BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3689
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 52 DSTPNMKRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYF 111
D+ +M RERKAA+ LG IM+AF+ CW+P+FI+++ + C C+ + + W GY
Sbjct: 360 DAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCCNEH--LHMFTIWLGYI 417
Query: 112 NSSLNPLIYAYFNREFRIAFKKTLQ 136
NS+LNPLIY N F+ FK+ L
Sbjct: 418 NSTLNPLIYPLCNENFKKTFKRILH 442
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 59 RERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPL 118
RE+KA + + I++ AF+ CWLPFF+ ++ ++ C C + W GY NS+LNP+
Sbjct: 395 REKKATQMVAIVLGAFIVCWLPFFLTHVLNTHC-QTCHVSPELYSATTWLGYVNSALNPV 453
Query: 119 IYAYFNREFRIAFKKTLQSC 138
IY FN EFR AF K L SC
Sbjct: 454 IYTTFNIEFRKAFLKIL-SC 472
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 21 KHLQINGITASRLDLQDTSVELEDG-IMHPISDSTPNMKRERKAARTLGIIMSAFLACWL 79
+ LQ + R +Q+ S +DG H + S+ +E KA +TLGIIM F CWL
Sbjct: 205 RQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWL 264
Query: 80 PFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPLIYAYFNREFRIAFKKTLQSCC 139
PFFI + + + + +L+ W GY NS NPLIY + +FRIAF++
Sbjct: 265 PFFIVNIVHVI--QDNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQEL----- 316
Query: 140 YALILRRSDME 150
L LRRS ++
Sbjct: 317 --LCLRRSSLK 325
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 69.7 bits (169), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 21 KHLQINGITASRLDLQDTSVELEDG-IMHPISDSTPNMKRERKAARTLGIIMSAFLACWL 79
+ LQ + R +Q+ S +DG H + S+ +E KA +TLGIIM F CWL
Sbjct: 228 RQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWL 287
Query: 80 PFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPLIYAYFNREFRIAFKKTLQSCC 139
PFFI + + + + +L+ W GY NS NPLIY + +FRIAF++
Sbjct: 288 PFFIVNIVHVI--QDNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQEL----- 339
Query: 140 YALILRRSDME 150
L LRRS ++
Sbjct: 340 --LCLRRSSLK 348
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 21 KHLQINGITASRLDLQDTSVELEDG-IMHPISDSTPNMKRERKAARTLGIIMSAFLACWL 79
+ LQ + R +Q+ S +DG H + S+ +E KA +TLGIIM F CWL
Sbjct: 229 RQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWL 288
Query: 80 PFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPLIYAYFNREFRIAFKKTLQSCC 139
PFFI + + + + +L+ W GY NS NPLIY + +FRIAF++
Sbjct: 289 PFFIVNIVHVI--QDNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQEL----- 340
Query: 140 YALILRRSDME 150
L LRRS ++
Sbjct: 341 --LCLRRSSLK 349
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 21 KHLQINGITASRLDLQDTSVELEDG-IMHPISDSTPNMKRERKAARTLGIIMSAFLACWL 79
+ LQ + R +Q+ S +DG H + S+ +E KA +TLGIIM F CWL
Sbjct: 377 RQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWL 436
Query: 80 PFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPLIYAYFNREFRIAFKKTLQSCC 139
PFFI + + + + +L+ W GY NS NPLIY + +FRIAF++
Sbjct: 437 PFFIVNIVHVI--QDNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQEL----- 488
Query: 140 YALILRRSDME 150
L LRRS ++
Sbjct: 489 --LCLRRSSLK 497
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 10/92 (10%)
Query: 59 RERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPL 118
+E KA +TLGIIM F CWLPFFI + + + + +L+ W GY NS NPL
Sbjct: 403 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI--QDNLIRKEVYILLNWIGYVNSGFNPL 460
Query: 119 IYAYFNREFRIAFKKTLQSCCYALILRRSDME 150
IY + +FRIAF++ L LRRS ++
Sbjct: 461 IYCR-SPDFRIAFQEL-------LCLRRSSLK 484
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 10/92 (10%)
