Query psy3688
Match_columns 286
No_of_seqs 226 out of 1844
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 23:03:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3688.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3688hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 100.0 1.1E-32 2.4E-37 237.9 13.4 200 80-281 30-240 (423)
2 KOG4220|consensus 100.0 7.8E-33 1.7E-37 238.5 9.3 193 89-285 34-228 (503)
3 PHA03234 DNA packaging protein 100.0 6.6E-31 1.4E-35 232.9 18.5 192 80-281 27-228 (338)
4 PHA02834 chemokine receptor-li 100.0 1.9E-29 4.1E-34 223.0 17.7 188 86-284 29-223 (323)
5 PHA03235 DNA packaging protein 100.0 9.3E-29 2E-33 224.0 20.5 199 82-283 29-237 (409)
6 PHA02638 CC chemokine receptor 100.0 2.1E-28 4.6E-33 222.5 22.8 195 85-282 98-305 (417)
7 PHA03087 G protein-coupled che 100.0 2.1E-27 4.6E-32 211.1 18.8 188 86-282 41-235 (335)
8 PF00001 7tm_1: 7 transmembran 99.9 1.1E-26 2.4E-31 196.7 16.0 178 102-284 1-182 (257)
9 KOG2087|consensus 99.8 1.5E-19 3.3E-24 155.1 12.2 188 90-282 29-224 (363)
10 PF10320 7TM_GPCR_Srsx: Serpen 99.7 2E-16 4.4E-21 135.3 8.3 119 97-217 2-120 (257)
11 PF10328 7TM_GPCR_Srx: Serpent 99.5 5.2E-13 1.1E-17 115.4 12.7 128 95-222 3-131 (274)
12 PF10324 7TM_GPCR_Srw: Serpent 99.3 2.1E-11 4.5E-16 107.7 13.1 188 95-286 6-228 (318)
13 PF05296 TAS2R: Mammalian tast 99.3 1.1E-10 2.4E-15 102.1 16.9 199 86-286 7-216 (303)
14 PF11710 Git3: G protein-coupl 99.2 5.3E-10 1.1E-14 91.7 15.5 161 114-283 30-200 (201)
15 PF10323 7TM_GPCR_Srv: Serpent 99.1 3E-10 6.5E-15 98.6 6.4 181 96-281 5-194 (283)
16 PF05462 Dicty_CAR: Slime mold 99.0 4.8E-08 1E-12 85.0 17.8 125 90-222 11-135 (303)
17 PF10321 7TM_GPCR_Srt: Serpent 98.3 1.1E-05 2.3E-10 70.8 12.5 188 86-283 33-228 (313)
18 PF10317 7TM_GPCR_Srd: Serpent 98.3 2E-05 4.4E-10 68.7 13.9 127 90-222 3-141 (292)
19 PF03402 V1R: Vomeronasal orga 98.2 1.9E-06 4E-11 73.4 5.8 167 115-285 6-182 (265)
20 PF10316 7TM_GPCR_Srbc: Serpen 98.1 3.9E-05 8.4E-10 65.9 11.6 113 89-202 9-125 (273)
21 PF10292 7TM_GPCR_Srab: Serpen 98.1 0.00075 1.6E-08 59.8 20.1 128 88-216 19-153 (324)
22 PF00002 7tm_2: 7 transmembran 98.1 1.3E-06 2.9E-11 74.0 1.9 128 91-223 6-133 (242)
23 PF02118 Srg: Srg family chemo 98.0 6.9E-05 1.5E-09 64.7 11.8 123 94-217 6-139 (275)
24 PF10327 7TM_GPCR_Sri: Serpent 97.9 0.0005 1.1E-08 60.3 14.5 193 90-285 13-228 (303)
25 PF04789 DUF621: Protein of un 97.7 0.00095 2.1E-08 56.2 12.8 171 102-276 31-212 (305)
26 KOG4193|consensus 97.4 0.0022 4.8E-08 61.1 11.5 157 97-274 331-489 (610)
27 PF10326 7TM_GPCR_Str: Serpent 97.3 9.2E-05 2E-09 65.0 1.4 189 92-281 5-227 (307)
28 PF02117 7TM_GPCR_Sra: Serpent 97.1 0.087 1.9E-06 46.8 18.0 113 81-194 16-137 (328)
29 PF02101 Ocular_alb: Ocular al 96.6 0.17 3.7E-06 45.0 15.5 95 121-221 68-173 (405)
30 PF10318 7TM_GPCR_Srh: Serpent 96.4 0.22 4.8E-06 43.5 15.3 130 90-222 8-147 (302)
31 PF10319 7TM_GPCR_Srj: Serpent 96.2 0.21 4.7E-06 43.5 13.6 124 94-217 13-147 (310)
32 PF06681 DUF1182: Protein of u 96.1 0.091 2E-06 42.6 10.2 42 151-192 110-151 (226)
33 KOG4564|consensus 95.5 1.9 4.1E-05 40.0 17.3 113 106-222 165-289 (473)
34 PF03383 Serpentine_r_xa: Caen 95.2 0.0098 2.1E-07 46.2 1.6 61 162-222 48-108 (153)
35 PF10322 7TM_GPCR_Sru: Serpent 95.0 2.3 4.9E-05 37.4 15.8 120 154-281 99-226 (307)
36 PF02076 STE3: Pheromone A rec 95.0 1.1 2.4E-05 38.8 13.7 119 99-223 4-125 (283)
37 PF02175 7TM_GPCR_Srb: Serpent 94.1 2.9 6.4E-05 34.9 17.0 47 153-199 80-126 (236)
38 PF03125 Sre: C. elegans Sre G 93.9 4.8 0.0001 36.3 17.9 39 158-196 123-161 (365)
39 PF01534 Frizzled: Frizzled/Sm 93.0 6.3 0.00014 35.0 15.8 70 154-225 90-159 (328)
40 PF13853 7tm_4: Olfactory rece 63.7 0.77 1.7E-05 35.5 -2.7 77 204-280 5-87 (144)
41 COG1862 YajC Preprotein transl 63.0 7.9 0.00017 27.7 2.6 27 259-285 12-38 (97)
42 PF15086 UPF0542: Uncharacteri 55.3 30 0.00064 23.2 4.1 37 248-284 18-55 (74)
43 PF02699 YajC: Preprotein tran 51.1 30 0.00065 23.8 3.9 22 264-285 10-31 (82)
44 PF05241 EBP: Emopamil binding 49.8 51 0.0011 26.9 5.7 36 248-283 159-194 (194)
45 PF06305 DUF1049: Protein of u 46.5 47 0.001 21.5 4.2 35 251-285 24-58 (68)
46 PF10325 7TM_GPCR_Srz: Serpent 45.1 1.9E+02 0.0041 24.4 12.3 111 162-281 86-197 (267)
47 PF01102 Glycophorin_A: Glycop 44.4 15 0.00032 27.5 1.6 23 98-120 75-97 (122)
48 TIGR00739 yajC preprotein tran 39.5 28 0.00061 24.1 2.3 21 264-284 11-31 (84)
49 COG3771 Predicted membrane pro 34.2 88 0.0019 21.8 3.9 36 251-286 45-80 (97)
50 PF05393 Hum_adeno_E3A: Human 33.6 81 0.0018 22.0 3.7 23 263-285 44-66 (94)
51 PRK05585 yajC preprotein trans 29.5 63 0.0014 23.5 2.9 23 262-284 23-46 (106)
52 PF09882 DUF2109: Predicted me 27.3 1.4E+02 0.003 20.3 3.9 48 96-143 4-51 (78)
53 PF05545 FixQ: Cbb3-type cytoc 26.8 1.4E+02 0.003 18.1 3.7 22 262-283 15-36 (49)
54 TIGR02736 cbb3_Q_epsi cytochro 26.7 1E+02 0.0023 19.4 3.0 25 259-283 5-29 (56)
55 PF11446 DUF2897: Protein of u 26.4 74 0.0016 20.1 2.4 22 91-112 7-28 (55)
56 PF08114 PMP1_2: ATPase proteo 20.2 2E+02 0.0044 16.9 3.5 18 268-285 24-41 (43)
57 COG4736 CcoQ Cbb3-type cytochr 20.0 2.3E+02 0.005 18.3 3.7 24 261-284 14-37 (60)
No 1
>KOG4219|consensus
Probab=100.00 E-value=1.1e-32 Score=237.89 Aligned_cols=200 Identities=23% Similarity=0.415 Sum_probs=168.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhhhhheeecCcccchhHHHHHHHHHHhhHhhhhchhHHHHHHHhhccccccchhH
Q psy3688 80 ALSLLITLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCD 159 (286)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~gi~gN~lvl~~~~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~g~~~C~ 159 (286)
.+.+...+.+++++++++++++||++|++++..+|++|+.+|++++|||+||++++++..++.........|.+|..+|+
T Consensus 30 lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~C~ 109 (423)
T KOG4219|consen 30 LPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFYCR 109 (423)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccceee
Confidence 34556677789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccc------cc
Q psy3688 160 VWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAH------QL 233 (286)
Q Consensus 160 ~~~~~~~~~~~~S~~~l~~Is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~l~~~~~~~~~~~~~~~~------~~ 233 (286)
+..|+......+|++++++||+|||+||.||++.+ .++|..++.+.++|+.|+++++|..++........ ..
T Consensus 110 f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~~~ 187 (423)
T KOG4219|consen 110 FVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR--PSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESRVV 187 (423)
T ss_pred eccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC--CCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcceEE
Confidence 99999999999999999999999999999999855 68999999999999999999998886533211111 00
Q ss_pred cccc-CCCcceeecc----ceehhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3688 234 FRSH-NPNSCIFVVN----RIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQE 281 (286)
Q Consensus 234 ~~~~-~~~~c~~~~~----~~~~~~~~~~~~~iPl~vi~~~y~~I~~~l~~~~ 281 (286)
+... ....|..... +.|.....++.+++|++++..+|.+|.+++|+++
T Consensus 188 ~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~ 240 (423)
T KOG4219|consen 188 CVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRR 240 (423)
T ss_pred EEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0000 1111222222 3488888899999999999999999999998765
No 2
>KOG4220|consensus
Probab=99.98 E-value=7.8e-33 Score=238.49 Aligned_cols=193 Identities=28% Similarity=0.558 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHHHhHhhhhheeecCcccchhHHHHHHHHHHhhHhhhhchhHHHHHHHhhccccccchhHHhHHHHHHH
Q psy3688 89 ILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVYF 168 (286)
Q Consensus 89 ~~~~~~i~~~gi~gN~lvl~~~~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~g~~~C~~~~~~~~~~ 168 (286)
+++...++++.++||++|++.+..+|++++..|+|+++||+||++++++.+|....+...++|.+|..+|.++..+.++.
T Consensus 34 ~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWLalDYva 113 (503)
T KOG4220|consen 34 VVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWLALDYVA 113 (503)
T ss_pred ehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHHHHHHHHh
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCCcceee--c
Q psy3688 169 SSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIFV--V 246 (286)
Q Consensus 169 ~~~S~~~l~~Is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~--~ 246 (286)
..+|++.+..|++|||..|.+|+.|+..+|.+|+..+|++.|++|+++- +|.+..|....+... ...+.|..+ .
T Consensus 114 SNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLW-aPaIl~WqyivGkrT---v~~~eC~iQFls 189 (503)
T KOG4220|consen 114 SNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLW-APAILFWQYIVGKRT---VPDGECYIQFLS 189 (503)
T ss_pred hhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHH-HHHHHhhHhheeeee---cCCCceEEEeec
Confidence 9999999999999999999999999999999999999999999999999 455445654443322 244566543 3
Q ss_pred cceehhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy3688 247 NRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHMLF 285 (286)
Q Consensus 247 ~~~~~~~~~~~~~~iPl~vi~~~y~~I~~~l~~~~~~~~ 285 (286)
..+..+...+.-|.+|..+|+++|.||+++.+||.|+..
