RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3688
(286 letters)
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 267 bits (683), Expect = 6e-87
Identities = 77/227 (33%), Positives = 131/227 (57%), Gaps = 1/227 (0%)
Query: 59 TSGVISNDSYFPLYDYDERSFALSLLITLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRV 118
S + + D+D + + ++M I+++ +FGN+LVI ++ + +L+
Sbjct: 14 GSAFLLAPNRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQT 73
Query: 119 ITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVYFSSASILHLCC 178
+TNYF+ SLA AD+++ + F + + W FG F C+ W S+DV +ASI LC
Sbjct: 74 VTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCV 133
Query: 179 ISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYT-THAHQLFRSH 237
I+VDRY+AI P Y ++TK++ +++ +VW+ L SFLPI + WY TH +
Sbjct: 134 IAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYA 193
Query: 238 NPNSCIFVVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHML 284
C F N+ Y + SS VSF++P VIM+++Y ++++EA RQ ++
Sbjct: 194 EETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIF 240
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 263 bits (673), Expect = 3e-85
Identities = 78/266 (29%), Positives = 139/266 (52%), Gaps = 8/266 (3%)
Query: 21 LSNHTLTAAIAPTLRKPNASIYFTNGSVFNYLLTEANATSGVISNDSYFPLYDYDERSFA 80
++ T + + R A++ +N A ++ + A
Sbjct: 125 VAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTW-------DAYAA 177
Query: 81 LSLLITLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMG 140
+ + ++M I+++ +FGN+LVI ++ + +L+ +TNYF+ SLA AD+++ +
Sbjct: 178 DEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVP 237
Query: 141 FNLSVEIFNRWLFGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKS 200
F + + W FG F C+ W S+DV +ASI LC I+VDRY+AI P Y ++TK+
Sbjct: 238 FGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKN 297
Query: 201 RLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSH-NPNSCIFVVNRIYCVVSSCVSF 259
+ +++ +VW+ L SFLPI + WY + + C F N+ Y + SS VSF
Sbjct: 298 KARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSF 357
Query: 260 WIPGVIMIYMYYQIYKEADRQEHMLF 285
++P VIM+++Y ++++EA RQ +
Sbjct: 358 YVPLVIMVFVYSRVFQEAKRQLQKID 383
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 250 bits (639), Expect = 1e-80
Identities = 52/198 (26%), Positives = 98/198 (49%), Gaps = 2/198 (1%)
Query: 87 LKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVE 146
+L+ + + I GN+LV+VS+ +R L+ + NYF+ SLA AD+++ +M
Sbjct: 25 FIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYT 84
Query: 147 IFNRWLFGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIML 206
+ W G +CD+W +LD S+AS+++L IS DRY+ + +PL Y + T +M+
Sbjct: 85 VIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMI 144
Query: 207 CIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIFVVNRIYCVVSSCVSFWIPGVIM 266
W+ ++ P L W + F N ++ +F++P +IM
Sbjct: 145 AAAWVLSFILWA-PAILFWQFIVGVRTVE-DGECYIQFFSNAAVTFGTAIAAFYLPVIIM 202
Query: 267 IYMYYQIYKEADRQEHML 284
+Y+ I + + + ++
Sbjct: 203 TVLYWHISRASKSRINIF 220
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 247 bits (631), Expect = 1e-79
Identities = 53/198 (26%), Positives = 101/198 (51%), Gaps = 2/198 (1%)
Query: 87 LKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVE 146
++++ I + + NLLV+ +V RKL + N ++VSL+ AD++V M N+
