RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3685
(1042 letters)
>gnl|CDD|218645 pfam05577, Peptidase_S28, Serine carboxypeptidase S28. These serine
proteases include several eukaryotic enzymes such as
lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase
II, and thymus-specific serine peptidase.
Length = 433
Score = 348 bits (895), Expect = e-110
Identities = 127/300 (42%), Positives = 181/300 (60%), Gaps = 5/300 (1%)
Query: 737 QKLDHFNIEEPRTWKQRYFVNSTWYKHGGPIFLMIGGEGEASAKWMVEGTWLDYAHNHNA 796
QKLDHF+ RT++QRYF N Y++GGPIFLMIGGEG SA W+ G WLD A A
Sbjct: 1 QKLDHFDPSNNRTFQQRYFYNDQHYRNGGPIFLMIGGEGPESASWVRNGHWLDLAKEFGA 60
Query: 797 LAVQVEHRFYGKSHPLSDLSVESLQYLSAEQALADLAYFITSMNTLYSLPAHTKWIAFGG 856
L +EHRFYG+S P+ DLS +L+YLS+ QALAD+A FI +MN ++ + +KWI FGG
Sbjct: 61 LVFSLEHRFYGQSKPIGDLSTANLRYLSSLQALADVASFIKAMNQKFNGLSSSKWITFGG 120
Query: 857 SYPGALAAWLRYKYPHLVHGAMSASGPLRAVVDFPEYFGVVADALATVSTECVKAVQTAT 916
SY G+LAAW R KYPHLV GA+++S PL A VDF EY VV +LA EC AV+
Sbjct: 121 SYSGSLAAWARKKYPHLVVGAVASSAPLLAKVDFKEYNMVVETSLAQTGGECYDAVENGF 180
Query: 917 HTISKMLKSPSDAKYLTEQFKLCTPLDINNAKDVSSFVESLADNIAGVVQYNKDNRESSN 976
+ ++L + + L++ +LC PL++ D+ +F ++ GVVQY D + +S
Sbjct: 181 AEVEELLLTKEGRQALSKLLQLCPPLNVTTDLDILNFFSNIYSPFQGVVQYTYDGQGNST 240
Query: 977 H--ITIDDLCALLMD-KKQDPVARYAAVNDL--ILSKEKKKNPCVDYKYEKMIEDMKNTS 1031
+I DLC ++++ D + R + L L+++ N +D Y+ ++S
Sbjct: 241 LNGYSIPDLCKIMLNATTTDLILRVEVLIQLFNYLNQKSGNNSTMDISYQLANASYGDSS 300
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 59.3 bits (143), Expect = 6e-09
Identities = 84/453 (18%), Positives = 137/453 (30%), Gaps = 40/453 (8%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIHQGIR-YKCNL--CSKEFSRKYNLTDHKKIH--QGIRY 63
C C+ FSR +LT H + H G + +C+ C K FSR L+ H + H
Sbjct: 34 DSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPSDL 93
Query: 64 KCNLCSKEFSRNCYLTEHMEQHQGIRYKCDLCSKDFSYKSSLIEHKKLHQGIRYKCNLCS 123
S+ + L S S + L + N
Sbjct: 94 NSKSLPLSNSKASSSSLSSSSSNSN-DNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLP 152
Query: 124 KEFSRNCYLTEHMEQHQGIRYKCDLCSKDFSYKSSLIEHKKLHQGIR-YKCNLCSKEYFF 182
S + + H + L S S LI + + S Y
Sbjct: 153 GNNSSSVNTPQSNSLHPPLPANS-LSKDPSSNLSLLISSNVSTSIPSSSENSPLSSSYSI 211
Query: 183 KRNLTEHKKLHQGIRYNCDLCSKEFSRKDNLTDHKKMHQGNLTKHMKLHQGIRYKCDLCL 242
+ ++ + S+ + + + + L
Sbjct: 212 PSSSSDQNLENSSSSLPLTTNSQLSPKSLL----SQSPSSLSSSDSSSSASESPRSSLPT 267
Query: 243 KEFSRK--DNLTEHKEIHQGIRYKCDLCSKKFSRKLNLTKHMK-----IHQGIRYKCD-- 293
+ E + K C+ FSR LT+H++ + C
Sbjct: 268 ASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYS 327
Query: 294 LCSKEFSRKGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTEHKEIHQGIRYKCDLCSKKF 353
LC K FSR L +H+ LH I +++ L + + + +++
Sbjct: 328 LCGKLFSRNDALKRHILLHTSIS---------PAKEKLLNSSSKFSPLLNNEPPQSLQQY 378
Query: 354 SRKLNLTKHMKIHQGIRYKCDLCSKEFSRKGNLTKHMKLH---QGIRYKCDLCLKEFSRK 410
N K + C + F R NL+ H+ H + K C K F+R
Sbjct: 379 KDLKNDKKSETLSNS-------CIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRH 431
Query: 411 DNLTEHKEIHQGIRYKCDLCSKKFSRKLNLTKH 443
NL HK+IH K F R L+L+ H
Sbjct: 432 YNLIPHKKIHTNHAPLLCSILKSFRRDLDLSNH 464
Score = 58.9 bits (142), Expect = 7e-09
Identities = 82/427 (19%), Positives = 126/427 (29%), Gaps = 41/427 (9%)
Query: 236 YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKC--DLCSKKFSRKLNLTKHMKIHQGIRYKC 292
C C FSR ++LT H H G + +C C K FSR L L++H++ H
Sbjct: 34 DSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPS-- 91
Query: 293 DLCSKEFSRKGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTEHKEIHQGIRYKCDLCSKK 352
DL SK + L + S + + +L +
Sbjct: 92 DLNSKSLPLSNSKASSSSLS-SSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNP 150
Query: 353 FSRKLNLTKHMKIHQGIRYKCD--LCSKEFSRKGNLTKHMKLHQGIRYKCDLCLKEFSRK 410
+ + + + SK+ S +L + I + S