T Consensus 190 np~iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~ 228 (503)
T KOG4220|consen 190 NPAITFGTAIAAFYLPVTIMTILYWRIYRETRKRQKELA 228 (503)
T ss_pred CceeehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445566777888999999999999999999999988764
No 3
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.97 E-value=6.6e-31 Score=232.90 Aligned_cols=192 Identities=15% Similarity=0.156 Sum_probs=142.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhhhhhe--eecCcccchhHHHHHHHHHHhhHhhhhchhHHHHHHHhhccccccch
Q psy3688 80 ALSLLITLKILLMLFIIVSAIFGNLLVIVSV--MRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFM 157 (286)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~gi~gN~lvl~~~--~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~g~~~ 157 (286)
..+....+..+++.+++++|++||+++++++ .+++++|+++|+|++|||+||+++++ .+|+.... ..++|.+|+.+
T Consensus 27 ~~~~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l-~lp~~~~~-~~~~w~fG~~l 104 (338)
T PHA03234 27 TLKKAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHML-CVFFLTLN-REALFNFNQAF 104 (338)
T ss_pred HHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH-HHHHHHHH-HhCCccCchhH
Confidence 3445666777999999999999999999955 45566789999999999999999987 45555433 34589999999
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccc
Q psy3688 158 CDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSH 237 (286)
Q Consensus 158 C~~~~~~~~~~~~~S~~~l~~Is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~l~~~~~~~~~~~~~~~~~~~~~~ 237 (286)
||+..++..++.++|++++++||+|||+||+||.+++. ++++....+++.|+.+++.++|+.+.........
T Consensus 105 Ck~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~--~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~~~------ 176 (338)
T PHA03234 105 CQCVLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDK--KNNHIGRNIGILFLASAMCAIPAALFVKTEGKKG------ 176 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhh--hhhhHHHHHHHHHHHHHHHHhhHhHeeeeeecCC------
Confidence 99999999999999999999999999999999988643 3344455666679999999988875322111110
Q ss_pred CCCcceeec--cce---eh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3688 238 NPNSCIFVV--NRI---YC---VVSSCVSFWIPGVIMIYMYYQIYKEADRQE 281 (286)
Q Consensus 238 ~~~~c~~~~--~~~---~~---~~~~~~~~~iPl~vi~~~y~~I~~~l~~~~ 281 (286)
....|...+ +.. +. .....++|++|+++|++||.+|.+++++++
T Consensus 177 ~~~~C~~~~~~~~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~~ 228 (338)
T PHA03234 177 NYGKCNIHISSKKAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHALT 228 (338)
T ss_pred CCCcCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 111232211 111 11 122334578999999999999999997743
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.97 E-value=1.9e-29 Score=222.97 Aligned_cols=188 Identities=21% Similarity=0.442 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhheeecCcccchhHHHHHHHHHHhhHhhhhchhHHHHHHHhhccccccchhHHhHHHH
Q psy3688 86 TLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLD 165 (286)
Q Consensus 86 ~~~~~~~~~i~~~gi~gN~lvl~~~~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~g~~~C~~~~~~~ 165 (286)
.+..+++.+++++|++||+++++++.++|+ +++.|+|+.|||++|++. ...+|+.+... .++|.+|+..|++..++.
T Consensus 29 ~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~-~~~lP~~i~~~-~~~w~~g~~~C~~~~~~~ 105 (323)
T PHA02834 29 YFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLML-VFSFPFIIHND-LNEWIFGEFMCKLVLGVY 105 (323)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHH-HHHHHHHHHHH-cCCcCCcchHHHhHHHHH
Confidence 345689999999999999999999877665 457899999999999986 44788876543 457999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCCcceee
Q psy3688 166 VYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIFV 245 (286)
Q Consensus 166 ~~~~~~S~~~l~~Is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 245 (286)
..+..+|++++++||+|||++|+||++++. .+.+++...++++|+.+++.++|+.+. +...+.. ....|...
T Consensus 106 ~~~~~~Si~tL~~IsidRY~aI~~P~~~~~-~~~~~~~~~i~~iWi~s~l~~~P~~~~-~~~~~~~------~~~~C~~~ 177 (323)
T PHA02834 106 FVGFFSNMFFVTLISIDRYILVVNATKIKN-KSISLSVLLSVAAWVCSVILSMPAMVL-YYVDNTD------NLKQCIFN 177 (323)
T ss_pred HHHHHHHHHHHHHHHHHHhhheeCchhccC-CccchHHHHHHHHHHHHHHHHhhHHHH-HHhccCC------CceEEecc
Confidence 999999999999999999999999998654 356777888899999999999887653 2211111 11123210
Q ss_pred ----cc---ceehhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy3688 246 ----VN---RIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHML 284 (286)
Q Consensus 246 ----~~---~~~~~~~~~~~~~iPl~vi~~~y~~I~~~l~~~~~~~ 284 (286)
.. ..+.....++.|++|+++|++||.+|++++||++++.
T Consensus 178 ~~~~~~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~~~~ 223 (323)
T PHA02834 178 DYHENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCKNKN 223 (323)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 11 1122334577899999999999999999998876543
No 5
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.96 E-value=9.3e-29 Score=223.96 Aligned_cols=199 Identities=18% Similarity=0.156 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhheeec-Cc-ccchhHHHHHHHHHHhhHhhhhchhHHHHHHHhhccccccchhH
Q psy3688 82 SLLITLKILLMLFIIVSAIFGNLLVIVSVMRH-RK-LRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCD 159 (286)
Q Consensus 82 ~~~~~~~~~~~~~i~~~gi~gN~lvl~~~~~~-~~-~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~g~~~C~ 159 (286)
.....+..+++.+++++|++||+++++++.++ |+ .++.+++|+.|||++|++.. +.+|+.+.. ....|..|+..|+
T Consensus 29 ~~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~l-~~lP~~i~~-~~~~~~~g~~~Ck 106 (409)
T PHA03235 29 SAARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTV-FVLPFIMLS-NQGLLSGSVAGCK 106 (409)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHH-HHHHHHHHh-cCccccCCCCeeh
Confidence 34556677999999999999999999875433 32 23567899999999999874 478877632 1122334578999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCC
Q psy3688 160 VWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNP 239 (286)
Q Consensus 160 ~~~~~~~~~~~~S~~~l~~Is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~l~~~~~~~~~~~~~~~~~~~~~~~~ 239 (286)
+..++..++..+|++++++||+|||++|++|.++++ .+++++...++++|+.+++.++|+.++.+..............
T Consensus 107 ~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~-~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~~~~ 185 (409)
T PHA03235 107 FASLLYYASCTVGFATVALIAADRYRVIHQRTRARS-SAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGY 185 (409)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhccC-cccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcCCCCc
Confidence 999999999999999999999999999999986544 4688899999999999999999876543221110000000112
Q ss_pred Ccceeecc--------ceehhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3688 240 NSCIFVVN--------RIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHM 283 (286)
Q Consensus 240 ~~c~~~~~--------~~~~~~~~~~~~~iPl~vi~~~y~~I~~~l~~~~~~ 283 (286)
..|..... ..|.....++.|++|+++|++||.+|++++||++++
T Consensus 186 ~~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~~ 237 (409)
T PHA03235 186 ETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASYK 237 (409)
T ss_pred ceeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 23432111 124445566779999999999999999999887654
No 6
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.96 E-value=2.1e-28 Score=222.49 Aligned_cols=195 Identities=21% Similarity=0.443 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhheeecCcccchhHHHHHHHHHHhhHhhhhchhHHHHHHHhhccccccchhHHhHHH
Q psy3688 85 ITLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSL 164 (286)
Q Consensus 85 ~~~~~~~~~~i~~~gi~gN~lvl~~~~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~g~~~C~~~~~~ 164 (286)
.....+++.+++++|++||+++++++. +|++|+++|++++|||++|++.++ .+|+.+... .++|.+|+..|++..++
T Consensus 98 ~~~l~~~y~lvfvlgliGN~LVl~il~-~k~lrt~t~i~llnLAisDLl~~l-~lPf~i~~~-~~~W~fg~~~Ck~~~~l 174 (417)
T PHA02638 98 SEYIKIFYIIIFILGLFGNAAIIMILF-CKKIKTITDIYIFNLAISDLIFVI-DFPFIIYNE-FDQWIFGDFMCKVISAS 174 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCHhHHHHHHHHHHHHHHHH-HHHHHHHHH-hccccccccchhhHHHH
Confidence 345557889999999999999998765 478899999999999999998765 788877554 47899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccc-c--cccccccCCCc
Q psy3688 165 DVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTH-A--HQLFRSHNPNS 241 (286)
Q Consensus 165 ~~~~~~~S~~~l~~Is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~l~~~~~~~~~~~~~~-~--~~~~~~~~~~~ 241 (286)
...+.++|++.+++|++|||+||+||.++++.+++++.+..++++|+++++.++|+.+....... . ...........
T Consensus 175 ~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (417)
T PHA02638 175 YYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETISNYQ 254 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCccCCe
Confidence 99999999999999999999999999998888788888899999999999999998864221100 0 00000001123
Q ss_pred ceeec----------cceehhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3688 242 CIFVV----------NRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEH 282 (286)
Q Consensus 242 c~~~~----------~~~~~~~~~~~~~~iPl~vi~~~y~~I~~~l~~~~~ 282 (286)
|.... ...+.....++++++|+++|++||.+|+++++|.++
T Consensus 255 C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~~ 305 (417)
T PHA02638 255 CTLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLKK 305 (417)
T ss_pred eeeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 43211 112333445778899999999999999999987654
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.95 E-value=2.1e-27 Score=211.06 Aligned_cols=188 Identities=22% Similarity=0.385 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhheeecCcccchhHHHHHHHHHHhhHhhhhchhHHHHHHHhhccccccchhHHhHHHH
Q psy3688 86 TLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLD 165 (286)
Q Consensus 86 ~~~~~~~~~i~~~gi~gN~lvl~~~~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~g~~~C~~~~~~~ 165 (286)
.+..+++.+++++|++||+++++++.++ ++|++.|+++.|||++|++.++ ..|........++|..|+..|++..++.
T Consensus 41 ~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~-~~~~~~~~~~~~~~~~~~~~C~~~~~~~ 118 (335)
T PHA03087 41 TILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILFQWSFGEFACKIVSGLY 118 (335)
T ss_pred hHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHH-hHHHHHHHHhCCCCCCCcHHHHHHHHHH
Confidence 3445788889999999999999998877 8899999999999999998776 5676665666678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCCcceee
Q psy3688 166 VYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIFV 245 (286)
Q Consensus 166 ~~~~~~S~~~l~~Is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 245 (286)
..+..+|++++++||+|||++|++|.+|++..+.+++...++++|+++++.+.|+........+.. ...|...
T Consensus 119 ~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~~~~-------~~~C~~~ 191 (335)
T PHA03087 119 YIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKDHE-------TLICCMF 191 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhheeeeeccCC-------CceEEec
Confidence 999999999999999999999999999998889999999999999999999988775422221111 1223211
Q ss_pred c-------cceehhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3688 246 V-------NRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEH 282 (286)
Q Consensus 246 ~-------~~~~~~~~~~~~~~iPl~vi~~~y~~I~~~l~~~~~ 282 (286)
. ...+.+...++.+++|+++++++|.+|++++||+++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~ 235 (335)
T PHA03087 192 YNNKTMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGINK 235 (335)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1 111223345667899999999999999999988764
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.95 E-value=1.1e-26 Score=196.66 Aligned_cols=178 Identities=32% Similarity=0.648 Sum_probs=152.7
Q ss_pred HhHhhhhheeecCcccchhHHHHHHHHHHhhHhhhhchhHHHHHHHhhccccccchhHHhHHHHHHHHHHHHHHHHHHHH
Q psy3688 102 GNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVYFSSASILHLCCISV 181 (286)
Q Consensus 102 gN~lvl~~~~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~g~~~C~~~~~~~~~~~~~S~~~l~~Is~ 181 (286)
||+++++++.++|++|++.++++.|||++|++.++...|........++|..++..|++..++..++...|.++++++++
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~ 80 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISI 80 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999999888888877776889999999999999999999999999999999
Q ss_pred HHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCCcceeecc----ceehhhhhHH
Q psy3688 182 DRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIFVVN----RIYCVVSSCV 257 (286)
Q Consensus 182 dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~----~~~~~~~~~~ 257 (286)
|||++|++|.+|++..+++++...++++|+++++.+.|+.+.......... ....|..... ..+.....++
T Consensus 81 dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~-----~~~~C~~~~~~~~~~~~~~~~~~~ 155 (257)
T PF00001_consen 81 DRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDG-----SQSFCFIDFSSSSSQIYFIYFFIV 155 (257)
T ss_dssp HHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTC-----CCEEEEESCSSSHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999998764222221111 1344554332 3467788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy3688 258 SFWIPGVIMIYMYYQIYKEADRQEHML 284 (286)
Q Consensus 258 ~~~iPl~vi~~~y~~I~~~l~~~~~~~ 284 (286)
.+++|+++++++|.+|++++||++++.