Query: 59 RERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPL 118
+E KA +TLGIIM F CWLPFFI + + + + +L+ W GY NS NPL
Sbjct: 402 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI--QDNLIRKEVYILLNWIGYVNSGFNPL 459
Query: 119 IYAYFNREFRIAFKKTLQSCCYALILRRSDME 150
IY + +FRIAF++ L LRRS ++
Sbjct: 460 IYCR-SPDFRIAFQEL-------LCLRRSSLK 483
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 10/92 (10%)
Query: 59 RERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPL 118
+E KA +TLGIIM F CWLPFFI + + + + +L+ W GY NS NPL
Sbjct: 403 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI--QDNLIRKEVYILLNWIGYVNSGFNPL 460
Query: 119 IYAYFNREFRIAFKKTLQSCCYALILRRSDME 150
IY + +FRIAF++ L LRRS ++
Sbjct: 461 IYCR-SPDFRIAFQEL-------LCLRRSSLK 484
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 10/92 (10%)
Query: 59 RERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPL 118
+E KA +TLGIIM F CWLPFFI + + + + +L+ W GY NS NPL
Sbjct: 371 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI--QDNLIRKEVYILLNWIGYVNSGFNPL 428
Query: 119 IYAYFNREFRIAFKKTLQSCCYALILRRSDME 150
IY + +FRIAF++ L LRRS ++
Sbjct: 429 IYCR-SPDFRIAFQEL-------LCLRRSSLK 452
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 10/92 (10%)
Query: 59 RERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPL 118
+E KA +TLGIIM F CWLPFFI + + + + +L+ W GY NS NPL
Sbjct: 211 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI--QDNLIRKEVYILLNWIGYVNSGFNPL 268
Query: 119 IYAYFNREFRIAFKKTLQSCCYALILRRSDME 150
IY + +FRIAF++ L LRRS ++
Sbjct: 269 IYCR-SPDFRIAFQEL-------LCLRRSSLK 292
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 57 MKRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLN 116
+ RE KA +TLGIIM F CWLPFF+ + + + P + V W GY NS++N
Sbjct: 222 LMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVF--NRDLVPDWLFVAFNWLGYANSAMN 279
Query: 117 PLIYAYFNREFRIAFKKTL 135
P+IY + +FR AFK+ L
Sbjct: 280 PIIYCR-SPDFRKAFKRLL 297
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 57 MKRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLN 116
+ RE KA +TLGIIM F CWLPFF+ + + + P + V W GY NS++N
Sbjct: 224 LMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVF--NRDLVPDWLFVAFNWLGYANSAMN 281
Query: 117 PLIYAYFNREFRIAFKKTL 135
P+IY + +FR AFK+ L
Sbjct: 282 PIIYCR-SPDFRKAFKRLL 299
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 57 MKRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCS-TPRVIVVLVFWTGYFNSSL 115
+++E AA++L II+ F CWLP I + C P CS P ++ L + NS +
Sbjct: 346 LQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFC-PDCSHAPLWLMYLAIVLSHTNSVV 404
Query: 116 NPLIYAYFNREFRIAFKKTLQS 137
NP IYAY REFR F+K ++S
Sbjct: 405 NPFIYAYRIREFRQTFRKIIRS 426
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 49 PISDSTPNMKRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCS-TPRVIVVLVFW 107
P + +++E AA++L II+ F CWLP I + C P CS P ++ L
Sbjct: 217 PGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFC-PDCSHAPLWLMYLAIV 275
Query: 108 TGYFNSSLNPLIYAYFNREFRIAFKKTLQS 137
+ NS +NP IYAY REFR F+K ++S
Sbjct: 276 LSHTNSVVNPFIYAYRIREFRQTFRKIIRS 305
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 49 PISDSTPNMKRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCS-TPRVIVVLVFW 107
P + +++E AA++L II+ F CWLP I + C P CS P ++ L
Sbjct: 217 PGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFC-PDCSHAPLWLMYLAIV 275
Query: 108 TGYFNSSLNPLIYAYFNREFRIAFKKTLQS 137
+ NS +NP IYAY REFR F+K ++S
Sbjct: 276 LSHTNSVVNPFIYAYRIREFRQTFRKIIRS 305
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 57 MKRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCS-TPRVIVVLVFWTGYFNSSL 115
