HK H G + Y+C +C F RKD ++ H + H G++ K
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK----- 64
Query: 232 QGIRYKCDLCLKEFSRKDNLTEH-KEIHQG 260
Y C C K FSR D+L H K++H G
Sbjct: 65 ---PYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 507 CDLCSKEFSSKGNLTEHMKQHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQGI---RYKCD 562
C++C K F +L H H G + Y C +C F RKD ++ H H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 563 LCSKEFSRKDNLTEH-KEIHQG 583
C K FSR D+L H K++H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 265 CDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGI---RYKCD 320
C++C K F +L +H H G + Y C +C F RK ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 321 LCLKEFSRKDNLTEH-KEIHQG 341
C K FSR D+L H K++H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 346 CDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGI---RYKCD 401
C++C K F +L +H H G + Y C +C F RK ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 402 LCLKEFSRKDNLTEH-KEIHQG 422
C K FSR D+L H K++H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 534 CDLCSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQGI---RYKCD 589
C++C K F +L HK H G + Y C +C F RKD ++ H H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 590 LCSKKFSRKLNLTKHMK-IHQG 610
C K FSR +L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 8 GYKCDLCSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDHKKIHQGI---RY 63
G C++C K F Y+L HK H G + Y C +C F RK ++ H + H G Y
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 64 KCNLCSKEFSRNCYLTEHMEQ 84
C C K FSR +L H++Q
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQ 87
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 238 CDLCLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGI---RYKCD 293
C++C K F +L HK H G + Y C +C +F RK ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 294 LCSKEFSRKGNLTKHMK-LHQG 314
C K FSR +L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 319 CDLCLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGI---RYKCD 374
C++C K F +L HK H G + Y C +C +F RK ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 375 LCSKEFSRKGNLTKHMK-LHQG 395
C K FSR +L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 400 CDLCLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGI---RYKCD 455
C++C K F +L HK H G + Y C +C +F RK ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 456 LCSKEFSRKGNLTKHMK-LHQG 476
C K FSR +L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 292 CDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGI---RYKCD 347
C++C K F +L +H H G + Y C +C F RKD ++ H H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 348 LCSKKFSRKLNLTKHMK-IHQG 368
C K FSR +L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 373 CDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGI---RYKCD 428
C++C K F +L +H H G + Y C +C F RKD ++ H H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 429 LCSKKFSRKLNLTKHMK-IHQG 449
C K FSR +L H+K +H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 427 CDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGI---RYKCD 482
C++C K F +L +H H G + Y C +C F RK ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 483 LCLKEFSRKDNLTD--RKIHQG 502
C K FSR D+L +++H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 200 CDLCSKEFSRKDNLTDHKKMHQGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTEHKEIHQ 259
C++C K F +L HK H G Y C +C F RKD ++ H H
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKP----------YSCPVCGLRFKRKDRMSYHVRSHD 59
Query: 260 GI---RYKCDLCSKKFSRKLNLTKHMK-IHQG 287
G Y C C K FSR +L H+K +H G
Sbjct: 60 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 561 CDLCSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGI---RYKCD 616
C++C K F +L HK H G + Y C +C +F RK ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 617 LCSKEFSRKD 626
C K FSR D
Sbjct: 70 SCGKGFSRPD 79
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 481 CDLCLKEFSRKDNLTDRKI-HQGIR-YKCDLCSKEFSSKGNLTEHMKQHQGI---RYKCD 535
C++C K F +L K+ H G + Y C +C F K ++ H++ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 536 LCSKEFSRKDNLTEH-KEIHQG 556
C K FSR D+L H K++H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 38 CNLCSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQGI---RYKCD 93
C +C K F Y+L HK H G + Y C +C F R ++ H+ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 94 LCSKDFSYKSSLIEH-KKLHQG 114
C K FS L H K++H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 65 CNLCSKEFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEHKKLHQGI---RYKCN 120
C +C K F +L H H G + Y C +C F K + H + H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 121 LCSKEFSRNCYLTEHMEQ 138
C K FSR +L H++Q
Sbjct: 70 SCGKGFSRPDHLNGHIKQ 87
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 92 CDLCSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQGI---RYKCD 147
C++C K F L HK H G + Y C +C F R ++ H+ H G Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 148 LCSKDFSYKSSLIEH-KKLHQG 168
C K FS L H K++H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 39/106 (36%), Gaps = 26/106 (24%)
Query: 119 CNLCSKEFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEHKKLHQGIRYKCNLCS 177
C +C K F +L H H G + Y C +C F K + H + H G
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS-------- 61
Query: 178 KEYFFKRNLTEHKKLHQGIRYNCDLCSKEFSRKDNLTDH-KKMHQG 222
G Y C C K FSR D+L H K++H G
Sbjct: 62 ----------------VGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 44/122 (36%), Gaps = 42/122 (34%)
Query: 588 CDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKDIPYEVTVKEESYEGDSINVE 646
C++C K F +L +H H G + Y C +C F RKD
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDR------------------- 50
Query: 647 ENNGNDAVTRDCLEFFKTEQNTTLGKLNKILHQDIRYKCDLCSKDFSRKDNLTEH-KEIH 705
+ + + ++GK Y C C K FSR D+L H K++H
Sbjct: 51 ------------MSYHVRSHDGSVGKP---------YICQSCGKGFSRPDHLNGHIKQVH 89
Query: 706 QG 707
G
Sbjct: 90 SG 91
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 505 YKCDLCSKEFSSKGNLTEHMKQHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCD 562
+ C C + F+ NL H + H R Y CD+C K F R+D+L +H+ IH + +KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 563 LCSKEFSRKDNLTEHKEIH 581
C K F + L HK +H
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCD 589
+ C C + F++ NL H+ H R Y CD+C K F R+D+L +H+ IH + +KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 590 LCSKKFSRKLNLTKHMKIH 608
C K F + L H +H
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 290 YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCD 347
+ C C + F++ NL H + H R Y CD+C K F R+D+L +H+ IH + +KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 348 LCSKKFSRKLNLTKHMKIH 366
C K F + L H +H
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 371 YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCD 428
+ C C + F++ NL H + H R Y CD+C K F R+D+L +H+ IH + +KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 429 LCSKKFSRKLNLTKHMKIH 447
C K F + L H +H
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDHKKIHQGIR-YKCN 66
+ C C + F++ YNL H++ H R Y C++C K F R+ +L DH+ IH + +KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 67 LCSKEFSRNCYLTEHMEQH 85
C K F ++ L H H
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQGIR-YKCD 93
+ C C + F++ YNL H++ H R Y C++C K F R +L +H H + +KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 94 LCSKDFSYKSSLIEHKKLH 112
C K F +L HK LH
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCD 320
+ C C + F++ NL H + H R Y CD+C K F R+ +L H +H + +KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 321 LCLKEFSRKDNLTEHKEIH 339
C K F + L HK +H
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCD 401
+ C C + F++ NL H + H R Y CD+C K F R+ +L H +H + +KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 402 LCLKEFSRKDNLTEHKEIH 420
C K F + L HK +H
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 171 YKCNLCSKEYFFKRNLTEHKKLHQGIR-YNCDLCSKEFSRKDNLTDHKKMHQGNLTKHMK 229
+ C C + + NL H++ H R Y CD+C K F R+D+L DH+ +H
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP---- 73
Query: 230 LHQGIRYKCDLCLKEFSRKDNLTEHKEIH 258
+KC C K F + L HK +H
Sbjct: 74 ------FKCQECGKGFCQSRTLAVHKTLH 96
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 236 YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCD 293
+ C C + F++ NL H+ H R Y CD+C K F R+ +L H IH + +KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 294 LCSKEFSRKGNLTKHMKLH 312
C K F + L H LH
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 398 YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCD 455
+ C C + F++ NL H+ H R Y CD+C K F R+ +L H IH + +KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 456 LCSKEFSRKGNLTKHMKLH 474
C K F + L H LH
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQGIR-YKCD 147
+ C C + F+ +L+ H++ H R Y C++C K F R +L +H H + +KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 148 LCSKDFSYKSSLIEHKKLH 166
C K F +L HK LH
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 117 YKCNLCSKEFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEHKKLHQGIR-YKCN 174
+ C C + F+++ L H H R Y CD+C K F + L +H+ +H + +KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 175 LCSKEYFFKRNLTEHKKLH 193
C K + R L HK LH
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCD 482
+ C C + F++ NL H + H R Y CD+C K F R+ +L H +H + +KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 483 LCLKEFSRKDNLTDRKI 499
C K F + L K
Sbjct: 78 ECGKGFCQSRTLAVHKT 94
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCD 616
+ C C + F++ NL H+ H R Y CD+C K F R+ +L H IH + +KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 617 LCSKEF 622
C K F
Sbjct: 78 ECGKGF 83
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 479 YKCDLCLKEFSRKDNL-TDRKIHQGIR-YKCDLCSKEFSSKGNLTEHMKQHQGIR-YKCD 535
+ C C + F++ NL + H R Y CD+C K F + +L +H H + +KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 536 LCSKEFSRKDNLTEHKEIH 554
C K F + L HK +H
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKD 626
+ C C + F++ NL H + H R Y CD+C K F R+D
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQD 59
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 673 LNKILHQDIR-YKCDLCSKDFSRKDNLTEHKEIH 705
+++ H D R Y CD+C K F R+D+L +H+ IH
Sbjct: 35 IHERTHTDERPYTCDICHKAFRRQDHLRDHRYIH 68
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 262 RYKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQG 314
RYKCD C K FS +L+KH + H G + YKCD C K F ++ +L H ++H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 343 RYKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQG 395
RYKCD C K FS +L+KH + H G + YKCD C K F ++ +L H ++H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 424 RYKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQG 476
RYKCD C K FS +L+KH + H G + YKCD C K F ++ +L H ++H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 558 RYKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQG 610
RYKCD C K FS +L++H+ H G + YKCD C K F ++ +L H ++H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 289 RYKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQG 341
RYKCD C K FS +L+KH + H G + YKCD C K F ++ +L H +H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 370 RYKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQG 422
RYKCD C K FS +L+KH + H G + YKCD C K F ++ +L H +H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 524 MKQHQGIRYKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQ 582
+Q + RYKCD C K FS +L++H+ H G + YKCD C K F ++ +L H +H
Sbjct: 11 WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Query: 583 G 583
G
Sbjct: 71 G 71
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 235 RYKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIHQG 287
RYKCD C K FS +L++H+ H G + YKCD C K F ++ +L H ++H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 504 RYKCDLCSKEFSSKGNLTEHMKQHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQG 556
RYKCD C K FS +L++H + H G + YKCD C K F ++ +L H +H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 136 MEQHQGIRYKCDLCSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEYFFKRNLTEHKKLHQ 194
+Q + RYKCD C K FS+ S L +H++ H G + YKC+ C K + + +L H ++H
Sbjct: 11 WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Query: 195 G 195
G
Sbjct: 71 G 71
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDHKKIHQG 60
YKCD C K FS +L+ H++ H G + YKC+ C K F ++ +L H ++H G
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 82 MEQHQGIRYKCDLCSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQ 140
+Q + RYKCD C K FS+ S L +H++ H G + YKC+ C K F + +L H H
Sbjct: 11 WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Query: 141 G 141
G
Sbjct: 71 G 71
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 451 RYKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTD-RKIHQG 502
RYKCD C K FS +L+KH + H G + YKCD C K F ++ +L ++H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 170 RYKCNLCSKEYFFKRNLTEHKKLHQGIR-YNCDLCSKEFSRKDNLTDHKKMHQGN 223
RYKC+ C K + +L++H++ H G + Y CD C K F ++ +L H ++H G+
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Query: 197 RYNCDLCSKEFSRKDNLTDHKKMHQGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTEHKE 256
RY CD C K FS +L+ H++ H G YKCD C K F ++ +L H
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKP----------YKCDECGKAFIQRSHLIGHHR 67
Query: 257 IHQG 260
+H G
Sbjct: 68 VHTG 71
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 35 RYKCNLCSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQG 87
RYKC+ C K FS +L+ H++ H G + YKC+ C K F + +L H H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 585 RYKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEF 622
RYKCD C K FS +L+KH + H G + YKCD C K F
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF 56
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 682 RYKCDLCSKDFSRKDNLTEHKEIHQG 707
RYKCD C K FS +L++H+ H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTG 43
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 534 CDL--CSKEFSRKDNLTEHKEIHQGIR-YKCDL--CSKEFSRKDNLTEHKEIHQGIR-YK 587
CD C+K +++ +L H H G + YKC C F+R D LT H H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 588 CDLCSKKFSRKLNLTKHMKIHQ 609
C +C++ FSR +L HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 238 CDL--CLKEFSRKDNLTEHKEIHQGIR-YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YK 291
CD C K +++ +L H H G + YKC C +F+R LT+H + H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 292 CDLCSKEFSRKGNLTKHMKLHQ 313
C +C++ FSR +L HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 319 CDL--CLKEFSRKDNLTEHKEIHQGIR-YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YK 372
CD C K +++ +L H H G + YKC C +F+R LT+H + H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 373 CDLCSKEFSRKGNLTKHMKLHQ 394
C +C++ FSR +L HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 400 CDL--CLKEFSRKDNLTEHKEIHQGIR-YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YK 453
CD C K +++ +L H H G + YKC C +F+R LT+H + H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 454 CDLCSKEFSRKGNLTKHMKLHQ 475
C +C++ FSR +L HMK HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 265 CDL--CSKKFSRKLNLTKHMKIHQGIR-YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YK 318
CD C+K +++ +L H++ H G + YKC C F+R LT+H + H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 319 CDLCLKEFSRKDNLTEHKEIHQ 340
C +C + FSR D+L H + HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 346 CDL--CSKKFSRKLNLTKHMKIHQGIR-YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YK 399
CD C+K +++ +L H++ H G + YKC C F+R LT+H + H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 400 CDLCLKEFSRKDNLTEHKEIHQ 421
C +C + FSR D+L H + HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 11 CDL--CSKEFSRKYNLTDHKKIHQGIR-YKCNL--CSKEFSRKYNLTDHKKIHQGIR-YK 64
CD C+K +++ +L H + H G + YKC C F+R LT H + H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 65 CNLCSKEFSRNCYLTEHMEQHQ 86
C +C++ FSR+ +L HM++HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 68 CSKEFSRNCYLTEHMEQHQGIR-YKCDL--CSKDFSYKSSLIEHKKLHQGIR-YKCNLCS 123
C+K ++++ +L H+ H G + YKC C F+ L H + H G + ++C +C+
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 124 KEFSRNCYLTEHMEQHQ 140
+ FSR+ +L HM++HQ
Sbjct: 83 RSFSRSDHLALHMKRHQ 99
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 454 CDL--CSKEFSRKGNLTKHMKLHQGIR-YKCDL--CLKEFSRKDNLTDR-KIHQGIR-YK 506
CD C+K +++ +L H++ H G + YKC C F+R D LT + H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 507 CDLCSKEFSSKGNLTEHMKQHQ 528
C +C++ FS +L HMK+HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 146 CDL--CSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEYFFKRN--LTEHKKLHQGIR-YN 199
CD C+K ++ S L H + H G + YKC ++ F R+ LT H + H G + +
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 200 CDLCSKEFSRKDNLTDHKKMHQ 221
C +C++ FSR D+L H K HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 561 CDL--CSKEFSRKDNLTEHKEIHQGIR-YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YK 614
CD C+K +++ +L H H G + YKC C +F+R LT+H + H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 615 CDLCSKEFSRKD 626
C +C++ FSR D
Sbjct: 78 CGVCNRSFSRSD 89
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 92 CDL--CSKDFSYKSSLIEHKKLHQGIR-YKCNL--CSKEFSRNCYLTEHMEQHQGIR-YK 145
CD C+K ++ S L H + H G + YKC C F+R+ LT H +H G + ++
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 146 CDLCSKDFSYKSSLIEHKKLHQ 167
C +C++ FS L H K HQ
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 13/87 (14%)
Query: 176 CSKEYFFKRNLTEHKKLHQGIR-YNCDL--CSKEFSRKDNLTDHKKMHQGNLTKHMKLHQ 232
C+K Y +L H + H G + Y C C F+R D LT H + H G
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP------- 75
Query: 233 GIRYKCDLCLKEFSRKDNLTEHKEIHQ 259
++C +C + FSR D+L H + HQ
Sbjct: 76 ---FQCGVCNRSFSRSDHLALHMKRHQ 99
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 532 YKCDL--CSKEFSRKDNLTEHKEIHQGIR-YKCDL--CSKEFSRKDNLTEHKEIHQGIR- 585
+ CD C K +++ +L H H G + Y CD C +F+R D LT H H G R
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 586 YKCDLCSKKFSRKLNLTKHMKIH 608
++C C + FSR +L HMK H
Sbjct: 67 FQCQKCDRAFSRSDHLALHMKRH 89
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 236 YKCDL--CLKEFSRKDNLTEHKEIHQGIR-YKCDL--CSKKFSRKLNLTKHMKIHQGIR- 289
+ CD C K +++ +L H H G + Y CD C KF+R LT+H + H G R