T Consensus 156 ~~~~p~~~~~~~~~~i~~~~~~~~~~~ 182 (257)
T PF00001_consen 156 FFILPLIIILICYIRILRKLRRQRKRI 182 (257)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccccceeeeeeeccccccccccccccc
Confidence 999999999999999999999998864
No 9
>KOG2087|consensus
Probab=99.81 E-value=1.5e-19 Score=155.11 Aligned_cols=188 Identities=23% Similarity=0.327 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHHhHhhhhheeecCcccchhHHHHHHHHHHhhHhhhhchhHHHHHHHh-------h-ccccccchhHHh
Q psy3688 90 LLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIF-------N-RWLFGYFMCDVW 161 (286)
Q Consensus 90 ~~~~~i~~~gi~gN~lvl~~~~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~-------~-~~~~g~~~C~~~ 161 (286)
+...++.++++.||.+|+......|...++...++.|||.+|+++++....+..+.... . .|. +...|++.
T Consensus 29 i~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~-tg~gC~~a 107 (363)
T KOG2087|consen 29 ISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQ-TGLGCPVA 107 (363)
T ss_pred ehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhh-hcCCCchH
Confidence 57788899999999999999988888888999999999999999998655554433222 2 444 45699999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCCc
Q psy3688 162 NSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNS 241 (286)
Q Consensus 162 ~~~~~~~~~~S~~~l~~Is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (286)
+|+..++...|++.++.+++||++.|++|+|-++.-..|....+....|+.+++.++.|++ +...+.....+-+-+...
T Consensus 108 GflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~-g~s~Y~~~~vClPL~~~~ 186 (363)
T KOG2087|consen 108 GFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLF-GISSYGASSVCLPLHIEE 186 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhcccc-CCCCCcccceeeecccCC
Confidence 9999999999999999999999999999999777666777899999999999999999997 444444443333333333
Q ss_pred ceeeccceehhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3688 242 CIFVVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEH 282 (286)
Q Consensus 242 c~~~~~~~~~~~~~~~~~~iPl~vi~~~y~~I~~~l~~~~~ 282 (286)
+.... |....++....+.+++|+++|.+|+..++|...
T Consensus 187 ~~s~g---~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~ 224 (363)
T KOG2087|consen 187 PLSTG---YYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDL 224 (363)
T ss_pred ccchh---HHHHHHHHHHHHHHHHHHHHhhhhheeeecCCC
Confidence 22211 556666777789999999999999999887654
No 10
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.66 E-value=2e-16 Score=135.27 Aligned_cols=119 Identities=26% Similarity=0.445 Sum_probs=99.4
Q ss_pred HHHHHHhHhhhhheeecCcccchhHHHHHHHHHHhhHhhhhchhHHHHHHHhhccccccchhHHhHHHHHHHHHHHHHHH
Q psy3688 97 VSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVYFSSASILHL 176 (286)
Q Consensus 97 ~~gi~gN~lvl~~~~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~g~~~C~~~~~~~~~~~~~S~~~l 176 (286)
++|++||..++.++.++|++|+|.++++..+|++|++.+...+|...... +........|-...+...++..+....+
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~--~~~~i~~~~Cf~~~~~~~f~~~~qs~~~ 79 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLF--RDHQITRSECFWQIFFYIFFQCAQSVIM 79 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHH--hheeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999888787766333 2334456689999999999999999999
Q ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Q psy3688 177 CCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVS 217 (286)
Q Consensus 177 ~~Is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~l~~ 217 (286)
.+|++||++||+.|++|++..+.+..........+.+....
T Consensus 80 l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~~ 120 (257)
T PF10320_consen 80 LAIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFFT 120 (257)
T ss_pred HHHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHHH
Confidence 99999999999999999998888865555555555554443
No 11
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.48 E-value=5.2e-13 Score=115.45 Aligned_cols=128 Identities=18% Similarity=0.362 Sum_probs=107.7
Q ss_pred HHHHHHHHhHhhhhheeecCcccchhHHHHHHHHHHhhHhhhhchhHHHHHHHhhccccccchhH-HhHHHHHHHHHHHH
Q psy3688 95 IIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCD-VWNSLDVYFSSASI 173 (286)
Q Consensus 95 i~~~gi~gN~lvl~~~~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~g~~~C~-~~~~~~~~~~~~S~ 173 (286)
++++|++.|.++++.+.+.|++|++.+.+..+.|++|.+.++..+.+.......+.....+.... +.+.....+...+.
T Consensus 3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~~~ 82 (274)
T PF10328_consen 3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISFLPSSLNSIIFGFIGMFCYFIGP 82 (274)
T ss_pred eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999998866655555555444443443334 44778888888999
Q ss_pred HHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3688 174 LHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIF 222 (286)
Q Consensus 174 ~~l~~Is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~l~~~~~~~ 222 (286)
++-.+||++|+.||..|.+|+++.+.+.+..+++++|++++....++.+
T Consensus 83 ~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~ 131 (274)
T PF10328_consen 83 LSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYF 131 (274)
T ss_pred HHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999977766654
No 12
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=99.33 E-value=2.1e-11 Score=107.69 Aligned_cols=188 Identities=18% Similarity=0.249 Sum_probs=130.3
Q ss_pred HHHHHHHHhHhhhhheeecCcccc-hhHHHHHHHHHHhhHhhhhchhHHHHHHHhh---c------cccccchhHHhHHH
Q psy3688 95 IIVSAIFGNLLVIVSVMRHRKLRV-ITNYFVVSLAFADMLVAFGAMGFNLSVEIFN---R------WLFGYFMCDVWNSL 164 (286)
Q Consensus 95 i~~~gi~gN~lvl~~~~~~~~~~~-~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~---~------~~~g~~~C~~~~~~ 164 (286)
+.++|+++|.+-+.++ .+|.+|+ +.|.++..+|++|++..+...+......... + .........+...+
T Consensus 6 ~~~~g~~~N~~h~~VL-trk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l 84 (318)
T PF10324_consen 6 LSIFGLFINIFHLIVL-TRKSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESL 84 (318)
T ss_pred EeHHHHHHHHHHhhhc-CChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHH
Confidence 4678999999999996 4677786 8999999999999999887777666433322 1 11112234455678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCCcc
Q psy3688 165 DVYFSSASILHLCCISVDRYYAIVQPLDY--HLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSC 242 (286)
Q Consensus 165 ~~~~~~~S~~~l~~Is~dRy~aI~~P~~~--~~~~~~~~~~~~i~~~W~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~~c 242 (286)
...+...|.|..++||+.|++++.+|.+. ++..+++.+...+.++++++.+.+.+..+..... +....+. .++.|
T Consensus 85 ~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~-~~~~~~~--p~~~C 161 (318)
T PF10324_consen 85 SDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIV-EVSDPWV--PPPNC 161 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEE-ecccccc--CCCce
Confidence 88899999999999999999999999874 3456788888888889999988887766422211 1110000 01112
Q ss_pred ee------------ec-----------cceehhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy3688 243 IF------------VV-----------NRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHMLFR 286 (286)
Q Consensus 243 ~~------------~~-----------~~~~~~~~~~~~~~iPl~vi~~~y~~I~~~l~~~~~~~~r 286 (286)
.. .. .+.+.....++.-++|.++..++...+.+++||.+|++++
T Consensus 162 ~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~ 228 (318)
T PF10324_consen 162 SGFPENYTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKK 228 (318)
T ss_pred eeccccccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhc
Confidence 10 00 0122333344457899999999999999999888887753
No 13
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=99.32 E-value=1.1e-10 Score=102.06 Aligned_cols=199 Identities=13% Similarity=0.089 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhheee---cCcccchhHHHHHHHHHHhhHhhhhchhHHHHHHHhhccccccchhHHhH
Q psy3688 86 TLKILLMLFIIVSAIFGNLLVIVSVMR---HRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWN 162 (286)
Q Consensus 86 ~~~~~~~~~i~~~gi~gN~lvl~~~~~---~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~g~~~C~~~~ 162 (286)
.+..++..+.+++|++||++++.+-.. +++.-+|.|..+.+||++.++.....................+..++...
T Consensus 7 ~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (303)
T PF05296_consen 7 IIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKIID 86 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHHH
Confidence 444678888999999999998888744 44445699999999999999987755555544444444555667899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccc----ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccC
Q psy3688 163 SLDVYFSSASILHLCCISVDRYYAIVQPLD----YHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHN 238 (286)
Q Consensus 163 ~~~~~~~~~S~~~l~~Is~dRy~aI~~P~~----~~~~~~~~~~~~~i~~~W~~s~l~~~~~~~~~~~~~~~~~~~~~~~ 238 (286)
++..+....|.|..+++++--++.|+...+ +-+++=.+....++.+.++++++...+... .+......... ...
T Consensus 87 ~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~-~~~~~~~~~~~-~~~ 164 (303)
T PF05296_consen 87 FLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLSIPL-FIDNHINNNNT-NNS 164 (303)
T ss_pred HHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-heeeeeccccc-cCC
Confidence 999999999999999999999999987543 112222222334456666666632222221 12111111101 111
Q ss_pred CCcce-e---eccceehhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy3688 239 PNSCI-F---VVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHMLFR 286 (286)
Q Consensus 239 ~~~c~-~---~~~~~~~~~~~~~~~~iPl~vi~~~y~~I~~~l~~~~~~~~r 286 (286)
.+... . .....+......++.++|+.+++.+...+...++||.||+++
T Consensus 165 ~N~t~~~~~~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~ 216 (303)
T PF05296_consen 165 RNSTSNFQESKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQK 216 (303)
T ss_pred CcceEEeecchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 11111 1 111223333445788999999999999999999999999874
No 14
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=99.23 E-value=5.3e-10 Score=91.74 Aligned_cols=161 Identities=14% Similarity=0.125 Sum_probs=107.9
Q ss_pred CcccchhHHHHHHHHHHhhHhhhhchhHHHHHHHhhccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy3688 114 RKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDY 193 (286)
Q Consensus 114 ~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~g~~~C~~~~~~~~~~~~~S~~~l~~Is~dRy~aI~~P~~~ 193 (286)
+++|.-.+.++.||.++|++.++..+.....+...++-..++..|...+++..++..++-+...+||++-|+.|.+|-..
T Consensus 30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~~~~ 109 (201)
T PF11710_consen 30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRPNWK 109 (201)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 44466667799999999999998776656656665555556789999999999999999999999999999999999221
Q ss_pred cc---------cchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCCcceeecc-ceehhhhhHHHHHHHH
Q psy3688 194 HL---------IMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIFVVN-RIYCVVSSCVSFWIPG 263 (286)
Q Consensus 194 ~~---------~~~~~~~~~~i~~~W~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~-~~~~~~~~~~~~~iPl 263 (286)
++ ...+........+.|++...++.. + .....+. ....+|....+ ..+.....-+.-++-.