Sbjct: 10 PLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYL 69
Query: 147 IFNRWLFGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIML 206
+ ++W G +C W S+D S+ASI + + +DRY ++ QPL Y TK+R +
Sbjct: 70 LMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATI 129
Query: 207 CIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIFVVNRIYCVVSSCVSFWIPGVIM 266
W + + +PI GW R + F + V+++ ++F++P ++M
Sbjct: 130 LGAWFL-SFLWVIPIL-GWNHFMQQTSVRREDKCETDFYDVTWFKVMTAIINFYLPTLLM 187
Query: 267 IYMYYQIYKEADRQEHML 284
++ Y +IYK + ++
Sbjct: 188 LWFYAKIYKAVRQHCNIF 205
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 240 bits (615), Expect = 7e-79
Identities = 78/196 (39%), Positives = 123/196 (62%), Gaps = 1/196 (0%)
Query: 90 LLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFN 149
LLM +++ + GN+LVI ++ ++L+ +TN F+ SLA AD++V + F ++ +
Sbjct: 16 LLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRG 75
Query: 150 RWLFGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIV 209
WL+G F+C++W SLDV +ASI LC I++DRY AI P Y +MT++R +++C V
Sbjct: 76 TWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTV 135
Query: 210 WLSPALVSFLPIFLGWYTTHAHQLFRSHN-PNSCIFVVNRIYCVVSSCVSFWIPGVIMIY 268
W ALVSFLPI + W+ Q + + P C FV NR Y + SS +SF+IP +IMI+
Sbjct: 136 WAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIF 195
Query: 269 MYYQIYKEADRQEHML 284
+ ++Y+EA Q +
Sbjct: 196 VALRVYREAKEQIRKI 211
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 232 bits (592), Expect = 1e-73
Identities = 70/201 (34%), Positives = 109/201 (54%), Gaps = 14/201 (6%)
Query: 86 TLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSV 145
L +I++ +FGN LV ++V++ R L+ TNY VVSLA AD+LVA M + + +
Sbjct: 39 AYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYL 98
Query: 146 EIFN-RWLFGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKS---R 201
E+ W F CDV+ +LDV +ASI +LC IS+DRY A+V P+ Y +S R
Sbjct: 99 EVTGGVWNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRR 158
Query: 202 LLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIFVVNRIYCVVSSCVSFWI 261
+ +M+ VW+ VS P+ G+ TT +P C N + + SS VSF++
Sbjct: 159 VALMITAVWVLAFAVSC-PLLFGFNTT--------GDPTVCSI-SNPDFVIYSSVVSFYL 208
Query: 262 PGVIMIYMYYQIYKEADRQEH 282
P + + +Y +IY ++
Sbjct: 209 PFGVTVLVYARIYVVLKQRRR 229
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 232 bits (592), Expect = 2e-73
Identities = 60/212 (28%), Positives = 103/212 (48%), Gaps = 12/212 (5%)
Query: 82 SLLITLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGF 141
+ ++ I + L I V AI GN+LV +V + L+ +TNYFVVSLA AD+ V A+
Sbjct: 18 IMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAI-- 75
Query: 142 NLSVEIFNRWLFGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSR 201
++ I + C + + +SI L I++DRY AI PL Y+ ++T +R
Sbjct: 76 PFAITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTR 135
Query: 202 LLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSH------NPNSCIF--VVNRIYCVV 253
++ I W+ + P+ GW + ++H +C+F VV Y V
Sbjct: 136 AKGIIAICWVLSFAIGLTPML-GWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVY 194
Query: 254 SSCV-SFWIPGVIMIYMYYQIYKEADRQEHML 284
+ +P ++M+ +Y +I+ A RQ ++
Sbjct: 195 FNFFACVLVPLLLMLGVYLRIFLAARRQLNIF 226
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 227 bits (580), Expect = 4e-72