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 290 YKCDLCSKEFSRKGNLTKHMKLH 312
++C C + FSR +L HMK H
Sbjct: 67 FQCQKCDRAFSRSDHLALHMKRH 89
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 317 YKCDL--CLKEFSRKDNLTEHKEIHQGIR-YKCDL--CSKKFSRKLNLTKHMKIHQGIR- 370
+ CD C K +++ +L H H G + Y CD C KF+R LT+H + H G R
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 371 YKCDLCSKEFSRKGNLTKHMKLH 393
++C C + FSR +L HMK H
Sbjct: 67 FQCQKCDRAFSRSDHLALHMKRH 89
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 398 YKCDL--CLKEFSRKDNLTEHKEIHQGIR-YKCDL--CSKKFSRKLNLTKHMKIHQGIR- 451
+ CD C K +++ +L H H G + Y CD C KF+R LT+H + H G R
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 452 YKCDLCSKEFSRKGNLTKHMKLH 474
++C C + FSR +L HMK H
Sbjct: 67 FQCQKCDRAFSRSDHLALHMKRH 89
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 263 YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKCDL--CSKEFSRKGNLTKHMKLHQGIR- 316
+ CD C K +++ +L H++ H G + Y CD C +F+R LT+H + H G R
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 317 YKCDLCLKEFSRKDNLTEHKEIH 339
++C C + FSR D+L H + H
Sbjct: 67 FQCQKCDRAFSRSDHLALHMKRH 89
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 344 YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKCDL--CSKEFSRKGNLTKHMKLHQGIR- 397
+ CD C K +++ +L H++ H G + Y CD C +F+R LT+H + H G R
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 398 YKCDLCLKEFSRKDNLTEHKEIH 420
++C C + FSR D+L H + H
Sbjct: 67 FQCQKCDRAFSRSDHLALHMKRH 89
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 559 YKCDL--CSKEFSRKDNLTEHKEIHQGIR-YKCDL--CSKKFSRKLNLTKHMKIHQGIR- 612
+ CD C K +++ +L H H G + Y CD C KF+R LT+H + H G R
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 613 YKCDLCSKEFSRKD 626
++C C + FSR D
Sbjct: 67 FQCQKCDRAFSRSD 80
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 68 CSKEFSRNCYLTEHMEQHQGIR-YKCDL--CSKDFSYKSSLIEHKKLHQGIR-YKCNLCS 123
C K ++++ +L H+ H G + Y CD C F+ L H + H G R ++C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 124 KEFSRNCYLTEHMEQH 139
+ FSR+ +L HM++H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 9 YKCDL--CSKEFSRKYNLTDHKKIHQGIR-YKCNL--CSKEFSRKYNLTDHKKIHQGIR- 62
+ CD C K +++ +L H + H G + Y C+ C +F+R LT H + H G R
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 63 YKCNLCSKEFSRNCYLTEHMEQH 85
++C C + FSR+ +L HM++H
Sbjct: 67 FQCQKCDRAFSRSDHLALHMKRH 89
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 452 YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKCDL--CLKEFSRKDNLTDR-KIHQGIR- 504
+ CD C K +++ +L H++ H G + Y CD C +F+R D LT + H G R
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 505 YKCDLCSKEFSSKGNLTEHMKQH 527
++C C + FS +L HMK+H
Sbjct: 67 FQCQKCDRAFSRSDHLALHMKRH 89
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 176 CSKEYFFKRNLTEHKKLHQGIR-YNCDL--CSKEFSRKDNLTDHKKMHQGNLTKHMKLHQ 232
C K Y +L H + H G + Y+CD C +F+R D LT H + H G+
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP------- 66
Query: 233 GIRYKCDLCLKEFSRKDNLTEHKEIH 258
++C C + FSR D+L H + H
Sbjct: 67 ---FQCQKCDRAFSRSDHLALHMKRH 89
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 144 YKCDL--CSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEYFFKRN--LTEHKKLHQGIR- 197
+ CD C K ++ S L H + H G + Y C+ + F R+ LT H + H G R
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 198 YNCDLCSKEFSRKDNLTDHKKMH 220
+ C C + FSR D+L H K H
Sbjct: 67 FQCQKCDRAFSRSDHLALHMKRH 89
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 90 YKCDL--CSKDFSYKSSLIEHKKLHQGIR-YKCNL--CSKEFSRNCYLTEHMEQHQGIR- 143
+ CD C K ++ S L H + H G + Y C+ C +F+R+ LT H +H G R
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 144 YKCDLCSKDFSYKSSLIEHKKLH 166
++C C + FS L H K H
Sbjct: 67 FQCQKCDRAFSRSDHLALHMKRH 89
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 532 YKCDL--CSKEFSRKDNLTEHKEIHQGIR-YKCDL--CSKEFSRKDNLTEHKEIHQGIR- 585
+ CD C K +++ +L H H G + Y CD C +F+R D LT H H G R
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 586 YKCDLCSKKFSRKLNLTKHMKIH 608
++C C + FSR +L HMK H
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKRH 88
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 236 YKCDL--CLKEFSRKDNLTEHKEIHQGIR-YKCDL--CSKKFSRKLNLTKHMKIHQGIR- 289
+ CD C K +++ +L H H G + Y CD C KF+R LT+H + H G R
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 290 YKCDLCSKEFSRKGNLTKHMKLH 312
++C C + FSR +L HMK H
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKRH 88
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 317 YKCDL--CLKEFSRKDNLTEHKEIHQGIR-YKCDL--CSKKFSRKLNLTKHMKIHQGIR- 370
+ CD C K +++ +L H H G + Y CD C KF+R LT+H + H G R
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 371 YKCDLCSKEFSRKGNLTKHMKLH 393
++C C + FSR +L HMK H
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKRH 88
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 398 YKCDL--CLKEFSRKDNLTEHKEIHQGIR-YKCDL--CSKKFSRKLNLTKHMKIHQGIR- 451
+ CD C K +++ +L H H G + Y CD C KF+R LT+H + H G R
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 452 YKCDLCSKEFSRKGNLTKHMKLH 474
++C C + FSR +L HMK H
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKRH 88
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 263 YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKCDL--CSKEFSRKGNLTKHMKLHQGIR- 316
+ CD C K +++ +L H++ H G + Y CD C +F+R LT+H + H G R
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 317 YKCDLCLKEFSRKDNLTEHKEIH 339
++C C + FSR D+L H + H
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKRH 88
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 344 YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKCDL--CSKEFSRKGNLTKHMKLHQGIR- 397
+ CD C K +++ +L H++ H G + Y CD C +F+R LT+H + H G R
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 398 YKCDLCLKEFSRKDNLTEHKEIH 420
++C C + FSR D+L H + H
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKRH 88
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 68 CSKEFSRNCYLTEHMEQHQGIR-YKCDL--CSKDFSYKSSLIEHKKLHQGIR-YKCNLCS 123
C K ++++ +L H+ H G + Y CD C F+ L H + H G R ++C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 124 KEFSRNCYLTEHMEQH 139
+ FSR+ +L HM++H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 559 YKCDL--CSKEFSRKDNLTEHKEIHQGIR-YKCDL--CSKKFSRKLNLTKHMKIHQGIR- 612
+ CD C K +++ +L H H G + Y CD C KF+R LT+H + H G R
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 613 YKCDLCSKEFSRKD 626
++C C + FSR D
Sbjct: 66 FQCQKCDRAFSRSD 79
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 9 YKCDL--CSKEFSRKYNLTDHKKIHQGIR-YKCNL--CSKEFSRKYNLTDHKKIHQGIR- 62
+ CD C K +++ +L H + H G + Y C+ C +F+R LT H + H G R
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 63 YKCNLCSKEFSRNCYLTEHMEQH 85
++C C + FSR+ +L HM++H
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKRH 88
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 452 YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKCDL--CLKEFSRKDNLTDR-KIHQGIR- 504
+ CD C K +++ +L H++ H G + Y CD C +F+R D LT + H G R
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 505 YKCDLCSKEFSSKGNLTEHMKQH 527
++C C + FS +L HMK+H
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKRH 88
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 176 CSKEYFFKRNLTEHKKLHQGIR-YNCDL--CSKEFSRKDNLTDHKKMHQGNLTKHMKLHQ 232
C K Y +L H + H G + Y+CD C +F+R D LT H + H G+
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP------- 65
Query: 233 GIRYKCDLCLKEFSRKDNLTEHKEIH 258
++C C + FSR D+L H + H
Sbjct: 66 ---FQCQKCDRAFSRSDHLALHMKRH 88
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 144 YKCDL--CSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEYFFKRN--LTEHKKLHQGIR- 197
+ CD C K ++ S L H + H G + Y C+ + F R+ LT H + H G R
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 198 YNCDLCSKEFSRKDNLTDHKKMH 220
+ C C + FSR D+L H K H
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKRH 88
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 90 YKCDL--CSKDFSYKSSLIEHKKLHQGIR-YKCNL--CSKEFSRNCYLTEHMEQHQGIR- 143
+ CD C K ++ S L H + H G + Y C+ C +F+R+ LT H +H G R
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 144 YKCDLCSKDFSYKSSLIEHKKLH 166
++C C + FS L H K H
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKRH 88
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 21/162 (12%)
Query: 235 RYKCDL--CLKEFSRKDNLTEHKEIHQGIR-YKC--DLCSKKFSRKLNLTKHMKIHQGIR 289
RY C C +++ L H H G + + C + C K F+ +LT+H H G +
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 290 -YKCDL--CSKEFSRKGNLTKHMKLHQGIR---YKCDL--CLKEFSRKDNLTEHKEIH-Q 340
+ CD C F+ K N+ KH I+ Y C C K F + + L H+ H Q
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ 131
Query: 341 GIRYKC--DLCSKKFSRKLNLTKHMKIHQGIRYKC---DLCS 377
+ Y+C + C K+FS L +H K+H G Y C D CS
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCS 171
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 21/162 (12%)
Query: 316 RYKCDL--CLKEFSRKDNLTEHKEIHQGIR-YKC--DLCSKKFSRKLNLTKHMKIHQGIR 370
RY C C +++ L H H G + + C + C K F+ +LT+H H G +
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 371 -YKCDL--CSKEFSRKGNLTKHMKLHQGIR---YKCDL--CLKEFSRKDNLTEHKEIH-Q 421
+ CD C F+ K N+ KH I+ Y C C K F + + L H+ H Q
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ 131
Query: 422 GIRYKC--DLCSKKFSRKLNLTKHMKIHQGIRYKC---DLCS 458
+ Y+C + C K+FS L +H K+H G Y C D CS
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCS 171
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 22/162 (13%)
Query: 451 RYKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKC--DLCLKEFSRKDNLTDRKI-HQGIR 504
RY C C +++ L H+ H G + + C + C K F+ +LT + H G +
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 505 -YKCDL--CSKEFSSKGNLTEHMKQHQGIR---YKCDL--CSKEFSRKDNLTEHKEIH-Q 555
+ CD C F++K N+ +H + I+ Y C C K F + + L H+ H Q
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ 131
Query: 556 GIRYKC--DLCSKEFSRKDNLTEHKEIHQGIRYKC---DLCS 592
+ Y+C + C K FS L H+++H G Y C D CS
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCS 171
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 510 CSKEFSSKGNLTEHMKQHQGIR-YKCDL--CSKEFSRKDNLTEHKEIHQGIR---YKCDL 563
C K F+S +LT H H G + + CD C F+ K N+ +H I+ Y C
Sbjct: 50 CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHF 109
Query: 564 --CSKEFSRKDNLTEHKEIH-QGIRYKC--DLCSKKFSRKLNLTKHMKIHQGIRYKC--- 615
C K F + + L H+ H Q + Y+C + C K+FS L +H K+H G Y C
Sbjct: 110 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKD 167
Query: 616 DLCS 619
D CS
Sbjct: 168 DSCS 171
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 69/155 (44%), Gaps = 18/155 (11%)
Query: 343 RYKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKC--DLCSKEFSRKGNLTKHMKLHQGIR 397
RY C C +++ L H+ H G + + C + C K F+ +LT+H H G +
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 398 -YKCDL--CLKEFSRKDNLTEHKEIHQGIR---YKCDL--CSKKFSRKLNLTKHMKIH-Q 448
+ CD C F+ K N+ +H I+ Y C C K F + L H H Q
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ 131
Query: 449 GIRYKC--DLCSKEFSRKGNLTKHMKLHQGIRYKC 481
+ Y+C + C K FS L +H K+H G Y C
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPC 164
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 17/142 (11%)
Query: 14 CSKEFSRKYNLTDHKKIHQGIR-YKCNL--CSKEFSRKYNLTDHKKIHQGIR---YKCNL 67
C K F+ ++LT H H G + + C+ C F+ K N+ H I+ Y C+
Sbjct: 50 CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHF 109
Query: 68 --CSKEFSRNCYLTEHMEQH-QGIRYKC--DLCSKDFSYKSSLIEHKKLHQGIRYK---- 118
C K F ++ L H H Q + Y+C + C K FS S L H+K+H G K
Sbjct: 110 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDS 169
Query: 119 CNLCSKEFSRNCYLTEHMEQHQ 140
C+ K ++ YL E HQ
Sbjct: 170 CSFVGKTWTL--YLKHVAECHQ 189
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 56/132 (42%), Gaps = 21/132 (15%)
Query: 176 CSKEYFFKRNLTEHKKLHQGIRYNCDLCSKEFSRKDNLTDHKKMHQGNLTKHMKLHQGIR 235
C K + +LT H H G K F+ + D + + N+ KH I+
Sbjct: 50 CEKGFTSLHHLTRHSLTHTG--------EKNFTCDSDGCDLRFTTKANMKKHFNRFHNIK 101
Query: 236 ---YKCDL--CLKEFSRKDNLTEHKEIH-QGIRYKC--DLCSKKFSRKLNLTKHMKIHQG 287
Y C C K F + + L H+ H Q + Y+C + C K+FS L +H K+H G
Sbjct: 102 ICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
Query: 288 IRYKC---DLCS 296
Y C D CS
Sbjct: 162 --YPCKKDDSCS 171
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 19/154 (12%)
Query: 14 CSKEFSRKYNLTDHKKIHQGIR-YKC--NLCSKEFSRKYNLTDHKKIHQGIR-YKCNL-- 67
C +++ + L H H G + + C C K F+ ++LT H H G + + C+
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 68 CSKEFSRNCYLTEHMEQHQGIR---YKCDL--CSKDFSYKSSLIEHKKLH-QGIRYKC-- 119
C F+ + +H + I+ Y C C K F + L H+ H Q + Y+C
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 120 NLCSKEFSRNCYLTEHMEQHQGIRYKC---DLCS 150
C K FS L H + H G Y C D CS
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCS 171
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 290 YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIH 339
Y C + C + FSR LT+H+++H G + ++C +C++ FSR D+LT H H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 371 YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIH 420
Y C + C + FSR LT+H+++H G + ++C +C++ FSR D+LT H H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 532 YKCDL--CSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKEFSRKDNLTEHKEIH 581
Y C + C + FSR D LT H IH G + ++C +C + FSR D+LT H H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 3/53 (5%)
Query: 263 YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLH 312
Y C + C ++FSR LT+H++IH G + ++C +C + FSR +LT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 3/53 (5%)
Query: 344 YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLH 393
Y C + C ++FSR LT+H++IH G + ++C +C + FSR +LT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 3/53 (5%)
Query: 425 YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLH 474
Y C + C ++FSR LT+H++IH G + ++C +C + FSR +LT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 559 YKCDL--CSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIH 608
Y C + C + FSR D LT H IH G + ++C +C + FSR +LT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 236 YKCDL--CLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIH 285
Y C + C + FSR D LT H IH G + ++C +C + FSR +LT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 317 YKCDL--CLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIH 366
Y C + C + FSR D LT H IH G + ++C +C + FSR +LT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 398 YKCDL--CLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIH 447
Y C + C + FSR D LT H IH G + ++C +C + FSR +LT H++ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 43.1 bits (100), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 452 YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLT 495
Y C + C + FSR LT+H+++H G + ++C +C++ FSR D+LT
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 66
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 41 CSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRNCYLTEHMEQH 85
C + FSR LT H +IH G + ++C +C + FSR+ +LT H+ H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 203 CSKEFSRKDNLTDHKKMHQGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTEHKEIH 258
C + FSR D LT H ++H G ++C +C++ FSR D+LT H H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKP----------FQCRICMRNFSRSDHLTTHIRTH 72
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 492 DNLTDRKIHQGIRYKCDL--CSKEFSSKGNLTEHMKQHQGIR-YKCDLCSKEFSRKDNLT 548
+NL + + + Y C + C + FS LT H++ H G + ++C +C + FSR D+LT
Sbjct: 7 NNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 66
Query: 549 EHKEIH 554
H H
Sbjct: 67 THIRTH 72
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 9 YKCDL--CSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDHKKIH 58
Y C + C + FSR LT H +IH G + ++C +C + FSR +LT H + H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 586 YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKD 626
Y C + C ++FSR LT+H++IH G + ++C +C + FSR D
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSD 63
Score = 37.7 bits (86), Expect = 0.033, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 90 YKCDL--CSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEFSRNCYLTEHMEQH 139
Y C + C + FS L H ++H G + ++C +C + FSR+ +LT H+ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 34.7 bits (78), Expect = 0.26, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 68 CSKEFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEHKKLH 112
C + FSR+ LT H+ H G + ++C +C ++FS L H + H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 34.7 bits (78), Expect = 0.26, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 122 CSKEFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEHKKLH 166
C + FSR+ LT H+ H G + ++C +C ++FS L H + H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 30.4 bits (67), Expect = 5.7, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 144 YKCDL--CSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEYFFKRNLTEHKKLH 193
Y C + C + FS L H ++H G + ++C +C + + +LT H + H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDHKKIH 58
Y C C K FSR L H+++H G + YKC C K FS+ L +H++IH
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKEFSRKDNLTEHKEIH 581
Y C C K FSR L +H+ +H G + YKC C K FS+ L H+ IH
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 63 YKCNLCSKEFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEHKKLH 112
Y C C K FSR+ L +H H G + YKC C K FS S LI H+++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 117 YKCNLCSKEFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEHKKLH 166
Y C C K FSR+ L +H H G + YKC C K FS S LI H+++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIH 608
Y C C K FSR L +H+ +H G + YKC C K FS+ L H +IH
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 236 YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIH 285
Y C C K FSR L +H+ +H G + YKC C K FS+ L H +IH
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 317 YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIH 366
Y C C K FSR L +H+ +H G + YKC C K FS+ L H +IH
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 398 YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKIH 447
Y C C K FSR L +H+ +H G + YKC C K FS+ L H +IH
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLH 312
Y C C K FSR L +H ++H G + YKC C K FS+ L H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLH 393