T Consensus 110 ~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la~i----~----~~~~~Y~-~~g~WCWi~~~~~~~Rl~l~y~~~~~~~ 180 (201)
T PF11710_consen 110 RKRSKNVEGGLYPYRYWVWVIWILVPLLLASLAFI----G----LGGPGYG-PAGAWCWIPSRYEWYRLWLHYIWRFIII 180 (201)
T ss_pred cccccccccceEEeeeeeehHHHHHHHHHHHHHHh----c----cccCccc-ccCcEEEECCCcHHHHHHHHHHHHHHHH
Confidence 10 011122223333445444433321 1 1111111 24677875433 3344444444455667
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy3688 264 VIMIYMYYQIYKEADRQEHM 283 (286)
Q Consensus 264 ~vi~~~y~~I~~~l~~~~~~ 283 (286)
+.+++.|..|+..+||+.|+
T Consensus 181 ~~~i~iY~~if~~lrr~~~~ 200 (201)
T PF11710_consen 181 FAIIIIYIAIFFYLRRRIRR 200 (201)
T ss_pred HHHHHHHHHHHHHHhhhhcc
Confidence 88899999999999999886
No 15
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.05 E-value=3e-10 Score=98.55 Aligned_cols=181 Identities=14% Similarity=0.191 Sum_probs=117.7
Q ss_pred HHHHHHHhHhhhhheeecCc----ccchhHHHHHHHHHHhhHhhhhchhHHHHHHHh---h-ccccccchhHHhHHHHHH
Q psy3688 96 IVSAIFGNLLVIVSVMRHRK----LRVITNYFVVSLAFADMLVAFGAMGFNLSVEIF---N-RWLFGYFMCDVWNSLDVY 167 (286)
Q Consensus 96 ~~~gi~gN~lvl~~~~~~~~----~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~---~-~~~~g~~~C~~~~~~~~~ 167 (286)
+++.++-..++++++.+.|+ .+++.+-++.+-+++|++..+............ + ....++..-++.....+.
T Consensus 5 ~~~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~ 84 (283)
T PF10323_consen 5 SIVTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYY 84 (283)
T ss_pred EeehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHH
Confidence 34556666777776666544 458999999999999999876544433322221 0 112233345566666777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc-cccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCCcceeec
Q psy3688 168 FSSASILHLCCISVDRYYAIVQPL-DYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIFVV 246 (286)
Q Consensus 168 ~~~~S~~~l~~Is~dRy~aI~~P~-~~~~~~~~~~~~~~i~~~W~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 246 (286)
....-....+.+|++||.||++|. ++++..++.+...++++-|+.+.+.++|.+.......+..+. ....- +..
T Consensus 85 ~~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~~f~~~~~----~~~~~-d~~ 159 (283)
T PF10323_consen 85 FLYIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDFYFDNEEN----MSLFV-DPE 159 (283)
T ss_pred HHHHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeeeeccCceeeecccc----eeeec-CHH
Confidence 778888999999999999999999 788888999999999999999999997644321111111111 00000 001
Q ss_pred cceehhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3688 247 NRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQE 281 (286)
Q Consensus 247 ~~~~~~~~~~~~~~iPl~vi~~~y~~I~~~l~~~~ 281 (286)
..............+-++..+++|..++..+||+.
T Consensus 160 ~~~~~~~~~~~~~~~~cv~~iv~Y~~i~~~iRk~~ 194 (283)
T PF10323_consen 160 FIQRNFLIAFIFVSVTCVICIVCYGIIFIFIRKRN 194 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11123333344455667788899999999998553
No 16
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=98.99 E-value=4.8e-08 Score=85.01 Aligned_cols=125 Identities=22% Similarity=0.355 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHhHhhhhheeecCcccchhHHHHHHHHHHhhHhhhhchhHHHHHHHhhccccccchhHHhHHHHHHHH
Q psy3688 90 LLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVYFS 169 (286)
Q Consensus 90 ~~~~~i~~~gi~gN~lvl~~~~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~g~~~C~~~~~~~~~~~ 169 (286)
.+..+..+++++|-++++..+++.|++|++.+-++.-++++|++..+..+... ...+-..++..|.+++++..++.
T Consensus 11 ~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~----~~~~~~~~s~lC~~Qafliq~f~ 86 (303)
T PF05462_consen 11 AIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMT----LSPSAGENSFLCQFQAFLIQFFM 86 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH----hcccCCCCCcchhhHhHHHHHhh
Confidence 56667788899999999999999999999999999999999999765433221 11233345778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3688 170 SASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIF 222 (286)
Q Consensus 170 ~~S~~~l~~Is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~l~~~~~~~ 222 (286)
.++.+-.++||++=|+.+++... . .+|.-+....++|.++++.++.++.
T Consensus 87 ~as~lWt~~iA~nly~~~~~~~~--~--~~k~e~~Y~l~~wGiPli~a~i~l~ 135 (303)
T PF05462_consen 87 LASFLWTLCIAFNLYLTFVKRYD--E--LEKLEKYYHLVCWGIPLIPAVIPLI 135 (303)
T ss_pred HHHHHHHHHHHHHhhheeEEcCc--c--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987532 2 3455567788899999998887764
No 17
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=98.32 E-value=1.1e-05 Score=70.82 Aligned_cols=188 Identities=12% Similarity=0.154 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhheeecCcccchhHHHHHHHHHHhhHhhhhchhHHHHHHHhhccccccchhHH-----
Q psy3688 86 TLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDV----- 160 (286)
Q Consensus 86 ~~~~~~~~~i~~~gi~gN~lvl~~~~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~g~~~C~~----- 160 (286)
.+.++.+.+.+++-.+.....++++.+++..|.+.+-++.-|++.|++.....-......... |...|..
T Consensus 33 p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i~-----G~vfC~~P~~~~ 107 (313)
T PF10321_consen 33 PILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILAIF-----GAVFCSYPRFIY 107 (313)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHhc-----CccccCCchHhh
Confidence 445577777777788889999999888887788999999999999999876433333323232 3334443
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHH--HHHHHHHHHHHHHHHhhhcccccccccccc
Q psy3688 161 -WNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLC--IVWLSPALVSFLPIFLGWYTTHAHQLFRSH 237 (286)
Q Consensus 161 -~~~~~~~~~~~S~~~l~~Is~dRy~aI~~P~~~~~~~~~~~~~~~i~--~~W~~s~l~~~~~~~~~~~~~~~~~~~~~~ 237 (286)
.+.+...+-..+......++++|..-+..|...+..+..++....+. +++.+-..+-.+|..+.... ..+-.
T Consensus 108 i~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l~~~~iY~~y~~~fT~pv~Fns~~----~sw~f- 182 (313)
T PF10321_consen 108 IMGCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIVLFLPIIYGFYFSFFTPPVLFNSEY----MSWFF- 182 (313)
T ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEeeehhHHHHHHHHHHHcCcccCCCCc----ceEec-
Confidence 33444555667788888999999999999987666666666544333 33333222223555432100 00000
Q ss_pred CCCcceeeccceehhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3688 238 NPNSCIFVVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHM 283 (286)
Q Consensus 238 ~~~~c~~~~~~~~~~~~~~~~~~iPl~vi~~~y~~I~~~l~~~~~~ 283 (286)
++..-+....+.|.-....+..++-.+.+..+|.-+...++|+.|+
T Consensus 183 DP~i~~g~~~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~ 228 (313)
T PF10321_consen 183 DPMIFEGKSPELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKY 228 (313)
T ss_pred CccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0000000111223222222223344566777888887777766443
No 18
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=98.30 E-value=2e-05 Score=68.74 Aligned_cols=127 Identities=16% Similarity=0.239 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHhHhhhhheeecCc-ccchhHHHHHHHHHHhhHhhhhchhHHHHHHHhhc-----------cccccch
Q psy3688 90 LLMLFIIVSAIFGNLLVIVSVMRHRK-LRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNR-----------WLFGYFM 157 (286)
Q Consensus 90 ~~~~~i~~~gi~gN~lvl~~~~~~~~-~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~-----------~~~g~~~ 157 (286)
+++.+.+.+|++.|.++++.+.++.. .-+...+++.|-|+.|++.++....... .....+ ..+|+..
T Consensus 3 i~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q~-R~i~~~~~~~~~~~GpC~~~~~~~ 81 (292)
T PF10317_consen 3 IYHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQP-RIIPNGTSIAVISYGPCRYFGPWF 81 (292)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccCCCCcEEEEeeecceecCcHH
Confidence 35677889999999999988866543 3346788999999999998764333222 222221 1246778
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3688 158 CDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIF 222 (286)
Q Consensus 158 C~~~~~~~~~~~~~S~~~l~~Is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~l~~~~~~~ 222 (286)
|.....+...+...+.+++..--.-||..+.++.. ++++....+.+.+..++.......+
T Consensus 82 C~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~-----~~~~~i~~~~l~~~p~~~~~i~~~~ 141 (292)
T PF10317_consen 82 CFFCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP-----SRKRIIFICILIYIPSFSMLIFFFF 141 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888888889999999888999999998743 5667777777888777777654443
No 19
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=98.24 E-value=1.9e-06 Score=73.37 Aligned_cols=167 Identities=14% Similarity=0.096 Sum_probs=106.7
Q ss_pred cccchhHHHHHHHHHHhhHhhhhc-hhHHHHHHHhhccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccc
Q psy3688 115 KLRVITNYFVVSLAFADMLVAFGA-MGFNLSVEIFNRWLFGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIV-QPLD 192 (286)
Q Consensus 115 ~~~~~~~~ll~~LaiaDll~~~~~-~p~~~~~~~~~~~~~g~~~C~~~~~~~~~~~~~S~~~l~~Is~dRy~aI~-~P~~ 192 (286)
+..+|.|..+.+||+++.++.+.- +|. . ....+...+++..||+..++.-++-..|+.+.+++|+ |.||+ .|..
T Consensus 6 ~r~kp~dlIl~hLa~aN~lvLl~rGip~-~-~~~~~~~~~~d~gCK~v~Y~~RV~RglSictTCLLSv--fQAItISP~~ 81 (265)
T PF03402_consen 6 HRLKPIDLILIHLALANILVLLSRGIPQ-T-MAFFGWKFFDDIGCKIVFYIYRVARGLSICTTCLLSV--FQAITISPSN 81 (265)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhhHHH-H-HHHhhcccCCCceeeeeeeehHHhchhhHHhhhHHHH--HhhEEEecCC
Confidence 345689999999999999987753 443 2 2223333468999999999999999999999999999 66766 3432
Q ss_pred c----cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCCcceeeccc----eehhhhhHHHHHHHHH
Q psy3688 193 Y----HLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIFVVNR----IYCVVSSCVSFWIPGV 264 (286)
Q Consensus 193 ~----~~~~~~~~~~~~i~~~W~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~----~~~~~~~~~~~~iPl~ 264 (286)
. -+.+.++.....+...|++-.++...-.+......+............|...... ........+.=++.+.
T Consensus 82 s~w~~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~~~~~~~~~~~~~~~~~~D~~fvg 161 (265)
T PF03402_consen 82 SRWAELKVKAPKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSVPISYIVSSLFATLLSFRDVLFVG 161 (265)
T ss_pred chhhhhhhhcCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEEecchhhhhhhhhHHHhhHHHHHH
Confidence 1 1223555667778888998888774322211111111111111233566532211 1112222333456778
Q ss_pred HHHHHHHHHHHHHHHhhhhhc
Q psy3688 265 IMIYMYYQIYKEADRQEHMLF 285 (286)
Q Consensus 265 vi~~~y~~I~~~l~~~~~~~~ 285 (286)
+|+..-+-+...+.||+||++
T Consensus 162 LM~~aSgyMV~~L~RH~q~Vq 182 (265)
T PF03402_consen 162 LMIWASGYMVFLLYRHHQQVQ 182 (265)
T ss_pred HHHhhhhhheeeeeecccccc
Confidence 899999999999999998865
No 20
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=98.13 E-value=3.9e-05 Score=65.90 Aligned_cols=113 Identities=13% Similarity=0.131 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHhHhhhhheeecCcccchhHHHHHHHHHHhhHhhhhchhHHHHHHHhhcccccc----chhHHhHHH
Q psy3688 89 ILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGY----FMCDVWNSL 164 (286)
Q Consensus 89 ~~~~~~i~~~gi~gN~lvl~~~~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~g~----~~C~~~~~~ 164 (286)
.++-.+...+....|..+++.+...|+.+++.-.++--..+.|.+.++...+........ .|.... ..=-..+..
