Query psy3689
Match_columns 151
No_of_seqs 142 out of 1570
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 23:04:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 99.7 5.8E-18 1.3E-22 129.5 6.4 87 53-139 249-337 (423)
2 PHA03234 DNA packaging protein 99.7 2.1E-17 4.6E-22 127.1 9.4 80 58-137 230-316 (338)
3 KOG4220|consensus 99.7 6.3E-18 1.4E-22 129.6 2.9 85 57-143 409-493 (503)
4 PHA02834 chemokine receptor-li 99.7 8.9E-17 1.9E-21 122.9 5.9 82 60-141 224-313 (323)
5 PHA03235 DNA packaging protein 99.6 6.2E-16 1.3E-20 121.7 8.1 79 60-138 239-324 (409)
6 PHA02638 CC chemokine receptor 99.6 2.1E-14 4.6E-19 113.3 9.2 81 59-139 307-399 (417)
7 PHA03087 G protein-coupled che 99.5 1.5E-13 3.2E-18 105.3 9.6 84 58-141 237-327 (335)
8 PF00001 7tm_1: 7 transmembran 99.2 8.7E-11 1.9E-15 85.1 8.8 67 54-120 191-257 (257)
9 PF10324 7TM_GPCR_Srw: Serpent 98.7 6.2E-08 1.3E-12 73.9 8.1 79 58-136 235-316 (318)
10 PF10320 7TM_GPCR_Srsx: Serpen 98.2 2.5E-06 5.4E-11 63.5 4.8 78 58-135 180-257 (257)
11 KOG2087|consensus 98.0 1.2E-07 2.5E-12 72.6 -6.0 77 61-138 231-307 (363)
12 PF11970 Git3_C: G protein-cou 97.5 0.00065 1.4E-08 41.2 6.5 70 56-126 3-73 (76)
13 PF05296 TAS2R: Mammalian tast 97.5 0.0021 4.6E-08 49.1 10.4 79 53-136 222-300 (303)
14 PF10321 7TM_GPCR_Srt: Serpent 97.3 0.00065 1.4E-08 52.1 5.4 73 56-136 234-306 (313)
15 PF10323 7TM_GPCR_Srv: Serpent 97.1 0.004 8.6E-08 47.1 8.5 82 53-136 201-282 (283)
16 PF05462 Dicty_CAR: Slime mold 96.5 0.065 1.4E-06 41.0 10.9 67 67-137 204-270 (303)
17 PF10328 7TM_GPCR_Srx: Serpent 96.4 0.013 2.9E-07 43.8 6.4 77 52-135 197-273 (274)
18 PF10317 7TM_GPCR_Srd: Serpent 96.1 0.04 8.7E-07 41.7 7.7 75 56-133 218-292 (292)
19 PF03402 V1R: Vomeronasal orga 95.3 0.016 3.6E-07 43.4 2.9 70 58-131 194-263 (265)
20 PF02101 Ocular_alb: Ocular al 94.4 0.26 5.5E-06 38.8 7.2 22 67-88 246-267 (405)
21 PF10327 7TM_GPCR_Sri: Serpent 93.0 0.36 7.8E-06 36.9 6.1 72 56-130 231-302 (303)
22 PF10318 7TM_GPCR_Srh: Serpent 92.9 0.74 1.6E-05 34.8 7.7 80 53-136 221-301 (302)
23 KOG4564|consensus 89.0 0.69 1.5E-05 37.6 4.3 73 59-138 348-420 (473)
24 KOG4193|consensus 86.8 12 0.00026 31.7 10.3 67 62-136 514-580 (610)
25 PF10319 7TM_GPCR_Srj: Serpent 86.8 2.7 5.9E-05 32.3 6.1 74 54-130 235-309 (310)
26 PF10326 7TM_GPCR_Str: Serpent 85.1 0.15 3.4E-06 38.6 -1.3 73 56-132 234-307 (307)
27 KOG2575|consensus 81.2 2.1 4.6E-05 34.2 3.5 26 59-84 253-278 (510)
28 PF02118 Srg: Srg family chemo 74.1 32 0.0007 25.3 8.1 71 58-130 204-274 (275)
29 PF03125 Sre: C. elegans Sre G 70.6 50 0.0011 25.9 11.3 39 99-137 283-321 (365)
30 KOG3827|consensus 67.1 2.5 5.4E-05 33.4 0.7 33 60-92 59-91 (400)
31 PF09889 DUF2116: Uncharacteri 63.2 17 0.00037 20.8 3.5 22 58-79 33-54 (59)
32 PF04238 DUF420: Protein of un 61.5 47 0.001 22.3 6.7 38 56-93 30-67 (133)
33 PF10292 7TM_GPCR_Srab: Serpen 55.4 93 0.002 23.9 10.4 83 55-137 223-306 (324)
34 PF03155 Alg6_Alg8: ALG6, ALG8 50.6 31 0.00068 28.3 4.4 26 58-83 218-243 (469)
35 PF06072 Herpes_US9: Alphaherp 48.9 48 0.001 19.0 3.7 31 56-86 24-55 (60)
36 COG2322 Predicted membrane pro 48.3 94 0.002 21.8 6.3 37 56-92 71-107 (177)
37 PF05393 Hum_adeno_E3A: Human 38.4 45 0.00097 20.7 2.7 14 66-79 43-56 (94)
38 PHA02849 putative transmembran 36.0 94 0.002 18.8 3.8 23 66-88 17-39 (82)
39 PF15188 CCDC-167: Coiled-coil 34.0 36 0.00078 21.0 1.9 19 63-81 66-84 (85)
40 COG1823 Predicted Na+/dicarbox 33.0 1.8E+02 0.0039 23.5 5.9 33 59-91 217-249 (458)
41 TIGR02230 ATPase_gene1 F0F1-AT 32.6 1.1E+02 0.0025 19.4 4.0 40 79-118 54-93 (100)
42 PF13071 DUF3935: Protein of u 32.4 1E+02 0.0023 17.7 3.8 27 64-90 4-30 (68)
43 PF11014 DUF2852: Protein of u 30.0 87 0.0019 20.5 3.2 24 66-90 11-34 (115)
44 PF04789 DUF621: Protein of un 29.6 1.4E+02 0.003 23.0 4.6 70 60-133 225-294 (305)
45 KOG1726|consensus 28.4 2.4E+02 0.0052 20.9 5.6 18 66-83 46-63 (225)
46 PF10445 DUF2456: Protein of u 27.9 1.3E+02 0.0029 18.9 3.7 27 60-86 26-52 (94)
47 PF04505 Dispanin: Interferon- 27.7 45 0.00097 20.3 1.6 17 74-90 26-42 (82)
48 PRK13735 conjugal transfer mat 27.6 2.6E+02 0.0056 25.4 6.6 28 61-88 322-349 (942)
49 COG5058 LAG1 Protein transport 27.6 2.4E+02 0.0053 22.2 5.7 61 64-124 234-295 (395)
50 PHA02657 hypothetical protein; 26.4 1.5E+02 0.0032 18.4 3.6 25 64-88 25-49 (95)
51 TIGR00934 2a38euk potassium up 26.1 3.9E+02 0.0085 23.8 7.2 31 60-90 444-474 (800)
52 PF07330 DUF1467: Protein of u 25.4 1.7E+02 0.0037 18.0 5.4 29 53-81 43-71 (85)
53 COG1687 AzlD Predicted branche 25.2 1.2E+02 0.0027 19.5 3.2 24 63-86 6-29 (106)
54 PF14257 DUF4349: Domain of un 24.5 1.2E+02 0.0026 22.5 3.6 17 70-86 238-254 (262)
55 PF15108 TMEM37: Voltage-depen 23.9 2.1E+02 0.0045 20.0 4.3 16 99-114 158-173 (184)
56 PF11298 DUF3099: Protein of u 23.4 1.8E+02 0.0038 17.4 3.5 28 56-83 13-40 (73)
57 PF06196 DUF997: Protein of un 23.3 1.8E+02 0.004 17.6 4.5 20 62-81 5-24 (80)