Sbjct: 151 LPGNNSSSVNTPQSNSLHPPLPANSLSKDPSSNLSLLISSNVSTSIPSSSENSPLSSSYS 210
Query: 411 DN--LTEHKEIHQGIRYKCDLCSKKFSRKLNL-------TKHMKIHQGIRYKCDLCSKEF 461
++ + S+ + L + + L +
Sbjct: 211 IPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPRSSLPTASS 270
Query: 462 SRKGNLTKHMKLHQGI--RYKCDLCLKEFSRKDNLTDRK------IHQGIRYKCD--LCS 511
+G K C FSR LT + C LC
Sbjct: 271 QSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCG 330
Query: 512 KEFSSKGNLTEHMKQHQGIRYKC---DLCSKEFSRKDN------LTEHKEIHQGIRYKCD 562
K FS L H+ H I S +FS N L ++K++ + +
Sbjct: 331 KLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETL 390
Query: 563 L--CSKEFSRKDNLTEHKEIH---QGIRYKCDLCSKKFSRKLNLTKHMKIHQGIRYKCDL 617
C + F R NL+ H H + K CSK F+R NL H KIH
Sbjct: 391 SNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCS 450
Query: 618 CSKEFSR 624
K F R
Sbjct: 451 ILKSFRR 457
Score = 57.8 bits (139), Expect = 2e-08
Identities = 79/429 (18%), Positives = 124/429 (28%), Gaps = 41/429 (9%)
Query: 317 YKCDLCLKEFSRKDNLTEHKEIHQGIR-YKC--DLCSKKFSRKLNLTKHMKIHQGIRYKC 373
C C FSR ++LT H H G + +C C K FSR L L++H++ H
Sbjct: 34 DSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPS-- 91
Query: 374 DLCSKEFSRKGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTEHKEIHQGIRYKCDLCSKK 433
DL SK + L + S + + +L +
Sbjct: 92 DLNSKSLPLSNSKASSSSLS-SSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNP 150
Query: 434 FSRKLNLTKHMKIHQGIRYKCD---LCSKEFSRKGNLTKHMKLHQGIRYKCDLCLKEFSR 490
+ + + + L S L + L
Sbjct: 151 LPGNNSSSVNTPQSNSLHPPLPANSLSKDPSSNLSLLISSNVSTSIPSSSENSPLSSSYS 210
Query: 491 KDNLTDRKI--HQGIRYKCDLCSKEFSSKGNLTEHMKQHQGIRYKCDLCSKEFSRKDNLT 548
+ + + + S S +L + E R T
Sbjct: 211 IPSSSSDQNLENSSSSLPLTTNS--QLSPKSLLSQSPSSLSSSDSS-SSASESPRSSLPT 267
Query: 549 EH------------KEIHQGIRYKCDLCSKEFSRKDNLTEHK-----EIHQGIRYKCD-- 589
E + K C+ FSR LT H + C
Sbjct: 268 ASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYS 327
Query: 590 LCSKKFSRKLNLTKHMKIHQGIRYKC---DLCSKEFSRKDIPYEVTVKEESYEGDSINVE 646
LC K FSR L +H+ +H I S +FS ++ + +
Sbjct: 328 LCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKS 387
Query: 647 ENNGNDAVTRDCLEFFKTEQNTTLGKLNKILHQDIRYKCDLCSKDFSRKDNLTEHKEIHQ 706
E N C+ FK + N +L + + + K CSK F+R NL HK+IH
Sbjct: 388 ETLSNS-----CIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHT 442
Query: 707 GIRVSDINH 715
+
Sbjct: 443 NHAPLLCSI 451
Score = 52.0 bits (124), Expect = 1e-06
Identities = 86/483 (17%), Positives = 139/483 (28%), Gaps = 67/483 (13%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIHQGIR-YKCNL--CSKEFSRNCYLTEHMEQHQGIRYKC 92
C C+ FSR +LT H + H G + +C+ C K FSR L+ H+ H
Sbjct: 34 DSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTH------- 86
Query: 93 DLCSKDFSYKSSLIEHKKLHQGIRYKCNLCSKEFSRNCYLTEHMEQHQGIRYKCDLCSKD 152
+ S +S + + S + N L R
Sbjct: 87 ---HNNPSDLNSKSLPLSNSKASSSSLSSSSSNSNDN-NLLSSHSLPPSSRDP----QLP 138
Query: 153 FSYKSSLIEHKKLHQGIRYKCNLCSKEYFFKRNLTEHKKLHQGIRYNCDLCSKEFSRKDN 212
S + + L N + + L SK+ S +
Sbjct: 139 DLLSISNLRNNPLPGNNSSSVN--TPQSNSLHPPLPANSL-----------SKDPSSNLS 185
Query: 213 LTDHKKMHQGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTEHKEIHQGIRYKCDLCSKKF 272
L + + Y + + +++ + L S+
Sbjct: 186 LLISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSP 245
Query: 273 SRKLNLTKHMKIHQGIRYKCDLCSKEFSRKGNLTKHMKLHQGI--RYKCDLCLKEFSRKD 330
S + + L + +G K C FSR
Sbjct: 246 SSLSS--SDSSSSASESPRSSLPTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSS 303
Query: 331 NLTEHK-----EIHQGIRYKCD--LCSKKFSRKLNLTKHMKIHQGIR-YKCDLCSKEFSR 382
LT H + C LC K FSR L +H+ +H I K L +
Sbjct: 304 PLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKF 363
Query: 383 KGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTEHKEIHQGIRYKCDL--CSKKFSRKLNL 440
L +L ++K++ + + C + F R NL