Y C C K FSR L +H ++H G + YKC C K FS+ L H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLH 474
Y C C K FSR L +H ++H G + YKC C K FS+ L H ++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 290 YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIH 339
Y C C K FSR L +H ++H G + YKC C K FS+ L H+ IH
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 371 YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIH 420
Y C C K FSR L +H ++H G + YKC C K FS+ L H+ IH
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEFSRNCYLTEHMEQH 139
Y C C K FS S L++H+++H G + YKC C K FS+N L H H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRNCYLTEHMEQH 85
Y C C K FSR L H+++H G + YKC C K FS+N L H H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 198 YNCDLCSKEFSRKDNLTDHKKMHQGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTEHKEI 257
Y C C K FSR L H+++H G YKC C K FS+ L H+ I
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKP----------YKCLECGKAFSQNSGLINHQRI 64
Query: 258 H 258
H
Sbjct: 65 H 65
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 505 YKCDLCSKEFSSKGNLTEHMKQHQGIR-YKCDLCSKEFSRKDNLTEHKEIH 554
Y C C K FS L +H + H G + YKC C K FS+ L H+ IH
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEYFFKRNLTEHKKLH 193
Y C C K FS S L++H+++H G + YKC C K + L H+++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 452 YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTD-RKIH 500
Y C C K FSR L +H ++H G + YKC C K FS+ L + ++IH
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 171 YKCNLCSKEYFFKRNLTEHKKLHQGIR-YNCDLCSKEFSRKDNLTDHKKMH 220
Y C C K + L +H+++H G + Y C C K FS+ L +H+++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 36.2 bits (82), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKD 626
Y C C K FSR L +H ++H G + YKC C K FS+
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNS 56
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 479 YKCDLCLKEFSRKDNLTD-RKIHQGIR-YKCDLCSKEFSSKGNLTEHMKQH 527
Y C C K FSR L +++H G + YKC C K FS L H + H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKEFSRKDNLTEHKEI 580
++C +C + FSR D+LT H H G + + CD+C ++F+R D H++I
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 290 YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEI 338
++C +C + FSR +LT H++ H G + + CD+C ++F+R D H++I
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 371 YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEI 419
++C +C + FSR +LT H++ H G + + CD+C ++F+R D H++I
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 505 YKCDLCSKEFSSKGNLTEHMKQHQGIR-YKCDLCSKEFSRKDNLTEHKEI 553
++C +C + FS +LT H++ H G + + CD+C ++F+R D H++I
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 236 YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKI 284
++C +C++ FSR D+LT H H G + + CD+C +KF+R +H I
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 317 YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKI 365
++C +C++ FSR D+LT H H G + + CD+C +KF+R +H I
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 398 YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKI 446
++C +C++ FSR D+LT H H G + + CD+C +KF+R +H I
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 37/55 (67%), Gaps = 4/55 (7%)
Query: 452 YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTDRKIHQGIRY 505
++C +C + FSR +LT H++ H G + + CD+C ++F+R D +RK H+ I++
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSD---ERKRHRDIQH 55
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKI 607
++C +C + FSR D+LT H H G + + CD+C +KF+R +H I
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 10/60 (16%)
Query: 198 YNCDLCSKEFSRKDNLTDHKKMHQGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTEHKEI 257
+ C +C + FSR D+LT H + H G + CD+C ++F+R D H++I
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKP----------FACDICGRKFARSDERKRHRDI 53
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKD 626
++C +C + FSR +LT H++ H G + + CD+C ++F+R D
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSD 45
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDHKKIHQGIRY 63
++C +C + FSR +LT H + H G + + C++C ++F+R +D +K H+ I++
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR----SDERKRHRDIQH 55
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 117 YKCNLCSKEFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEHKKLHQGIRYKCN- 174
++C +C + FSR+ +LT H+ H G + + CD+C + F+ H+ + + +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDK 63
Query: 175 ---LCSKEYFFKRNLTEHKKL 192
L SK Y + + KKL
Sbjct: 64 VEELLSKNYHLENEVARLKKL 84
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 63 YKCNLCSKEFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEHKKL 111
++C +C + FSR+ +LT H+ H G + + CD+C + F+ H+ +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRN 75
++C +C + FSR +LT H + H G + + C++C ++F+R+
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS 44
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 171 YKCNLCSKEYFFKRNLTEHKKLHQGIR-YNCDLCSKEFSRKDNLTDHKKM 219
++C +C + + +LT H + H G + + CD+C ++F+R D H+ +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQG 707
++C +C ++FSR D+LT H H G
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTG 28
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 291 KCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDL--CLKEFSRKDNLTEHKEIHQGIR-YKC 346
+C K F K L H+++H G + + C C K F+R +NL HK H G + +KC
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 347 DL--CSKKFSRKLNLTKHMKIH 366
+ C ++F+ + KHM +H
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVH 145
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 372 KCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDL--CLKEFSRKDNLTEHKEIHQGIR-YKC 427
+C K F K L H+++H G + + C C K F+R +NL HK H G + +KC
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 428 DL--CSKKFSRKLNLTKHMKIH 447
+ C ++F+ + KHM +H
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVH 145
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 16/115 (13%)
Query: 510 CSKEFSSKGNLTEHM--------KQHQGIRY--KCDLCSKEFSRKDNLTEHKEIHQGIR- 558
C + FS+ L H+ +Q+ + Y +C K F K L H +H G +
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 559 YKCDL--CSKEFSRKDNLTEHKEIHQGIR-YKCDL--CSKKFSRKLNLTKHMKIH 608
+ C C K F+R +NL HK H G + +KC+ C ++F+ + KHM +H
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 10 KCDLCSKEFSRKYNLTDHKKIHQGIR-YKCNL--CSKEFSRKYNLTDHKKIHQGIR-YKC 65
+C K F KY L +H ++H G + + C C K F+R NL HK+ H G + +KC
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 66 NL--CSKEFSRNCYLTEHMEQH 85
C + F+ + +HM H
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVH 145
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 224 LTKHMKLHQGIR-YKCDL--CLKEFSRKDNLTEHKEIHQGIR-YKCDL--CSKKFSRKLN 277
L H+++H G + + C C K F+R +NL HK H G + +KC+ C ++F+ +
Sbjct: 78 LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSD 137
Query: 278 LTKHMKIH 285
KHM +H
Sbjct: 138 RKKHMHVH 145
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 506 KCDLCSKEFSSKGNLTEHMKQHQGIR-YKCDL--CSKEFSRKDNLTEHKEIHQGIR-YKC 561
+C K F +K L H++ H G + + C C K F+R +NL HK H G + +KC
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 562 DL--CSKEFSRKDNLTEHKEIH 581
+ C + F+ + +H +H
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVH 145
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 426 KCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKC 481
+C K F K L H+++H G + + C C K F+R NL H + H G + +KC
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 482 DL--CLKEFSRKDNLTDRKIH 500
+ C + F+ N +DRK H
Sbjct: 124 EFEGCDRRFA---NSSDRKKH 141
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 399 KCDLCLKEFSRKDNLTEHKEIHQGIR-YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKC 454
+C K F K L H +H G + + C C K F+R NL H + H G + +KC
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 455 DL--CSKEFSRKGNLTKHMKLH 474
+ C + F+ + KHM +H
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVH 145
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 264 KCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKC 319
+C K F K L H+++H G + + C C K F+R NL H + H G + +KC
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 320 DL--CLKEFSRKDNLTEHKEIH 339
+ C + F+ + +H +H
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVH 145
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 345 KCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKC 400
+C K F K L H+++H G + + C C K F+R NL H + H G + +KC
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 401 DL--CLKEFSRKDNLTEHKEIH 420
+ C + F+ + +H +H
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVH 145
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 25/125 (20%)
Query: 149 CSKDFSYKSSLIEHKKLHQ--GIRYKCNLC--------SKEYFFKRNLTEHKKLHQGIR- 197
C + FS L+ H + G ++C K + K L H ++H G +
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 198 YNCDL--CSKEFSRKDNLTDHKKMHQGNLTKHMKLHQGIRYKCDL--CLKEFSRKDNLTE 253
+ C C K F+R +NL HK+ H G +KC+ C + F+ + +
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKP----------FKCEFEGCDRRFANSSDRKK 140
Query: 254 HKEIH 258
H +H
Sbjct: 141 HMHVH 145
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 560 KCDLCSKEFSRKDNLTEHKEIHQGIR-YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKC 615
+C K F K L H +H G + + C C K F+R NL H + H G + +KC
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 616 DL--CSKEFS 623
+ C + F+
Sbjct: 124 EFEGCDRRFA 133
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 16/115 (13%)
Query: 68 CSKEFSRNCYLTEHM--------EQHQGIRY--KCDLCSKDFSYKSSLIEHKKLHQGIR- 116
C + FS L H+ EQ+ + Y +C K F K L+ H ++H G +
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 117 YKCNL--CSKEFSRNCYLTEHMEQHQGIR-YKCDL--CSKDFSYKSSLIEHKKLH 166
+ C C K F+R+ L H H G + +KC+ C + F+ S +H +H
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 122 CSKEFSRNCYLTEHM--------EQHQGIRY--KCDLCSKDFSYKSSLIEHKKLHQGIR- 170
C + FS L H+ EQ+ + Y +C K F K L+ H ++H G +
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 171 YKCNL--CSKEYFFKRNLTEHKKLHQGIR-YNCDL--CSKEFSRKDNLTDHKKMH 220
+ C C K + NL HK+ H G + + C+ C + F+ + H +H
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKEFSRKDNLTEHKE-IHQG 583
+ C++C++ F+R+++L H H + Y C LC++ F+R+D L H + IH G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 290 YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKE-IHQG 341
+ C++C++ F+R+ +L +H + H + Y C LC + F+R+D L H + IH G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 371 YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKE-IHQG 422
+ C++C++ F+R+ +L +H + H + Y C LC + F+R+D L H + IH G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 505 YKCDLCSKEFSSKGNLTEHMKQHQGIR-YKCDLCSKEFSRKDNLTEHKE-IHQG 556
+ C++C++ F+ + +L H + H + Y C LC++ F+R+D L H + IH G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHM-KLHQG 314
+ C++C++ F+R+ +L +H + H + Y C LC++ F+R+ L +H K+H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHM-KLHQG 395
+ C++C++ F+R+ +L +H + H + Y C LC++ F+R+ L +H K+H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHM-KLHQG 476
+ C++C++ F+R+ +L +H + H + Y C LC++ F+R+ L +H K+H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHM-KIHQG 610
+ C++C++ F+R+++L H H + Y C LC++ F+R+ L +H KIH G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 452 YKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLT--DRKIHQG 502
+ C++C++ F+R+ +L +H + H + Y C LC + F+R+D L +KIH G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 236 YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHM-KIHQG 287
+ C++C + F+R+++L H H + Y C LC++ F+R+ L +H KIH G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 171 YKCNLCSKEYFFKRNLTEHKKLHQGIR-YNCDLCSKEFSRKDNLTDH-KKMHQGNL 224
+ C +C++ + + +L H + H + Y C LC++ F+R+D L H +K+H GNL
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRKYNLTDH-KKIHQG 60
+ C++C++ F+R+ +L H + H + Y C LC++ F+R+ L H +KIH G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKDI 627
+ C++C++ F+R+ +L +H + H + Y C LC++ F+R+D+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDL 45
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Query: 198 YNCDLCSKEFSRKDNLTDHKKMHQGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTEHKE- 256
+ C++C++ F+R+++L H + H Y C LC + F+R+D L H +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKP----------YPCGLCNRAFTRRDLLIRHAQK 52
Query: 257 IHQG 260
IH G
Sbjct: 53 IHSG 56
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 117 YKCNLCSKEFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEH-KKLHQG 168
+ C +C++ F+R +L H H + Y C LC++ F+ + LI H +K+H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRNCYLTEHMEQ-HQG 87
+ C +C++ F+R+ +L H + H + Y C LC++ F+R L H ++ H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEFSRNCYLTEHMEQ-HQG 141
+ C++C++ F+ + L H + H + Y C LC++ F+R L H ++ H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 73/153 (47%), Gaps = 28/153 (18%)
Query: 401 DLCLKEFSRKDNLTEH---KEIHQGIR--YKCDL--CSKK---FSRKLNLTKHMKIHQGI 450
D C +EF ++ L H + IH G R + C CS++ F + L HM+ H G
Sbjct: 7 DGCSQEFDSQEQLVHHINSEHIH-GERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 65
Query: 451 R-YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKC--DLCLKEFSRKDNLTDRKIHQGI- 503
+ +KC C K +SR NL H++ H G + Y C + C K FS N +DR HQ
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFS---NASDRAKHQNRT 122
Query: 504 -----RYKCDL--CSKEFSSKGNLTEHMKQHQG 529
Y C L C+K ++ +L +H+K G
Sbjct: 123 HSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 13/114 (11%)
Query: 510 CSKE---FSSKGNLTEHMKQHQGIR-YKCDL--CSKEFSRKDNLTEHKEIHQGIR-YKCD 562
CS+E F ++ L HM++H G + +KC C K +SR +NL H H G + Y C+
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE 101
Query: 563 --LCSKEFSRKDNLTEHK-EIHQGIR-YKCDL--CSKKFSRKLNLTKHMKIHQG 610
CSK FS + +H+ H + Y C L C+K+++ +L KH+K G
Sbjct: 102 HEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 21/150 (14%)
Query: 239 DLCLKEFSRKDNLTEH---KEIHQGIR--YKCDL--CSKK---FSRKLNLTKHMKIHQGI 288
D C +EF ++ L H + IH G R + C CS++ F + L HM+ H G
Sbjct: 7 DGCSQEFDSQEQLVHHINSEHIH-GERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 65
Query: 289 R-YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKC--DLCLKEFSRKDNLTEHK-EIHQG 341
+ +KC C K +SR NL H++ H G + Y C + C K FS + +H+ H
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN 125
Query: 342 IR-YKCDL--CSKKFSRKLNLTKHMKIHQG 368
+ Y C L C+K+++ +L KH+K G
Sbjct: 126 EKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 21/150 (14%)
Query: 320 DLCLKEFSRKDNLTEH---KEIHQGIR--YKCDL--CSKK---FSRKLNLTKHMKIHQGI 369
D C +EF ++ L H + IH G R + C CS++ F + L HM+ H G
Sbjct: 7 DGCSQEFDSQEQLVHHINSEHIH-GERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 65
Query: 370 R-YKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKC--DLCLKEFSRKDNLTEHK-EIHQG 422
+ +KC C K +SR NL H++ H G + Y C + C K FS + +H+ H
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN 125
Query: 423 IR-YKCDL--CSKKFSRKLNLTKHMKIHQG 449
+ Y C L C+K+++ +L KH+K G
Sbjct: 126 EKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 147 DLCSKDFSYKSSLIEH---KKLHQGIR--YKCNL--CSKEY-FFKRN--LTEHKKLHQGI 196
D CS++F + L+ H + +H G R + C+ CS+E FK L H + H G
Sbjct: 7 DGCSQEFDSQEQLVHHINSEHIH-GERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 65
Query: 197 R-YNCDL--CSKEFSRKDNLTDHKKMHQGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTE 253
+ + C C K +SR +NL H + H G +M H+G C K FS + +
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE-KPYMCEHEG-------CSKAFSNASDRAK 117
Query: 254 HK-EIHQGIR-YKCDL--CSKKFSRKLNLTKHMKIHQG 287
H+ H + Y C L C+K+++ +L KH+K G
Sbjct: 118 HQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 33.5 bits (75), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 52/105 (49%), Gaps = 17/105 (16%)
Query: 535 DLCSKEFSRKDNLTEH---KEIHQGIR--YKCDL--CSKE---FSRKDNLTEHKEIHQGI 584
D CS+EF ++ L H + IH G R + C CS+E F + L H H G
Sbjct: 7 DGCSQEFDSQEQLVHHINSEHIH-GERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 65
Query: 585 R-YKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKC--DLCSKEFS 623
+ +KC C K +SR NL H++ H G + Y C + CSK FS
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFS 110
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 68/147 (46%), Gaps = 19/147 (12%)
Query: 68 CSKEFSRNCYLTEHM--EQHQGIR--YKCDL--CSKD---FSYKSSLIEHKKLHQGIR-Y 117
CS+EF L H+ E G R + C CS++ F + L+ H + H G + +
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 118 KCNL--CSKEFSRNCYLTEHMEQHQGIR-YKC--DLCSKDFSYKSSLIEHK-KLHQGIR- 170
KC C K +SR L H+ H G + Y C + CSK FS S +H+ + H +
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128
Query: 171 YKCNL--CSKEYFFKRNLTEHKKLHQG 195
Y C L C+K Y +L +H K G
Sbjct: 129 YVCKLPGCTKRYTDPSSLRKHVKTVHG 155
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 290 YKCDLCSKEFSRKGNLTKHMKLH--QGIR-YKCDLCLKEFSRKDNLTEHKEI 338
Y+C +CS+ ++ N +H + ++ Y C C KEF+RKDN+T H +I
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 371 YKCDLCSKEFSRKGNLTKHMKLH--QGIR-YKCDLCLKEFSRKDNLTEHKEI 419
Y+C +CS+ ++ N +H + ++ Y C C KEF+RKDN+T H +I
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 505 YKCDLCSKEFSSKGNLTEH--MKQHQGIR-YKCDLCSKEFSRKDNLTEHKEI 553
Y+C +CS+ ++ N H + ++ Y C C KEF+RKDN+T H +I
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 9/55 (16%)
Query: 532 YKCDLCSKEFSRKDN-----LTEHKEIHQGIR-YKCDLCSKEFSRKDNLTEHKEI 580
Y+C +CS+ ++ N +T HK + ++ Y C C KEF+RKDN+T H +I
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHK---RNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
Query: 198 YNCDLCSKEFSRKDNLTDH-KKMHQGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTEHKE 256
Y C +CS+ ++ N H H+ N+ Y C C KEF+RKDN+T H +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKV---------YPCPFCFKEFTRKDNMTAHVK 61
Query: 257 I 257
I
Sbjct: 62 I 62
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 452 YKCDLCSKEFSRKGNLTKHMKLH--QGIR-YKCDLCLKEFSRKDNLT 495
Y+C +CS+ ++ N +H + ++ Y C C KEF+RKDN+T
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMT 57
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIH--QGIR-YKCDLCSKEFSRKGNLTKHMKL 473
Y+C +CS+ ++ N +H + ++ Y C C KEF+RK N+T H+K+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 36.6 bits (83), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 9/55 (16%)