58 COG3821 Predicted membrane pro 22.9 72 0.0016 23.2 2.0 18 69-86 8-25 (234)
59 KOG4686|consensus 22.0 2.6E+02 0.0057 22.1 5.0 28 60-87 262-289 (459)
60 PRK01100 putative accessory ge 21.8 3.1E+02 0.0068 19.7 6.8 16 114-129 186-201 (210)
61 TIGR01912 TatC-Arch Twin argin 20.8 3.1E+02 0.0068 20.2 5.2 29 58-86 8-36 (237)
62 PF10624 TraS: Plasmid conjuga 20.1 99 0.0021 20.9 2.1 16 71-86 31-46 (164)
No 1
>KOG4219|consensus
Probab=99.73 E-value=5.8e-18 Score=129.45 Aligned_cols=87 Identities=23% Similarity=0.616 Sum_probs=73.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCC--CCcHHHHHHHHHHHHHHhhhhhHHHhhhccHHHHHH
Q psy3689 53 STPNMKRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPK--CSTPRVIVVLVFWTGYFNSSLNPLIYAYFNREFRIA 130 (151)
Q Consensus 53 ~~~~~~~~~k~~~~~~~iv~~f~vcw~P~~i~~~~~~~~~~~--~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~ 130 (151)
..+..+.++|++||++++++.|.+||+||++..++....++- ......++....||+.+|+|+||+||+++|++||.+
T Consensus 249 ~~~~~kak~K~vkmliiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~g 328 (423)
T KOG4219|consen 249 KHEQLKAKKKVVKMLIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGG 328 (423)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHH
Confidence 445667889999999999999999999999999987654431 123455788899999999999999999999999999
Q ss_pred HHHHHHHhh
Q psy3689 131 FKKTLQSCC 139 (151)
Q Consensus 131 ~~~~~~~~~ 139 (151)
+++.|++|-
T Consensus 329 f~~~fr~cp 337 (423)
T KOG4219|consen 329 FRRAFRWCP 337 (423)
T ss_pred Hhhhhheee
Confidence 999998763
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.73 E-value=2.1e-17 Score=127.13 Aligned_cols=80 Identities=20% Similarity=0.375 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcC----CCCCc---HHHHHHHHHHHHHHhhhhhHHHhhhccHHHHHH
Q psy3689 58 KRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCG----PKCST---PRVIVVLVFWTGYFNSSLNPLIYAYFNREFRIA 130 (151)
Q Consensus 58 ~~~~k~~~~~~~iv~~f~vcw~P~~i~~~~~~~~~----~~~~~---~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~ 130 (151)
++++|+++++++++++|++||+||+++.++..+.. .++.. ....+.++.+++++|||+||+||++.+++||++
T Consensus 230 ~~~~k~~k~i~~vv~vF~iCWlPy~iv~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~ 309 (338)
T PHA03234 230 KKHKKTLFFIRILILSFLCIQIPNIAILICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLR 309 (338)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHH
Confidence 34689999999999999999999999877654321 11211 123467888899999999999999999999999
Q ss_pred HHHHHHH
Q psy3689 131 FKKTLQS 137 (151)
Q Consensus 131 ~~~~~~~ 137 (151)
++++++.
T Consensus 310 ~~~~~~~ 316 (338)
T PHA03234 310 FTACFQD 316 (338)
T ss_pred HHHHHHH
Confidence 9988864
No 3
>KOG4220|consensus
Probab=99.70 E-value=6.3e-18 Score=129.61 Aligned_cols=85 Identities=38% Similarity=0.657 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCCCcHHHHHHHHHHHHHHhhhhhHHHhhhccHHHHHHHHHHHH
Q psy3689 57 MKRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPLIYAYFNREFRIAFKKTLQ 136 (151)
Q Consensus 57 ~~~~~k~~~~~~~iv~~f~vcw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~ 136 (151)
..+|+|+++++.+|+++|++||+||.++.++..|+.. -.+..++.+..||.|+||.+||++|++.|+.||+.|++++.
T Consensus 409 ~~rErKAAkTLsAILlAFIiTWtPYNImVlv~tFC~~--CiP~tlW~~gYwLCYINSTiNP~CYALCNatFrkTfk~lL~ 486 (503)
T KOG4220|consen 409 LVRERKAAKTLSAILLAFILTWTPYNIMVLVNTFCKN--CIPETLWTFGYWLCYINSTINPLCYALCNATFRKTFKRLLL 486 (503)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcccceeeeehHhhccc--ccchhHhhhhhheeeecccccHHHHHHHhHHHHHHHHHhhe
Confidence 3678999999999999999999999999999999876 44667889999999999999999999999999999999996
Q ss_pred Hhhcccc
Q psy3689 137 SCCYALI 143 (151)
Q Consensus 137 ~~~~~~~ 143 (151)
|.++.++
T Consensus 487 Cr~~~~~ 493 (503)
T KOG4220|consen 487 CRWKKRR 493 (503)
T ss_pred eeecccc
Confidence 5554444
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.67 E-value=8.9e-17 Score=122.94 Aligned_cols=82 Identities=18% Similarity=0.412 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCC-----CCc-HH--HHHHHHHHHHHHhhhhhHHHhhhccHHHHHHH
Q psy3689 60 ERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPK-----CST-PR--VIVVLVFWTGYFNSSLNPLIYAYFNREFRIAF 131 (151)
Q Consensus 60 ~~k~~~~~~~iv~~f~vcw~P~~i~~~~~~~~~~~-----~~~-~~--~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~ 131 (151)
++|.+|++++++++|++||+||+++.++..+.+.+ +.. .. ....++.+++++|||+||+||++++++||+++
T Consensus 224 ~~k~~k~~~~vv~~F~icWlPy~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~~ 303 (323)
T PHA02834 224 KTRSIKIILTVVTFTVVFWVPFNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKVF 303 (323)
T ss_pred cceEEeehhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHHhcHHHHHHH
Confidence 45788999999999999999999988876553211 111 11 12457778999999999999999999999999
Q ss_pred HHHHHHhhcc
Q psy3689 132 KKTLQSCCYA 141 (151)
Q Consensus 132 ~~~~~~~~~~ 141 (151)
+++++++++.