Sbjct: 364 SPLLNN-------------------EPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNL 404
Query: 441 TKHMKIH---QGIRYKCDLCSKEFSRKGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTDR 497
+ H+ H + K CSK F+R NL H K+H LK F R +L++
Sbjct: 405 SLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRRDLDLSNH 464
Query: 498 KIH 500
Sbjct: 465 GKD 467
Score = 49.7 bits (118), Expect = 5e-06
Identities = 78/454 (17%), Positives = 121/454 (26%), Gaps = 70/454 (15%)
Query: 198 YNCDLCSKEFSRKDNLTDHKKMHQGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTEHKEI 257
+C C+ FSR ++LT H + H G C K FSR L+ H
Sbjct: 34 DSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSY--------SGCDKSFSRPLELSRHLRT 85
Query: 258 H--QGIRYKCDLCSK--------------KFSRKLNLTKHMKIHQGIRY--------KCD 293
H S NL + R +
Sbjct: 86 HHNNPSDLNSKSLPLSNSKASSSSLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISN 145
Query: 294 LCSKEFSRKGNLTKHMKLHQGIRYKCD---LCLKEFSRKDNLTEHKEIHQGIRYKCDLCS 350
L + + + + + L S L +
Sbjct: 146 LRNNPLPGNNSSSVNTPQSNSLHPPLPANSLSKDPSSNLSLLISSNVSTSIPSSSENSPL 205
Query: 351 KKFSRKLNL-TKHMKIHQGIRYKCDLCSKEF-------SRKGNLTKHMKLHQGIRYKCDL 402
+ + + S+ S + + L
Sbjct: 206 SSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPRSSL 265
Query: 403 CLKEFSRK--DNLTEHKEIHQGIRYKCDLCSKKFSRKLNLTKHMK-----IHQGIRYKCD 455
+ E + K C+ FSR LT+H++ + C
Sbjct: 266 PTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCP 325
Query: 456 --LCSKEFSRKGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTDRKIHQGIRYKCDLCSKE 513
LC K FSR L +H+ LH I K + K + + ++
Sbjct: 326 YSLCGKLFSRNDALKRHILLHTSIS--------PAKEKLLNSSSKFSPLLNNEPPQSLQQ 377
Query: 514 FSSKGNLTEHMKQHQGIRYKCDLCSKEFSRKDNLTEHKEIH---QGIRYKCDLCSKEFSR 570
+ N + C + F R NL+ H H + K CSK F+R
Sbjct: 378 YKDLKNDKKSETLSNS-------CIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNR 430
Query: 571 KDNLTEHKEIHQGIRYKCDLCSKKFSRKLNLTKH 604
NL HK+IH K F R L+L+ H
Sbjct: 431 HYNLIPHKKIHTNHAPLLCSILKSFRRDLDLSNH 464
Score = 42.4 bits (99), Expect = 0.001
Identities = 44/177 (24%), Positives = 64/177 (36%), Gaps = 21/177 (11%)
Query: 9 YKCDLCSKEFSRKYNLTDHKK-----IHQGIRYKC--NLCSKEFSRKYNLTDHKKIHQGI 61
K C+ FSR LT H + + C +LC K FSR L H +H I
Sbjct: 290 IKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSI 349
Query: 62 RYKCNL---CSKEFSR--NCYLTEHMEQHQGIRYK----CDL--CSKDFSYKSSLIEHKK 110
S +FS N + ++Q++ ++ C ++F S+L H
Sbjct: 350 SPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHII 409
Query: 111 LH---QGIRYKCNLCSKEFSRNCYLTEHMEQHQGIRYKCDLCSKDFSYKSSLIEHKK 164
H + K CSK F+R+ L H + H K F L H K
Sbjct: 410 THLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRRDLDLSNHGK 466
>gnl|CDD|201306 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 226
Score = 42.9 bits (101), Expect = 4e-04
Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 12/91 (13%)
Query: 803 HRFYGKSHPLSDLSVESLQYLSAEQALADLAYFITSMNTLYSLPAHTKWIAFGGSYPGAL 862
R +G+S P D + + DL + ++ K G S G +
Sbjct: 8 LRGFGRSSPPKDFA-----DYRFDDLAEDLEALLDALG-------LDKVNLVGHSMGGLI 55
Query: 863 AAWLRYKYPHLVHGAMSASGPLRAVVDFPEY 893
A KYP V + A + P
Sbjct: 56 ALAYAAKYPDRVKALVLVGTVHPAGLSSPLT 86
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 40.5 bits (95), Expect = 0.001
Identities = 28/114 (24%), Positives = 39/114 (34%), Gaps = 18/114 (15%)
Query: 791 AHNHNALAVQVEHRFYGKSHPLSDLSVESLQYLSAEQALADLAYFITSMNTLYSLPAHTK 850
A + LA + +G S S E ADLA + ++
Sbjct: 22 AAGYRVLAP--DLPGHGDSDGPPRT------PYSLEDDAADLAALLDALG-------LGP 66
Query: 851 WIAFGGSYPGALAAWLRYKYPHLVHGAMSASGPLRAVVDFPEYFGVVADALATV 904
+ G S GA+A + P V G + S PLR D E A AL +
Sbjct: 67 VVLVGHSLGGAVALAAAARRPERVAGLVLISPPLR---DLEELLAADAAALLAL 117
>gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta
hydrolase superfamily) [General function prediction
only].