+++E AA++L II+ F CWLP I + C P CS P ++ L + NS +
Sbjct: 387 LQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFC-PDCSHAPLWLMYLAIVLSHTNSVV 445
Query: 116 NPLIYAYFNREFRIAFKKTLQS 137
NP IYAY REFR F+K ++S
Sbjct: 446 NPFIYAYRIREFRQTFRKIIRS 467
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 59 RERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPL 118
+E+KAA+TL I+ AF+ W P+ I L ++ C P+ L +W Y NS++NP+
Sbjct: 368 KEKKAAQTLSAILLAFIITWTPYNIMVLVNTFC--DSCIPKTYWNLGYWLCYINSTVNPV 425
Query: 119 IYAYFNREFRIAFKKTLQSCC 139
YA N+ FR FK L C
Sbjct: 426 CYALCNKTFRTTFKTLLLCQC 446
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 52 DSTPNMKRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYF 111
D+ P RE+K RT+ I+ AF+ W P+ + L ++ C P P + + +W Y
Sbjct: 375 DAYPPPSREKKVTRTILAILLAFIITWAPYNVMVLINTFCAP--CIPNTVWTIGYWLCYI 432
Query: 112 NSSLNPLIYAYFNREFRIAFKKTLQSCCY 140
NS++NP YA N F+ FK L C Y
Sbjct: 433 NSTINPACYALCNATFKKTFKHLLM-CHY 460
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 49 PISDSTPNMKRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCS-TPRVIVVLVFW 107
P + +++E AA++ II F CWLP I + C P CS P ++ L
Sbjct: 217 PGERARSTLQKEVHAAKSAAIIAGLFALCWLPLHIINCFTFFC-PDCSHAPLWLMYLAIV 275
Query: 108 TGYFNSSLNPLIYAYFNREFRIAFKKTLQS 137
+ NS +NP IYAY REFR F+K ++S
Sbjct: 276 LAHTNSVVNPFIYAYRIREFRQTFRKIIRS 305
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 50 ISDSTPNMKRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWT- 108
+S S + R+ R + ++++ F+ CW P ++ L L G + S+ + +L F T
Sbjct: 322 LSGSREKDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGL-GVQPSSETAVAILRFCTA 380
Query: 109 -GYFNSSLNPLIYAYFNREFRIAFKKTLQSCCYALILR 145
GY NS LNP++YA+ + F+ F+K CC + + R
Sbjct: 381 LGYVNSCLNPILYAFLDENFKACFRKF---CCASALGR 415
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Query: 65 RTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYF------NSSLNPL 118
+T+ I++S F+ACW P FI L C K ++F YF NS NP+
Sbjct: 421 KTVIIVLSVFIACWAPLFILLLLDVGCKVKTCD------ILFRAEYFLVLAVLNSGTNPI 474
Query: 119 IYAYFNREFRIAFKKTL 135
IY N+E R AF + +
Sbjct: 475 IYTLTNKEMRRAFIRIM 491
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 59 RERKAARTLGIIMSAFLACWLPFFIW-----YLGSSLCGPKCSTPRVIVVLVFWT---GY 110
++RKA +T I++ AF ACWLP++I ++ + C + + T +
Sbjct: 407 QKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAF 466
Query: 111 FNSSLNPLIYAYFNREFRIAFKKTLQS 137
F+ LNP++YA+ +F+ + + L S
Sbjct: 467 FHCCLNPILYAFLGAKFKTSAQHALTS 493
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 59 RERKAARTLGIIMSAFLACWLPFFIW-----YLGSSLCGPKCSTPRVIVVLVFWT---GY 110
++RKA +T I++ AF ACWLP++I ++ + C + + T +
Sbjct: 407 QKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAF 466
Query: 111 FNSSLNPLIYAYFNREFRIAFKKTLQS 137
F+ LNP++YA+ +F+ + + L S
Sbjct: 467 FHCCLNPILYAFLGAKFKTSAQHALTS 493
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 10/89 (11%)
Query: 56 NMKRERKAARTLGIIMSAFLACWLPFFIWYLGSSL---------CGPKCSTPRVIVVLVF 106
+M ++ +A R + ++ FL CWLP+ + L +L C + + R +
Sbjct: 205 HMGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEI 264
Query: 107 WTGYFNSSLNPLIYAYFNREFRIAFKKTL 135
G+ +S LNP+IYA+ + FR F K L
Sbjct: 265 -LGFLHSCLNPIIYAFIGQNFRHGFLKIL 292
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 52 DSTPNMKRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVL--VFWTG 109
D+ + R+ R + +++ AF+ CW P I+ + +L P V+ L G
Sbjct: 367 DAYEKDRSLRRITRMVLVVVGAFVVCWAPIHIFVIVWTLVDINRRDPLVVAALHLCIALG 426