Identities = 61/230 (26%), Positives = 103/230 (44%), Gaps = 12/230 (5%)
Query: 64 SNDSYFPLYDYDERSFALSLLITLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYF 123
F Y D+ + ++ I + L I V AI GN+LV +V + L+ +TNYF
Sbjct: 10 IFCLVFADYKDDDDGAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYF 69
Query: 124 VVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVYFSSASILHLCCISVDR 183
VVSLA AD+ V A+ ++ I + C + + +SI L I++DR
Sbjct: 70 VVSLAAADIAVGVLAI--PFAITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDR 127
Query: 184 YYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSH------ 237
Y AI PL Y+ ++T +R ++ I W+ + P+ GW + ++H
Sbjct: 128 YIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPML-GWNNCGQPKEGKNHSQGCGE 186
Query: 238 NPNSCIF---VVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHML 284
+C+F V + +P ++M+ +Y +I+ A RQ L
Sbjct: 187 GQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLADL 236
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 174 bits (442), Expect = 4e-51
Identities = 36/202 (17%), Positives = 80/202 (39%), Gaps = 9/202 (4%)
Query: 85 ITLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLS 144
I L ++ + I I N+ V++++ + +K YF+ +LA +D+L NL
Sbjct: 63 IKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYT-ANLL 121
Query: 145 VEIFNRWLFGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLI 204
+ + + SAS+ L I+++RY +++ H RL +
Sbjct: 122 LSGATTYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITMLKMK-LHNGSNNFRLFL 180
Query: 205 MLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIFVVNRIYCVVSSCVSFWIPGV 264
++ W+ ++ LPI GW + + S + + + ++ F + +
Sbjct: 181 LISACWVISLILGGLPIM-GWNCIS------ALSSCSTVLPLYHKHYILFCTTVFTLLLL 233
Query: 265 IMIYMYYQIYKEADRQEHMLFR 286
++ +Y +IY +
Sbjct: 234 SIVILYCRIYSLVRTRNIFEML 255
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 134 bits (338), Expect = 2e-36
Identities = 50/204 (24%), Positives = 84/204 (41%), Gaps = 17/204 (8%)
Query: 90 LLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVA-FGAMGFNLSVEIF 148
+ + + GN +VI + + L+ N F+++LAF+D +
Sbjct: 39 IFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFL 98
Query: 149 NRWLFGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCI 208
+W+FG+ C V+ + F SI+ + IS+DRY I +P+ M+ R IM+
Sbjct: 99 KKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIF 158
Query: 209 VWLSPALVSFLPIFLGW--YTTHAHQLFRSHNPNSCIF------VVNRIYCVVSSCVSFW 260
VWL L + PIF GW YT +C F R + + F+
Sbjct: 159 VWLWSVLWAIGPIF-GWGAYTLEGVLC-------NCSFDYISRDSTTRSNILCMFILGFF 210
Query: 261 IPGVIMIYMYYQIYKEADRQEHML 284
P +I+ + Y+ I E +
Sbjct: 211 GPILIIFFCYFNIVMSVSNHEKEM 234
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 131 bits (332), Expect = 3e-36
Identities = 50/228 (21%), Positives = 110/228 (48%), Gaps = 9/228 (3%)
Query: 50 NYLLTEANATSGVISNDSYFPLYDYDERSFALSLLITLKILLMLFIIVSAIFGNLLVIVS 109
N L +++ + + +N S + + I L I+V+++ GN++V+
Sbjct: 3 NVLPVDSDLSPNISTNTSEPNQFVQP------AWQIVLWAAAYTVIVVTSVVGNVVVMWI 56
Query: 110 VMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVYFS 169
++ H+++R +TNYF+V+LAFA+ +A N + + N W +G F C N +
Sbjct: 57 ILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAV 116
Query: 170 SASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSF-LPIFLGWYTT 228