Length = 282
Score = 40.4 bits (93), Expect = 0.003
Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 19/127 (14%)
Query: 761 YKHGGPIFLMIGGEGEASAKWMVEGTWL-DYAHNHNALAVQVEHRFYGKSHPLSDLSVES 819
GGP +++ G +S+ W L A + +A + R +G+S P
Sbjct: 17 AGGGGPPLVLLHGFPGSSSVWRPVFKVLPALAARYRVIAPDL--RGHGRSDPAGY----- 69
Query: 820 LQYLSAEQALADLAYFITSMNTLYSLPAHTKWIAFGGSYPGALAAWLRYKYPHLVHGAMS 879
S DLA + ++ K + G S GA+A L ++P V G +
Sbjct: 70 ----SLSAYADDLAALLDALG-------LEKVVLVGHSMGGAVALALALRHPDRVRGLVL 118
Query: 880 ASGPLRA 886
Sbjct: 119 IGPAPPP 125
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 31.7 bits (72), Expect = 0.094
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 505 YKCDLCSKEFSSKGNLTEHMKQH 527
Y+C C K F SK L EHM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 30.9 bits (70), Expect = 0.14
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIH 285
Y+C C K F K L +HM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 30.9 bits (70), Expect = 0.14
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIH 366
Y+C C K F K L +HM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 30.9 bits (70), Expect = 0.14
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIH 447
Y+C C K F K L +HM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 30.9 bits (70), Expect = 0.14
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIH 608
Y+C C K F K L +HM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 30.5 bits (69), Expect = 0.24
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 290 YKCDLCSKEFSRKGNLTKHMKLH 312
Y+C C K F K L +HM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 30.5 bits (69), Expect = 0.24
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 371 YKCDLCSKEFSRKGNLTKHMKLH 393
Y+C C K F K L +HM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 30.5 bits (69), Expect = 0.24
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 452 YKCDLCSKEFSRKGNLTKHMKLH 474
Y+C C K F K L +HM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 29.4 bits (66), Expect = 0.55
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 36 YKCNLCSKEFSRKYNLTDHKKIH 58
Y+C C K F K L +H + H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 29.4 bits (66), Expect = 0.62
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIH 31
Y+C C K F K L +H + H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 29.0 bits (65), Expect = 0.81
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 532 YKCDLCSKEFSRKDNLTEHKEIH 554
Y+C C K F K L EH H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 29.0 bits (65), Expect = 0.81
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 559 YKCDLCSKEFSRKDNLTEHKEIH 581
Y+C C K F K L EH H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 28.6 bits (64), Expect = 0.99
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 63 YKCNLCSKEFSRNCYLTEHMEQH 85
Y+C C K F L EHM H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 28.6 bits (64), Expect = 0.99
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 117 YKCNLCSKEFSRNCYLTEHMEQH 139
Y+C C K F L EHM H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 28.2 bits (63), Expect = 1.4
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 198 YNCDLCSKEFSRKDNLTDHKKMH 220
Y C C K F K L +H + H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 28.2 bits (63), Expect = 1.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLH 112
Y+C C K F KS+L EH + H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 28.2 bits (63), Expect = 1.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLH 166
Y+C C K F KS+L EH + H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 27.8 bits (62), Expect = 2.0
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 683 YKCDLCSKDFSRKDNLTEHKEIH 705
Y+C C K F K L EH H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 27.4 bits (61), Expect = 2.8
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 236 YKCDLCLKEFSRKDNLTEHKEIH 258
Y+C C K F K L EH H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 27.4 bits (61), Expect = 2.8
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 317 YKCDLCLKEFSRKDNLTEHKEIH 339
Y+C C K F K L EH H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 27.4 bits (61), Expect = 2.8
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 398 YKCDLCLKEFSRKDNLTEHKEIH 420
Y+C C K F K L EH H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|220546 pfam10060, DUF2298, Uncharacterized membrane protein (DUF2298).
This domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 413
Score = 35.5 bits (82), Expect = 0.14
Identities = 22/110 (20%), Positives = 30/110 (27%), Gaps = 21/110 (19%)
Query: 815 LSVESLQYLSAEQALADLAYFITSM-----NTLYSLPA--------HTKWIAFGGSYPGA 861
L+ L L+ A +T+ P H +A
Sbjct: 142 LAAALLSGLAFLAAANLGYTSYWDSSRVIPDTINEFPLFSFLLGDLHAHMLAIPFLLLAL 201
Query: 862 LAAWLRY-----KYPHLVHGAMSASGPLRAVV---DFPEYFGVVADALAT 903
A Y K L+ + S L DFP YFG+ AL
Sbjct: 202 ALALAIYRRKEEKRRILLLLLLGLSLGLLFASNSWDFPVYFGLALLALLL 251