Query: 559 YKCDLCSKEFSRKDN-----LTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKI 607
Y+C +CS+ ++ N +T HK + ++ Y C C K+F+RK N+T H+KI
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHK---RNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 9 YKCDLCSKEFSRKYN-----LTDHKKIHQGIRYKCNLCSKEFSRKYNLTDHKKI 57
Y+C +CS+ ++ N +T HK+ Y C C KEF+RK N+T H KI
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKR--NVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 19/74 (25%)
Query: 298 EFSRKGNLTKHMKLHQGIRYKCDLCLKEFSRKDN-----LTEHKEIHQGIR-YKCDLCSK 351
EF+++G T Y+C +C + ++ N +T HK + ++ Y C C K
Sbjct: 2 EFTKEGEHT----------YRCKVCSRVYTHISNFCRHYVTSHK---RNVKVYPCPFCFK 48
Query: 352 KFSRKLNLTKHMKI 365
+F+RK N+T H+KI
Sbjct: 49 EFTRKDNMTAHVKI 62
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 9/55 (16%)
Query: 236 YKCDLCLKEFSRKDN-----LTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMKI 284
Y+C +C + ++ N +T HK + ++ Y C C K+F+RK N+T H+KI
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHK---RNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEI 704
Y C C K+F+RKDN+T H +I
Sbjct: 41 YPCPFCFKEFTRKDNMTAHVKI 62
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIH--QGIR-YKCDLCSKEFSRKD 626
Y+C +CS+ ++ N +H + ++ Y C C KEF+RKD
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKD 54
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLH--QGIR-YKCNLCSKEYFFKRNLTEHKKL 192
Y+C +CS+ +++ S+ H + ++ Y C C KE+ K N+T H K+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 262 RYKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMK 310
+Y C+ C + + L KH++ H +R Y C C+ F KGNLTKHMK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 343 RYKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMK 391
+Y C+ C + + L KH++ H +R Y C C+ F KGNLTKHMK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 424 RYKCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMK 472
+Y C+ C + + L KH++ H +R Y C C+ F KGNLTKHMK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 558 RYKCDLCSKEFSRKDNLTEHKEIHQGIR-YKCDLCSKKFSRKLNLTKHMK 606
+Y C+ C + L +H H +R Y C C+ F K NLTKHMK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 289 RYKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEH 335
+Y C+ C + L KH++ H +R Y C C F K NLT+H
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 370 RYKCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEH 416
+Y C+ C + L KH++ H +R Y C C F K NLT+H
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 504 RYKCDLCSKEFSSKGNLTEHMKQHQGIR-YKCDLCSKEFSRKDNLTEH 550
+Y C+ C L +H++ H +R Y C C+ F K NLT+H
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 25/76 (32%)
Query: 451 RYKCDLCSKEFSRKGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTDRKIHQGIRYKCDLC 510
+Y C+ C + L KH++ H +R Y C C
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVR-------------------------PYHCTYC 35
Query: 511 SKEFSSKGNLTEHMKQ 526
+ F +KGNLT+HMK
Sbjct: 36 NFSFKTKGNLTKHMKS 51
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 682 RYKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
RYKC+ C K FSR L++H++IH G + S + G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG 46
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 35 RYKCNLCSKEFSRKYNLTDHKKIHQG 60
RYKCN C K FSR L+ H+KIH G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 262 RYKCDLCSKKFSRKLNLTKHMKIHQG 287
RYKC+ C K FSR L++H KIH G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 343 RYKCDLCSKKFSRKLNLTKHMKIHQG 368
RYKC+ C K FSR L++H KIH G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 424 RYKCDLCSKKFSRKLNLTKHMKIHQG 449
RYKC+ C K FSR L++H KIH G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 585 RYKCDLCSKKFSRKLNLTKHMKIHQG 610
RYKC+ C K FSR L++H KIH G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 531 RYKCDLCSKEFSRKDNLTEHKEIHQG 556
RYKC+ C K FSR L++H++IH G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 558 RYKCDLCSKEFSRKDNLTEHKEIHQG 583
RYKC+ C K FSR L++H++IH G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 62 RYKCNLCSKEFSRNCYLTEHMEQHQG 87
RYKCN C K FSRN L++H + H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 116 RYKCNLCSKEFSRNCYLTEHMEQHQG 141
RYKCN C K FSRN L++H + H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 289 RYKCDLCSKEFSRKGNLTKHMKLHQG 314
RYKC+ C K FSR L++H K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 370 RYKCDLCSKEFSRKGNLTKHMKLHQG 395
RYKC+ C K FSR L++H K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 451 RYKCDLCSKEFSRKGNLTKHMKLHQG 476
RYKC+ C K FSR L++H K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 235 RYKCDLCLKEFSRKDNLTEHKEIHQG 260
RYKC+ C K FSR L++H++IH G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 316 RYKCDLCLKEFSRKDNLTEHKEIHQG 341
RYKC+ C K FSR L++H++IH G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 397 RYKCDLCLKEFSRKDNLTEHKEIHQG 422
RYKC+ C K FSR L++H++IH G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQG 33
YKC+ C K FSR L+ H+KIH G
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 197 RYNCDLCSKEFSRKDNLTDHKKMHQG 222
RY C+ C K FSR L+ H+K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 89 RYKCDLCSKDFSYKSSLIEHKKLHQG 114
RYKC+ C K FS S L +H+K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 143 RYKCDLCSKDFSYKSSLIEHKKLHQG 168
RYKC+ C K FS S L +H+K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 170 RYKCNLCSKEYFFKRNLTEHKKLHQG 195
RYKCN C K + L++H+K+H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 504 RYKCDLCSKEFSSKGNLTEHMKQHQG 529
RYKC+ C K FS L++H K H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
Y+C C K F++K NLT+H+ IH G + S + G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKPSGPSSG 46
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQG 287
Y+C C K F++K NLT+H +IH G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQG 368
Y+C C K F++K NLT+H +IH G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQG 449
Y+C C K F++K NLT+H +IH G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQG 610
Y+C C K F++K NLT+H +IH G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQG 60
Y+C C K F++K NLT H++IH G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQG 33
Y+C C K F++K NLT H++IH G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQG 556
Y+C C K F++K NLT+H+ IH G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQG 583
Y+C C K F++K NLT+H+ IH G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 290 YKCDLCSKEFSRKGNLTKHMKLHQG 314
Y+C C K F++K NLT+H ++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 371 YKCDLCSKEFSRKGNLTKHMKLHQG 395
Y+C C K F++K NLT+H ++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 452 YKCDLCSKEFSRKGNLTKHMKLHQG 476
Y+C C K F++K NLT+H ++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 236 YKCDLCLKEFSRKDNLTEHKEIHQG 260
Y+C C K F++K NLT+H+ IH G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 317 YKCDLCLKEFSRKDNLTEHKEIHQG 341
Y+C C K F++K NLT+H+ IH G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 398 YKCDLCLKEFSRKDNLTEHKEIHQG 422
Y+C C K F++K NLT+H+ IH G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 198 YNCDLCSKEFSRKDNLTDHKKMHQG 222
Y C C K F++K NLT H+++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 505 YKCDLCSKEFSSKGNLTEHMKQHQG 529
Y+C C K F+ K NLT+H + H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 171 YKCNLCSKEYFFKRNLTEHKKLHQG 195
Y+C C K + K NLT+H+++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQG 114
Y+C C K F+ K++L +H+++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQG 168
Y+C C K F+ K++L +H+++H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 36.6 bits (83), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 561 CDLCSKEFSRKDNLTEHKEIHQGIRYK-CDLCSKKFSRKLNLTKHMKIHQ 609
C+ C K + L+ H+ H G R + C C K F + + +H+K+HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 265 CDLCSKKFSRKLNLTKHMKIHQGIRYK-CDLCSKEFSRKGNLTKHMKLHQ 313
C+ C K + L++H + H G R + C C K F + + +H+K+HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 346 CDLCSKKFSRKLNLTKHMKIHQGIRYK-CDLCSKEFSRKGNLTKHMKLHQ 394
C+ C K + L++H + H G R + C C K F + + +H+K+HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 427 CDLCSKKFSRKLNLTKHMKIHQGIRYK-CDLCSKEFSRKGNLTKHMKLHQ 475
C+ C K + L++H + H G R + C C K F + + +H+K+HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 238 CDLCLKEFSRKDNLTEHKEIHQGIRYK-CDLCSKKFSRKLNLTKHMKIHQ 286
C+ C K + L+ H+ H G R + C C K F + + +H+K+HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 319 CDLCLKEFSRKDNLTEHKEIHQGIRYK-CDLCSKKFSRKLNLTKHMKIHQ 367
C+ C K + L+ H+ H G R + C C K F + + +H+K+HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 400 CDLCLKEFSRKDNLTEHKEIHQGIRYK-CDLCSKKFSRKLNLTKHMKIHQ 448
C+ C K + L+ H+ H G R + C C K F + + +H+K+HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 173 CNLCSKEYFFKRNLTEHKKLHQGIRY-NCDLCSKEFSRKDNLTDHKKMHQ 221
CN C K Y L+ H++ H G R +C C K F + + H K+HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 507 CDLCSKEFSSKGNLTEHMKQHQGIRYK-CDLCSKEFSRKDNLTEHKEIHQ 555
C+ C K + L+ H + H G R + C C K F + + H ++HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 534 CDLCSKEFSRKDNLTEHKEIHQGIRYK-CDLCSKEFSRKDNLTEHKEIHQ 582
C+ C K + L+ H+ H G R + C C K F + + H ++HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 11 CDLCSKEFSRKYNLTDHKKIHQGIRYK-CNLCSKEFSRKYNLTDHKKIHQ 59
C+ C K + L+ H++ H G R + C C K F + + H K+HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 292 CDLCSKEFSRKGNLTKHMKLHQGIRYK-CDLCLKEFSRKDNLTEHKEIHQ 340
C+ C K + L++H + H G R + C C K F + + H ++HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 373 CDLCSKEFSRKGNLTKHMKLHQGIRYK-CDLCLKEFSRKDNLTEHKEIHQ 421
C+ C K + L++H + H G R + C C K F + + H ++HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 65 CNLCSKEFSRNCYLTEHMEQHQGIRYK-CDLCSKDFSYKSSLIEHKKLHQ 113
CN C K + L+ H H G R + C C K F +S + H K+HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 119 CNLCSKEFSRNCYLTEHMEQHQGIRYK-CDLCSKDFSYKSSLIEHKKLHQ 167
CN C K + L+ H H G R + C C K F +S + H K+HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 38 CNLCSKEFSRKYNLTDHKKIHQGIRYK-CNLCSKEFSRNCYLTEHMEQHQ 86
CN C K + L+ H++ H G R + C C K F + H++ HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 92 CDLCSKDFSYKSSLIEHKKLHQGIRYK-CNLCSKEFSRNCYLTEHMEQHQ 140
C+ C K + S L H++ H G R + C C K F + H++ HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 146 CDLCSKDFSYKSSLIEHKKLHQGIRYK-CNLCSKEYFFKRNLTEHKKLHQ 194
C+ C K + S L H++ H G R + C C K + + + H K+HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
YKCD+C K+FS+ +L H+ +H G + S + G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSSG 46
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQG 33
YKCD+C KEFS+ +L H+++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQG 556
YKCD+C KEFS+ +L H+ +H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQG 583
YKCD+C KEFS+ +L H+ +H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 290 YKCDLCSKEFSRKGNLTKHMKLHQG 314
YKCD+C KEFS+ +L H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 371 YKCDLCSKEFSRKGNLTKHMKLHQG 395
YKCD+C KEFS+ +L H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 452 YKCDLCSKEFSRKGNLTKHMKLHQG 476
YKCD+C KEFS+ +L H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 236 YKCDLCLKEFSRKDNLTEHKEIHQG 260
YKCD+C KEFS+ +L H+ +H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 317 YKCDLCLKEFSRKDNLTEHKEIHQG 341
YKCD+C KEFS+ +L H+ +H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 398 YKCDLCLKEFSRKDNLTEHKEIHQG 422
YKCD+C KEFS+ +L H+ +H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQG 60
YKC++C KEFS+ +L H+++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 198 YNCDLCSKEFSRKDNLTDHKKMHQG 222
Y CD+C KEFS+ +L H+++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQG 287
YKCD+C K+FS+ +L H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQG 368
YKCD+C K+FS+ +L H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQG 449
YKCD+C K+FS+ +L H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQG 610
YKCD+C K+FS+ +L H ++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQG 114
YKCD+C K+FS S L H+++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQG 168
YKCD+C K+FS S L H+++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 505 YKCDLCSKEFSSKGNLTEHMKQHQG 529
YKCD+C KEFS +L H + H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 63 YKCNLCSKEFSRNCYLTEHMEQHQG 87
YKC++C KEFS++ +L H H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 117 YKCNLCSKEFSRNCYLTEHMEQHQG 141
YKC++C KEFS++ +L H H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 479 YKCDLCLKEFSRKDNL-TDRKIHQG 502
YKCD+C KEFS+ +L T +++H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 36.2 bits (82), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 288 IRYKCDLCSKEFSRKGNLTKHMKLHQG-IRYKCDLCLKEFSRKDNLTEHKEIHQG-IRYK 345
+ Y C +C + + +L +H +H +Y C C K F + T+H+ H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 346 CDLCSKKFSRKLNLTKHMK 364
C C K F ++ H+K
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 36.2 bits (82), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 369 IRYKCDLCSKEFSRKGNLTKHMKLHQG-IRYKCDLCLKEFSRKDNLTEHKEIHQG-IRYK 426
+ Y C +C + + +L +H +H +Y C C K F + T+H+ H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 427 CDLCSKKFSRKLNLTKHMK 445
C C K F ++ H+K
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 530 IRYKCDLCSKEFSRKDNLTEHKEIHQG-IRYKCDLCSKEFSRKDNLTEHKEIHQG-IRYK 587
+ Y C +C + + +L H IH +Y C C K F + T+H+ H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 588 CDLCSKKFSRKLNLTKHMK 606
C C K F ++ H+K
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 261 IRYKCDLCSKKFSRKLNLTKHMKIHQG-IRYKCDLCSKEFSRKGNLTKHMKLHQG-IRYK 318
+ Y C +C + + +L +H IH +Y C C K F TKH H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 319 CDLCLKEFSRKDNLTEH-KEIH 339
C C K F ++ H K +H
Sbjct: 81 CLACGKSFINYQFMSSHIKSVH 102
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 342 IRYKCDLCSKKFSRKLNLTKHMKIHQG-IRYKCDLCSKEFSRKGNLTKHMKLHQG-IRYK 399
+ Y C +C + + +L +H IH +Y C C K F TKH H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 400 CDLCLKEFSRKDNLTEH-KEIH 420
C C K F ++ H K +H
Sbjct: 81 CLACGKSFINYQFMSSHIKSVH 102
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 88 IRYKCDLCSKDFSYKSSLIEHKKLHQG-IRYKCNLCSKEFSRNCYLTEHMEQHQG-IRYK 145
+ Y C +C + + +SL H +H +Y C C K F Y T+H H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 146 CDLCSKDF 153
C C K F
Sbjct: 81 CLACGKSF 88
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 503 IRYKCDLCSKEFSSKGNLTEHMKQHQG-IRYKCDLCSKEFSRKDNLTEHKEIHQG-IRYK 560
+ Y C +C + + +L H H +Y C C K F + T+H+ H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 561 CDLCSKEFSRKDNLTEH-KEIH 581
C C K F ++ H K +H
Sbjct: 81 CLACGKSFINYQFMSSHIKSVH 102
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 142 IRYKCDLCSKDFSYKSSLIEHKKLHQG-IRYKCNLCSKEYFFKRNLTEHKKLHQG-IRYN 199
+ Y C +C + + +SL H +H +Y C C K + T+H+ H G RY
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 200 CDLCSKEFSRKDNLTDH-KKMHQGNLTKHMKLHQ 232
C C K F ++ H K +H + + KL++
Sbjct: 81 CLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYR 114
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 396 IRYKCDLCLKEFSRKDNLTEHKEIHQG-IRYKCDLCSKKFSRKLNLTKHMKIHQG-IRYK 453
+ Y C +C + + +L H IH +Y C C K F TKH H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 454 CDLCSKEFSRKGNLTKHMK 472
C C K F ++ H+K
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 423 IRYKCDLCSKKFSRKLNLTKHMKIHQG-IRYKCDLCSKEFSRKGNLTKHMKLHQG-IRYK 480
+ Y C +C + + +L +H IH +Y C C K F TKH H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 481 CDLCLKEF 488
C C K F
Sbjct: 81 CLACGKSF 88
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 34 IRYKCNLCSKEFSRKYNLTDHKKIHQG-IRYKCNLCSKEFSRNCYLTEHMEQHQG-IRYK 91
+ Y C +C + + +L H IH +Y C C K F Y T+H H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 92 CDLCSKDF 99
C C K F
Sbjct: 81 CLACGKSF 88
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 557 IRYKCDLCSKEFSRKDNLTEHKEIHQG-IRYKCDLCSKKFSRKLNLTKHMKIHQG-IRYK 614
+ Y C +C + + +L H IH +Y C C K F TKH H G RY+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 615 CDLCSKEF 622
C C K F
Sbjct: 81 CLACGKSF 88
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 223 NLTKHMKLHQG-IRYKCDLCLKEFSRKDNLTEHKEIHQG-IRYKCDLCSKKFSRKLNLTK 280
+L +H +H +Y C C K F + T+H+ H G RY+C C K F ++
Sbjct: 37 SLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSS 96
Query: 281 HMK 283
H+K
Sbjct: 97 HIK 99
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
YKC C K F R +L EH+ IH G R S + G
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG 46
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQGIR 558
YKC C K F R +L EH+ IH G R
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYR 39
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQGIR 585
YKC C K F R +L EH+ IH G R
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYR 39
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQGIR 62
YKC+ C K F R +L +H++IH G R
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYR 39
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQGIR 35
YKC C K F R +L +H++IH G R
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYR 39
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 236 YKCDLCLKEFSRKDNLTEHKEIHQGIR 262
YKC C K F R +L EH+ IH G R
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYR 39
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 317 YKCDLCLKEFSRKDNLTEHKEIHQGIR 343
YKC C K F R +L EH+ IH G R
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYR 39
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 398 YKCDLCLKEFSRKDNLTEHKEIHQGIR 424
YKC C K F R +L EH+ IH G R
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYR 39
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQGIR 289
YKC C K F R +L +H +IH G R
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYR 39
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQGIR 370
YKC C K F R +L +H +IH G R
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYR 39
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQGIR 451
YKC C K F R +L +H +IH G R
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYR 39
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQGIR 612
YKC C K F R +L +H +IH G R
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYR 39
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 63 YKCNLCSKEFSRNCYLTEHMEQHQGIR 89