ASI + ++ DRY AI+ PL ++ + +++C++W+ L++F + T
Sbjct: 117 FASIYSMTAVAFDRYMAIIHPLQPR--LSATATKVVICVIWVLALLLAFPQGYYSTTETM 174
Query: 229 HAHQLFRSHNPNSCIFVVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKE 276
+ + P + ++Y + + + +++P +++ Y Y +
Sbjct: 175 PSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGIT 222
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 129 bits (327), Expect = 1e-35
Identities = 45/235 (19%), Positives = 92/235 (39%), Gaps = 13/235 (5%)
Query: 44 TNGSVFNYLLTEANATSGVISNDSYFPLYDYDERSFALSLLITLKILLMLFIIVSAIFGN 103
T G F +N T V S ++ + A ++ M +I+ N
Sbjct: 5 TEGPNFYV--PFSNKTGVVRSP------FEAPQYYLAEPWQFSMLAAYMFLLIMLGFPIN 56
Query: 104 LLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNS 163
L + ++H+KLR NY +++LA AD+ + FG L + ++FG C++
Sbjct: 57 FLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGF 116
Query: 164 LDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFL 223
++ L ++++RY + +P+ ++ ++ + W+ + P+
Sbjct: 117 FATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACAAPPLV- 174
Query: 224 GW--YTTHAHQLFRSHN-PNSCIFVVNRIYCVVSSCVSFWIPGVIMIYMYYQIYK 275
GW Y Q + N + + V F IP +++ + Y Q+
Sbjct: 175 GWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVF 229
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 116 bits (292), Expect = 4e-30
Identities = 48/239 (20%), Positives = 92/239 (38%), Gaps = 15/239 (6%)
Query: 44 TNGSVFNYLLTEANATSGVISNDSYFPLYDYDERSFALSLLITLKILLMLFIIVSAIFGN 103
+ N + + + +F L + L L + V + GN
Sbjct: 84 DALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLGAFLPLGLKVTIVGLYLAVCVGGLLGN 143
Query: 104 LLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNS 163
LV+ ++RH K++ TN ++ +LA AD LV + F + + W FG +C +
Sbjct: 144 CLVMYVILRHTKMKTATNIYIFNLALADTLVLLT-LPFQGTDILLGFWPFGNALCKTVIA 202
Query: 164 LDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFL 223
+D Y S L +SVDRY AI P+ + T S+ + +W ++V +P+ +
Sbjct: 203 IDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVG-VPVAI 261
Query: 224 GWYTTHAHQLFRSHNPNSCIFVVN-------RIYCVVSSCVSFWIPGVIMIYMYYQIYK 275
C+ + ++ + SF +P +++ Y + +
Sbjct: 262 ------MGSAQVEDEEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIR 314
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 111 bits (279), Expect = 3e-28
Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 5/198 (2%)
Query: 89 ILLMLFIIVSA--IFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVE 146
++ L+ IV +FGN LV+ ++R+ K++ TN ++ +LA AD L + F
Sbjct: 19 TIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATST-LPFQSVNY 77
Query: 147 IFNRWLFGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIML 206
+ W FG +C + S+D Y SI LC +SVDRY A+ P+ T I+
Sbjct: 78 LMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVN 137
Query: 207 CIVWLSPALVSFLPIFLGWYTTHAHQLFR-SHNPNSCIFVVNRIYCVVSSCVSFWIPGVI 265
W+ + + LP+ T + + + + + + +F +P +I
Sbjct: 138 VCNWILSSAIG-LPVMFMATTKYRQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLI 196
Query: 266 MIYMYYQIYKEADRQEHM 283
+ Y + ++
Sbjct: 197 ITVCYGLMILRLKSVRNI 214
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 106 bits (265), Expect = 4e-26
Identities = 51/220 (23%), Positives = 90/220 (40%), Gaps = 14/220 (6%)
Query: 64 SNDSYFPLYDYD------ERSFALSLLITLKILLMLFIIVSAIFGNLLVIVSVMRHRKLR 117