Query: 110 YFNSSLNPLIYAYFNREFRIAFKKTLQSCC 139
Y NSSLNP++YA+ + F+ F++ ++ C
Sbjct: 427 YANSSLNPVLYAFLDENFKRCFRQLCRTPC 456
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 51 SDSTPNMKRERKAARTLGIIMSAFLACWLP-----FFIWYLGSSLCGPKCSTPRVIVVLV 105
+S K E++ R + I++ AFL CWLP F+I+ S GP + + +
Sbjct: 239 QESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGP------IFMTIP 292
Query: 106 FWTGYFNSSLNPLIYAYFNREFRIAFKKTLQSCC 139
+ ++ NP+IY N++FR TL CC
Sbjct: 293 AFFAKTSAVYNPVIYIMMNKQFRNCMVTTL--CC 324
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 51 SDSTPNMKRERKAARTLGIIMSAFLACWLP-----FFIWYLGSSLCGPKCSTPRVIVVLV 105
+S K E++ R + I++ AFL CWLP F+I+ S GP + + +
Sbjct: 239 QESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGP------IFMTIP 292
Query: 106 FWTGYFNSSLNPLIYAYFNREFRIAFKKTLQSCC 139
+ ++ NP+IY N++FR TL CC
Sbjct: 293 AFFAKTSAVYNPVIYIMMNKQFRNCMVTTL--CC 324
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 51 SDSTPNMKRERKAARTLGIIMSAFLACWLP-----FFIWYLGSSLCGPKCSTPRVIVVLV 105
+S K E++ R + I++ AFL CWLP F+I+ S GP + + +
Sbjct: 238 QESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGP------IFMTIP 291
Query: 106 FWTGYFNSSLNPLIYAYFNREFRIAFKKTLQSCC 139
+ ++ NP+IY N++FR TL CC
Sbjct: 292 AFFAKTSAVYNPVIYIMMNKQFRNCMVTTL--CC 323
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 59 RERKAARTLGIIMSAFLACWLPFFIW-----YLGSSLCGPKCSTPRVIVVLVFWT---GY 110
++RKA + I++ AF ACWLP++I ++ + C + + T +
Sbjct: 404 QKRKALKPTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAF 463
Query: 111 FNSSLNPLIYAYFNREFRIAFKKTLQS 137
F+ LNP++YA+ +F+ + + L S
Sbjct: 464 FHCCLNPILYAFLGAKFKTSAQHALTS 490
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 51 SDSTPNMKRERKAARTLGIIMSAFLACWLP-----FFIWYLGSSLCGPKCSTPRVIVVLV 105
+S K E++ R + I++ AFL CWLP F+I+ S GP + + +
Sbjct: 239 QESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGP------IFMTIP 292
Query: 106 FWTGYFNSSLNPLIYAYFNREFRIAFKKTLQSCC 139
+ ++ NP+IY N++FR TL CC
Sbjct: 293 AFFAKTSAVYNPVIYIMMNKQFRNCMVTTL--CC 324
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 51 SDSTPNMKRERKAARTLGIIMSAFLACWLP-----FFIWYLGSSLCGPKCSTPRVIVVLV 105
+S K E++ R + I++ AFL CWLP F+I+ S GP + + +
Sbjct: 238 QESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGP------IFMTIP 291
Query: 106 FWTGYFNSSLNPLIYAYFNREFRIAFKKTLQSCC 139
+ ++ NP+IY N++FR TL CC
Sbjct: 292 AFFAKTSAVYNPVIYIMMNKQFRNCMVTTL--CC 323
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 61 RKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVI-VVLVFWTGYFNSSLNPLI 119
R+ R + ++++ F+ CW P I+ L +L ST + GY NSSLNP++
Sbjct: 392 RRITRLVLVVVAVFVVCWTPIHIFILVEALGSTSHSTAALSSYYFCIALGYTNSSLNPIL 451
Query: 120 YAYFNREFRIAFKKTLQSCCYALILR 145
YA+ + FK+ + C+ L +R
Sbjct: 452 YAFLDEN----FKRCFRDFCFPLKMR 473
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Query: 51 SDSTPNMKRERKAARTLGIIMSAFLACWLP-----FFIWYLGSSLCGPKCSTPRVIVVLV 105
+S K E++ R + I + AFL CWLP F+I+ S GP + + +
Sbjct: 239 QESATTQKAEKEVTRMVIIYVIAFLICWLPYAGVAFYIFTHQGSCFGP------IFMTIP 292
Query: 106 FWTGYFNSSLNPLIYAYFNREFRIAFKKTLQSCC 139
+ ++ NP+IY N++FR TL CC
Sbjct: 293 AFFAKTSAVYNPVIYIMMNKQFRNCMVTTL--CC 324
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 74 FLACWLPFFIWYLGSSLCGPKCSTPRVI---VVLVFWTGYFNSSLNPLIYAYFNREFRIA 130
F CWLPF I++L + P + I + + W ++ NP+IY N FR+
Sbjct: 257 FAICWLPFHIFFLLPYI-NPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLG 315
Query: 131 FKKTLQSC 138
FK + C
Sbjct: 316 FKHAFRCC 323
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 52 DSTPNMKRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWT--- 108