T Consensus 9 ~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~if~~~~p 87 (273)
T PF10316_consen 9 SIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILF-SLFPEFLDYKNLIFYIGWP 87 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHH-HhChhhhccccEEeehhhh
Confidence 356666778888999999998887777445555666678999999998766655443332 111111 111111223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHH
Q psy3688 165 DVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRL 202 (286)
Q Consensus 165 ~~~~~~~S~~~l~~Is~dRy~aI~~P~~~~~~~~~~~~ 202 (286)
..............||+||-.|+..|..|++.+.+-..
T Consensus 88 ~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~k~~~ 125 (273)
T PF10316_consen 88 SSNLGSIRSILALIIALDRVFAVYFPIFYHNYRKKIPN 125 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCccccH
Confidence 33445667788899999999999999998876544433
No 21
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=98.12 E-value=0.00075 Score=59.82 Aligned_cols=128 Identities=10% Similarity=0.100 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHhHhhhhheeecCcccchhHHHHHHHHHHhhHhhhhchhHHH---HHHHhh----ccccccchhHH
Q psy3688 88 KILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNL---SVEIFN----RWLFGYFMCDV 160 (286)
Q Consensus 88 ~~~~~~~i~~~gi~gN~lvl~~~~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~---~~~~~~----~~~~g~~~C~~ 160 (286)
...+..+++++|++.++..++...+++..|.=..+++....++.++.++....... ..+... +......-|-+
T Consensus 19 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C~~ 98 (324)
T PF10292_consen 19 SLIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRCFI 98 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHHHH
Confidence 34567788888999988888887777777777778888888888888764333332 222211 22345668988
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Q psy3688 161 WNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALV 216 (286)
Q Consensus 161 ~~~~~~~~~~~S~~~l~~Is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~l~ 216 (286)
......++...+..+.+++++||++|-++..+|.+. ++.-...+..+.|+++...
T Consensus 99 lR~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~-~~~~Gi~l~~~qi~is~~~ 153 (324)
T PF10292_consen 99 LRIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKS-GKWLGILLAFFQILISLLI 153 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCC-CccHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999888864 3333234444445554443
No 22
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=98.09 E-value=1.3e-06 Score=73.96 Aligned_cols=128 Identities=20% Similarity=0.217 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHhHhhhhheeecCcccchhHHHHHHHHHHhhHhhhhchhHHHHHHHhhccccccchhHHhHHHHHHHHH
Q psy3688 91 LMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVYFSS 170 (286)
Q Consensus 91 ~~~~i~~~gi~gN~lvl~~~~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~g~~~C~~~~~~~~~~~~ 170 (286)
+..+-+.+++++-.+.+......|++|+..+....||++++++..+..+.... ....+.....+..|+..+.+.+.+..
T Consensus 6 i~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~~~-~~~~~~~~~~~~~C~~~a~~~hy~~l 84 (242)
T PF00002_consen 6 ISYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIGIS-QTFSPISTTNHCLCRAIAILLHYFFL 84 (242)
T ss_dssp HHHHHHH-------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHheehh-hccccccccccccchhhhhHhHHHHH
Confidence 33344445556655566665666788887788899999999987664433211 11111111112259999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy3688 171 ASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFL 223 (286)
Q Consensus 171 ~S~~~l~~Is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~l~~~~~~~~ 223 (286)
++...+.+.+++-|..++++.. ..+++........|.++++........
T Consensus 85 a~f~Wm~~~~~~l~~~~~~~~~----~~~~~~~~~~~~gwg~P~~iv~i~~~~ 133 (242)
T PF00002_consen 85 ASFFWMLVEAFYLYRLLVKVFN----SSRRRFWWYYLIGWGIPALIVVISVAV 133 (242)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHHHHhheeEEEeec----ccchhhheeeeeeecCcceeeeeeeee
Confidence 9999999999999999988733 134556677788999988888765543
No 23
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=98.05 E-value=6.9e-05 Score=64.67 Aligned_cols=123 Identities=14% Similarity=0.260 Sum_probs=80.7
Q ss_pred HHHHHHHHHhHhhhhheeecCc--c-cchhHHHHHHHHHHhhHhhhhchhH-HHHHH-------HhhccccccchhHHhH
Q psy3688 94 FIIVSAIFGNLLVIVSVMRHRK--L-RVITNYFVVSLAFADMLVAFGAMGF-NLSVE-------IFNRWLFGYFMCDVWN 162 (286)
Q Consensus 94 ~i~~~gi~gN~lvl~~~~~~~~--~-~~~~~~ll~~LaiaDll~~~~~~p~-~~~~~-------~~~~~~~g~~~C~~~~ 162 (286)
+-++.+++.+.++++++.++|+ . +++.+.+..--++.|++.-+...+. .+... ........+...++..
T Consensus 6 ~Ygi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (275)
T PF02118_consen 6 IYGIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIFY 85 (275)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHHH
Confidence 3456677788888888877776 4 6677777777777777654422221 11111 0000112345677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Q psy3688 163 SLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVS 217 (286)
Q Consensus 163 ~~~~~~~~~S~~~l~~Is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~l~~ 217 (286)
++......+-..+...|+++|+-++..|.++.+..++.. ...++++.+..+...
T Consensus 86 ~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~-~~~i~~i~~~p~~~~ 139 (275)
T PF02118_consen 86 FLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRYY-WIIIIIIFLLPFSFT 139 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhhh-hhheeeeeehhHHHH
Confidence 888889999999999999999999999999888766443 344445555554443
No 24
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=97.90 E-value=0.0005 Score=60.29 Aligned_cols=193 Identities=16% Similarity=0.196 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHhHhhhhheeec-CcccchhHHHH---HHHHHHhhHhhhhchhHHHHHHHhhccccccchhHH-----
Q psy3688 90 LLMLFIIVSAIFGNLLVIVSVMRH-RKLRVITNYFV---VSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDV----- 160 (286)
Q Consensus 90 ~~~~~i~~~gi~gN~lvl~~~~~~-~~~~~~~~~ll---~~LaiaDll~~~~~~p~~~~~~~~~~~~~g~~~C~~----- 160 (286)
..+-++++++++.|.+.++.+..+ +|+.+-.++++ ....+.|+-.+....|..+.....| +-.| .+|+.
T Consensus 13 ~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~ag-y~~G-~l~~~f~i~~ 90 (303)
T PF10327_consen 13 NYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAG-YCVG-FLARYFGISS 90 (303)
T ss_pred HHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeEE-EEEe-ehhhcCCCch
Confidence 577788999999999999887654 44444333322 3456799999888888777654443 2222 23333
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccC
Q psy3688 161 --WNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHN 238 (286)
Q Consensus 161 --~~~~~~~~~~~S~~~l~~Is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~l~~~~~~~~~~~~~~~~~~~~~~~ 238 (286)
...+..+....-+-.++.--+-|+.+|.+..+.++ .++..-........+........-...+..+.+..+...+..
T Consensus 91 h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~~-l~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~eeq~~yI~~ny 169 (303)
T PF10327_consen 91 HYLMTIWIFLFIFQIESLVICFLRKHQAIARILSKHV-LPKWFYIFFYFFCILFPFFIFICFYFSGMSREEQMEYIRENY 169 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-CcHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC
Confidence 33344444555555666667899999999876444 233333344444444444444322221211111111222222
Q ss_pred CCcce----------eecccee--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy3688 239 PNSCI----------FVVNRIY--CVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHMLF 285 (286)
Q Consensus 239 ~~~c~----------~~~~~~~--~~~~~~~~~~iPl~vi~~~y~~I~~~l~~~~~~~~ 285 (286)
++... .+.+.++ .....+++..+-..+..+++..+++.+++.+++++
T Consensus 170 P~~~~~F~~l~nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~iS 228 (303)
T PF10327_consen 170 PEYLSWFSSLPNFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKIS 228 (303)
T ss_pred CchhHHHhcCCCEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 22111 0111111 23344444556677788889999999988887764
No 25
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=97.74 E-value=0.00095 Score=56.25 Aligned_cols=171 Identities=13% Similarity=0.183 Sum_probs=106.0
Q ss_pred HhHhhhhheeecCcccchhHHHHHHHHHHhhHhhhhc----hhHHHHHHHhhccccccchhHHhHHHHHHHHHHHHHHHH
Q psy3688 102 GNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGA----MGFNLSVEIFNRWLFGYFMCDVWNSLDVYFSSASILHLC 177 (286)
Q Consensus 102 gN~lvl~~~~~~~~~~~~~~~ll~~LaiaDll~~~~~----~p~~~~~~~~~~~~~g~~~C~~~~~~~~~~~~~S~~~l~ 177 (286)
|-.+++.++...+=++.+.-.++..|.++-++..... .|..+......+.. .+..-.+..+...++.++-.++=.
T Consensus 31 ~~Flv~~i~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~~-~s~~f~~~Sy~idf~h~siLfsNl 109 (305)
T PF04789_consen 31 GAFLVLSIILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEFV-QSELFIFMSYLIDFCHYSILFSNL 109 (305)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHHh-ccchhhHHHHHHHHHHHHHHHHHH
Confidence 4445555544444334567889999999888775543 44444333333322 334566778888899999999999
Q ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCCccee-------ecccee
Q psy3688 178 CISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIF-------VVNRIY 250 (286)
Q Consensus 178 ~Is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~~c~~-------~~~~~~ 250 (286)
.||++|.....+--...+.+.+.-..+....+|++++.......- ....++.+. ........|.. ......
T Consensus 110 viaIqR~fVFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~-~nC~Y~y~~-~~~~y~L~C~~~~~~v~~~~P~~I 187 (305)
T PF04789_consen 110 VIAIQRFFVFFFRNLTDKVFESPVIYIWLLLVWILSIGVVYSLMS-NNCRYRYNK-WSKHYQLNCETCNSVVDISPPRGI 187 (305)
T ss_pred HHHHhhheeeeehhhhhhhccchHHHHHHHHHHHHHHHHHHHHHh-CCCeeeccc-ccccEEEEcCCCCeeEeeCCCCch
Confidence 999999887775433445667788899999999999887743332 111111111 11222233432 223445
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3688 251 CVVSSCVSFWIPGVIMIYMYYQIYKE 276 (286)
Q Consensus 251 ~~~~~~~~~~iPl~vi~~~y~~I~~~ 276 (286)
.....++.+.+|++ |...|..+..+
T Consensus 188 qiiE~ilQ~~IPi~-Il~iYiAIIiK 212 (305)
T PF04789_consen 188 QIIEIILQFGIPIF-ILVIYIAIIIK 212 (305)
T ss_pred hHHHHHHHHhHHHH-HHHHHHHHHHH
Confidence 66888899999966 55566666533
No 26
>KOG4193|consensus
Probab=97.37 E-value=0.0022 Score=61.10 Aligned_cols=157 Identities=17% Similarity=0.205 Sum_probs=94.4
Q ss_pred HHHHHHhHhhhhheeecCcccchhHHHHHHHHHHhhHhhhhchhHHHHHHHhhccccc-cc-hhHHhHHHHHHHHHHHHH
Q psy3688 97 VSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFG-YF-MCDVWNSLDVYFSSASIL 174 (286)
Q Consensus 97 ~~gi~gN~lvl~~~~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~g-~~-~C~~~~~~~~~~~~~S~~ 174 (286)
.+++++=++.+++..-.|++++..+....||+++=++.-+ ..+.+.|..+ .. .|++.+++.+++..+...