+ DYD R + + I ++ I GN LVI+ + +KLR
Sbjct: 21 NYTEEMGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLR 80
Query: 118 VITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVYFSSASILHLC 177
+T+ + + L+ AD+L + F +V+ W FG F+C + + +S+ L
Sbjct: 81 SMTDKYRLHLSVADLLFVIT-LPF-WAVDAVANWYFGNFLCKAVHVIYTVNLYSSVWILA 138
Query: 178 CISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLP--IFLGWYTTHAHQLFR 235
IS+DRY AIV + ++ VW+ L++ +P IF +
Sbjct: 139 FISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLT-IPDFIFANVSEADDRYICD 197
Query: 236 SHNPNSCIFVVNRIYCVVSSCVSFWIPGVIMIYMYYQIYK 275
PN VV + ++ V +PG++++ Y I
Sbjct: 198 RFYPNDLWVVVFQFQHIM---VGLILPGIVILSCYCIIIS 234
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein;
NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Length = 32
Score = 52.0 bits (125), Expect = 8e-10
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 170 SASILHLCCISVDRYYAIVQPLDYHLIMTKSR 201
++SI+HLC IS+DRY++I Q ++Y+L T R
Sbjct: 1 TSSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 2e-04
Identities = 61/356 (17%), Positives = 91/356 (25%), Gaps = 146/356 (41%)
Query: 7 LKQTSTTSLILSDLLSNHTLTAAIAPTLRKPNASIYFTNGSV----FNYLLTEANATSGV 62
+ ST L LS H ++ L P + +F S FN +L E T G
Sbjct: 1 MDAYSTRPLTLS-----H---GSLEHVLLVP-TASFF-IASQLQEQFNKILPEP--TEGF 48
Query: 63 ISND---SYFPLY--------DYDERSFALSLLITLKILLMLFII-------VSAIFGNL 104
++D + L E S L + L F + A+ L
Sbjct: 49 AADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL 108
Query: 105 LVIVSVMRHRKLRVITNYFVV-------------SLAF-------ADMLVAFGAMGFNLS 144
L + +I NY S F A ++ FG G
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG---- 164
Query: 145 VEIFNRWLFGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLI 204
N+ D YF L+ Y+ +V LI + L
Sbjct: 165 -----------------NT-DDYFEELRDLY------QTYHVLVGD----LIKFSAETLS 196
Query: 205 MLC----------------IVWLS-----P-------ALVSFLPIFL---GWYTTHAHQL 233
L + WL P +S I + Y A L
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256
Query: 234 ------FRSHNPNSCIFVVNRIYCVVSSCVS-------------------FWIPGV 264
RS+ + V + ++ F+I GV
Sbjct: 257 GFTPGELRSY-LKGATGHSQGL--VTAVAIAETDSWESFFVSVRKAITVLFFI-GV 308
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.088
Identities = 46/311 (14%), Positives = 86/311 (27%), Gaps = 103/311 (33%)
Query: 15 LILSDLLSNHTLTA-----AIAPTLRKPNASIYFTNGSVFNYLLTEANATSGVISNDSYF 69
L+L ++ + A I T R V ++L A T+ + +
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTR---------FKQVTDFL--SAATTTHISLDHHSM 296
Query: 70 PLYDYDERSFALSLLITLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAF 129
L DE SLL LK L + L N +S+
Sbjct: 297 TLTP-DE---VKSLL--LKYLDC--------------RPQDLPREVLTT--NPRRLSI-- 332
Query: 130 ADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVY----FSSASILHLCCISVDRYY 185
+ + W D W ++ +S+ L + +
Sbjct: 333 ------IAES---IRDGL-ATW-------DNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 186 ---AIVQPLDYHLIMTKSRLLIMLCIVWLSPA----------LVSFLPIFLGW----YTT 228
++ P H I T +L ++W L + + +
Sbjct: 376 DRLSVF-PPSAH-IPTI-----LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 229 HAHQL-FRSHNPN------SCI--FVVNRIYCVVSSCVSFWIPGVIMIYMYYQI-Y--KE 276
+ L + N S + + + + + + ++ Y Y I + K
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFD-SDDLIPPYLDQ----YFYSHIGHHLKN 483