T Consensus 304 ~~~~~~~~~~ 313 (323)
T PHA02834 304 KNMFCRTNNI 313 (323)
T ss_pred HHHHHhhhhh
Confidence 9999655543
No 5
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.64 E-value=6.2e-16 Score=121.69 Aligned_cols=79 Identities=19% Similarity=0.373 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCC----CCC---cHHHHHHHHHHHHHHhhhhhHHHhhhccHHHHHHHH
Q psy3689 60 ERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGP----KCS---TPRVIVVLVFWTGYFNSSLNPLIYAYFNREFRIAFK 132 (151)
Q Consensus 60 ~~k~~~~~~~iv~~f~vcw~P~~i~~~~~~~~~~----~~~---~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~ 132 (151)
++|.++++++++++|++||+||+++.++..+... ++. .......++.+++++|||+||+||++++++||+.++
T Consensus 239 ~~k~~~~v~iivv~F~iCWlPy~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~~ 318 (409)
T PHA03235 239 RSRTLTFVCILLLSFLCLQTPFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKRFR 318 (409)
T ss_pred chhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHHH
Confidence 4577889999999999999999998887644221 111 123456788889999999999999999999999999
Q ss_pred HHHHHh
Q psy3689 133 KTLQSC 138 (151)
Q Consensus 133 ~~~~~~ 138 (151)
+.++++
T Consensus 319 ~~l~~~ 324 (409)
T PHA03235 319 QCFRGE 324 (409)
T ss_pred HHHhhh
Confidence 999764
No 6
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.55 E-value=2.1e-14 Score=113.34 Aligned_cols=81 Identities=22% Similarity=0.413 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCC----------CCCcH--HHHHHHHHHHHHHhhhhhHHHhhhccHH
Q psy3689 59 RERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGP----------KCSTP--RVIVVLVFWTGYFNSSLNPLIYAYFNRE 126 (151)
Q Consensus 59 ~~~k~~~~~~~iv~~f~vcw~P~~i~~~~~~~~~~----------~~~~~--~~~~~~~~~l~~~ns~~NPiiY~~~~~~ 126 (151)
+++|.++++++++++|++||+||.++.++..+... ++... .....++..++++|||+||++|++.+++
T Consensus 307 ~k~k~~rli~~ivi~f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~~c~~~~l~~~~~vt~~la~~~sclNPiIY~f~~~~ 386 (417)
T PHA02638 307 KKTKSIIIVSIIIICSLICWIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPLIYTLIGEN 386 (417)
T ss_pred ccchhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCHH
Confidence 35788999999999999999999998887755311 11111 2345677789999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy3689 127 FRIAFKKTLQSCC 139 (151)
Q Consensus 127 fR~~~~~~~~~~~ 139 (151)
||+++++++++..
T Consensus 387 FR~~l~~~~~~~~ 399 (417)
T PHA02638 387 FRMHLLMIFRNIF 399 (417)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999886543
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.50 E-value=1.5e-13 Score=105.32 Aligned_cols=84 Identities=27% Similarity=0.402 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhc----CCCCC---cHHHHHHHHHHHHHHhhhhhHHHhhhccHHHHHH
Q psy3689 58 KRERKAARTLGIIMSAFLACWLPFFIWYLGSSLC----GPKCS---TPRVIVVLVFWTGYFNSSLNPLIYAYFNREFRIA 130 (151)
Q Consensus 58 ~~~~k~~~~~~~iv~~f~vcw~P~~i~~~~~~~~----~~~~~---~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~ 130 (151)
++++|+.|++.+++++|++||+||++..++..+. .+... .......++.+++.+|+++||+||++++++||++
T Consensus 237 ~~~~k~~k~l~~iv~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~ 316 (335)
T PHA03087 237 KKNKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKH 316 (335)
T ss_pred hhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHH
Confidence 3467889999999999999999999877665331 11111 1223445677889999999999999999999999
Q ss_pred HHHHHHHhhcc
Q psy3689 131 FKKTLQSCCYA 141 (151)
Q Consensus 131 ~~~~~~~~~~~ 141 (151)
+++.++....+
T Consensus 317 ~~~~~~~~~~~ 327 (335)
T PHA03087 317 KKKSLKLMFTS 327 (335)
T ss_pred HHHHHHHHhhc
Confidence 99999654433
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.21 E-value=8.7e-11 Score=85.06 Aligned_cols=67 Identities=40% Similarity=0.762 Sum_probs=57.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCCCcHHHHHHHHHHHHHHhhhhhHHHh
Q psy3689 54 TPNMKRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPLIY 120 (151)
Q Consensus 54 ~~~~~~~~k~~~~~~~iv~~f~vcw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY 120 (151)
+...++++|.++++++++++|++||+|+.+..++..+.+...........++.++.++||++||+||
T Consensus 191 ~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~nP~iY 257 (257)
T PF00001_consen 191 RRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSVFSPSSSLISSILFYISYFLAFLNSCLNPIIY 257 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTSTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccCCceeHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhhCcEEC
Confidence 3455678999999999999999999999999998888765311567788899999999999999999
No 9
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=98.72 E-value=6.2e-08 Score=73.86 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCC---CcHHHHHHHHHHHHHHhhhhhHHHhhhccHHHHHHHHHH
Q psy3689 58 KRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKC---STPRVIVVLVFWTGYFNSSLNPLIYAYFNREFRIAFKKT 134 (151)
Q Consensus 58 ~~~~k~~~~~~~iv~~f~vcw~P~~i~~~~~~~~~~~~---~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~ 134 (151)
.++.+.+++++.+++.|+++-+|+.+..++..+..++. ........+...+..+|++.|++||++++.+||+.++++
T Consensus 235 ~~~~~tt~li~~~ti~f~i~e~p~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~~ 314 (318)
T PF10324_consen 235 KKSDRTTKLILFMTISFLISELPQGIIFLLESFFEEDSGLIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRKTVKKL 314 (318)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHH
Confidence 45678899999999999999999999999987644322 122335667778889999999999999999999999999
Q ss_pred HH
Q psy3689 135 LQ 136 (151)
Q Consensus 135 ~~ 136 (151)
++
T Consensus 315 f~ 316 (318)
T PF10324_consen 315 FG 316 (318)
T ss_pred hc
Confidence 94
No 10
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=98.18 E-value=2.5e-06 Score=63.49 Aligned_cols=78 Identities=22% Similarity=0.262 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCCCcHHHHHHHHHHHHHHhhhhhHHHhhhccHHHHHHHHHHH
Q psy3689 58 KRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPLIYAYFNREFRIAFKKTL 135 (151)
Q Consensus 58 ~~~~k~~~~~~~iv~~f~vcw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~ 135 (151)
..++|..|.+.+.++.|+..|.-..+...+....+.+.+....+.....++..+|.+.|.++|.+.++|||+++++++
T Consensus 180 ~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~~~~~~~~~i~~~~~i~v~~~~s~~ffV~~~~S~EYR~af~~~~ 257 (257)
T PF10320_consen 180 SRSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALGLDGETIAIIQMYAGIFVNISYSQNFFVYYWRSSEYRKAFRELF 257 (257)
T ss_pred hhHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHheEEEEcCHHHHHHHHHhC
Confidence 446889999999999999999998887776655444233334456677788899999999999999999999999864
No 11
>KOG2087|consensus
Probab=97.97 E-value=1.2e-07 Score=72.56 Aligned_cols=77 Identities=19% Similarity=0.345 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCCCcHHHHHHHHHHHHHHhhhhhHHHhhhccHHHHHHHHHHHHHh
Q psy3689 61 RKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPLIYAYFNREFRIAFKKTLQSC 138 (151)
Q Consensus 61 ~k~~~~~~~iv~~f~vcw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~ 138 (151)
...++-+..++.+=++||.|.+++.+...+..+ .........+..++.-+|||+||++|+++++.||+.++.++.++
T Consensus 231 ~~~akr~a~LvfTd~icw~Pi~f~~~~al~~~~-li~~~~sk~llv~flPlns~~NP~LYa~fT~~fk~d~~~l~~k~ 307 (363)
T KOG2087|consen 231 TSVAKRMAFLVFTDCICWCPIAFFKFSALIGVE-LISVSYSKWLLVFFLPLNSCLNPFLYAFFTPVFKEDLFLLLSKV 307 (363)
T ss_pred hhhhhCeeEEEEccccccCchheeeeHHhcCCc-ccChhhceeEEEEEEEcccccCchhHHHcCHHHHHHHHHHHhhc
Confidence 355666667888889999999998888776554 12122222333444579999999999999999999999998753
No 12
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=97.52 E-value=0.00065 Score=41.19 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHhhcCCCCCcHHHHHHHHHHHHHHhhhhhHHHhhhccHH
Q psy3689 56 NMKRERKAARTLGIIMSAFLACWL-PFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPLIYAYFNRE 126 (151)
Q Consensus 56 ~~~~~~k~~~~~~~iv~~f~vcw~-P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~ 126 (151)
+.++-+|.++.+++==++|+++|+ |+....+..... .+.....+...++.++..+|+.+|-++|++.-+.
