RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3688
         (286 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 76.2 bits (186), Expect = 2e-16
 Identities = 35/204 (17%), Positives = 81/204 (39%), Gaps = 1/204 (0%)

Query: 72  YDYDERSFALSLLITLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFAD 131
           ++  +   A     ++    M  +I+     N L +   ++H+KLR   NY +++LA AD
Sbjct: 24  FEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVAD 83

Query: 132 MLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPL 191
           + + FG     L   +   ++FG   C++           ++  L  ++++RY  + +P+
Sbjct: 84  LFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPM 143

Query: 192 DYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSC-IFVVNRIY 250
                     ++ +     ++ A  +   +    Y     Q     +  +      N  +
Sbjct: 144 SNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESF 203

Query: 251 CVVSSCVSFWIPGVIMIYMYYQIY 274
            +    V F IP +++ + Y Q+ 
Sbjct: 204 VIYMFVVHFIIPLIVIFFCYGQLV 227


>d1u60a_ e.3.1.2 (A:) Probable glutaminase YbaS {Escherichia coli
           [TaxId: 562]}
          Length = 309

 Score = 28.2 bits (63), Expect = 1.2
 Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 6/30 (20%)

Query: 153 FGYFMCDVWNSLDVYFSSASILHLCCISVD 182
            GY  CD   + DVY         C   ++
Sbjct: 177 AGYLYCDAMEACDVYT------RQCSTLLN 200


>d1mkia_ e.3.1.2 (A:) Probable glutaminase YbgJ {Bacillus subtilis
           [TaxId: 1423]}
          Length = 328

 Score = 27.1 bits (60), Expect = 2.3
 Identities = 7/62 (11%), Positives = 21/62 (33%), Gaps = 6/62 (9%)

Query: 153 FGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAI-----VQPLDYHLIMTKSRLLIMLC 207
             +   +V  +L+VY    ++       +     I       P+ +  ++ K    +   
Sbjct: 188 TNFLEAEVEETLEVYLKQCAME-STTEDIALIGLILAHDGYHPIRHEQVIPKDVAKLAKA 246

Query: 208 IV 209
           ++
Sbjct: 247 LM 248


>d1ccwb_ c.1.19.2 (B:) Glutamate mutase, large subunit {Clostridium
           cochlearium [TaxId: 1494]}
          Length = 483

 Score = 26.3 bits (58), Expect = 4.6
 Identities = 9/28 (32%), Positives = 11/28 (39%)

Query: 49  FNYLLTEANATSGVISNDSYFPLYDYDE 76
             YL  E  A     + D+Y     YDE
Sbjct: 79  LRYLQDEGGADFLPSTIDAYTRQNRYDE 106


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.141    0.439 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,050,060
Number of extensions: 46068
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 16
Length of query: 286
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,254,276
Effective search space: 253363752
Effective search space used: 253363752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (24.5 bits)