YKC+ C K F R+ +L EH H G R
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYR 39
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 117 YKCNLCSKEFSRNCYLTEHMEQHQGIR 143
YKC+ C K F R+ +L EH H G R
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYR 39
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 290 YKCDLCSKEFSRKGNLTKHMKLHQGIR 316
YKC C K F R +L +H ++H G R
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYR 39
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 371 YKCDLCSKEFSRKGNLTKHMKLHQGIR 397
YKC C K F R +L +H ++H G R
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYR 39
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 452 YKCDLCSKEFSRKGNLTKHMKLHQGIR 478
YKC C K F R +L +H ++H G R
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYR 39
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
Y+CD+C K FS +LT+H+ +H G + S + G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKPSGPSSG 46
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQG 114
Y+CD+C K FS+ +SL +H+++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQG 168
Y+CD+C K FS+ +SL +H+++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQG 287
Y+CD+C K FS +LT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQG 368
Y+CD+C K FS +LT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQG 449
Y+CD+C K FS +LT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQG 610
Y+CD+C K FS +LT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQG 33
Y+CD+C K FS +LT H+++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 290 YKCDLCSKEFSRKGNLTKHMKLHQG 314
Y+CD+C K FS +LT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 371 YKCDLCSKEFSRKGNLTKHMKLHQG 395
Y+CD+C K FS +LT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 452 YKCDLCSKEFSRKGNLTKHMKLHQG 476
Y+CD+C K FS +LT+H ++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 236 YKCDLCLKEFSRKDNLTEHKEIHQG 260
Y+CD+C K FS +LT+H+ +H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 317 YKCDLCLKEFSRKDNLTEHKEIHQG 341
Y+CD+C K FS +LT+H+ +H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 398 YKCDLCLKEFSRKDNLTEHKEIHQG 422
Y+CD+C K FS +LT+H+ +H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQG 556
Y+CD+C K FS +LT+H+ +H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQG 583
Y+CD+C K FS +LT+H+ +H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 198 YNCDLCSKEFSRKDNLTDHKKMHQG 222
Y CD+C K FS +LT H+++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQG 60
Y+C++C K FS +LT H+++H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 505 YKCDLCSKEFSSKGNLTEHMKQHQG 529
Y+CD+C K FS +LT+H + H G
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSG 37
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQG 114
YKCD+C K F Y SSL H+++H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQG 168
YKCD+C K F Y SSL H+++H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
YKCD+C K F +LT H+ IH G + S + G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG 46
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQG 556
YKCD+C K F +LT H+ IH G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQG 583
YKCD+C K F +LT H+ IH G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQG 33
YKCD+C K F +LT H++IH G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 236 YKCDLCLKEFSRKDNLTEHKEIHQG 260
YKCD+C K F +LT H+ IH G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 317 YKCDLCLKEFSRKDNLTEHKEIHQG 341
YKCD+C K F +LT H+ IH G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 398 YKCDLCLKEFSRKDNLTEHKEIHQG 422
YKCD+C K F +LT H+ IH G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQG 287
YKCD+C K F +LT H +IH G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQG 368
YKCD+C K F +LT H +IH G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQG 449
YKCD+C K F +LT H +IH G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQG 610
YKCD+C K F +LT H +IH G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 290 YKCDLCSKEFSRKGNLTKHMKLHQG 314
YKCD+C K F +LT H ++H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 371 YKCDLCSKEFSRKGNLTKHMKLHQG 395
YKCD+C K F +LT H ++H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 452 YKCDLCSKEFSRKGNLTKHMKLHQG 476
YKCD+C K F +LT H ++H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQG 60
YKC++C K F +LT H++IH G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 171 YKCNLCSKEYFFKRNLTEHKKLHQG 195
YKC++C K + + +LT H+++H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 198 YNCDLCSKEFSRKDNLTDHKKMHQG 222
Y CD+C K F +LT H+++H G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTG 37
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQGIR 116
Y C+ C K F++KS LI HK +H G++
Sbjct: 11 YSCNECGKAFTFKSQLIVHKGVHTGVK 37
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQGIR 170
Y C+ C K F++KS LI HK +H G++
Sbjct: 11 YSCNECGKAFTFKSQLIVHKGVHTGVK 37
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 171 YKCNLCSKEYFFKRNLTEHKKLHQGIR 197
Y CN C K + FK L HK +H G++
Sbjct: 11 YSCNECGKAFTFKSQLIVHKGVHTGVK 37
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQGIR 62
Y CN C K F+ K L HK +H G++
Sbjct: 11 YSCNECGKAFTFKSQLIVHKGVHTGVK 37
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
Y C+ C K F+ K L HK +H G++ S + G
Sbjct: 11 YSCNECGKAFTFKSQLIVHKGVHTGVKPSGPSSG 44
Score = 30.0 bits (66), Expect = 6.2, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQGIR 558
Y C+ C K F+ K L HK +H G++
Sbjct: 11 YSCNECGKAFTFKSQLIVHKGVHTGVK 37
Score = 30.0 bits (66), Expect = 6.2, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQGIR 585
Y C+ C K F+ K L HK +H G++
Sbjct: 11 YSCNECGKAFTFKSQLIVHKGVHTGVK 37
Score = 29.6 bits (65), Expect = 9.4, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQGIR 35
Y C+ C K F+ K L HK +H G++
Sbjct: 11 YSCNECGKAFTFKSQLIVHKGVHTGVK 37
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 290 YKCDLCSKEFSRKGNLTKHMKLHQG 314
Y+CD C K FS+KG+L H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 371 YKCDLCSKEFSRKGNLTKHMKLHQG 395
Y+CD C K FS+KG+L H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 452 YKCDLCSKEFSRKGNLTKHMKLHQG 476
Y+CD C K FS+KG+L H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 33.5 bits (75), Expect = 0.65, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 505 YKCDLCSKEFSSKGNLTEHMKQHQG 529
Y+CD C K FS KG+L H++ H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 33.1 bits (74), Expect = 0.81, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQG 114
Y+CD C K FS K SLI H ++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 33.1 bits (74), Expect = 0.81, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQG 168
Y+CD C K FS K SLI H ++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQG 287
Y+CD C K FS+K +L H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQG 368
Y+CD C K FS+K +L H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQG 449
Y+CD C K FS+K +L H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQG 610
Y+CD C K FS+K +L H+++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQG 556
Y+CD C K FS+K +L H +H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQG 583
Y+CD C K FS+K +L H +H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 30.8 bits (68), Expect = 4.5, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQG 33
Y+CD C K FS+K +L H ++H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 30.4 bits (67), Expect = 5.4, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQG 707
Y+CD C K FS+K +L H +H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 30.0 bits (66), Expect = 7.9, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 198 YNCDLCSKEFSRKDNLTDHKKMHQGN 223
Y CD C K FS+K +L H ++H G+
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGS 37
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 506 KCDLCSKEFSSKGNLTEHMKQHQ----GIRYKCDLCSKEFSRKDNLTEHK 551
+C++C K +L H ++H +R+ C+ C K F + D++ H+
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 533 KCDLCSKEFSRKDNLTEHKEIHQ----GIRYKCDLCSKEFSRKDNLTEHK 578
+C++C +K +L H+ H +R+ C+ C K F + D++ H+
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 291 KCDLCSKEFSRKGNLTKHMKLHQ----GIRYKCDLCLKEFSRKDNLTEHK 336
+C++C +K +L H + H +R+ C+ C K F + D++ H+
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 372 KCDLCSKEFSRKGNLTKHMKLHQ----GIRYKCDLCLKEFSRKDNLTEHK 417
+C++C +K +L H + H +R+ C+ C K F + D++ H+
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 200 CDLCSKEFSRKDNLTDHKKMHQGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTEHK 255
C++C +K +L H++ KH + +R+ C+ C K F + D++ H+
Sbjct: 10 CEICGFTCRQKASLNWHQR-------KHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
Score = 30.4 bits (67), Expect = 5.9, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 8 GYKCDLCSKEFSRKYNLTDHKKIHQ----GIRYKCNLCSKEFSRKYNLTDHK 55
G +C++C +K +L H++ H +R+ C C K F + ++ H+
Sbjct: 7 GLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
Score = 30.0 bits (66), Expect = 7.5, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 172 KCNLCSKEYFFKRNLTEHKKLHQ----GIRYNCDLCSKEFSRKDNLTDHK 217
+C +C K +L H++ H +R+ C+ C K F + D++ H+
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
Score = 29.6 bits (65), Expect = 9.1, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 68 CSKEFSRNCYLTEHMEQHQGIRYKCDLCSKDFSYKSSLIEHK 109
C ++ S N + +H E +R+ C+ C K F S+ H+
Sbjct: 17 CRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
Score = 29.6 bits (65), Expect = 9.1, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 122 CSKEFSRNCYLTEHMEQHQGIRYKCDLCSKDFSYKSSLIEHK 163
C ++ S N + +H E +R+ C+ C K F S+ H+
Sbjct: 17 CRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
Y+C+ C K FS + +LT H+ IH G + S + G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSSG 46
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQG 60
Y+CN C K FS + +LT H+ IH G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQG 114
Y+C+ C K FS +SSL H+ +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQG 168
Y+C+ C K FS +SSL H+ +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQG 556
Y+C+ C K FS + +LT H+ IH G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQG 583
Y+C+ C K FS + +LT H+ IH G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQG 33
Y+C+ C K FS + +LT H+ IH G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 236 YKCDLCLKEFSRKDNLTEHKEIHQG 260
Y+C+ C K FS + +LT H+ IH G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 317 YKCDLCLKEFSRKDNLTEHKEIHQG 341
Y+C+ C K FS + +LT H+ IH G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 398 YKCDLCLKEFSRKDNLTEHKEIHQG 422
Y+C+ C K FS + +LT H+ IH G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQG 287
Y+C+ C K FS + +LT H IH G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQG 368
Y+C+ C K FS + +LT H IH G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQG 449
Y+C+ C K FS + +LT H IH G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQG 610
Y+C+ C K FS + +LT H IH G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 198 YNCDLCSKEFSRKDNLTDHKKMHQG 222
Y C+ C K FS + +LT H+ +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 290 YKCDLCSKEFSRKGNLTKHMKLHQG 314
Y+C+ C K FS + +LT H +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 371 YKCDLCSKEFSRKGNLTKHMKLHQG 395
Y+C+ C K FS + +LT H +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 452 YKCDLCSKEFSRKGNLTKHMKLHQG 476
Y+C+ C K FS + +LT H +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 171 YKCNLCSKEYFFKRNLTEHKKLHQG 195
Y+CN C K + + +LT H+ +H G
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTG 37
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
Y+C +CSK F++K +L +H++ H G + S + G
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSSG 46
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQG 287
Y+C +CSK F++K +L +H K H G
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQG 368
Y+C +CSK F++K +L +H K H G
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQG 449
Y+C +CSK F++K +L +H K H G
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQG 610
Y+C +CSK F++K +L +H K H G
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 290 YKCDLCSKEFSRKGNLTKHMKLHQG 314
Y+C +CSK F++K +L +H K H G
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 371 YKCDLCSKEFSRKGNLTKHMKLHQG 395
Y+C +CSK F++K +L +H K H G
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 452 YKCDLCSKEFSRKGNLTKHMKLHQG 476
Y+C +CSK F++K +L +H K H G
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQG 60
Y+C +CSK F++K +L H+K H G
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQG 33
Y+C +CSK F++K +L H+K H G
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 198 YNCDLCSKEFSRKDNLTDHKKMHQG 222
Y C +CSK F++K +L H+K H G
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 505 YKCDLCSKEFSSKGNLTEHMKQHQG 529
Y+C +CSK F+ K +L +H K H G
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQG 114
Y+C +CSK F+ K+ L +H+K H G
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQG 168
Y+C +CSK F+ K+ L +H+K H G
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQG 556
Y+C +CSK F++K +L +H++ H G
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQG 583
Y+C +CSK F++K +L +H++ H G
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 63 YKCNLCSKEFSRNCYLTEHMEQHQG 87
Y+C +CSK F++ +L +H + H G
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 117 YKCNLCSKEFSRNCYLTEHMEQHQG 141
Y+C +CSK F++ +L +H + H G
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTG 37
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
YKC+ C K F++ +L H+ IH G++ S + G
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG 46
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQGIR 62
YKCN C K F++ +L +H++IH G++
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQGIR 35
YKC+ C K F++ +L +H++IH G++
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 63 YKCNLCSKEFSRNCYLTEHMEQHQGIR 89
YKCN C K F++N +L H H G++
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 117 YKCNLCSKEFSRNCYLTEHMEQHQGIR 143
YKCN C K F++N +L H H G++
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQGIR 558
YKC+ C K F++ +L H+ IH G++
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQGIR 585
YKC+ C K F++ +L H+ IH G++
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQGIR 289
YKC+ C K F++ +L H +IH G++
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQGIR 370
YKC+ C K F++ +L H +IH G++
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQGIR 451
YKC+ C K F++ +L H +IH G++
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQGIR 612
YKC+ C K F++ +L H +IH G++
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQGIR 116
YKC+ C K F+ S L H+++H G++
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQGIR 170
YKC+ C K F+ S L H+++H G++
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 236 YKCDLCLKEFSRKDNLTEHKEIHQGIR 262
YKC+ C K F++ +L H+ IH G++
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 317 YKCDLCLKEFSRKDNLTEHKEIHQGIR 343
YKC+ C K F++ +L H+ IH G++
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 398 YKCDLCLKEFSRKDNLTEHKEIHQGIR 424
YKC+ C K F++ +L H+ IH G++
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 290 YKCDLCSKEFSRKGNLTKHMKLHQGIR 316
YKC+ C K F++ +L H ++H G++
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 371 YKCDLCSKEFSRKGNLTKHMKLHQGIR 397
YKC+ C K F++ +L H ++H G++
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 452 YKCDLCSKEFSRKGNLTKHMKLHQGIR 478
YKC+ C K F++ +L H ++H G++
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQG 60
Y+C+ C K FSRKY L H++ H G
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAG 37
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQG 33
Y+C C K FSRKY L H++ H G
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAG 37
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
Y+C C K FSRK L H+ H G + S + G
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG 46
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQG 287
Y+C C K FSRK L H + H G
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAG 37
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQG 368
Y+C C K FSRK L H + H G
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAG 37
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQG 449
Y+C C K FSRK L H + H G
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAG 37
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQG 610
Y+C C K FSRK L H + H G
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAG 37
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
Y+C +C K F++K L H++IH G + S + G
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG 46
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQG 556
Y+C +C K F++K L H++IH G
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTG 37
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQG 583
Y+C +C K F++K L H++IH G
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTG 37
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQG 60
Y+C++C K F++K L H++IH G
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTG 37
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 236 YKCDLCLKEFSRKDNLTEHKEIHQG 260
Y+C +C K F++K L H++IH G
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTG 37
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 317 YKCDLCLKEFSRKDNLTEHKEIHQG 341
Y+C +C K F++K L H++IH G
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTG 37
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 398 YKCDLCLKEFSRKDNLTEHKEIHQG 422
Y+C +C K F++K L H++IH G
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTG 37
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQG 33
Y+C +C K F++K L H++IH G
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTG 37
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQG 287
Y+C +C K F++K L H +IH G
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTG 37
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQG 368
Y+C +C K F++K L H +IH G
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTG 37
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQG 449
Y+C +C K F++K L H +IH G
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTG 37
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQG 610
Y+C +C K F++K L H +IH G
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTG 37