T Consensus 331 ~iSlvcL~lti~ty~~~~~l~~~~~~i~~~l~~~L~l~~l--------~fL~~~~~~~~~~~~C~~~a~llhff~LaaF~ 402 (610)
T KOG4193|consen 331 IISLVCLLLTIATYLLFRKLQNDRTKIHINLCLCLFLAEL--------LFLLGIDRTSTSVVLCIAAAILLHFFFLAAFF 402 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH--------HHhcccccccCcccccHHHHHHHHHHHHHHHH
Confidence 3344444444444444556665557777888887222111 2222333332 22 799999999999999999
Q ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCCcceeeccceehhhh
Q psy3688 175 HLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIFVVNRIYCVVS 254 (286)
Q Consensus 175 ~l~~Is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 254 (286)
.+..+++.=|+.++.-.+ ...+++........|...+++.......... .+. .+. .+..|+...+....+.
T Consensus 403 Wm~leg~hl~~~~v~vf~---~~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~-~~~-~~~---~~~~CWl~~~~~~~~~- 473 (610)
T KOG4193|consen 403 WMLLEGFHLYLLLVEVFR---SRPRRRKLLYSLYGWGVPAVVVGVSALVDPD-LEG-QYG---TPRVCWLDTQNGFIWS- 473 (610)
T ss_pred HHHHHHHHHHHHHHHHhc---cccchHHHHHHHHHhhhhHHHHhheeEEecc-Ccc-ccc---cCCceEEecCCceEEE-
Confidence 999999999997766443 2245555555568999888877655542211 111 111 2334876555544433
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy3688 255 SCVSFWIPGVIMIYMYYQIY 274 (286)
Q Consensus 255 ~~~~~~iPl~vi~~~y~~I~ 274 (286)
|+.|+.+++.+++.++
T Consensus 474 ----F~GPv~~ii~~Ni~~F 489 (610)
T KOG4193|consen 474 ----FLGPVTLIILVNIVMF 489 (610)
T ss_pred ----EehHHHHHHHHHHHHH
Confidence 6677777777775554
No 27
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=97.30 E-value=9.2e-05 Score=65.02 Aligned_cols=189 Identities=14% Similarity=0.187 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhHhhhhheeecCcc-cchhHHHHHHHHHHhhHhhhhchhHHHHHHHh----------hccccccchhHH
Q psy3688 92 MLFIIVSAIFGNLLVIVSVMRHRKL-RVITNYFVVSLAFADMLVAFGAMGFNLSVEIF----------NRWLFGYFMCDV 160 (286)
Q Consensus 92 ~~~i~~~gi~gN~lvl~~~~~~~~~-~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~----------~~~~~g~~~C~~ 160 (286)
--+.++++++.|.+.++.+.++.+. -..-.+++...|+.|++.++.-....-..... +.+..+....++
T Consensus 5 ~~~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (307)
T PF10326_consen 5 QYIGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQI 84 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheee
Confidence 3455778999999999887654332 23455677788888888776443322211111 122233444555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccc---
Q psy3688 161 WNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSH--- 237 (286)
Q Consensus 161 ~~~~~~~~~~~S~~~l~~Is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~l~~~~~~~~~~~~~~~~~~~~~~--- 237 (286)
...+...+...+...++.-=+.||.++++|.+.+. .+.++...+....-+.++.+...-.+......+.++..++.
T Consensus 85 l~~~y~~~f~~~~~llaihFiYRY~av~~~~~l~~-f~~~~~~~w~~~~~~~~~~W~~~~~~~~~~~~~~~~~lr~~~~~ 163 (307)
T PF10326_consen 85 LLAIYCGCFGMSFSLLAIHFIYRYWAVCRPKKLRY-FSGWRFIIWFLIPIIFGIIWFLLVYFFFSPDEESDEYLREELLE 163 (307)
T ss_pred hhhhhhhhHHHHHHHHHhHhhhheeeeccchhhcc-ccccceeeeehhhhhhcccceEEEeehhccchhhhhhhcccccc
Confidence 55566666667777777777899999999986533 33344333322222222222221111111111100000000
Q ss_pred --------------------CCCcceeeccceehhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3688 238 --------------------NPNSCIFVVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQE 281 (286)
Q Consensus 238 --------------------~~~~c~~~~~~~~~~~~~~~~~~iPl~vi~~~y~~I~~~l~~~~ 281 (286)
..+.....+..............+.+.++++|-.++++++++..
T Consensus 164 ~y~~~i~~~~y~~~~~y~~~~nG~~~~~~~~~~~~~~~~~im~~s~~iii~cg~~~~~~i~~~~ 227 (307)
T PF10326_consen 164 NYGLDIDEIPYVGFVYYPKDENGSKELNWPSFIGMLIMCIIMSISFFIIIYCGIKIYKKIKKLS 227 (307)
T ss_pred ccCCCccceeEEEEEEeeeccCCceeechhhheeeeecchhHHhHHHHHHHHHhhhHHHHhccc
Confidence 00001112222333444455567889999999999999985543
No 28
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=97.08 E-value=0.087 Score=46.78 Aligned_cols=113 Identities=17% Similarity=0.240 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhheeecCcccc-hhHHHHHHHHHHhhHhhhhchhHHH---HHHHh--h---cc
Q psy3688 81 LSLLITLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRV-ITNYFVVSLAFADMLVAFGAMGFNL---SVEIF--N---RW 151 (286)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~gi~gN~lvl~~~~~~~~~~~-~~~~ll~~LaiaDll~~~~~~p~~~---~~~~~--~---~~ 151 (286)
.+....+..++..++.+++.++....+..++++.-..+ ...+++.+|..+++=-.. .....+ +.... + ..
T Consensus 16 tS~~~~~~~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~~-y~~~~~~~lyrsf~~~~dpC~i 94 (328)
T PF02117_consen 16 TSWNFRINQIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQIS-YAIIQIWSLYRSFFYSDDPCSI 94 (328)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCeee
Confidence 34444555677778888888888888888766555554 556677777777765433 222221 11111 1 33
Q ss_pred ccccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy3688 152 LFGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYH 194 (286)
Q Consensus 152 ~~g~~~C~~~~~~~~~~~~~S~~~l~~Is~dRy~aI~~P~~~~ 194 (286)
.+.+..|.....+..++....++.-+++.+||-+|-..|..+.
T Consensus 95 ~f~~~eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~~ 137 (328)
T PF02117_consen 95 LFTSSECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYYS 137 (328)
T ss_pred EeecCceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Confidence 4556789988889999999999999999999999999886543
No 29
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=96.61 E-value=0.17 Score=44.98 Aligned_cols=95 Identities=22% Similarity=0.297 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhhHhhhhchhHHHHHHHhhccc-----------cccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3688 121 NYFVVSLAFADMLVAFGAMGFNLSVEIFNRWL-----------FGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQ 189 (286)
Q Consensus 121 ~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~-----------~g~~~C~~~~~~~~~~~~~S~~~l~~Is~dRy~aI~~ 189 (286)
.-.+..||++|++.++..+.-...+....... .....|.....-..++..++.+-+.+-|+|=|+.+.+
T Consensus 68 ~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~ 147 (405)
T PF02101_consen 68 RRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRR 147 (405)
T ss_pred chhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeec
Confidence 45789999999999887766666554443111 1346898888777788999999999999999998865
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy3688 190 PLDYHLIMTKSRLLIMLCIVWLSPALVSFLPI 221 (286)
Q Consensus 190 P~~~~~~~~~~~~~~~i~~~W~~s~l~~~~~~ 221 (286)
-- .+.+....-.++|..+.+++.--.
T Consensus 148 ~a------g~~~~~lYH~~aWgl~~lL~~~Gl 173 (405)
T PF02101_consen 148 SA------GRSTIWLYHMMAWGLPALLCAEGL 173 (405)
T ss_pred cC------CCcchhHHHHHHHHHHHHHHHhcc
Confidence 32 122335667779999988886443
No 30
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=96.39 E-value=0.22 Score=43.46 Aligned_cols=130 Identities=8% Similarity=0.106 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHhHhhhhheeecCc--ccchhHHHHHH----HHHHhhHhhhhchhHHHHHHHhhc----cccccchhH
Q psy3688 90 LLMLFIIVSAIFGNLLVIVSVMRHRK--LRVITNYFVVS----LAFADMLVAFGAMGFNLSVEIFNR----WLFGYFMCD 159 (286)
Q Consensus 90 ~~~~~i~~~gi~gN~lvl~~~~~~~~--~~~~~~~ll~~----LaiaDll~~~~~~p~~~~~~~~~~----~~~g~~~C~ 159 (286)
...=.+.+++++-|.+..+++.++.. +++ ....+++ ..+.|+..+....|........+. ...-..-..
T Consensus 8 ~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~-~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~gv~~~ 86 (302)
T PF10318_consen 8 IVLHIITIISIPIYIFGFYCILFKTPKSMKS-VKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGILSYFGVPTP 86 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHheeEeChhhhHH-HHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcchhhcccChH
Confidence 45556678899999999998876533 333 2233333 345788888888776554433331 111134566
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3688 160 VWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIF 222 (286)
Q Consensus 160 ~~~~~~~~~~~~S~~~l~~Is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~l~~~~~~~ 222 (286)
+..++..........++..+=-+||.++....+ +. ..++......++.++.+.+...|..+
T Consensus 87 ~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~-~~-~~~~~r~~~~~~~y~~~~~~~~~~~~ 147 (302)
T PF10318_consen 87 IQFYIGVTLLAFVGVSILSLFENRYQIIIRNRS-RS-LWKKIRIIFIIFNYIIAFLFFIPIYL 147 (302)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccc-cc-cchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 677777777888888888889999999997644 11 12222344455556666666655554
No 31
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=96.19 E-value=0.21 Score=43.47 Aligned_cols=124 Identities=14% Similarity=0.070 Sum_probs=72.4
Q ss_pred HHHHHHHHHhHhhhhheeecCcccc-hhHHHHHHHHHHhhHhhhhc--hhHHHHH-------HHhhccccccc-hhHHhH
Q psy3688 94 FIIVSAIFGNLLVIVSVMRHRKLRV-ITNYFVVSLAFADMLVAFGA--MGFNLSV-------EIFNRWLFGYF-MCDVWN 162 (286)
Q Consensus 94 ~i~~~gi~gN~lvl~~~~~~~~~~~-~~~~ll~~LaiaDll~~~~~--~p~~~~~-------~~~~~~~~g~~-~C~~~~ 162 (286)
+.++++.+.|-+.++.+..+|+.+= .-.++++.-|+-|++.++.- .|..+.. ...++|..+.. .=....
T Consensus 13 ~~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yry~F~~fi~dG~F~~~s~l~~~~l 92 (310)
T PF10319_consen 13 IFGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDLLVPICVHGYRYAFVVFISDGPFFEKSELGQHLL 92 (310)
T ss_pred HHHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHHHhhheeeccceEEEEEEcCCcCcCcchHHHHHH
Confidence 4567788899999999888877653 56688999999999987753 3332211 11123333221 111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Q psy3688 163 SLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVS 217 (286)
Q Consensus 163 ~~~~~~~~~S~~~l~~Is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~l~~ 217 (286)
.........|-..|..==+.||+++++|...++...+......+..+-.....+.
T Consensus 93 s~RCsfIs~sYaIL~~HFvYRYl~l~~~~~~~~~F~p~gl~~s~~~~~~h~~~W~ 147 (310)
T PF10319_consen 93 SIRCSFISGSYAILHIHFVYRYLVLFNSKFINKYFMPYGLIGSILYCLFHFASWH 147 (310)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhCcHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 2333334444455555558999999999776665555554444443333333333
No 32
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=96.13 E-value=0.091 Score=42.62 Aligned_cols=42 Identities=14% Similarity=0.276 Sum_probs=32.0
Q ss_pred cccccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy3688 151 WLFGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLD 192 (286)
Q Consensus 151 ~~~g~~~C~~~~~~~~~~~~~S~~~l~~Is~dRy~aI~~P~~ 192 (286)
....-..|.+..-+............+++|++||+-|+.-.|
T Consensus 110 p~ytI~vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~r 151 (226)
T PF06681_consen 110 PQYTIFVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKR 151 (226)
T ss_pred ceEEEEeehHHHhHHHHHhhhhccchhhhhhhhhheeeeccc
Confidence 334667899988776666666666777899999999998655
No 33
>KOG4564|consensus
Probab=95.49 E-value=1.9 Score=40.03 Aligned_cols=113 Identities=16% Similarity=0.158 Sum_probs=78.2
Q ss_pred hhhheeecCcccchhHHHHHHHHHHhhHhhhhchhHHHHHHHhhcc------------ccccchhHHhHHHHHHHHHHHH
Q psy3688 106 VIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRW------------LFGYFMCDVWNSLDVYFSSASI 173 (286)
Q Consensus 106 vl~~~~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~------------~~g~~~C~~~~~~~~~~~~~S~ 173 (286)
.+.++...|++|=..|++=.||-++=++-++..+.........+.. ..+...||....+...+..+..