T Consensus 3 ~r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~-~~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~erp 73 (76)
T PF11970_consen 3 RRKRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYE-IGHGPSFWLFCIAGFMQPSQGFVDCLVFTLRERP 73 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCchHHHHHHHHHHHccCHHHhhheeeeccc
Confidence 344557888999999999999999 877655554422 2245567788888888899999999999987654
No 13
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=97.47 E-value=0.0021 Score=49.05 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=57.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCCCcHHHHHHHHHHHHHHhhhhhHHHhhhccHHHHHHHH
Q psy3689 53 STPNMKRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPLIYAYFNREFRIAFK 132 (151)
Q Consensus 53 ~~~~~~~~~k~~~~~~~iv~~f~vcw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~ 132 (151)
++.+.++..|++|+++.-++.|+++++-..+......+ ........+...+.++.|...|+|-.+.|+++|++++
T Consensus 222 ~~ps~~aH~~a~k~~~sfl~ly~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~yps~hs~iLIlgn~KLr~~~~ 296 (303)
T PF05296_consen 222 RDPSTEAHIRAIKTMISFLILYIIYFLSLILSFLSFFF-----PENSIWFWVCEIIIALYPSGHSIILILGNPKLRQALL 296 (303)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 34456778999999888777777766554432222211 1223455677778889999999999999999999999
Q ss_pred HHHH
Q psy3689 133 KTLQ 136 (151)
Q Consensus 133 ~~~~ 136 (151)
++++
T Consensus 297 ~il~ 300 (303)
T PF05296_consen 297 KILW 300 (303)
T ss_pred HHHh
Confidence 9994
No 14
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=97.26 E-value=0.00065 Score=52.09 Aligned_cols=73 Identities=18% Similarity=0.148 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCCCcHHHHHHHHHHHHHHhhhhhHHHhhhccHHHHHHHHHHH
Q psy3689 56 NMKRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPLIYAYFNREFRIAFKKTL 135 (151)
Q Consensus 56 ~~~~~~k~~~~~~~iv~~f~vcw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~ 135 (151)
..+.+++.+...+++.+...+.++-|..+..+ ..+++...+..+.--+++..+|+||..+|+..|+++++++
T Consensus 234 ~~k~~~qI~iQs~iIC~f~~i~a~iyv~m~f~--------~~p~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~~~~k~~ 305 (313)
T PF10321_consen 234 LSKAQRQIFIQSVIICFFHAIAAVIYVYMQFF--------PPPPWLIIIGQISWQLSHGCPPIIYLTLNRTIRNSVLKML 305 (313)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHeeeee--------cccHHHHHHHHHHHhccCCccceEEEEECHHHHHHHHHHH
Confidence 44567787777778877777777766554442 3456777777888889999999999999999999999999
Q ss_pred H
Q psy3689 136 Q 136 (151)
Q Consensus 136 ~ 136 (151)
.
T Consensus 306 ~ 306 (313)
T PF10321_consen 306 G 306 (313)
T ss_pred c
Confidence 3
No 15
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=97.13 E-value=0.004 Score=47.05 Aligned_cols=82 Identities=18% Similarity=0.190 Sum_probs=52.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCCCcHHHHHHHHHHHHHHhhhhhHHHhhhccHHHHHHHH
Q psy3689 53 STPNMKRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPLIYAYFNREFRIAFK 132 (151)
Q Consensus 53 ~~~~~~~~~k~~~~~~~iv~~f~vcw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~ 132 (151)
..++.++|.+.+.+..+.++++++...=+ +.........+ .+...........+.-+.|.+||+.-.+.|+++|+.++
T Consensus 201 ~s~~~~rE~~L~~~~~i~~~a~~~~~~~~-~~~~~~~~~~~-~~~~~~~r~~y~~~~~~~s~inP~~LLi~n~~lr~~~~ 278 (283)
T PF10323_consen 201 SSRSRRREIRLAIQVFILFCAFFVILVYY-IFSNYFAQNFN-TDPIFYLRAFYPILNGLLSFINPWMLLIFNKDLRKQVR 278 (283)
T ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccc-chHHHHHHHHHHHHHHHHHhhhhHHhhhccHHHHHHHH
Confidence 34455677887777777666655544433 33333332222 11122222355566678889999999999999999999
Q ss_pred HHHH
Q psy3689 133 KTLQ 136 (151)
Q Consensus 133 ~~~~ 136 (151)
+.++
T Consensus 279 ~~~~ 282 (283)
T PF10323_consen 279 RMLK 282 (283)
T ss_pred HHcC
Confidence 9884
No 16
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=96.52 E-value=0.065 Score=41.02 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCCCCCcHHHHHHHHHHHHHHhhhhhHHHhhhccHHHHHHHHHHHHH
Q psy3689 67 LGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPLIYAYFNREFRIAFKKTLQS 137 (151)
Q Consensus 67 ~~~iv~~f~vcw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~ 137 (151)
+..=.++|++||+|-.+--+...+.. . +.+....-..++-+...+|.++|++.++-.++.+...+.+
T Consensus 204 L~~Yp~ifiicw~fa~INRI~~~~~~--~--~~~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~~~~~ 270 (303)
T PF05462_consen 204 LVNYPLIFIICWIFATINRIYNFIGK--N--PFWLSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGSKILC 270 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC--C--chHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44678899999999988888776642 1 2344444345666788899999999999989888877743
No 17
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=96.38 E-value=0.013 Score=43.80 Aligned_cols=77 Identities=19% Similarity=0.116 Sum_probs=56.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCCCcHHHHHHHHHHHHHHhhhhhHHHhhhccHHHHHHH
Q psy3689 52 DSTPNMKRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPLIYAYFNREFRIAF 131 (151)
Q Consensus 52 ~~~~~~~~~~k~~~~~~~iv~~f~vcw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~ 131 (151)
+.+++.++|.+.++.....-+.|++.++-|.+...+. +...+....+.+.-.+..++|++|+...|+|+|+..