Score = 29.6 bits (65), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 198 YNCDLCSKEFSRKDNLTDHKKMHQG 222
Y C +C K F++K L H+++H G
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTG 37
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 504 RYKCDLCSKEFSSKGNLTEHMKQHQGIRYKCDLCSKEFSRKDNLTEH 550
++ C LC FSS +L +H++ + + C +C KEF+ D+ +H
Sbjct: 74 QFVCPLCLMPFSSSVSLKQHIRYTEHTKV-CPVCKKEFTSTDSALDH 119
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Query: 478 RYKCDLCLKEFSRKDNLTDRKIHQGIRYK-----CDLCSKEFSSKGNLTEHM 524
++ C LCL FS +L Q IRY C +C KEF+S + +H+
Sbjct: 74 QFVCPLCLMPFSSSVSLK-----QHIRYTEHTKVCPVCKKEFTSTDSALDHV 120
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 289 RYKCDLCSKEFSRKGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTEH 335
++ C LC FS +L +H++ + + C +C KEF+ D+ +H
Sbjct: 74 QFVCPLCLMPFSSSVSLKQHIRYTEHTKV-CPVCKKEFTSTDSALDH 119
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 370 RYKCDLCSKEFSRKGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTEH 416
++ C LC FS +L +H++ + + C +C KEF+ D+ +H
Sbjct: 74 QFVCPLCLMPFSSSVSLKQHIRYTEHTKV-CPVCKKEFTSTDSALDH 119
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 12/110 (10%)
Query: 4 HQGIGYKCDLCSKEFSRKYNLTDHKK-----IHQGIRYKCNLCSKEFSRKYNLTDHKKIH 58
H+GI L +E R + LT +K I + + + L E S Y L K I
Sbjct: 17 HKGIFIHVTL--EELKRYHQLTPEQKRLIRAIVKTLIHNPQLLD-ESSYLYRLLASKAIS 73
Query: 59 QGIRYKCNLCSKEFSRNCYLTEHMEQHQGIRYKCDLCSKDFSYKSSLIEH 108
Q + C LC FS + L +H+ + + C +C K+F+ S ++H
Sbjct: 74 Q---FVCPLCLMPFSSSVSLKQHIRYTEHTKV-CPVCKKEFTSTDSALDH 119
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 11/52 (21%)
Query: 531 RYKCDLCSKEFSRKDNLTEHKEIHQGIRYK-----CDLCSKEFSRKDNLTEH 577
++ C LC FS +L +H IRY C +C KEF+ D+ +H
Sbjct: 74 QFVCPLCLMPFSSSVSLKQH------IRYTEHTKVCPVCKKEFTSTDSALDH 119
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 585 RYKCDLCSKKFSRKLNLTKHMKIHQGIRYKCDLCSKEFSRKD 626
++ C LC FS ++L +H++ + + C +C KEF+ D
Sbjct: 74 QFVCPLCLMPFSSSVSLKQHIRYTEHTKV-CPVCKKEFTSTD 114
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 451 RYKCDLCSKEFSRKGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTD 496
++ C LC FS +L +H++ + + C +C KEF+ D+ D
Sbjct: 74 QFVCPLCLMPFSSSVSLKQHIRYTEHTKV-CPVCKKEFTSTDSALD 118
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 28/74 (37%)
Query: 143 RYKCDLCSKDFSYKSSLIEHKKLHQGIRYKCNLCSKEYFFKRNLTEHKKLHQGIRYNCDL 202
++ C LC FS SL +H IRY TEH K+ C +
Sbjct: 74 QFVCPLCLMPFSSSVSLKQH------IRY---------------TEHTKV-------CPV 105
Query: 203 CSKEFSRKDNLTDH 216
C KEF+ D+ DH
Sbjct: 106 CKKEFTSTDSALDH 119
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQG 114
Y C+ C KDFS KS LI H+++H G
Sbjct: 11 YGCNECGKDFSSKSYLIVHQRIHTG 35
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQG 168
Y C+ C KDFS KS LI H+++H G
Sbjct: 11 YGCNECGKDFSSKSYLIVHQRIHTG 35
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
Y C+ C KDFS K L H+ IH G ++S + G
Sbjct: 11 YGCNECGKDFSSKSYLIVHQRIHTGEKLSGPSSG 44
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQG 60
Y CN C K+FS K L H++IH G
Sbjct: 11 YGCNECGKDFSSKSYLIVHQRIHTG 35
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
Y+C +C K FS + +L+ H+ IH G + S + G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG 46
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQG 60
Y+C++C K FS + +L+ H++IH G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQG 33
Y+C +C K FS + +L+ H++IH G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQG 556
Y+C +C K FS + +L+ H+ IH G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQG 583
Y+C +C K FS + +L+ H+ IH G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQG 114
Y+C +C K FS++ SL H+++H G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQG 168
Y+C +C K FS++ SL H+++H G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQG 287
Y+C +C K FS + +L+ H +IH G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQG 368
Y+C +C K FS + +L+ H +IH G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQG 449
Y+C +C K FS + +L+ H +IH G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQG 610
Y+C +C K FS + +L+ H +IH G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 198 YNCDLCSKEFSRKDNLTDHKKMHQG 222
Y C +C K FS + +L+ H+++H G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 236 YKCDLCLKEFSRKDNLTEHKEIHQG 260
Y+C +C K FS + +L+ H+ IH G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 317 YKCDLCLKEFSRKDNLTEHKEIHQG 341
Y+C +C K FS + +L+ H+ IH G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 398 YKCDLCLKEFSRKDNLTEHKEIHQG 422
Y+C +C K FS + +L+ H+ IH G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 290 YKCDLCSKEFSRKGNLTKHMKLHQG 314
Y+C +C K FS + +L+ H ++H G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 371 YKCDLCSKEFSRKGNLTKHMKLHQG 395
Y+C +C K FS + +L+ H ++H G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 452 YKCDLCSKEFSRKGNLTKHMKLHQG 476
Y+C +C K FS + +L+ H ++H G
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSG 37
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 64 KCNLCSKEFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEHKKLHQ 113
+C+ C K F N YL H+ H G + YKC+ C + K+SL H + H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 118 KCNLCSKEFSRNCYLTEHMEQHQGIR-YKCDLCSKDFSYKSSLIEHKKLHQ 167
+C+ C K F N YL H+ H G + YKC+ C + K+SL H + H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 506 KCDLCSKEFSSKGNLTEHMKQHQGIR-YKCDLCSKEFSRKDNLTEHKEIHQ 555
+C C K F S L H++ H G + YKC+ C ++K +L H E H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 264 KCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQ 313
+C C K F L H++ H G + YKC+ C ++K +L H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 345 KCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQ 394
+C C K F L H++ H G + YKC+ C ++K +L H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 426 KCDLCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSRKGNLTKHMKLHQ 475
+C C K F L H++ H G + YKC+ C ++K +L H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 37 KCNLCSKEFSRKYNLTDHKKIHQGIR-YKCNLCSKEFSRNCYLTEHMEQHQ 86
+C+ C K F Y L H + H G + YKC C ++ L H+E+H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 291 KCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQ 340
+C C K F L H++ H G + YKC+ C ++K +L H E H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 372 KCDLCSKEFSRKGNLTKHMKLHQGIR-YKCDLCLKEFSRKDNLTEHKEIHQ 421
+C C K F L H++ H G + YKC+ C ++K +L H E H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 33.5 bits (75), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 176 CSKEYFFKRNLTEHKKLHQGIR-YNCDL--CSKEFSRKDNLTDHKKMH 220
C K YF +L H + H G + ++C C + F+R D L+ H++ H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
YKC+ C K FS+ L H+ IH G + S + G
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG 46
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQG 60
YKCN C K FS+ L H++IH G
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTG 37
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQG 287
YKC+ C K FS+ L +H +IH G
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTG 37
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQG 368
YKC+ C K FS+ L +H +IH G
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTG 37
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQG 449
YKC+ C K FS+ L +H +IH G
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTG 37
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQG 610
YKC+ C K FS+ L +H +IH G
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTG 37
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQG 556
YKC+ C K FS+ L H+ IH G
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTG 37
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQG 583
YKC+ C K FS+ L H+ IH G
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTG 37
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQG 114
YKC+ C K FS S L H+++H G
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTG 37
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQG 168
YKC+ C K FS S L H+++H G
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTG 37
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQG 33
YKC+ C K FS+ L H++IH G
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTG 37
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 290 YKCDLCSKEFSRKGNLTKHMKLHQG 314
YKC+ C K FS+ L +H ++H G
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTG 37
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 371 YKCDLCSKEFSRKGNLTKHMKLHQG 395
YKC+ C K FS+ L +H ++H G
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTG 37
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 452 YKCDLCSKEFSRKGNLTKHMKLHQG 476
YKC+ C K FS+ L +H ++H G
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTG 37
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 236 YKCDLCLKEFSRKDNLTEHKEIHQG 260
YKC+ C K FS+ L H+ IH G
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTG 37
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 317 YKCDLCLKEFSRKDNLTEHKEIHQG 341
YKC+ C K FS+ L H+ IH G
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTG 37
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 398 YKCDLCLKEFSRKDNLTEHKEIHQG 422
YKC+ C K FS+ L H+ IH G
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTG 37
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
YKC+ C K F NLT H+ IH G + S + G
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSSG 46
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQG 60
YKCN C K F NLT H+ IH G
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTG 37
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQG 556
YKC+ C K F NLT H+ IH G
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTG 37
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQG 583
YKC+ C K F NLT H+ IH G
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTG 37
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQG 33
YKC+ C K F NLT H+ IH G
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTG 37
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 236 YKCDLCLKEFSRKDNLTEHKEIHQG 260
YKC+ C K F NLT H+ IH G
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTG 37
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 317 YKCDLCLKEFSRKDNLTEHKEIHQG 341
YKC+ C K F NLT H+ IH G
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTG 37
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 398 YKCDLCLKEFSRKDNLTEHKEIHQG 422
YKC+ C K F NLT H+ IH G
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTG 37
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQG 287
YKC+ C K F NLT H IH G
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTG 37
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQG 368
YKC+ C K F NLT H IH G
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTG 37
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQG 449
YKC+ C K F NLT H IH G
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTG 37
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQG 610
YKC+ C K F NLT H IH G
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTG 37
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQG 287
YKC+ C K ++R+LNL H ++H G
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMG 37
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQG 368
YKC+ C K ++R+LNL H ++H G
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMG 37
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQG 449
YKC+ C K ++R+LNL H ++H G
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMG 37
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQG 610
YKC+ C K ++R+LNL H ++H G
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMG 37
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
YKC+ C K ++R+ NL H+ +H G + S + G
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG 46
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQG 33
YKC+ C K ++R+ NL H+++H G
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMG 37
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQG 60
YKC C K ++R+ NL H+++H G
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMG 37
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
Y+C C K F+RK L H+ IH G + S + G
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSGPSSG 46
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQG 114
Y+C C K F+ KS+LI H+++H G
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTG 37
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQG 168
Y+C C K F+ KS+LI H+++H G
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTG 37
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQG 60
Y+C+ C K F+RK L H++IH G
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTG 37
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQG 33
Y+C C K F+RK L H++IH G
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTG 37
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQG 287
Y+C C K F+RK L H +IH G
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTG 37
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQG 368
Y+C C K F+RK L H +IH G
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTG 37
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQG 449
Y+C C K F+RK L H +IH G
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTG 37
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQG 610
Y+C C K F+RK L H +IH G
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTG 37
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQG 556
Y+C C K F+RK L H+ IH G
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTG 37
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQG 583
Y+C C K F+RK L H+ IH G
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTG 37
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 198 YNCDLCSKEFSRKDNLTDHKKMHQG 222
Y C C K F+RK L H+++H G
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTG 37
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 290 YKCDLCSKEFSRKGNLTKHMKLHQG 314
Y+C C K F+RK L H ++H G
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTG 37
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 371 YKCDLCSKEFSRKGNLTKHMKLHQG 395
Y+C C K F+RK L H ++H G
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTG 37
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 452 YKCDLCSKEFSRKGNLTKHMKLHQG 476
Y+C C K F+RK L H ++H G
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTG 37
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 236 YKCDLCLKEFSRKDNLTEHKEIHQG 260
Y+C C K F+RK L H+ IH G
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTG 37
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 317 YKCDLCLKEFSRKDNLTEHKEIHQG 341
Y+C C K F+RK L H+ IH G
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTG 37
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 398 YKCDLCLKEFSRKDNLTEHKEIHQG 422
Y+C C K F+RK L H+ IH G
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTG 37
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQGIR 35
YKC+ C K ++ K+NL H+K+H G R
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGER 39
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
YKC+ C K ++ K NL H+++H G R S + G
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG 46
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQGIR 289
YKC+ C K ++ K NL H K+H G R
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGER 39
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQGIR 370
YKC+ C K ++ K NL H K+H G R
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGER 39
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQGIR 451
YKC+ C K ++ K NL H K+H G R
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGER 39
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQGIR 612
YKC+ C K ++ K NL H K+H G R
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGER 39
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQGIR 62
YKC C K ++ K+NL H+K+H G R
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGER 39
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 289 RYKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKC--DLCLKEFSRKDNLTEHKEIHQGIR 343
RY C C +++ L H+ H G + + C + C K F+ +LT H H G +
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 62
Query: 344 -YKCDL--CSKKFSRKLNLTKHMKIHQGIR 370
+ CD C +F+ K N+ KH I+
Sbjct: 63 NFTCDSDGCDLRFTTKANMKKHFNRFHNIK 92
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 370 RYKCDL--CSKEFSRKGNLTKHMKLHQGIR-YKC--DLCLKEFSRKDNLTEHKEIHQGIR 424
RY C C +++ L H+ H G + + C + C K F+ +LT H H G +
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 62
Query: 425 -YKCDL--CSKKFSRKLNLTKHMKIHQGIR 451
+ CD C +F+ K N+ KH I+
Sbjct: 63 NFTCDSDGCDLRFTTKANMKKHFNRFHNIK 92
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 531 RYKCDL--CSKEFSRKDNLTEHKEIHQGIR-YKC--DLCSKEFSRKDNLTEHKEIHQGIR 585
RY C C +++ L H H G + + C + C K F+ +LT H H G +
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 62
Query: 586 -YKCDL--CSKKFSRKLNLTKHMKIHQGIR 612
+ CD C +F+ K N+ KH I+
Sbjct: 63 NFTCDSDGCDLRFTTKANMKKHFNRFHNIK 92
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 235 RYKCDL--CLKEFSRKDNLTEHKEIHQGIR-YKC--DLCSKKFSRKLNLTKHMKIHQGIR 289
RY C C +++ L H H G + + C + C K F+ +LT+H H G +
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 62
Query: 290 -YKCDL--CSKEFSRKGNLTKHMKLHQGIR 316
+ CD C F+ K N+ KH I+
Sbjct: 63 NFTCDSDGCDLRFTTKANMKKHFNRFHNIK 92
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 316 RYKCDL--CLKEFSRKDNLTEHKEIHQGIR-YKC--DLCSKKFSRKLNLTKHMKIHQGIR 370
RY C C +++ L H H G + + C + C K F+ +LT+H H G +
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 62
Query: 371 -YKCDL--CSKEFSRKGNLTKHMKLHQGIR 397
+ CD C F+ K N+ KH I+
Sbjct: 63 NFTCDSDGCDLRFTTKANMKKHFNRFHNIK 92
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 262 RYKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKC--DLCSKEFSRKGNLTKHMKLHQGIR 316
RY C C +++ L H+ H G + + C + C K F+ +LT+H H G +
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 62
Query: 317 -YKCDL--CLKEFSRKDNLTEH 335
+ CD C F+ K N+ +H
Sbjct: 63 NFTCDSDGCDLRFTTKANMKKH 84
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 343 RYKCDL--CSKKFSRKLNLTKHMKIHQGIR-YKC--DLCSKEFSRKGNLTKHMKLHQGIR 397
RY C C +++ L H+ H G + + C + C K F+ +LT+H H G +