T Consensus 165 Al~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ck~~~~~~~Yf~~aNf 244 (473)
T KOG4564|consen 165 ALIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVGCKLLFVFFQYFVLANF 244 (473)
T ss_pred HHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchhHHHHHHHHHHHHHHHH
Confidence 3344445677887789999999988888777555444433222111 2457799999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3688 174 LHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIF 222 (286)
Q Consensus 174 ~~l~~Is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~l~~~~~~~ 222 (286)
+-+.+=.+.=|-.++--... .+++-.....+.|.+..++..+-.+
T Consensus 245 ~WmlvEGlYLhtLlv~~~~s----er~~~~~y~~iGWG~P~v~v~~Wai 289 (473)
T KOG4564|consen 245 FWMLVEGLYLHTLLVVAFFS----ERRYFWLYLLIGWGVPAVFVVVWAI 289 (473)
T ss_pred HHHHHHHHHHHHhhheeecc----CccHHHHHHHHhhCCcHHHhhhHHh
Confidence 98888888777666654331 2455567788899998888865544
No 34
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=95.24 E-value=0.0098 Score=46.20 Aligned_cols=61 Identities=13% Similarity=0.335 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3688 162 NSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIF 222 (286)
Q Consensus 162 ~~~~~~~~~~S~~~l~~Is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~l~~~~~~~ 222 (286)
..+..++.....+..++|+++|-..|.+|.+...+++.+|.+..+.+..++.+..-+.|.+
T Consensus 48 TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~ 108 (153)
T PF03383_consen 48 TLFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPYF 108 (153)
T ss_pred eeeehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhcC
Confidence 3455667778888999999999999999999767899999999999888888887777775
No 35
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=95.03 E-value=2.3 Score=37.41 Aligned_cols=120 Identities=13% Similarity=0.085 Sum_probs=72.5
Q ss_pred ccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q psy3688 154 GYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQL 233 (286)
Q Consensus 154 g~~~C~~~~~~~~~~~~~S~~~l~~Is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~l~~~~~~~~~~~~~~~~~~ 233 (286)
.+..=|+..++.+...+.+...-++.++-|-..+..|.++++. .++-.+...-++.+.+++.+.|.... ...
T Consensus 99 Pn~~Lk~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~i-~~~i~~~~~P~i~i~p~~~~f~~~pa-------~G~ 170 (307)
T PF10322_consen 99 PNHFLKILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHKKI-CRKIFRIWIPFIFIYPFCFTFPMFPA-------LGY 170 (307)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchhHH-HHhHHHHHHHHHHHHHHHHHHHccCC-------cEE
Confidence 3456678888999999999999999999999999999876543 34444556666666777666554421 111
Q ss_pred ccccCCCcc----e----eeccceehhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3688 234 FRSHNPNSC----I----FVVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQE 281 (286)
Q Consensus 234 ~~~~~~~~c----~----~~~~~~~~~~~~~~~~~iPl~vi~~~y~~I~~~l~~~~ 281 (286)
|.+.+.+.- . ..+..........+....-++.+++++..+++++||.+
T Consensus 171 C~Ql~~Pf~fGAI~I~~~~~~~~~~~~~~~l~~s~~~~~~iii~N~lm~~Klr~~k 226 (307)
T PF10322_consen 171 CRQLDPPFPFGAIIITSTGSWFNIRNSIFHLFFSIFWMISIIILNILMFFKLRKLK 226 (307)
T ss_pred EEeCCCCCCCCEEEEEEEcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111111100 0 01111112222233333445667778888888888765
No 36
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=94.97 E-value=1.1 Score=38.82 Aligned_cols=119 Identities=21% Similarity=0.265 Sum_probs=68.3
Q ss_pred HHHHhHhhhhheeecCccc-chhHHHHHHHHHHhhHhhhhchhHHHHHHHhhccccccchhHHhHHHHHHHHHHHHHHHH
Q psy3688 99 AIFGNLLVIVSVMRHRKLR-VITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVYFSSASILHLC 177 (286)
Q Consensus 99 gi~gN~lvl~~~~~~~~~~-~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~g~~~C~~~~~~~~~~~~~S~~~l~ 177 (286)
+.+|..+.+.-+..+-|-| .++-.++..+.++++...+-.+...- .. ...|+ ..|.+..-+.......-.....
T Consensus 4 s~i~~~l~i~Pl~wH~ra~N~~~~~li~Wl~l~nl~~~INaiIW~~-n~-~~~~~---~wCDI~~kl~~~~~~g~~~a~l 78 (283)
T PF02076_consen 4 SFIAFVLLIVPLPWHWRARNIGTCSLIFWLFLSNLIYFINAIIWRD-ND-INWWP---VWCDISTKLIIGSSVGIPAASL 78 (283)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhhhhcCC-CC-CccCc---eeeeehHHHHHHHHHHHHHHHH
Confidence 3444444443333332333 47778899999999887653222211 11 12333 7899998887777766656666
Q ss_pred HHHHHHHHHhhcccccc--ccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy3688 178 CISVDRYYAIVQPLDYH--LIMTKSRLLIMLCIVWLSPALVSFLPIFL 223 (286)
Q Consensus 178 ~Is~dRy~aI~~P~~~~--~~~~~~~~~~~i~~~W~~s~l~~~~~~~~ 223 (286)
+|+-.=| .|..+.+.. +..++|+...=..+++.+.++......+.
T Consensus 79 cI~r~L~-~I~s~r~~~~~~~~~rr~~~~d~~i~~g~Pil~m~l~yiv 125 (283)
T PF02076_consen 79 CIMRRLY-RIASARAVSLSRSEKRRRIIIDLLICFGIPILQMALHYIV 125 (283)
T ss_pred HHHHHHH-HHhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6655444 344433211 11235666666888888888887665553
No 37
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=94.15 E-value=2.9 Score=34.89 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=40.4
Q ss_pred cccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchh
Q psy3688 153 FGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTK 199 (286)
Q Consensus 153 ~g~~~C~~~~~~~~~~~~~S~~~l~~Is~dRy~aI~~P~~~~~~~~~ 199 (286)
.+...||.......+.+..+.+.-..+++||++|..+..+|.+.++.
T Consensus 80 I~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~r~~ 126 (236)
T PF02175_consen 80 IDPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENTRTL 126 (236)
T ss_pred EchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccCcee
Confidence 35668899999999999999999999999999999998888775433
No 38
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=93.86 E-value=4.8 Score=36.30 Aligned_cols=39 Identities=21% Similarity=0.178 Sum_probs=31.5
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q psy3688 158 CDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLI 196 (286)
Q Consensus 158 C~~~~~~~~~~~~~S~~~l~~Is~dRy~aI~~P~~~~~~ 196 (286)
--+.+++....++.....+.++++||..|-..-..|.+.
T Consensus 123 l~~~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk~ 161 (365)
T PF03125_consen 123 LFIGGFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEKK 161 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344466677677777899999999999999998888874
No 39
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=92.95 E-value=6.3 Score=34.98 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=55.6
Q ss_pred ccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3688 154 GYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGW 225 (286)
Q Consensus 154 g~~~C~~~~~~~~~~~~~S~~~l~~Is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~l~~~~~~~~~~ 225 (286)
++..|.+...+.+.+..++..--+.+++.=|++....-.+.. -.++....-.+.|.++.+.++..+..+.
T Consensus 90 ~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~e~--i~~~s~yfH~~aW~iP~~~ti~vL~~~~ 159 (328)
T PF01534_consen 90 ENSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGSEA--IEKKSSYFHLVAWGIPAVLTIAVLALRK 159 (328)
T ss_pred CCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCcch--hhhhcchhhhHHhhhhHHHHHHHHHhcc
Confidence 467899999999999999999999999999998876433333 4566677889999999999977665443
No 40
>PF13853 7tm_4: Olfactory receptor
Probab=63.68 E-value=0.77 Score=35.47 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc---ccccccccccc--CCCcceee-ccceehhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3688 204 IMLCIVWLSPALVSFLPIFLGWY---TTHAHQLFRSH--NPNSCIFV-VNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEA 277 (286)
Q Consensus 204 ~~i~~~W~~s~l~~~~~~~~~~~---~~~~~~~~~~~--~~~~c~~~-~~~~~~~~~~~~~~~iPl~vi~~~y~~I~~~l 277 (286)
.+.+..|+.+++..++....... ....+..+|+. -...|.+. .++.+......+..+.|+.+++++|.+|.+.+
T Consensus 5 ~l~~~~~~~~~~~~l~~~~~~~~l~~~nii~~f~c~~~ll~LaC~dt~~~~~~~~~~~~~~~~~~~~~Il~SY~~Il~av 84 (144)
T PF13853_consen 5 LLAAGSWLSGLLNSLPHTLLTLSLCFCNIIHHFCCDPPLLKLACSDTSINEIVGFVVAIFILLGPLLLILFSYIRILRAV 84 (144)
T ss_pred hhhHHHHHHHHHHHHHHHHHHeeCCCCCCCcceeeCHHHhcccCCchhhhheeeecccceeEEEEeeccccceeEEEehh
Confidence 45667888888877766653221 11111122220 12245543 34555555666667799999999999999876
Q ss_pred HHh
Q psy3688 278 DRQ 280 (286)
Q Consensus 278 ~~~ 280 (286)
.|.
T Consensus 85 lki 87 (144)
T PF13853_consen 85 LKI 87 (144)
T ss_pred hcc
Confidence 654
No 41
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=63.00 E-value=7.9 Score=27.70 Aligned_cols=27 Identities=11% Similarity=0.165 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy3688 259 FWIPGVIMIYMYYQIYKEADRQEHMLF 285 (286)
Q Consensus 259 ~~iPl~vi~~~y~~I~~~l~~~~~~~~ 285 (286)
++.+++++.+.|..++|--||+.++..
T Consensus 12 ll~~vl~~~ifyFli~RPQrKr~K~~~ 38 (97)
T COG1862 12 LLPLVLIFAIFYFLIIRPQRKRMKEHQ 38 (97)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 344556677789989988877777653
No 42
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=55.28 E-value=30 Score=23.16 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=24.8
Q ss_pred ceehhhhhHHHHHHHHHHHH-HHHHHHHHHHHHhhhhh
Q psy3688 248 RIYCVVSSCVSFWIPGVIMI-YMYYQIYKEADRQEHML 284 (286)
Q Consensus 248 ~~~~~~~~~~~~~iPl~vi~-~~y~~I~~~l~~~~~~~ 284 (286)
..|.++..++..+.|++++. +|..++.+.+.++.++.
T Consensus 18 dP~~Fl~~vll~LtPlfiisa~lSwkLaK~ie~~ere~ 55 (74)
T PF15086_consen 18 DPYEFLTTVLLILTPLFIISAVLSWKLAKAIEKEEREK 55 (74)
T ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666667778877664 57778888887666553
No 43
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=51.10 E-value=30 Score=23.83 Aligned_cols=22 Identities=14% Similarity=0.448 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhc
Q psy3688 264 VIMIYMYYQIYKEADRQEHMLF 285 (286)
Q Consensus 264 ~vi~~~y~~I~~~l~~~~~~~~ 285 (286)
+++++.|..+.+.-||++|+..