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 33.7 bits (77), Expect = 0.16
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 11/51 (21%)
Query: 505 YKCDLCSKEFSSKGNLTEHMKQHQGIRY-----KCDLCSKEFSRKDNLTEH 550
Y C LC FSS +L +H IRY C +C KEF D+ +H
Sbjct: 74 YVCPLCLMPFSSSVSLKQH------IRYTEHSKVCPVCGKEFRNTDSTLDH 118
Score = 33.3 bits (76), Expect = 0.17
Identities = 34/138 (24%), Positives = 52/138 (37%), Gaps = 31/138 (22%)
Query: 80 EHMEQHQGIRYKCDLCSKDFS-YKSSLIEHKKLHQGIRYKCNLCSKEFSRNCYLTEHMEQ 138
+++ H+GI + ++ Y S E K+L + + + + YL + +
Sbjct: 11 KYLSNHKGIFIH--VTLEELKRYHSLTPEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTS 68
Query: 139 HQGIRYKCDLCSKDFSYKSSLIEHKKLHQGIRYKCNLCSKEYFFKRNLTEHKKLHQGIRY 198
Y C LC FS SL +H IRY TEH K+
Sbjct: 69 KAVSPYVCPLCLMPFSSSVSLKQH------IRY---------------TEHSKV------ 101
Query: 199 NCDLCSKEFSRKDNLTDH 216
C +C KEF D+ DH
Sbjct: 102 -CPVCGKEFRNTDSTLDH 118
Score = 33.3 bits (76), Expect = 0.22
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 22/120 (18%)
Query: 27 HKKIHQGIRYKCNLCSKEFSRKYNLTDHKK-----IHQGIRYKCNLCSKEFSRNCYLTEH 81
+ H+GI ++ +E R ++LT +K + + + Y L + YL +
Sbjct: 12 YLSNHKGIFI--HVTLEELKRYHSLTPEQKRLIRAVVKTLIYNPQL----LDESSYLYKL 65
Query: 82 MEQHQGIRYKCDLCSKDFSYKSSLIEHKKLHQGIRY-----KCNLCSKEFSRNCYLTEHM 136
+ Y C LC FS SL +H IRY C +C KEF +H+
Sbjct: 66 LTSKAVSPYVCPLCLMPFSSSVSLKQH------IRYTEHSKVCPVCGKEFRNTDSTLDHV 119
Score = 32.5 bits (74), Expect = 0.35
Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 23/120 (19%)
Query: 469 KHMKLHQGIRYKCDLCLKEFSRKDNLTD------RKIHQGIRYKCDLCSKEFSSKGNLTE 522
K++ H+GI + L+E R +LT R + + + Y L L +
Sbjct: 11 KYLSNHKGIFIH--VTLEELKRYHSLTPEQKRLIRAVVKTLIYNPQL----LDESSYLYK 64
Query: 523 HMKQHQGIRYKCDLCSKEFSRKDNLTEHKEIHQGIRY-----KCDLCSKEFSRKDNLTEH 577
+ Y C LC FS +L +H IRY C +C KEF D+ +H
Sbjct: 65 LLTSKAVSPYVCPLCLMPFSSSVSLKQH------IRYTEHSKVCPVCGKEFRNTDSTLDH 118
Score = 30.2 bits (68), Expect = 2.4
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 11/55 (20%)
Query: 479 YKCDLCLKEFSRKDNLTDRKIHQGIRY-----KCDLCSKEFSSKGNLTEHM-KQH 527
Y C LCL FS +L Q IRY C +C KEF + + +H+ K+H
Sbjct: 74 YVCPLCLMPFSSSVSLK-----QHIRYTEHSKVCPVCGKEFRNTDSTLDHVCKKH 123
Score = 29.8 bits (67), Expect = 3.1
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 22/121 (18%)
Query: 280 KHMKIHQGIRYKCDLCSKEFSRKGNLTKHMK-----LHQGIRYKCDLCLKEFSRKDNLTE 334
K++ H+GI + +E R +LT K + + + Y L L E S L
Sbjct: 11 KYLSNHKGIFIH--VTLEELKRYHSLTPEQKRLIRAVVKTLIYNPQL-LDESSYLYKLLT 67
Query: 335 HKEIHQGIRYKCDLCSKKFSRKLNLTKHMKIHQGIRY-----KCDLCSKEFSRKGNLTKH 389
K + Y C LC FS ++L +H IRY C +C KEF + H
Sbjct: 68 SKAVSP---YVCPLCLMPFSSSVSLKQH------IRYTEHSKVCPVCGKEFRNTDSTLDH 118
Query: 390 M 390
+
Sbjct: 119 V 119
Score = 29.8 bits (67), Expect = 3.1
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 22/121 (18%)
Query: 361 KHMKIHQGIRYKCDLCSKEFSRKGNLTKHMK-----LHQGIRYKCDLCLKEFSRKDNLTE 415
K++ H+GI + +E R +LT K + + + Y L L E S L
Sbjct: 11 KYLSNHKGIFIH--VTLEELKRYHSLTPEQKRLIRAVVKTLIYNPQL-LDESSYLYKLLT 67
Query: 416 HKEIHQGIRYKCDLCSKKFSRKLNLTKHMKIHQGIRY-----KCDLCSKEFSRKGNLTKH 470
K + Y C LC FS ++L +H IRY C +C KEF + H
Sbjct: 68 SKAVSP---YVCPLCLMPFSSSVSLKQH------IRYTEHSKVCPVCGKEFRNTDSTLDH 118
Query: 471 M 471
+
Sbjct: 119 V 119
Score = 29.5 bits (66), Expect = 3.5
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 22/115 (19%)
Query: 522 EHMKQHQGIRYKCDLCSKEFSRKDNLTEHKE-----IHQGIRYKCDLCSKEFSRKDNLTE 576
+++ H+GI + +E R +LT ++ + + + Y L E S L
Sbjct: 11 KYLSNHKGIFIH--VTLEELKRYHSLTPEQKRLIRAVVKTLIYNPQLLD-ESSYLYKLLT 67
Query: 577 HKEIHQGIRYKCDLCSKKFSRKLNLTKHMKIHQGIRY-----KCDLCSKEFSRKD 626
K + Y C LC FS ++L +H IRY C +C KEF D
Sbjct: 68 SKAVSP---YVCPLCLMPFSSSVSLKQH------IRYTEHSKVCPVCGKEFRNTD 113
Score = 28.7 bits (64), Expect = 7.8
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 11/52 (21%)
Query: 236 YKCDLCLKEFSRKDNLTEHKEIHQGIRY-----KCDLCSKKFSRKLNLTKHM 282
Y C LCL FS +L +H IRY C +C K+F + H+
Sbjct: 74 YVCPLCLMPFSSSVSLKQH------IRYTEHSKVCPVCGKEFRNTDSTLDHV 119
>gnl|CDD|221755 pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 copies). This
family contains two copies of a C2H2-like zinc finger
domain.
Length = 100
Score = 32.6 bits (75), Expect = 0.20
Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 22/101 (21%)
Query: 454 CDLCSKEFSRKGNLTKHMKLHQGIRYKCDLCLKEFSRKDNLTD---------RKIHQGIR 504
C C+ +HM G ++ L D KIH+G
Sbjct: 2 CLFCNHTSDTVEENLEHMFKSHGFF---------IPEREYLVDLEGLLNYLREKIHEG-- 50
Query: 505 YKCDLCSKEFSSKGNLTEHM--KQHQGIRYKCDLCSKEFSR 543
+C C K+F S L +HM K H I Y+ + E +
Sbjct: 51 NECLYCGKQFKSLEALRQHMRDKGHCKIPYETEEEKDEIAE 91
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys. The
C2H2 zinc finger is composed of two short beta strands
followed by an alpha helix. The amino terminal part of
the helix binds the major groove in DNA binding zinc
fingers. The accepted consensus binding sequence for Sp1
is usually defined by the asymmetric hexanucleotide core
GGGCGG but this sequence does not include, among others,
the GAG (=CTC) repeat that constitutes a high-affinity
site for Sp1 binding to the wt1 promoter.