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 62
Query: 398 -YKCDL--CLKEFSRKDNLTEH 416
+ CD C F+ K N+ +H
Sbjct: 63 NFTCDSDGCDLRFTTKANMKKH 84
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQGIR 116
Y C C+K FS KS LI H++ H G++
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVK 39
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQGIR 170
Y C C+K FS KS LI H++ H G++
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVK 39
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
++C C K F+RK L+ H++IH G + S + G
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG 46
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQG 60
++C C K F+RK L+ H+KIH G
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTG 37
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQG 33
++C C K F+RK L+ H+KIH G
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTG 37
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQG 287
++C C K F+RK L+ H KIH G
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTG 37
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQG 368
++C C K F+RK L+ H KIH G
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTG 37
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQG 449
++C C K F+RK L+ H KIH G
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTG 37
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQG 610
++C C K F+RK L+ H KIH G
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTG 37
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQG 556
++C C K F+RK L+ H++IH G
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTG 37
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQG 583
++C C K F+RK L+ H++IH G
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTG 37
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 198 YNCDLCSKEFSRKDNLTDHKKMHQG 222
+ C C K F+RK L+ H+K+H G
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTG 37
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 290 YKCDLCSKEFSRKGNLTKHMKLHQG 314
++C C K F+RK L+ H K+H G
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTG 37
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 371 YKCDLCSKEFSRKGNLTKHMKLHQG 395
++C C K F+RK L+ H K+H G
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTG 37
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 452 YKCDLCSKEFSRKGNLTKHMKLHQG 476
++C C K F+RK L+ H K+H G
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTG 37
>pdb|2EOX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
315- 345) Of Human Zinc Finger Protein 473
Length = 44
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIH 58
Y CN C K F+R ++LT H+KIH
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIH 35
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIH 31
Y C+ C K F+R ++LT H+KIH
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIH 35
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIH 285
Y C+ C K F+R +LT+H KIH
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIH 35
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIH 366
Y C+ C K F+R +LT+H KIH
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIH 35
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIH 447
Y C+ C K F+R +LT+H KIH
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIH 35
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIH 608
Y C+ C K F+R +LT+H KIH
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIH 35
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 198 YNCDLCSKEFSRKDNLTDHKKMH 220
YNC+ C K F+R +LT H+K+H
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIH 35
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
Y C +C K F+ + NL +H++IH G + S + G
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG 46
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQG 287
Y C +C K F+ + NL KH KIH G
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQG 368
Y C +C K F+ + NL KH KIH G
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQG 449
Y C +C K F+ + NL KH KIH G
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQG 610
Y C +C K F+ + NL KH KIH G
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQG 114
Y C +C K F+ +S+LI+H+K+H G
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQG 168
Y C +C K F+ +S+LI+H+K+H G
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 290 YKCDLCSKEFSRKGNLTKHMKLHQG 314
Y C +C K F+ + NL KH K+H G
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 371 YKCDLCSKEFSRKGNLTKHMKLHQG 395
Y C +C K F+ + NL KH K+H G
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 452 YKCDLCSKEFSRKGNLTKHMKLHQG 476
Y C +C K F+ + NL KH K+H G
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQG 60
Y C +C K F+ + NL H+KIH G
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQG 33
Y C +C K F+ + NL H+KIH G
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQG 556
Y C +C K F+ + NL +H++IH G
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQG 583
Y C +C K F+ + NL +H++IH G
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 198 YNCDLCSKEFSRKDNLTDHKKMHQG 222
Y C +C K F+ + NL H+K+H G
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 236 YKCDLCLKEFSRKDNLTEHKEIHQG 260
Y C +C K F+ + NL +H++IH G
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 317 YKCDLCLKEFSRKDNLTEHKEIHQG 341
Y C +C K F+ + NL +H++IH G
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 398 YKCDLCLKEFSRKDNLTEHKEIHQG 422
Y C +C K F+ + NL +H++IH G
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTG 37
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
YKC C K F + NLT H+ IH G + S + G
Sbjct: 13 YKCYECGKAFRTRSNLTTHQVIHTGEKRSGPSSG 46
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQG 556
YKC C K F + NLT H+ IH G
Sbjct: 13 YKCYECGKAFRTRSNLTTHQVIHTG 37
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQG 583
YKC C K F + NLT H+ IH G
Sbjct: 13 YKCYECGKAFRTRSNLTTHQVIHTG 37
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQG 60
YKC C K F + NLT H+ IH G
Sbjct: 13 YKCYECGKAFRTRSNLTTHQVIHTG 37
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQG 33
YKC C K F + NLT H+ IH G
Sbjct: 13 YKCYECGKAFRTRSNLTTHQVIHTG 37
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 236 YKCDLCLKEFSRKDNLTEHKEIHQG 260
YKC C K F + NLT H+ IH G
Sbjct: 13 YKCYECGKAFRTRSNLTTHQVIHTG 37
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 317 YKCDLCLKEFSRKDNLTEHKEIHQG 341
YKC C K F + NLT H+ IH G
Sbjct: 13 YKCYECGKAFRTRSNLTTHQVIHTG 37
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 398 YKCDLCLKEFSRKDNLTEHKEIHQG 422
YKC C K F + NLT H+ IH G
Sbjct: 13 YKCYECGKAFRTRSNLTTHQVIHTG 37
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQG 287
YKC C K F + NLT H IH G
Sbjct: 13 YKCYECGKAFRTRSNLTTHQVIHTG 37
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQG 368
YKC C K F + NLT H IH G
Sbjct: 13 YKCYECGKAFRTRSNLTTHQVIHTG 37
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQG 449
YKC C K F + NLT H IH G
Sbjct: 13 YKCYECGKAFRTRSNLTTHQVIHTG 37
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQG 610
YKC C K F + NLT H IH G
Sbjct: 13 YKCYECGKAFRTRSNLTTHQVIHTG 37
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
+KC+ C K F++ +LT H+ IH G + S + G
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSSG 46
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQG 60
+KCN C K F++ +LT H++IH G
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTG 37
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQG 33
+KC+ C K F++ +LT H++IH G
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTG 37
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQG 556
+KC+ C K F++ +LT H+ IH G
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTG 37
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQG 583
+KC+ C K F++ +LT H+ IH G
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTG 37
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQG 60
YKCN C K F++ +LT+H +IH G
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTG 37
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
YKC+ C K F++ +LT H IH G + S + G
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG 46
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 63 YKCNLCSKEFSRNCYLTEHMEQHQG 87
YKCN C K F++N +LT H H G
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTG 37
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 117 YKCNLCSKEFSRNCYLTEHMEQHQG 141
YKCN C K F++N +LT H H G
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTG 37
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQG 287
YKC+ C K F++ +LT H +IH G
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTG 37
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQG 368
YKC+ C K F++ +LT H +IH G
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTG 37
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQG 449
YKC+ C K F++ +LT H +IH G
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTG 37
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQG 610
YKC+ C K F++ +LT H +IH G
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTG 37
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQG 33
YKC+ C K F++ +LT+H +IH G
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTG 37
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 290 YKCDLCSKEFSRKGNLTKHMKLHQG 314
YKC+ C K F++ +LT H ++H G
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTG 37
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 371 YKCDLCSKEFSRKGNLTKHMKLHQG 395
YKC+ C K F++ +LT H ++H G
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTG 37
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 452 YKCDLCSKEFSRKGNLTKHMKLHQG 476
YKC+ C K F++ +LT H ++H G
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTG 37
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQG 556
YKC+ C K F++ +LT H IH G
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTG 37
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQG 583
YKC+ C K F++ +LT H IH G
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTG 37
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQGI 115
Y C C K F++KS LI H+ +H G+
Sbjct: 11 YVCSDCGKAFTFKSQLIVHQGIHTGV 36
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQGI 169
Y C C K F++KS LI H+ +H G+
Sbjct: 11 YVCSDCGKAFTFKSQLIVHQGIHTGV 36
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 198 YNCDLCSKEFSRKDNLTDHKKMHQG 222
Y C C K FSRKD L H+K H G
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSG 37
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQG 556
Y+C C K FSRKD L H++ H G
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSG 37
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQG 583
Y+C C K FSRKD L H++ H G
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSG 37
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQG 707
Y+C C K FSRKD L H++ H G
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSG 37
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 236 YKCDLCLKEFSRKDNLTEHKEIHQG 260
Y+C C K FSRKD L H++ H G
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSG 37
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 317 YKCDLCLKEFSRKDNLTEHKEIHQG 341
Y+C C K FSRKD L H++ H G
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSG 37
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 398 YKCDLCLKEFSRKDNLTEHKEIHQG 422
Y+C C K FSRKD L H++ H G
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSG 37
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 198 YNCDLCSKEFSRKDNLTDHKKMHQG 222
Y C C K F+RKD L H++ H G
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAG 35
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQG 556
Y+C C K F+RKD L H+ H G
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAG 35
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQG 583
Y+C C K F+RKD L H+ H G
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAG 35
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQG 707
Y+C C K F+RKD L H+ H G
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAG 35
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 236 YKCDLCLKEFSRKDNLTEHKEIHQG 260
Y+C C K F+RKD L H+ H G
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAG 35
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 317 YKCDLCLKEFSRKDNLTEHKEIHQG 341
Y+C C K F+RKD L H+ H G
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAG 35
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 398 YKCDLCLKEFSRKDNLTEHKEIHQG 422
Y+C C K F+RKD L H+ H G
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAG 35
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
Y+C+ C K FS+ L H+ +H G + S + G
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKPSGPSSG 46
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQG 60
Y+CN C K FS+ L H+++H G
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTG 37
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQG 287
Y+C+ C K FS+ L +H ++H G
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTG 37
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQG 368
Y+C+ C K FS+ L +H ++H G
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTG 37
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQG 449
Y+C+ C K FS+ L +H ++H G
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTG 37
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQG 610
Y+C+ C K FS+ L +H ++H G
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTG 37
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
YKC+ C K F++ +L H+ +H G + S + G
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG 46
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQG 60
YKCN C K F++ +L H+++H G
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTG 37
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 63 YKCNLCSKEFSRNCYLTEHMEQHQG 87
YKCN C K F++N +L H H G
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTG 37
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 117 YKCNLCSKEFSRNCYLTEHMEQHQG 141
YKCN C K F++N +L H H G
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTG 37
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQG 114
++C+ C K FS+KS LI H+++H G
Sbjct: 11 HECNNCGKAFSFKSQLIIHQRIHTG 35
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQG 168
++C+ C K FS+KS LI H+++H G
Sbjct: 11 HECNNCGKAFSFKSQLIIHQRIHTG 35
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
Y+C C K F+ + NL H++IH G + S + G
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG 46
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQG 60
Y+C C K F+ + NL H+KIH G
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTG 37
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQG 33
Y+C C K F+ + NL H+KIH G
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTG 37
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQG 287
Y+C C K F+ + NL H KIH G
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTG 37
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQG 368
Y+C C K F+ + NL H KIH G
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTG 37
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQG 449
Y+C C K F+ + NL H KIH G
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTG 37
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQG 610
Y+C C K F+ + NL H KIH G
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTG 37
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
YKC+ C K F++ +L H+ IH G + S + G
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG 46
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQG 60
YKCN C K F++ +L H+ IH G
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTG 37
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
YKC+ C K F++ +L H+ IH G + S + G
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG 46
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQG 60
YKCN C K F++ +L H+ IH G
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTG 37
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 290 YKCDLCSKEFSRKGNLTKHMKLHQG 314
Y+C C K FS++G+L H +LH G
Sbjct: 11 YQCKECGKSFSQRGSLAVHERLHTG 35
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 371 YKCDLCSKEFSRKGNLTKHMKLHQG 395
Y+C C K FS++G+L H +LH G
Sbjct: 11 YQCKECGKSFSQRGSLAVHERLHTG 35
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 452 YKCDLCSKEFSRKGNLTKHMKLHQG 476
Y+C C K FS++G+L H +LH G
Sbjct: 11 YQCKECGKSFSQRGSLAVHERLHTG 35
Score = 30.0 bits (66), Expect = 7.3, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQG 114
Y+C C K FS + SL H++LH G
Sbjct: 11 YQCKECGKSFSQRGSLAVHERLHTG 35
Score = 30.0 bits (66), Expect = 7.3, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQG 168
Y+C C K FS + SL H++LH G
Sbjct: 11 YQCKECGKSFSQRGSLAVHERLHTG 35
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
YKC+ C K F++ +L H+ IH G + S + G
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSSG 46
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQG 60
YKCN C K F++ +L H+ IH G
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTG 37
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQG 114
YKC+ C K F+ S L+ H+ +H G
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTG 37
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQG 168
YKC+ C K F+ S L+ H+ +H G
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTG 37
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
YKC C K F+RK L H++ H G R S + G
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSSG 46
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQGIRY 559
YKC C K F+RK L H++ H G R+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERH 40
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQGIRY 586
YKC C K F+RK L H++ H G R+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERH 40
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQGIRY 63
YKC+ C K F+RK L H++ H G R+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERH 40
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 236 YKCDLCLKEFSRKDNLTEHKEIHQGIRY 263
YKC C K F+RK L H++ H G R+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERH 40
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 317 YKCDLCLKEFSRKDNLTEHKEIHQGIRY 344
YKC C K F+RK L H++ H G R+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERH 40
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 398 YKCDLCLKEFSRKDNLTEHKEIHQGIRY 425