T Consensus 197 ~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~~~~-------~~~~~~F~~~t~~w~~~h~~DG~i~l~fN~~~r~~~ 269 (274)
T PF10328_consen 197 ESKKRRRKEIRFFIQSFIQDLLYLIDLIFYFFIPPLS-------SNRWWQFFCTTFSWVLVHALDGLIMLIFNSEIRRKI 269 (274)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHHHHhcceeEeEEcHHHHHHH
Confidence 4455667799999999999999999998888765541 222333444444345677789999999999999998
Q ss_pred HHHH
Q psy3689 132 KKTL 135 (151)
Q Consensus 132 ~~~~ 135 (151)
++..
T Consensus 270 ~~~~ 273 (274)
T PF10328_consen 270 RKKK 273 (274)
T ss_pred Hhcc
Confidence 8753
No 18
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=96.07 E-value=0.04 Score=41.70 Aligned_cols=75 Identities=25% Similarity=0.360 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCCCcHHHHHHHHHHHHHHhhhhhHHHhhhccHHHHHHHHH
Q psy3689 56 NMKRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPLIYAYFNREFRIAFKK 133 (151)
Q Consensus 56 ~~~~~~k~~~~~~~iv~~f~vcw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~ 133 (151)
.+...++.++.+.+-.+.=+++..|-....++..+... ...........+..+.+.+||+++.+.-+.||+.++|
T Consensus 218 tk~~h~~lv~~Lt~Q~~lP~~~~~p~~~~~~~~~~~~~---~~~~~e~~~~~~~~~~~~~~P~itl~fv~PYR~~i~r 292 (292)
T PF10317_consen 218 TKSMHRQLVKGLTIQALLPLFFYIPGVIIYFLSQFTGY---EHPFLEYLIFMLASLPPLIDPLITLYFVRPYRKAILR 292 (292)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHhchHhheeeeHhHHHHhcC
Confidence 44556788888888888888899988777777666543 3455566666677889999999999999999998864
No 19
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=95.32 E-value=0.016 Score=43.39 Aligned_cols=70 Identities=10% Similarity=0.178 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCCCcHHHHHHHHHHHHHHhhhhhHHHhhhccHHHHHHH
Q psy3689 58 KRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPLIYAYFNREFRIAF 131 (151)
Q Consensus 58 ~~~~k~~~~~~~iv~~f~vcw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~ 131 (151)
-.|.|+++++++.+..|+..|..-.++......... ..++..+..+++..-+.+-|++-...+++..+..
T Consensus 194 SpE~RAtktILlLVs~FV~fY~l~si~~~~~~~~~~----~~~~~~~~~~ls~cfptisPfvLI~~d~~i~~~~ 263 (265)
T PF03402_consen 194 SPETRATKTILLLVSTFVSFYGLSSILFIYLTSFKN----SPWLLNISVFLSSCFPTISPFVLISSDKRIIKFL 263 (265)
T ss_pred ChhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHhcC----CcceeEHHHHHhHHhHhhChHHhhccCchHHHHh
Confidence 458999999999999999999998776554433322 2233456667888889999999998888876654
No 20
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=94.35 E-value=0.26 Score=38.80 Aligned_cols=22 Identities=36% Similarity=0.458 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q psy3689 67 LGIIMSAFLACWLPFFIWYLGS 88 (151)
Q Consensus 67 ~~~iv~~f~vcw~P~~i~~~~~ 88 (151)
.+-|+++|.+||+|-.+-.++.
T Consensus 246 Ff~I~lVF~iCWlpNIINg~LL 267 (405)
T PF02101_consen 246 FFKIMLVFYICWLPNIINGSLL 267 (405)
T ss_pred HHHHHHHHHHHhhhhhHhHHHH
Confidence 4568899999999998754433
No 21
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=93.02 E-value=0.36 Score=36.87 Aligned_cols=72 Identities=19% Similarity=0.207 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCCCcHHHHHHHHHHHHHHhhhhhHHHhhhccHHHHHH
Q psy3689 56 NMKRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPLIYAYFNREFRIA 130 (151)
Q Consensus 56 ~~~~~~k~~~~~~~iv~~f~vcw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~ 130 (151)
.-++.+++++-+++-.++-.+|.+|..+..++..+..+ ........+.....++|.+|-++-.+.++.||+.
T Consensus 231 ty~kHk~av~SLi~Q~~~~~i~~~P~~~~~~~~~~~~~---~~q~i~~~~~~~f~~HS~~n~ivli~t~ppYR~f 302 (303)
T PF10327_consen 231 TYQKHKEAVRSLIAQFATSSICILPPFIFVVVVIFEFE---DAQVISEICLAIFSSHSSVNMIVLIITTPPYRKF 302 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecCC---CcHHHHHHHHHHHHHhhHhhheeeeEcCcchhhc
Confidence 45667888999999999999999999887766554332 2334445555566799999999999999999974
No 22
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=92.92 E-value=0.74 Score=34.78 Aligned_cols=80 Identities=10% Similarity=0.124 Sum_probs=54.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhcCCCCCcHHHHHHHHHHHHHHhhhhhHHHhhhccHHHHHHH
Q psy3689 53 STPNMKRERKAARTLGIIMSAF-LACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPLIYAYFNREFRIAF 131 (151)
Q Consensus 53 ~~~~~~~~~k~~~~~~~iv~~f-~vcw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~ 131 (151)
+.+..+..+|.++.+.+-+++. ++.-.|.........+.. .+.....++..+...++...-++..+.++.||+.+
T Consensus 221 S~~T~k~Qkkfl~~l~iQ~~ip~~~l~~P~~~~~~~~~~~~----~~q~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~~ 296 (302)
T PF10318_consen 221 SKKTRKMQKKFLIALIIQVLIPFIFLFIPLIYFIISIIFGY----YNQALNNISFIIISLHGIASTIVMILVHKPYRKFL 296 (302)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc----cccccchHHHHHHHhccHHHHHHHhhccHHHHHHH
Confidence 3344555677777776555554 455567766555443321 22344556666777999999999999999999999
Q ss_pred HHHHH
Q psy3689 132 KKTLQ 136 (151)
Q Consensus 132 ~~~~~ 136 (151)
.++++
T Consensus 297 ~~~~~ 301 (302)
T PF10318_consen 297 LSLFR 301 (302)
T ss_pred HHHhc
Confidence 99984
No 23
>KOG4564|consensus
Probab=89.00 E-value=0.69 Score=37.55 Aligned_cols=73 Identities=14% Similarity=0.284 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCCCcHHHHHHHHHHHHHHhhhhhHHHhhhccHHHHHHHHHHHHHh
Q psy3689 59 RERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPLIYAYFNREFRIAFKKTLQSC 138 (151)
Q Consensus 59 ~~~k~~~~~~~iv~~f~vcw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~ 138 (151)
..+|++|..++.+=+|-|- .++..+.+++.........+-.+|..+...+=-++|+|.|++.|.++++.+.+.