Length = 22
Score = 30.4 bits (69), Expect = 0.20
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 291 KCDLCSKEFSRKGNLTKHMKLH 312
KC C K FSRK NL +H++ H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 30.4 bits (69), Expect = 0.20
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 372 KCDLCSKEFSRKGNLTKHMKLH 393
KC C K FSRK NL +H++ H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 30.4 bits (69), Expect = 0.20
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 453 KCDLCSKEFSRKGNLTKHMKLH 474
KC C K FSRK NL +H++ H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 30.0 bits (68), Expect = 0.35
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 264 KCDLCSKKFSRKLNLTKHMKIH 285
KC C K FSRK NL +H++ H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 30.0 bits (68), Expect = 0.35
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 345 KCDLCSKKFSRKLNLTKHMKIH 366
KC C K FSRK NL +H++ H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 30.0 bits (68), Expect = 0.35
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 426 KCDLCSKKFSRKLNLTKHMKIH 447
KC C K FSRK NL +H++ H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 30.0 bits (68), Expect = 0.35
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 587 KCDLCSKKFSRKLNLTKHMKIH 608
KC C K FSRK NL +H++ H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 29.2 bits (66), Expect = 0.61
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 37 KCNLCSKEFSRKYNLTDHKKIH 58
KC C K FSRK NL H + H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 28.9 bits (65), Expect = 0.82
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 10 KCDLCSKEFSRKYNLTDHKKIH 31
KC C K FSRK NL H + H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 28.1 bits (63), Expect = 1.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 200 CDLCSKEFSRKDNLTDHKKMH 220
C C K FSRK NL H + H
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
Score = 28.1 bits (63), Expect = 1.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 506 KCDLCSKEFSSKGNLTEHMKQH 527
KC C K FS K NL H++ H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 27.7 bits (62), Expect = 2.0
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 533 KCDLCSKEFSRKDNLTEHKEIH 554
KC C K FSRK NL H H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 27.7 bits (62), Expect = 2.0
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 560 KCDLCSKEFSRKDNLTEHKEIH 581
KC C K FSRK NL H H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 27.3 bits (61), Expect = 2.9
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 684 KCDLCSKDFSRKDNLTEHKEIH 705
KC C K FSRK NL H H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 26.9 bits (60), Expect = 3.3
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 237 KCDLCLKEFSRKDNLTEHKEIH 258
KC C K FSRK NL H H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 26.9 bits (60), Expect = 3.3
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 318 KCDLCLKEFSRKDNLTEHKEIH 339
KC C K FSRK NL H H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 26.9 bits (60), Expect = 3.3
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 399 KCDLCLKEFSRKDNLTEHKEIH 420
KC C K FSRK NL H H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 25.8 bits (57), Expect = 8.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 91 KCDLCSKDFSYKSSLIEHKKLH 112
KC C K FS KS+L H + H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 25.8 bits (57), Expect = 8.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 145 KCDLCSKDFSYKSSLIEHKKLH 166
KC C K FS KS+L H + H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger.
Length = 27
Score = 30.3 bits (69), Expect = 0.28
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 198 YNCDLCSKEFSRKDNLTDHKKMH 220
+ C +C K FS L HKK H
Sbjct: 2 HTCGVCGKTFSSLQALGGHKKSH 24
Score = 29.9 bits (68), Expect = 0.40
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 90 YKCDLCSKDFSYKSSLIEHKKLH 112
+ C +C K FS +L HKK H
Sbjct: 2 HTCGVCGKTFSSLQALGGHKKSH 24
Score = 29.9 bits (68), Expect = 0.40
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 144 YKCDLCSKDFSYKSSLIEHKKLH 166
+ C +C K FS +L HKK H
Sbjct: 2 HTCGVCGKTFSSLQALGGHKKSH 24
Score = 29.5 bits (67), Expect = 0.57
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 505 YKCDLCSKEFSSKGNLTEHMKQH 527
+ C +C K FSS L H K H
Sbjct: 2 HTCGVCGKTFSSLQALGGHKKSH 24
Score = 27.2 bits (61), Expect = 3.4
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 532 YKCDLCSKEFSRKDNLTEHK 551
+ C +C K FS L HK
Sbjct: 2 HTCGVCGKTFSSLQALGGHK 21
Score = 27.2 bits (61), Expect = 3.4
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 559 YKCDLCSKEFSRKDNLTEHK 578
+ C +C K FS L HK
Sbjct: 2 HTCGVCGKTFSSLQALGGHK 21
Score = 26.4 bits (59), Expect = 5.4
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 683 YKCDLCSKDFSRKDNLTEHK 702
+ C +C K FS L HK
Sbjct: 2 HTCGVCGKTFSSLQALGGHK 21
Score = 26.4 bits (59), Expect = 5.8
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 236 YKCDLCLKEFSRKDNLTEHK 255
+ C +C K FS L HK
Sbjct: 2 HTCGVCGKTFSSLQALGGHK 21
Score = 26.4 bits (59), Expect = 5.8
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 317 YKCDLCLKEFSRKDNLTEHK 336
+ C +C K FS L HK
Sbjct: 2 HTCGVCGKTFSSLQALGGHK 21
Score = 26.4 bits (59), Expect = 5.8
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 398 YKCDLCLKEFSRKDNLTEHK 417
+ C +C K FS L HK
Sbjct: 2 HTCGVCGKTFSSLQALGGHK 21
>gnl|CDD|150251 pfam09512, ThiW, Thiamine-precursor transporter protein (ThiW).
Levels of thiamine pyrophosphate (TPP) or thiamine
regulate transcription or translation of a number of
thiamine biosynthesis, salvage, or transport genes in a
wide range of prokaryotes. The mechanism involves direct
binding, with no protein involved, to a structural
element called THI found in the untranslated upstream
region of thiamine metabolism gene operons. This element
is called a riboswitch and is seen also for other
metabolites such as FMN and glycine. This protein family
consists of proteins identified in operons controlled by
the THI riboswitch and designated ThiW. The hydrophobic
nature of this protein and reconstructed metabolic
background suggests that this protein acts in transport
of a thiazole precursor of thiamine.