T Consensus 10 ~~~~i~yf~~~rpqkk~~k~~~ 31 (82)
T PF02699_consen 10 IIFVIFYFLMIRPQKKQQKEHQ 31 (82)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHhhheecHHHHHHHHHH
Confidence 5566678878877777776654
No 44
>PF05241 EBP: Emopamil binding protein ; InterPro: IPR007905 Emopamil binding protein (EBP) is a nonglycosylated type I integral membrane protein of endoplasmic reticulum and shows high level expression in epithelial tissues. The EBP protein has emopamil binding domains, including the sterol acceptor site and the catalytic centre, which show Delta8-Delta7 sterol isomerase activity. Human sterol isomerase, a homologue of mouse EBP, is suggested not only to play a role in cholesterol biosynthesis, but also to affect lipoprotein internalisation. In humans, mutations of EBP are known to cause the genetic disorder of X-linked dominant chondrodysplasia punctata (CDPX2). This syndrome of humans is lethal in most males, and affected females display asymmetric hyperkeratotic skin and skeletal abnormalities [].; GO: 0047750 cholestenol delta-isomerase activity, 0016125 sterol metabolic process, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=49.76 E-value=51 Score=26.85 Aligned_cols=36 Identities=11% Similarity=0.215 Sum_probs=30.8
Q ss_pred ceehhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3688 248 RIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHM 283 (286)
Q Consensus 248 ~~~~~~~~~~~~~iPl~vi~~~y~~I~~~l~~~~~~ 283 (286)
-.|.++...+..++|+.++.-++-+|.+..+..+||
T Consensus 159 W~y~v~~N~iWivvP~~~l~~s~~~i~~a~~~~~~~ 194 (194)
T PF05241_consen 159 WFYFVFPNGIWIVVPLLLLYQSWKEIARAFRAAQKK 194 (194)
T ss_pred eeehhhcchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 355777888889999999999999999999888765
No 45
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=46.55 E-value=47 Score=21.54 Aligned_cols=35 Identities=6% Similarity=0.040 Sum_probs=22.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy3688 251 CVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHMLF 285 (286)
Q Consensus 251 ~~~~~~~~~~iPl~vi~~~y~~I~~~l~~~~~~~~ 285 (286)
....+.+++++-.++...-+.+.-+..|+.+|+++
T Consensus 24 il~~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l~ 58 (68)
T PF06305_consen 24 ILIAFLLGALLGWLLSLPSRLRLRRRIRRLRKELK 58 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666667776666654
No 46
>PF10325 7TM_GPCR_Srz: Serpentine type 7TM GPCR chemoreceptor Srz; InterPro: IPR018817 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class z (Srz), a solo family amongst the superfamilies of chemoreceptors [, ]. The genes encoding Srz appear to be under strong adaptive evolutionary pressure [].
Probab=45.07 E-value=1.9e+02 Score=24.44 Aligned_cols=111 Identities=10% Similarity=0.124 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-cchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCC
Q psy3688 162 NSLDVYFSSASILHLCCISVDRYYAIVQPLDYHL-IMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPN 240 (286)
Q Consensus 162 ~~~~~~~~~~S~~~l~~Is~dRy~aI~~P~~~~~-~~~~~~~~~~i~~~W~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (286)
.+.......+--..+..+|++|++--..|..-+. ..+++.....+-...++..+-.+............. ..
T Consensus 86 ~~~l~i~~~v~~lllsLLAIqRFllyFfP~~Ek~v~~~~k~~~~~I~~lY~~~~~k~i~~~~~~~~~~~~~-------~~ 158 (267)
T PF10325_consen 86 IFILYIITQVFHLLLSLLAIQRFLLYFFPSSEKYVNFSQKNIKKIIWFLYIFFILKDIVFFIWYFISFNNE-------ST 158 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------cc
Confidence 3344445556667889999999999999973222 224454444444444444433322221111111000 00
Q ss_pred cceeeccceehhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3688 241 SCIFVVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQE 281 (286)
Q Consensus 241 ~c~~~~~~~~~~~~~~~~~~iPl~vi~~~y~~I~~~l~~~~ 281 (286)
.........+. ...+... +-+.+-..+|.-|....||.+
T Consensus 159 ~~~~~~~~~~~-~~~~~~~-~ll~~S~lLYIPI~isirK~~ 197 (267)
T PF10325_consen 159 EEIETFSYIYV-IFYIILN-ILLFLSALLYIPIFISIRKLS 197 (267)
T ss_pred hhhhHHHHHHH-HHHHHhh-HHHHHHHHHHHHHHHHHHHhh
Confidence 00011111222 2222222 334566778999998888766
No 47
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=44.43 E-value=15 Score=27.54 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=7.6
Q ss_pred HHHHHhHhhhhheeecCcccchh
Q psy3688 98 SAIFGNLLVIVSVMRHRKLRVIT 120 (286)
Q Consensus 98 ~gi~gN~lvl~~~~~~~~~~~~~ 120 (286)
.|++|=+++++.++|+++++++.
T Consensus 75 aGvIg~Illi~y~irR~~Kk~~~ 97 (122)
T PF01102_consen 75 AGVIGIILLISYCIRRLRKKSSS 97 (122)
T ss_dssp HHHHHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHHHHHHHhccCCC
Confidence 34444444443334444434433
No 48
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=39.50 E-value=28 Score=24.12 Aligned_cols=21 Identities=14% Similarity=0.477 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q psy3688 264 VIMIYMYYQIYKEADRQEHML 284 (286)
Q Consensus 264 ~vi~~~y~~I~~~l~~~~~~~ 284 (286)
+++++.|..+.|--||++++.
T Consensus 11 v~~~i~yf~~~rpqkK~~k~~ 31 (84)
T TIGR00739 11 LIFLIFYFLIIRPQRKRRKAH 31 (84)
T ss_pred HHHHHHHHheechHHHHHHHH
Confidence 335567777777777766654
No 49
>COG3771 Predicted membrane protein [Function unknown]
Probab=34.20 E-value=88 Score=21.81 Aligned_cols=36 Identities=17% Similarity=0.116 Sum_probs=25.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy3688 251 CVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHMLFR 286 (286)
Q Consensus 251 ~~~~~~~~~~iPl~vi~~~y~~I~~~l~~~~~~~~r 286 (286)
.-..+.+++.+--++....|.|.-...+|-.|+++|
T Consensus 45 la~lF~~G~~lgwli~g~fy~k~~l~~~~l~rqiKr 80 (97)
T COG3771 45 LATLFAAGFALGWLICGLFYLKVRLSLMRLERQIKR 80 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888888888999887776666666543
No 50
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=33.56 E-value=81 Score=22.01 Aligned_cols=23 Identities=9% Similarity=0.443 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhc
Q psy3688 263 GVIMIYMYYQIYKEADRQEHMLF 285 (286)
Q Consensus 263 l~vi~~~y~~I~~~l~~~~~~~~ 285 (286)
+++++++|..=.++-||.+|.+.
T Consensus 44 Fil~VilwfvCC~kRkrsRrPIY 66 (94)
T PF05393_consen 44 FILLVILWFVCCKKRKRSRRPIY 66 (94)
T ss_pred HHHHHHHHHHHHHHhhhccCCcc
Confidence 45556666665555555555443
No 51
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=29.46 E-value=63 Score=23.51 Aligned_cols=23 Identities=17% Similarity=0.457 Sum_probs=13.8
Q ss_pred HHHH-HHHHHHHHHHHHHHhhhhh
Q psy3688 262 PGVI-MIYMYYQIYKEADRQEHML 284 (286)
Q Consensus 262 Pl~v-i~~~y~~I~~~l~~~~~~~ 284 (286)
|+++ .++.|..+.|--||++++.
T Consensus 23 ~lvii~~i~yf~~~RpqkK~~k~~ 46 (106)
T PRK05585 23 PLVVFFAIFYFLIIRPQQKRQKEH 46 (106)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHH
Confidence 4333 3446777777777666654
No 52
>PF09882 DUF2109: Predicted membrane protein (DUF2109); InterPro: IPR019214 This entry is found in various hypothetical archaeal proteins and has no known function.
Probab=27.25 E-value=1.4e+02 Score=20.31 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=34.7
Q ss_pred HHHHHHHhHhhhhheeecCcccchhHHHHHHHHHHhhHhhhhchhHHH
Q psy3688 96 IVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNL 143 (286)
Q Consensus 96 ~~~gi~gN~lvl~~~~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~ 143 (286)
.++|+++=...+-++..+.+.++-.++=..|-|++-++.+..--|+..
T Consensus 4 ~i~g~Iai~~~iR~~~~~~r~~KL~yLnv~~F~iaalIaL~i~~P~g~ 51 (78)
T PF09882_consen 4 IIIGIIAILMAIRIFLTKSRARKLLYLNVINFAIAALIALYIKSPMGA 51 (78)
T ss_pred HHHHHHHHHHHHHHHHhHhHHHhhhHHHHHHHHHHHHHHHHhCCcHHH
Confidence 345666666666676667777777888888999998888776666554
No 53
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=26.84 E-value=1.4e+02 Score=18.06 Aligned_cols=22 Identities=0% Similarity=0.025 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q psy3688 262 PGVIMIYMYYQIYKEADRQEHM 283 (286)
Q Consensus 262 Pl~vi~~~y~~I~~~l~~~~~~ 283 (286)
.++.+++..+.++...++++|+
T Consensus 15 ~v~~~~~F~gi~~w~~~~~~k~ 36 (49)
T PF05545_consen 15 TVLFFVFFIGIVIWAYRPRNKK 36 (49)
T ss_pred HHHHHHHHHHHHHHHHcccchh
Confidence 3344444445555555555443
No 54
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=26.69 E-value=1e+02 Score=19.45 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3688 259 FWIPGVIMIYMYYQIYKEADRQEHM 283 (286)
Q Consensus 259 ~~iPl~vi~~~y~~I~~~l~~~~~~ 283 (286)
|++-+++.+++|.-|+..-|++++.
T Consensus 5 f~~ti~lvv~LYgY~yhLYrsek~G 29 (56)
T TIGR02736 5 FAFTLLLVIFLYAYIYHLYRSQKKG 29 (56)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccc
Confidence 3445666777888887776666544
No 55
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=26.36 E-value=74 Score=20.13 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhHhhhhheee
Q psy3688 91 LMLFIIVSAIFGNLLVIVSVMR 112 (286)
Q Consensus 91 ~~~~i~~~gi~gN~lvl~~~~~ 112 (286)
+++++.+--++||+.++---.+
T Consensus 7 lIIviVlgvIigNia~LK~sAk 28 (55)
T PF11446_consen 7 LIIVIVLGVIIGNIAALKYSAK 28 (55)
T ss_pred HHHHHHHHHHHhHHHHHHHhcc
Confidence 3444444456799988865433
No 56
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=20.20 E-value=2e+02 Score=16.91 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhhhhhc
Q psy3688 268 YMYYQIYKEADRQEHMLF 285 (286)
Q Consensus 268 ~~y~~I~~~l~~~~~~~~ 285 (286)
..-.-+||+...++|...
T Consensus 24 iva~~iYRKw~aRkr~l~ 41 (43)
T PF08114_consen 24 IVALFIYRKWQARKRALQ 41 (43)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334456676655555443
No 57
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=20.02 E-value=2.3e+02 Score=18.31 Aligned_cols=24 Identities=8% Similarity=-0.049 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q psy3688 261 IPGVIMIYMYYQIYKEADRQEHML 284 (286)
Q Consensus 261 iPl~vi~~~y~~I~~~l~~~~~~~ 284 (286)
.-+.+.++.+..|+...|+++|..
T Consensus 14 ~t~~~~l~fiavi~~ayr~~~K~~ 37 (60)
T COG4736 14 GTIAFTLFFIAVIYFAYRPGKKGE 37 (60)
T ss_pred HHHHHHHHHHHHHHHHhcccchhh
Confidence 334445555666666666666543
Done!