T Consensus 348 ~y~K~vKaTLvLIPLfGI~-------~ilf~~~P~~~~~~~v~~~~~~~L~SfQGf~VAvlYCFlN~EVq~elrr~W~r~ 420 (473)
T KOG4564|consen 348 QYRKLVKATLVLIPLFGIH-------YILFAFRPDEDTLREVYLYFELFLGSFQGFFVAVLYCFLNGEVQAELRRKWSRW 420 (473)
T ss_pred HHHHHHHHHHHHHHHcCCe-------eEEEEecCchHHHHHHHHHHHHHHHhccchheehheeecCHHHHHHHHHHHHhc
Confidence 4788888888777666543 233333332110112233444556677777888999999999999999998653
No 24
>KOG4193|consensus
Probab=86.85 E-value=12 Score=31.69 Aligned_cols=67 Identities=13% Similarity=0.136 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCCCcHHHHHHHHHHHHHHhhhhhHHHhhhccHHHHHHHHHHHH
Q psy3689 62 KAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPLIYAYFNREFRIAFKKTLQ 136 (151)
Q Consensus 62 k~~~~~~~iv~~f~vcw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~ 136 (151)
+..+..++.+.++-+.|.--...+.- .....+.++..++-.+....=.++|+++.++.|++.++.++
T Consensus 514 ~~~~~~l~L~~lLGlTW~fgi~s~~~--------~~~~v~~YlFti~NalQG~fIFi~~cll~~kvr~~~~k~~~ 580 (610)
T KOG4193|consen 514 SLIRSALALLFLLGLTWIFGIFSWLP--------GTSVVFAYLFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLC 580 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--------ccchHHHHHHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhc
Confidence 55667777777777777644433331 12333444444444555667789999999999999999996
No 25
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=86.75 E-value=2.7 Score=32.34 Aligned_cols=74 Identities=14% Similarity=0.094 Sum_probs=51.9
Q ss_pred CchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHhhcCCCCCcHHHHHHHHHHHHHHhhhhhHHHhhhccHHHHHH
Q psy3689 54 TPNMKRERKAARTLGIIMS-AFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPLIYAYFNREFRIA 130 (151)
Q Consensus 54 ~~~~~~~~k~~~~~~~iv~-~f~vcw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~ 130 (151)
++..+..++..|.+.+-++ -.++|+.|-.+.+....+. .+...+...+.......=|.+||+.-.+.-+.||+.
T Consensus 235 ~~T~~lq~qL~~AL~vQT~IPi~vsf~Pc~~~wy~pif~---i~~~~~~n~~~~iAls~FPf~DPlAii~~lP~~R~r 309 (310)
T PF10319_consen 235 KKTKRLQRQLFKALIVQTVIPICVSFSPCVLSWYGPIFG---IDLGRWNNYFSVIALSAFPFLDPLAIILCLPAFRNR 309 (310)
T ss_pred HhHHHHHHHHHHHHHHHHHhHHHHhhccHHHHHhHHHHc---CChhHHHHHHHHHHHHHccccCchHhheecHHhhcc
Confidence 3344556777777775543 4678888988877554443 245566666666666677999999999888999874
No 26
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=85.09 E-value=0.15 Score=38.60 Aligned_cols=73 Identities=16% Similarity=0.269 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHhhcCCCCCcHHHHHHHHHHHHHHhhhhhHHHhhhccHHHHHHHH
Q psy3689 56 NMKRERKAARTLGI-IMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPLIYAYFNREFRIAFK 132 (151)
Q Consensus 56 ~~~~~~k~~~~~~~-iv~~f~vcw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~ 132 (151)
.++-.++..+++++ .++-++..++|..++.+.-.+.-+ ... .......+..+-|++||++-.+.-|+||++++
T Consensus 234 ~~~lq~QLf~aLv~Qt~iP~i~~~~P~~~~~~~p~~~i~---~~~-~~~~~~~~~~~yP~iDpl~~i~~ik~yR~~i~ 307 (307)
T PF10326_consen 234 TRKLQKQLFKALVIQTIIPFIFMYIPVFIVFILPFFGID---LGF-FSNIISILISLYPAIDPLPVIFIIKDYRKAIK 307 (307)
T ss_pred hHHHHHHHHHHHHHHhhhhheeeecchhheeeeeccCCC---CCc-cccHhhhhEEEEeehhhheeeEeeHHHHHhhC
Confidence 34445667666664 445677889999887776544322 221 22344445568899999999999999999864
No 27
>KOG2575|consensus
Probab=81.20 E-value=2.1 Score=34.18 Aligned_cols=26 Identities=19% Similarity=0.501 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3689 59 RERKAARTLGIIMSAFLACWLPFFIW 84 (151)
Q Consensus 59 ~~~k~~~~~~~iv~~f~vcw~P~~i~ 84 (151)
.-.+.++...+++++|+++|+|+...
T Consensus 253 ~f~ri~~ia~~Vv~TF~iiw~P~~~~ 278 (510)
T KOG2575|consen 253 SFARIIKIALAVVGTFVIIWLPFLLS 278 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45788999999999999999999653
No 28
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=74.10 E-value=32 Score=25.32 Aligned_cols=71 Identities=15% Similarity=0.054 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCCCcHHHHHHHHHHHHHHhhhhhHHHhhhccHHHHHH
Q psy3689 58 KRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPLIYAYFNREFRIA 130 (151)
Q Consensus 58 ~~~~k~~~~~~~iv~~f~vcw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~ 130 (151)
+.|++..++.++..+++++.-+...+..... ..+. .+..........+..=+-+...|++-.+++++.|+.
T Consensus 204 ~~er~L~~is~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~f~sD~ltl~~P~iLl~fs~~vR~~ 274 (275)
T PF02118_consen 204 SVERNLTIISFIISFVQLLIAIWQIINSFAF-FFDF-LPISSFLYYLLPFASDLLTLSQPYILLIFSKNVRRQ 274 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcc-ccHHHHHHHHHHHHHHHHHHHHHHHHheECHhhhcc
Confidence 4567777766666666655444443321111 1111 122333344444444455667899999999999985
No 29
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=70.62 E-value=50 Score=25.90 Aligned_cols=39 Identities=10% Similarity=0.162 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhhhccHHHHHHHHHHHHH
Q psy3689 99 RVIVVLVFWTGYFNSSLNPLIYAYFNREFRIAFKKTLQS 137 (151)
Q Consensus 99 ~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~ 137 (151)
.....+......+++.+=|.+-....+..|+.+++.+..
T Consensus 283 ~~~~~~~e~~i~l~~~~i~~~~i~s~~~wrk~f~~~~~~ 321 (365)
T PF03125_consen 283 TILNHIFENCIFLNPIFICPVIIFSVPSWRKEFKRSFPK 321 (365)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHcCHHHHHHHHHhhhh
Confidence 344556666778888888888888899999999998864
No 30
>KOG3827|consensus
Probab=67.07 E-value=2.5 Score=33.38 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcC
Q psy3689 60 ERKAARTLGIIMSAFLACWLPFFIWYLGSSLCG 92 (151)
Q Consensus 60 ~~k~~~~~~~iv~~f~vcw~P~~i~~~~~~~~~ 92 (151)
+.|.=.|+++=.+.|++.|+-|.+++.+.++..