YKC C K F+RK L H++ H G R+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERH 40
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQGIRY 36
YKC C K F+RK L H++ H G R+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERH 40
>pdb|1PAA|A Chain A, Structure Of A Histidine-X4-Histidine Zinc Finger Domain:
Insights Into Adr1-Uas1 Protein-Dna Recognition
Length = 30
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 198 YNCDLCSKEFSRKDNLTDH-KKMHQGNL 224
Y C LC++ F+R+D L H +K+H GNL
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIHSGNL 30
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 498 KIHQGIR-YKCDLCSKEFSSKGNLTEHMKQHQG-----IRYKCDLCSKEFSRKDNLTEHK 551
+ H G + Y C C K F K L H K++ + C C K F+R++ + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 552 E 552
+
Sbjct: 68 D 68
Score = 29.6 bits (65), Expect = 8.3, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQG-----IRYKCDLCSKEFSRKGNLTKH 308
Y C C K F +K L H K + + C C K F+R+ + +H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 29.6 bits (65), Expect = 8.3, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQG-----IRYKCDLCSKEFSRKGNLTKH 389
Y C C K F +K L H K + + C C K F+R+ + +H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 29.6 bits (65), Expect = 8.3, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQG-----IRYKCDLCSKEFSRKGNLTKH 470
Y C C K F +K L H K + + C C K F+R+ + +H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
Y C+ C K FS+K L+ H+ H G + S + G
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG 46
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQG 60
Y CN C K FS+K L+ H++ H G
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTG 37
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 291 KCDLCSKEFSRKGNLTKHMKLHQG 314
KC C K+F+ GNL +H+++H G
Sbjct: 4 KCRECGKQFTTSGNLKRHLRIHSG 27
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 372 KCDLCSKEFSRKGNLTKHMKLHQG 395
KC C K+F+ GNL +H+++H G
Sbjct: 4 KCRECGKQFTTSGNLKRHLRIHSG 27
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 453 KCDLCSKEFSRKGNLTKHMKLHQG 476
KC C K+F+ GNL +H+++H G
Sbjct: 4 KCRECGKQFTTSGNLKRHLRIHSG 27
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQGIRY 117
YKC C K F++KS L H+K H G R+
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERH 40
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQGIRY 171
YKC C K F++KS L H+K H G R+
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERH 40
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 564 CSKEFSRKDNLTEHKEIH-QGIRYKC--DLCSKKFSRKLNLTKHMKIHQGIRYKC---DL 617
C K F + + L H+ H Q + Y+C + C K+FS L +H K+H G Y C D
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDS 66
Query: 618 CS 619
CS
Sbjct: 67 CS 68
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 241 CLKEFSRKDNLTEHKEIH-QGIRYKC--DLCSKKFSRKLNLTKHMKIHQGIRYKC---DL 294
C K F + + L H+ H Q + Y+C + C K+FS L +H K+H G Y C D
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDS 66
Query: 295 CS 296
CS
Sbjct: 67 CS 68
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 322 CLKEFSRKDNLTEHKEIH-QGIRYKC--DLCSKKFSRKLNLTKHMKIHQGIRYKC---DL 375
C K F + + L H+ H Q + Y+C + C K+FS L +H K+H G Y C D
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDS 66
Query: 376 CS 377
CS
Sbjct: 67 CS 68
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 403 CLKEFSRKDNLTEHKEIH-QGIRYKC--DLCSKKFSRKLNLTKHMKIHQGIRYKC---DL 456
C K F + + L H+ H Q + Y+C + C K+FS L +H K+H G Y C D
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDS 66
Query: 457 CS 458
CS
Sbjct: 67 CS 68
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQGI 115
Y+C+ C K F +KS LI H++ H G+
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAGV 38
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQGI 169
Y+C+ C K F +KS LI H++ H G+
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAGV 38
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 290 YKCDLCSKEFSRKGNLTKHMKLHQG 314
Y+C C K F +KG+LT H ++H G
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTG 35
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 371 YKCDLCSKEFSRKGNLTKHMKLHQG 395
Y+C C K F +KG+LT H ++H G
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTG 35
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 452 YKCDLCSKEFSRKGNLTKHMKLHQG 476
Y+C C K F +KG+LT H ++H G
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTG 35
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQG 33
Y+C C K F +K +LT H++IH G
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTG 35
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQG 707
Y+C C K F +K +LT H+ IH G
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTG 35
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQG 60
Y+C C K F +K +LT H++IH G
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTG 35
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQG 556
Y+C C K F +K +LT H+ IH G
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTG 35
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQG 583
Y+C C K F +K +LT H+ IH G
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTG 35
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 564 CSKEFSRKDNLTEHKEIH-QGIRYKC--DLCSKKFSRKLNLTKHMKIHQGIRYKC---DL 617
C K F + + L H+ H Q + Y+C + C K+FS L +H K+H G Y C D
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDS 66
Query: 618 CS 619
CS
Sbjct: 67 CS 68
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 241 CLKEFSRKDNLTEHKEIH-QGIRYKC--DLCSKKFSRKLNLTKHMKIHQGIRYKC---DL 294
C K F + + L H+ H Q + Y+C + C K+FS L +H K+H G Y C D
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDS 66
Query: 295 CS 296
CS
Sbjct: 67 CS 68
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 322 CLKEFSRKDNLTEHKEIH-QGIRYKC--DLCSKKFSRKLNLTKHMKIHQGIRYKC---DL 375
C K F + + L H+ H Q + Y+C + C K+FS L +H K+H G Y C D
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDS 66
Query: 376 CS 377
CS
Sbjct: 67 CS 68
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 403 CLKEFSRKDNLTEHKEIH-QGIRYKC--DLCSKKFSRKLNLTKHMKIHQGIRYKC---DL 456
C K F + + L H+ H Q + Y+C + C K+FS L +H K+H G Y C D
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDS 66
Query: 457 CS 458
CS
Sbjct: 67 CS 68
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
Y+C C K F +K L+ H+ IH+G + S + G
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKPSGPSSG 46
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
+KC C K ++++ +LT+H+ +H G + S + G
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG 46
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQG 287
+KC C K ++++++LT+H ++H G
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTG 37
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQG 368
+KC C K ++++++LT+H ++H G
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTG 37
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQG 449
+KC C K ++++++LT+H ++H G
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTG 37
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQG 610
+KC C K ++++++LT+H ++H G
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTG 37
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 17/105 (16%)
Query: 881 SGPLRAVVDFPEYFGVVADALATVSTECVKAVQTATHTISKMLKSPSDAKYLTEQFKLCT 940
+GP + + E G A VS EC V I +L + + K + Q LCT
Sbjct: 266 AGPTAIITEINEKIG----AAGVVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGLCT 321
Query: 941 PLDINNAKDVSSFVESLADNIAGVVQYNKDNRESSNHITIDDLCA 985
+ + VS+ + S+ D D SN + D +C+
Sbjct: 322 ---FDGTRGVSAGIRSVVD----------DEPVKSNGLRADPMCS 353
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
Y+C C K FS+ +L +H+ +H G + S + G
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG 46
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQG 114
Y+C C K FS + LI+H+++H G
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTG 37
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQG 168
Y+C C K FS + LI+H+++H G
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTG 37
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 145 KCDL--CSKDFSYKSSLIEHKK---LHQGIRYKCN--LCSKEYFFKRNLTEHKKLHQGIR 197
CD C + FS + L HKK +HQ + C C K + FK++L EH KLH R
Sbjct: 9 PCDFPGCGRIFSNRQYLNHHKKYQHIHQ-KSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 198 -YNCDL 202
Y C+
Sbjct: 68 DYICEF 73
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 560 KCDL--CSKEFSRKDNLTEHKE---IHQGIRYKCD--LCSKKFSRKLNLTKHMKIHQGIR 612
CD C + FS + L HK+ IHQ + C C K F+ K +L +HMK+H R
Sbjct: 9 PCDFPGCGRIFSNRQYLNHHKKYQHIHQ-KSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 613 -YKCDL 617
Y C+
Sbjct: 68 DYICEF 73
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 264 KCDL--CSKKFSRKLNLTKHMK---IHQGIRYKCD--LCSKEFSRKGNLTKHMKLHQGIR 316
CD C + FS + L H K IHQ + C C K F+ K +L +HMKLH R
Sbjct: 9 PCDFPGCGRIFSNRQYLNHHKKYQHIHQ-KSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 317 -YKCDL 321
Y C+
Sbjct: 68 DYICEF 73
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 345 KCDL--CSKKFSRKLNLTKHMK---IHQGIRYKCD--LCSKEFSRKGNLTKHMKLHQGIR 397
CD C + FS + L H K IHQ + C C K F+ K +L +HMKLH R
Sbjct: 9 PCDFPGCGRIFSNRQYLNHHKKYQHIHQ-KSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 398 -YKCDL 402
Y C+
Sbjct: 68 DYICEF 73
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 426 KCDL--CSKKFSRKLNLTKHMK---IHQGIRYKCD--LCSKEFSRKGNLTKHMKLHQGIR 478
CD C + FS + L H K IHQ + C C K F+ K +L +HMKLH R
Sbjct: 9 PCDFPGCGRIFSNRQYLNHHKKYQHIHQ-KSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 479 -YKCDL 483
Y C+
Sbjct: 68 DYICEF 73
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
YKC C K F + T+H+ +H G R S + G
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG 46
Score = 29.6 bits (65), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQGIR 116
YKC C K F SS +H++LH G R
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQR 39
Score = 29.6 bits (65), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQGIR 170
YKC C K F SS +H++LH G R
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQR 39
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 198 YNCDLCSKEFSRKDNLTDHKKMHQG 222
YNC C K FSR L H+++H G
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSG 37
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
Y C C K FSR L +H+ +H G + S + G
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG 46
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 63 YKCNLCSKEFSRNCYLTEHMEQHQG 87
YKCN C K F N YL+ H H G
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTG 37
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 117 YKCNLCSKEFSRNCYLTEHMEQHQG 141
YKCN C K F N YL+ H H G
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTG 37
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 5.5, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
++CD C K F ++ L H+ IH G + S + G
Sbjct: 13 FRCDTCDKSFRQRSALNSHRMIHTGEKPSGPSSG 46
Score = 29.6 bits (65), Expect = 8.5, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIHQG 556
++CD C K F ++ L H+ IH G
Sbjct: 13 FRCDTCDKSFRQRSALNSHRMIHTG 37
Score = 29.6 bits (65), Expect = 8.5, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIHQG 583
++CD C K F ++ L H+ IH G
Sbjct: 13 FRCDTCDKSFRQRSALNSHRMIHTG 37
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
+ C C K F+ K NL H++IH G R S + G
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGPSSG 46
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQGIR 116
+ C C K F++K++LI H+K+H G R
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGER 39
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQGIR 170
+ C C K F++K++LI H+K+H G R
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGER 39
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQGIR 62
+ C+ C K F+ K NL H+KIH G R
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGER 39
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQGIR 35
+ C C K F+ K NL H+KIH G R
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGER 39
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIHQG 287
+KC+ C K FS +L+KH IH G
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAG 37
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIHQG 368
+KC+ C K FS +L+KH IH G
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAG 37
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIHQG 449
+KC+ C K FS +L+KH IH G
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAG 37
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIHQG 610
+KC+ C K FS +L+KH IH G
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAG 37
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
+KC+ C K FS +L++H+ IH G S + G
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAGENPSGPSSG 46
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQG 60
+KCN C K FS +L+ H+ IH G
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAG 37
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 30.0 bits (66), Expect = 6.4, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 507 CDLCSKEFSSKGNLTEHMK-QHQGIRYKCDLCSKEFSRKDNLTEH 550
C +C + F+SKG H++ H + C C F LT H
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
>pdb|3LBX|B Chain B, Crystal Structure Of The Erythrocyte Spectrin
Tetramerization Domain Complex
Length = 185
Score = 30.0 bits (66), Expect = 6.5, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 498 KIHQGIRYKCDLCSKEFSSKGNLTEHM--KQHQGIRYKCDLCSKEFSRKDNLTEHKEIH- 554
K HQGI + + SK FS+ L E + +QHQ + + SR+ + E E
Sbjct: 44 KYHQGINAEIETRSKNFSACLELGESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARW 103
Query: 555 QGIRYKCDLCSKEFSRKDNLTEHKEIHQGIRYKCDLCSKKFSRKLN-LTKHMKIHQGIRY 613
+ +R ++C +FSR ++ E I Q + L S F ++ + K +K H+
Sbjct: 104 ERLRMLLEVC--QFSRDASVAEAWLIAQ----EPYLASGDFGHTVDSVEKLIKRHEAFEK 157
Query: 614 KCDLCSKEFSRKDIPYEVTVKE 635
++ F+ + P + +KE
Sbjct: 158 STASWAERFAALEKPTTLELKE 179
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 290 YKCDLCSKEFSRKGNLTKHMKLHQG 314
++C C K F KGNL H ++H G
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTG 37
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 371 YKCDLCSKEFSRKGNLTKHMKLHQG 395
++C C K F KGNL H ++H G
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTG 37
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 452 YKCDLCSKEFSRKGNLTKHMKLHQG 476
++C C K F KGNL H ++H G
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTG 37
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 6.6, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQGIR 116
YKC +C K F S L++H +H G R
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGER 39
Score = 30.0 bits (66), Expect = 6.6, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQGIR 170
YKC +C K F S L++H +H G R
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGER 39
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.0 bits (66), Expect = 6.7, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQG 114
Y CD C K F + L+ H+++H G
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTG 37
Score = 30.0 bits (66), Expect = 6.7, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQG 168
Y CD C K F + L+ H+++H G
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTG 37
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQG 114
++C C K FS+ S LI H+++H G
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTG 37
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQG 168
++C C K FS+ S LI H+++H G
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTG 37
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
YKC C K F R +L H+ IH G + S + G
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG 46
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQG 60
Y+CN C K F+ K NL H++ H G
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTG 37
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLHQG 114
Y C+ C K F KS LI H+++H G
Sbjct: 11 YVCNECGKAFGLKSQLIIHERIHTG 35
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLHQG 168
Y C+ C K F KS LI H+++H G
Sbjct: 11 YVCNECGKAFGLKSQLIIHERIHTG 35
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 63 YKCNLCSKEFSRNCYLTEHMEQH 85
Y CN C K F R+ +L EH+++H
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRH 35
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 117 YKCNLCSKEFSRNCYLTEHMEQH 139
Y CN C K F R+ +L EH+++H
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRH 35
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIHQGIRVSDINHG 716
Y C+ C K F +K +L H+ IH G + S + G
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPSGPSSG 46
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 29.6 bits (65), Expect = 8.1, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 198 YNCDLCSKEFSRKDNLTDHKKMHQGNLTK 226
Y+C +C F RKD ++ H + H G++ K
Sbjct: 11 YSCPVCGLRFKRKDRMSYHVRSHDGSVGK 39
>pdb|3ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
pdb|4ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
Length = 30
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 290 YKCDLCSKEFSRKGNLTKHMK 310
Y C C+ F KGNLTKHMK
Sbjct: 3 YHCSYCNFSFKTKGNLTKHMK 23
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 371 YKCDLCSKEFSRKGNLTKHMK 391
Y C C+ F KGNLTKHMK
Sbjct: 3 YHCSYCNFSFKTKGNLTKHMK 23
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 452 YKCDLCSKEFSRKGNLTKHMK 472
Y C C+ F KGNLTKHMK
Sbjct: 3 YHCSYCNFSFKTKGNLTKHMK 23
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 505 YKCDLCSKEFSSKGNLTEHMKQ 526
Y C C+ F +KGNLT+HMK
Sbjct: 3 YHCSYCNFSFKTKGNLTKHMKS 24
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 8.7, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQG 60
Y CN C K FS +LT H+ IH G
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTG 37
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,037,888
Number of Sequences: 62578
Number of extensions: 1361053
Number of successful extensions: 8892
Number of sequences better than 100.0: 155
Number of HSP's better than 100.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 4325
Number of HSP's gapped (non-prelim): 3074
length of query: 1042
length of database: 14,973,337
effective HSP length: 109
effective length of query: 933
effective length of database: 8,152,335
effective search space: 7606128555
effective search space used: 7606128555
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)