Length = 150
Score = 33.0 bits (76), Expect = 0.30
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 853 AFGGSYPGALAAWLRYKY 870
AF GS GAL A L Y+Y
Sbjct: 68 AFPGSMFGALLAGLLYRY 85
>gnl|CDD|114306 pfam05576, Peptidase_S37, PS-10 peptidase S37. These serine
proteases have been found in Streptomyces species.
Length = 448
Score = 34.4 bits (78), Expect = 0.32
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 799 VQVEHRFYGKSHPL-SDLSVESLQYLSAEQALADLAYFITSMNTLYSLPAHTKWIAFGGS 857
V +E+R++ S P +D S L QA +D ++ LYS WI+ GGS
Sbjct: 92 VSMEYRYFTPSRPAPADWS-----KLDIWQAASDQHRIFKALKPLYS----KNWISTGGS 142
Query: 858 YPGALAAWLRYKYPHLVHGAMSASGP 883
G A + YP + G ++ P
Sbjct: 143 KGGMTATYYERFYPRDMDGVVAYVAP 168
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 30.1 bits (68), Expect = 0.35
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 277 NLTKHMKIHQGIR-YKCDLCSKEFSR 301
NL +HM+ H G + YKC +C K FS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 30.1 bits (68), Expect = 0.35
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 358 NLTKHMKIHQGIR-YKCDLCSKEFSR 382
NL +HM+ H G + YKC +C K FS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 30.1 bits (68), Expect = 0.35
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 439 NLTKHMKIHQGIR-YKCDLCSKEFSR 463
NL +HM+ H G + YKC +C K FS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 30.1 bits (68), Expect = 0.35
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 600 NLTKHMKIHQGIR-YKCDLCSKEFSR 624
NL +HM+ H G + YKC +C K FS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 28.9 bits (65), Expect = 0.91
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 519 NLTEHMKQHQGIR-YKCDLCSKEFSR 543
NL HM+ H G + YKC +C K FS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 27.0 bits (60), Expect = 3.4
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 223 NLTKHMKLHQGIR-YKCDLCLKEFSR 247
NL +HM+ H G + YKC +C K FS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 27.0 bits (60), Expect = 3.4
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 304 NLTKHMKLHQGIR-YKCDLCLKEFSR 328
NL +HM+ H G + YKC +C K FS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 27.0 bits (60), Expect = 3.4
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 385 NLTKHMKLHQGIR-YKCDLCLKEFSR 409
NL +HM+ H G + YKC +C K FS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 27.0 bits (60), Expect = 3.4
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 466 NLTKHMKLHQGIR-YKCDLCLKEFSR 490
NL +HM+ H G + YKC +C K FS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 26.6 bits (59), Expect = 5.2
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 23 NLTDHKKIHQGIR-YKCNLCSKEFSR 47
NL H + H G + YKC +C K FS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 26.6 bits (59), Expect = 5.2
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 50 NLTDHKKIHQGIR-YKCNLCSKEFSR 74
NL H + H G + YKC +C K FS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 26.6 bits (59), Expect = 5.4
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 250 NLTEHKEIHQGIR-YKCDLCSKKFSR 274
NL H H G + YKC +C K FS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 26.6 bits (59), Expect = 5.4
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 331 NLTEHKEIHQGIR-YKCDLCSKKFSR 355
NL H H G + YKC +C K FS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 26.6 bits (59), Expect = 5.4
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 412 NLTEHKEIHQGIR-YKCDLCSKKFSR 436
NL H H G + YKC +C K FS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 26.6 bits (59), Expect = 5.4
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 573 NLTEHKEIHQGIR-YKCDLCSKKFSR 597
NL H H G + YKC +C K FS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 26.6 bits (59), Expect = 5.7
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 546 NLTEHKEIHQGIR-YKCDLCSKEFSR 570
NL H H G + YKC +C K FS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 26.2 bits (58), Expect = 7.3
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 77 YLTEHMEQHQGIR-YKCDLCSKDFSY 101
L HM H G + YKC +C K FS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 26.2 bits (58), Expect = 7.3
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 131 YLTEHMEQHQGIR-YKCDLCSKDFSY 155
L HM H G + YKC +C K FS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family contains
a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 28.4 bits (63), Expect = 1.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 505 YKCDLCSKEFSSKGNLTEHMKQH 527
+KC LC K FSSK L H+++H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 27.6 bits (61), Expect = 2.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 290 YKCDLCSKEFSRKGNLTKHMKLH 312
+KC LC K FS K L +H++ H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 27.6 bits (61), Expect = 2.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 371 YKCDLCSKEFSRKGNLTKHMKLH 393
+KC LC K FS K L +H++ H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 27.6 bits (61), Expect = 2.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 452 YKCDLCSKEFSRKGNLTKHMKLH 474
+KC LC K FS K L +H++ H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 27.6 bits (61), Expect = 2.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 263 YKCDLCSKKFSRKLNLTKHMKIH 285
+KC LC K FS K L +H++ H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 27.6 bits (61), Expect = 2.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 344 YKCDLCSKKFSRKLNLTKHMKIH 366
+KC LC K FS K L +H++ H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 27.6 bits (61), Expect = 2.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 425 YKCDLCSKKFSRKLNLTKHMKIH 447
+KC LC K FS K L +H++ H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 27.6 bits (61), Expect = 2.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 586 YKCDLCSKKFSRKLNLTKHMKIH 608
+KC LC K FS K L +H++ H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 26.1 bits (57), Expect = 9.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 63 YKCNLCSKEFSRNCYLTEHMEQH 85
+KC LC K FS L H+ +H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 26.1 bits (57), Expect = 9.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 117 YKCNLCSKEFSRNCYLTEHMEQH 139
+KC LC K FS L H+ +H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 25.7 bits (56), Expect = 9.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 9 YKCDLCSKEFSRKYNLTDHKKIH 31
+KC LC K FS K L H + H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
>gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis,
outer membrane].