D+ + R+ R + ++++ F+ CW P I+ + +L + P V W
Sbjct: 370 DAYEKDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALI----TIPETTFQTVSWHFCI 425
Query: 109 --GYFNSSLNPLIYAYFNREFRIAFKK 133
GY NS LNP++YA+ + F+ F++
Sbjct: 426 ALGYTNSCLNPVLYAFLDENFKRCFRE 452
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 70 IMSAFLACWLPFFIWYLGSSLCGPKCSTP------RVIVVLVFWTGYFNSSLNPLIYAYF 123
++ AF+ CWLP+ + L + T +L Y +S++NP++Y
Sbjct: 414 VVIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLV 473
Query: 124 NREFRIAFKKTLQSCCYALILRR 146
+ FR F TL C RR
Sbjct: 474 SANFRQVFLSTLACLCPGWRHRR 496
>pdb|2KOE|A Chain A, Human Cannabinoid Receptor 1 - Helix 78 PEPTIDE
Length = 40
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 112 NSSLNPLIYAYFNREFRIAFKKTLQS 137
NS++NP+IYA +++ R AF+ S
Sbjct: 13 NSTVNPIIYALRSKDLRHAFRSMFPS 38
>pdb|4FIU|A Chain A, The Structure Of Hemagglutinin Of H16 Subtype Influenza
Virus With V327g Mutation
pdb|4FIU|B Chain B, The Structure Of Hemagglutinin Of H16 Subtype Influenza
Virus With V327g Mutation
pdb|4FIU|C Chain C, The Structure Of Hemagglutinin Of H16 Subtype Influenza
Virus With V327g Mutation
Length = 515
Score = 26.6 bits (57), Expect = 5.4, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 9/56 (16%)
Query: 1 MIILIDSDVTLSRVAAALLNKHLQINGITASRLDLQDTSVELEDG---IMHPISDS 53
+++LI++D TL A + N H QI + L+D +++ DG I+H +DS
Sbjct: 432 LLVLIENDRTLDLHDANVRNLHEQI------KRALKDNAIDEGDGCFSILHKCNDS 481
>pdb|4F23|A Chain A, Influenza A Virus Hemagglutinin H16 Ha0 Structure With An
Alpha-Helix Conformation In The Cleavage Site: A
Potential Drug Target
pdb|4F23|B Chain B, Influenza A Virus Hemagglutinin H16 Ha0 Structure With An
Alpha-Helix Conformation In The Cleavage Site: A
Potential Drug Target
pdb|4F23|C Chain C, Influenza A Virus Hemagglutinin H16 Ha0 Structure With An
Alpha-Helix Conformation In The Cleavage Site: A
Potential Drug Target
Length = 515
Score = 26.6 bits (57), Expect = 5.4, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 9/56 (16%)
Query: 1 MIILIDSDVTLSRVAAALLNKHLQINGITASRLDLQDTSVELEDG---IMHPISDS 53
+++LI++D TL A + N H QI + L+D +++ DG I+H +DS
Sbjct: 432 LLVLIENDRTLDLHDANVRNLHEQI------KRALKDNAIDEGDGCFSILHKCNDS 481
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 60 ERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPLI 119
E + A+ +I+S FL W P+ + L + + TP + V + ++ NP+I
Sbjct: 255 EMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVMFAKA-SAIHNPMI 313
Query: 120 YAYFNREFRIAFKKTLQ---SCC 139
Y+ + +FR A +T +CC
Sbjct: 314 YSVSHPKFREAISQTFPWVLTCC 336
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 60 ERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPLI 119
E + A+ +I+S FL W P+ + L + + TP + V + ++ NP+I
Sbjct: 256 EMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVMFAKA-SAIHNPMI 314
Query: 120 YAYFNREFRIAFKKTLQ---SCC 139
Y+ + +FR A +T +CC
Sbjct: 315 YSVSHPKFREAISQTFPWVLTCC 337
>pdb|2KI9|A Chain A, Human Cannabinoid Receptor-2 Helix 6
Length = 33
Score = 26.2 bits (56), Expect = 7.0, Method: Composition-based stats.
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 62 KAARTLGIIMSAFLACWLP 80
+ A+TLG++++ L CW P
Sbjct: 3 RLAKTLGLVLAVLLICWFP 21
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.139 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,850,578
Number of Sequences: 62578
Number of extensions: 133680
Number of successful extensions: 360
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 47
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.7 bits)