T Consensus 59 D~kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~h 91 (400)
T KOG3827|consen 59 DLKWRWMLLIFSLSFVLSWLFFGVIWWLIAYAH 91 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 335556788888999999999988877776643
No 31
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=63.22 E-value=17 Score=20.79 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3689 58 KRERKAARTLGIIMSAFLACWL 79 (151)
Q Consensus 58 ~~~~k~~~~~~~iv~~f~vcw~ 79 (151)
++.+|.-.++..++++|++-|+
T Consensus 33 k~~~~~~~i~~~~~i~~l~v~~ 54 (59)
T PF09889_consen 33 KRMRKTQYIFFGIFILFLAVWI 54 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666655554
No 32
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=61.46 E-value=47 Score=22.30 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCC
Q psy3689 56 NMKRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGP 93 (151)
Q Consensus 56 ~~~~~~k~~~~~~~iv~~f~vcw~P~~i~~~~~~~~~~ 93 (151)
+.+..++...+..+..+.|++|++-++...-...+.++
T Consensus 30 ~~~~Hr~~Ml~a~~ls~lFlv~Yl~~~~~~g~~~f~g~ 67 (133)
T PF04238_consen 30 RIKLHRKLMLTAFVLSALFLVSYLYYHFLGGSTPFGGP 67 (133)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Confidence 34456778888889999999999988776444444443
No 33
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=55.40 E-value=93 Score=23.87 Aligned_cols=83 Identities=17% Similarity=0.111 Sum_probs=53.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCCCcHHH-HHHHHHHHHHHhhhhhHHHhhhccHHHHHHHHH
Q psy3689 55 PNMKRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRV-IVVLVFWTGYFNSSLNPLIYAYFNREFRIAFKK 133 (151)
Q Consensus 55 ~~~~~~~k~~~~~~~iv~~f~vcw~P~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~ 133 (151)
=+.+.+.|.++++...+.+..+.-+.+.+..+......++.+.+.. ...-.....-..+.+=|++.....++.|+...+
T Consensus 223 YQl~ENl~slr~L~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~y~al~e~~~~~P~Y~ii~~~~~~~~~k~~r~~~~~ 302 (324)
T PF10292_consen 223 YQLEENLRSLRLLKPFIILSSIFIFFYIFASIFLRLFNPSMSKPNYFALAELNHIFPLYSIISPLILYRKIKKIRKKRKK 302 (324)
T ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888888877777777776665555544332222221 111122344678888999999999998988887
Q ss_pred HHHH
Q psy3689 134 TLQS 137 (151)
Q Consensus 134 ~~~~ 137 (151)
-+..
T Consensus 303 ~l~~ 306 (324)
T PF10292_consen 303 RLEK 306 (324)
T ss_pred HHHH
Confidence 6653
No 34
>PF03155 Alg6_Alg8: ALG6, ALG8 glycosyltransferase family; InterPro: IPR004856 N-linked (asparagine-linked) glycosylation of proteins is mediated by a highly conserved pathway in eukaryotes, in which a lipid (dolichol phosphate)-linked oligosaccharide is assembled at the endoplasmic reticulum membrane prior to the transfer of the oligosaccharide moiety to the target asparagine residues. This oligosaccharide is composed of Glc(3)Man(9)GlcNAc(2). The addition of the three glucose residues is the final series of steps in the synthesis of the oligosaccharide precursor. Alg6 transfers the first glucose residue, and Alg8 transfers the second one []. In the human alg6 gene, a C-T transition, which causes Ala333 to be replaced with Val, has been identified as the cause of a congenital disorder of glycosylation, designated as type Ic OMIM:603147 []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0005789 endoplasmic reticulum membrane
Probab=50.55 E-value=31 Score=28.26 Aligned_cols=26 Identities=12% Similarity=0.257 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3689 58 KRERKAARTLGIIMSAFLACWLPFFI 83 (151)
Q Consensus 58 ~~~~k~~~~~~~iv~~f~vcw~P~~i 83 (151)
..-.+.++..++++++|.++|.|+..
T Consensus 218 ~~~~~~~~lg~~Vi~~f~~~~~PF~~ 243 (469)
T PF03155_consen 218 FSIKRLIKLGIVVIATFALSFGPFLY 243 (469)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999964
No 35
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=48.89 E-value=48 Score=18.96 Aligned_cols=31 Identities=26% Similarity=0.194 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy3689 56 NMKRERKAARTLGIIMSAF-LACWLPFFIWYL 86 (151)
Q Consensus 56 ~~~~~~k~~~~~~~iv~~f-~vcw~P~~i~~~ 86 (151)
..++++|-..+.+.++++| ++|-+...+-.+
T Consensus 24 ~~r~RrRrc~~~v~~v~~~~~~c~~S~~lG~~ 55 (60)
T PF06072_consen 24 ASRRRRRRCRLAVAIVFAVVALCVLSGGLGAL 55 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566555555555 666655544333
No 36
>COG2322 Predicted membrane protein [Function unknown]
Probab=48.30 E-value=94 Score=21.85 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcC
Q psy3689 56 NMKRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCG 92 (151)
Q Consensus 56 ~~~~~~k~~~~~~~iv~~f~vcw~P~~i~~~~~~~~~ 92 (151)
..++.+++.-+.....++|+++++-++...---.+.+
T Consensus 71 ~i~~Hk~aMltA~~l~l~FlvlYltr~~l~~~t~f~~ 107 (177)
T COG2322 71 NIEKHKRAMLTAFTLALVFLVLYLTRHGLGGETAFGG 107 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 4456778888888999999999988877554433333
No 37
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=38.37 E-value=45 Score=20.75 Aligned_cols=14 Identities=7% Similarity=0.363 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHH
Q psy3689 66 TLGIIMSAFLACWL 79 (151)
Q Consensus 66 ~~~~iv~~f~vcw~ 79 (151)
+.+.+++.+++||.
T Consensus 43 iFil~VilwfvCC~ 56 (94)
T PF05393_consen 43 IFILLVILWFVCCK 56 (94)
T ss_pred HHHHHHHHHHHHHH
Confidence 33455556666665
No 38
>PHA02849 putative transmembrane protein; Provisional
Probab=35.99 E-value=94 Score=18.85 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q psy3689 66 TLGIIMSAFLACWLPFFIWYLGS 88 (151)
Q Consensus 66 ~~~~iv~~f~vcw~P~~i~~~~~ 88 (151)
.+++.+.++++|.+-|.+..++.
T Consensus 17 v~vi~v~v~vI~i~~flLlyLvk 39 (82)
T PHA02849 17 VTVILVFVLVISFLAFMLLYLIK 39 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777777777766654
No 39
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=33.99 E-value=36 Score=21.03 Aligned_cols=19 Identities=16% Similarity=0.627 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3689 63 AARTLGIIMSAFLACWLPF 81 (151)
Q Consensus 63 ~~~~~~~iv~~f~vcw~P~ 81 (151)
.-|.+.+.++.|++|++-|
T Consensus 66 NrK~~~ls~~l~~v~~LvY 84 (85)
T PF15188_consen 66 NRKSMLLSVALFFVCFLVY 84 (85)
T ss_pred hhhhHHHHHHHHHHHHHHc
Confidence 3456677777788887765
No 40
>COG1823 Predicted Na+/dicarboxylate symporter [General function prediction only]
Probab=33.00 E-value=1.8e+02 Score=23.48 Aligned_cols=33 Identities=6% Similarity=0.117 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhc
Q psy3689 59 RERKAARTLGIIMSAFLACWLPFFIWYLGSSLC 91 (151)
Q Consensus 59 ~~~k~~~~~~~iv~~f~vcw~P~~i~~~~~~~~ 91 (151)
+-..++.-+++=++.+++-.+||.++.+.....