Length = 374
Score = 31.5 bits (72), Expect = 2.3
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 155 YKSSLIEHKKLHQGIRYKC---NLCSKEYFFKRNLTEHKKLHQGIRYNCDLCSKEFSR 209
Y+S E ++L+ G N + + R +TE K ++ + S+E+ R
Sbjct: 252 YRSLDFEWERLNTGDFQGTAVMNYPDLDVPYTR-ITEFKHFTPERDHDQTVISREYPR 308
>gnl|CDD|187810 cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Multidomain protein with permuted HD nuclease domain,
palm domain and Zn-ribbon; MTH326-like has inactivated
polymerase catalytic domain; alr1562 and slr7011 -
predicted only on the basis of size, presence of HD
domain, and location with RAMPs in one operon; signature
gene for type III; also known as Crm2 family.
Length = 475
Score = 31.3 bits (71), Expect = 3.3
Identities = 15/102 (14%), Positives = 29/102 (28%), Gaps = 2/102 (1%)
Query: 107 EHKKLHQGIRYKCNLCSKEFS-RNCYLTEHMEQHQGIRYKCDLCSKDFSYKSSLIEHKKL 165
K ++ + L + R + +K + ++ +S + + L
Sbjct: 187 SEKYKEFLLKKRNGLLLDKLGGRARKEYRSVCGLLAAAWKLEKETEQYSLFAKDDLEEDL 246
Query: 166 HQGIRYKCNLCSKEYFFKRNLTEHKKLHQGIRYNCDLCSKEF 207
+ LC KR L E K + SK
Sbjct: 247 KLLLEAGERLCPL-CLIKRLLPERLKEKLVLIDEVIKRSKRN 287
>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in
Escherichia coli inclusion body-associated proteins
IbpA and IbpB, and similar proteins. IbpA and IbpB are
16 kDa small heat shock proteins (sHsps). sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. IbpA and IbpB are produced during high-level
production of various heterologous proteins,
specifically human prorenin, renin and bovine
insulin-like growth factor 2 (bIGF-2), and are strongly
associated with inclusion bodies containing these
heterologous proteins. IbpA and IbpB work as an
integrated system to stabilize thermally aggregated
proteins in a disaggregation competent state. The
chaperone activity of IbpB is also significantly
elevated as the temperature increases from normal to
heat shock. The high temperature results in the
disassociation of 2-3-MDa IbpB oligomers into smaller
approximately 600-kDa structures. This elevated
activity seen under heat shock conditions is retained
for an extended period of time after the temperature is
returned to normal. IbpA also forms multimers.
Length = 90
Score = 28.7 bits (65), Expect = 3.6
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 26 DHKKIHQGIRYKCNLCSKEFSRKYNLTDHKKI 57
+ + +H+GI + F R +NL DH K+
Sbjct: 49 EREYLHRGIAKR------AFERSFNLADHVKV 74
Score = 28.3 bits (64), Expect = 5.2
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Query: 247 RKDNLTEHKE-IHQGIRYKCDLCSKKFSRKLNLTKHMKI 284
+ D E +E +H+GI + F R NL H+K+
Sbjct: 42 KADEENEEREYLHRGIAKR------AFERSFNLADHVKV 74
Score = 28.3 bits (64), Expect = 5.2
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Query: 328 RKDNLTEHKE-IHQGIRYKCDLCSKKFSRKLNLTKHMKI 365
+ D E +E +H+GI + F R NL H+K+
Sbjct: 42 KADEENEEREYLHRGIAKR------AFERSFNLADHVKV 74
Score = 28.3 bits (64), Expect = 5.2
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Query: 409 RKDNLTEHKE-IHQGIRYKCDLCSKKFSRKLNLTKHMKI 446
+ D E +E +H+GI + F R NL H+K+
Sbjct: 42 KADEENEEREYLHRGIAKR------AFERSFNLADHVKV 74
Score = 28.3 bits (64), Expect = 5.2
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Query: 570 RKDNLTEHKE-IHQGIRYKCDLCSKKFSRKLNLTKHMKI 607
+ D E +E +H+GI + F R NL H+K+
Sbjct: 42 KADEENEEREYLHRGIAKR------AFERSFNLADHVKV 74
Score = 28.3 bits (64), Expect = 6.2
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 188 EHKKLHQGIRYNCDLCSKEFSRKDNLTDHKKMHQGNL 224
E + LH+GI F R NL DH K+ L
Sbjct: 49 EREYLHRGIAKR------AFERSFNLADHVKVKGAEL 79
Score = 27.9 bits (63), Expect = 7.2
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 6/28 (21%)
Query: 3 LHQGIGYKCDLCSKEFSRKYNLTDHKKI 30
LH+GI + F R +NL DH K+
Sbjct: 53 LHRGIAKR------AFERSFNLADHVKV 74
>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding.
This domain family is found in archaea and eukaryotes,
and is approximately 30 amino acids in length. The
mammalian members of this group occur multiple times
along the protein, joined by flexible linkers, and are
referred to as JAZ - dsRNA-binding ZF protein -
zinc-fingers. The JAZ proteins are expressed in all
tissues tested and localise in the nucleus, particularly
the nucleolus. JAZ preferentially binds to
double-stranded (ds) RNA or RNA/DNA hybrids rather than
DNA. In addition to binding double-stranded RNA, these
zinc-fingers are required for nucleolar localisation.
Length = 27
Score = 26.0 bits (58), Expect = 8.1
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 504 RYKCDLCSKEFSSKGNLTEHM--KQHQ 528
++ C C K F S+ L H+ K+H+
Sbjct: 1 QFYCVACDKYFKSENALENHLKSKKHK 27
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.420
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 50,136,078
Number of extensions: 4771888
Number of successful extensions: 4758
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4605
Number of HSP's successfully gapped: 240
Length of query: 1042
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 935
Effective length of database: 6,191,724
Effective search space: 5789261940
Effective search space used: 5789261940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (28.6 bits)