Query: 277 ADRQEHM-LFR 286
+ E M LFR
Sbjct: 484 IEHPERMTLFR 494
Score = 31.4 bits (70), Expect = 0.44
Identities = 40/259 (15%), Positives = 81/259 (31%), Gaps = 46/259 (17%)
Query: 50 NYLLTEANATSGVISNDSYFPLYDYDERS-------FALSLLITLKILLMLFI----IVS 98
N+ + + +I + S L + R F S I +L +++
Sbjct: 346 NWKHVNCDKLTTIIES-SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 99 AIFGNLLVIVS-VMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFM 157
+ N L S V + K I+ S+ ++ V + L I + Y +
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIP---SIYL-ELKVKLENE-YALHRSIVDH----YNI 455
Query: 158 CDVW-------NSLDVYFSSASILHLCCISVDRYYAIVQP--LDYHLIMTKSRLLIMLCI 208
+ LD YF S HL I + + LD+ + K +
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK---IRHDST 512
Query: 209 VWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCI------FVVN-RIYCVVSSCVSFWI 261
W + + L +Y + + + + F+ + S +
Sbjct: 513 AWNASGSILNTLQQLKFYKPY---ICDNDPKYERLVNAILDFLPKIEENLICSKYTD--L 567
Query: 262 PGVIMIYMYYQIYKEADRQ 280
+ ++ I++EA +Q
Sbjct: 568 LRIALMAEDEAIFEEAHKQ 586
>2vse_A MTX holotoxin, mosquitocidal toxin; ADP-ribosyltransferase,
lectin, ricin-B-like domain; 2.5A {Lysinibacillus
sphaericus} PDB: 2vsa_A
Length = 841
Score = 29.9 bits (66), Expect = 1.1
Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 9/77 (11%)
Query: 2 PTNANLKQTSTTSLILSDLLSNHTLTAAIAPTLRKPNASIYFTNGSVFNYLLTEANATSG 61
P + Q ++ + ++ + L + P+ PN + ++ +G
Sbjct: 6 PKDNTWIQAASLTWLMDMSSLLYQLISTRIPSFASPNG---------LHMREQTIDSNTG 56
Query: 62 VISNDSYFPLYDYDERS 78
I D+ L +D R
Sbjct: 57 QIQIDNEHRLLRWDRRP 73
>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics,
joint center structural genomics, JCSG, protein
structure initiative; HET: MSE PG4; 1.70A {Listeria
monocytogenes} SCOP: c.1.15.4
Length = 296
Score = 27.5 bits (61), Expect = 5.0
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 128 AFADMLVAFGAMGFNLSVEIFNRWL 152
FA +L G + VE+ + +
Sbjct: 242 GFAKILKEHGVNPRVMGVEVISDSM 266
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis;
HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP:
a.151.1.1 c.2.1.7 d.58.39.1
Length = 404
Score = 27.2 bits (61), Expect = 6.2
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 247 NR--IYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHMLFR 286
NR +Y + + + +I + + + ++ H LFR
Sbjct: 49 NRVEVYASGARDRAEELGDLIHDDAW--VKRGSEAVRH-LFR 87
>3rki_A Fusion glycoprotein F0; fusion protein, viral protein; HET: NAG;
3.20A {Human respiratory syncytial virus}
Length = 528
Score = 26.8 bits (58), Expect = 8.8
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 216 VSFLPIFLGWYTTHAHQLFRSHNPNSCIFVVNRIYC 251
+ GWY +A + +C NR++C
Sbjct: 323 ICLTRTDRGWYCDNAGSVSFFPQAETCKVQSNRVFC 358
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.141 0.439
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,300,762
Number of extensions: 246523
Number of successful extensions: 524
Number of sequences better than 10.0: 1
Number of HSP's gapped: 492
Number of HSP's successfully gapped: 28
Length of query: 286
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 193
Effective length of database: 4,105,140
Effective search space: 792292020
Effective search space used: 792292020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 57 (26.2 bits)