T Consensus 217 ~~I~t~~~ivM~lV~~VirLTPYgV~AlMtkv~ 249 (458)
T COG1823 217 AAIDTLQSIVMKLVRLVIRLTPYGVLALMTKVV 249 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 334556777788889999999999988876554
No 41
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=32.60 E-value=1.1e+02 Score=19.43 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=20.1
Q ss_pred HHHHHHHHhHhhcCCCCCcHHHHHHHHHHHHHHhhhhhHH
Q psy3689 79 LPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPL 118 (151)
Q Consensus 79 ~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPi 118 (151)
+|..+-..+....+......+.+.....+++..-.|.|-+
T Consensus 54 ~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~w 93 (100)
T TIGR02230 54 IPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNAW 93 (100)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4444444433332222233345555566677777777763
No 42
>PF13071 DUF3935: Protein of unknown function (DUF3935)
Probab=32.42 E-value=1e+02 Score=17.72 Aligned_cols=27 Identities=11% Similarity=0.261 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy3689 64 ARTLGIIMSAFLACWLPFFIWYLGSSL 90 (151)
Q Consensus 64 ~~~~~~iv~~f~vcw~P~~i~~~~~~~ 90 (151)
+|.+.-|++.|++.|.....+..+.-+
T Consensus 4 lKqi~Gi~IsfFVFwfsmLGVqmfaeF 30 (68)
T PF13071_consen 4 LKQIFGIIISFFVFWFSMLGVQMFAEF 30 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456677888999999988776665544
No 43
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=30.02 E-value=87 Score=20.53 Aligned_cols=24 Identities=13% Similarity=0.306 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhh
Q psy3689 66 TLGIIMSAFLACWLPFFIWYLGSSL 90 (151)
Q Consensus 66 ~~~~iv~~f~vcw~P~~i~~~~~~~ 90 (151)
.+.++|+-|++ |-|..+..+.+.+
T Consensus 11 ~Ia~mVlGFi~-fWPlGla~Lay~i 34 (115)
T PF11014_consen 11 WIAAMVLGFIV-FWPLGLALLAYMI 34 (115)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 45566677777 5566665555444
No 44
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=29.56 E-value=1.4e+02 Score=22.98 Aligned_cols=70 Identities=13% Similarity=0.152 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCCCcHHHHHHHHHHHHHHhhhhhHHHhhhccHHHHHHHHH
Q psy3689 60 ERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNPLIYAYFNREFRIAFKK 133 (151)
Q Consensus 60 ~~k~~~~~~~iv~~f~vcw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~ 133 (151)
|.+.+|..+. +|++.-.+..++.+...+.- +.........+..-+-.+-.+..|..+.+.+||.|+.+-.
T Consensus 225 Ei~ILKQAif---IFvlFQ~ss~VFl~~qt~~~-~~~tAFlIKR~iNT~ei~agaatP~ffffTs~eirk~~s~ 294 (305)
T PF04789_consen 225 EITILKQAIF---IFVLFQASSCVFLLCQTFKF-NVATAFLIKRIINTMEIFAGAATPCFFFFTSKEIRKLVSS 294 (305)
T ss_pred hHHHHHHHHH---HHHHHHHHHHHHHhheeeee-cchHHHHHHHHHHHHHHHhhccCCeEEEEehHHHHHHHHh
Confidence 5555555544 44454555544444332221 1223334445555566677888999999999998876654
No 45
>KOG1726|consensus
Probab=28.38 E-value=2.4e+02 Score=20.85 Aligned_cols=18 Identities=33% Similarity=0.811 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy3689 66 TLGIIMSAFLACWLPFFI 83 (151)
Q Consensus 66 ~~~~iv~~f~vcw~P~~i 83 (151)
+.+=.+.-|+++|+|++-
T Consensus 46 t~~e~~~d~~lsw~P~Y~ 63 (225)
T KOG1726|consen 46 TVFETLTDFLLSWFPFYS 63 (225)
T ss_pred HHHHHHHHHHHHHhhhHH
Confidence 333445567888888754
No 46
>PF10445 DUF2456: Protein of unknown function (DUF2456); InterPro: IPR018852 This entry represents a family of uncharacterised proteins.
Probab=27.89 E-value=1.3e+02 Score=18.90 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3689 60 ERKAARTLGIIMSAFLACWLPFFIWYL 86 (151)
Q Consensus 60 ~~k~~~~~~~iv~~f~vcw~P~~i~~~ 86 (151)
-.++.+-++..++.|++.|-|...+..
T Consensus 26 v~~~~rgli~av~~f~~~WP~tigIla 52 (94)
T PF10445_consen 26 VQQAIRGLILAVLIFLLLWPITIGILA 52 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 458899999999999999999876444
No 47
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=27.69 E-value=45 Score=20.25 Aligned_cols=17 Identities=29% Similarity=0.264 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhHhh
Q psy3689 74 FLACWLPFFIWYLGSSL 90 (151)
Q Consensus 74 f~vcw~P~~i~~~~~~~ 90 (151)
.+.|+.|..++.++...
T Consensus 26 ~l~Cc~PlGi~Ai~~s~ 42 (82)
T PF04505_consen 26 TLCCCWPLGIVAIVYSS 42 (82)
T ss_pred HHHHHhhHHHHHheech
Confidence 33666799888887655
No 48
>PRK13735 conjugal transfer mating pair stabilization protein TraG; Provisional
Probab=27.61 E-value=2.6e+02 Score=25.39 Aligned_cols=28 Identities=7% Similarity=0.094 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy3689 61 RKAARTLGIIMSAFLACWLPFFIWYLGS 88 (151)
Q Consensus 61 ~k~~~~~~~iv~~f~vcw~P~~i~~~~~ 88 (151)
.+.+-++-.++-++++|-.|..++..+.
T Consensus 322 ~~~LP~m~svl~~i~yglFPlV~llall 349 (942)
T PRK13735 322 MRTLPMMQTILMGIAIGIFPLLVLAAVF 349 (942)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666677777778888877765543
No 49
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=27.58 E-value=2.4e+02 Score=22.22 Aligned_cols=61 Identities=18% Similarity=0.279 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhcCC-CCCcHHHHHHHHHHHHHHhhhhhHHHhhhcc
Q psy3689 64 ARTLGIIMSAFLACWLPFFIWYLGSSLCGP-KCSTPRVIVVLVFWTGYFNSSLNPLIYAYFN 124 (151)
Q Consensus 64 ~~~~~~iv~~f~vcw~P~~i~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~ 124 (151)
..|.+=++++.++-|+.|+...+......- .-+.+..+......+-|+|+.+-+.+++++-
T Consensus 234 ~elv~HHIVTllLI~lSY~fhftr~GlAI~itmDvSD~~Ls~sK~lnYl~~~l~~~iF~iFv 295 (395)
T COG5058 234 KELVFHHIVTLLLIWLSYVFHFTRMGLAIYITMDVSDFFLSLSKTLNYLNSVLATFIFGIFV 295 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccceEEEEEeccHHHHHHHHHHHHhhchhHHHHHHHHH
Confidence 445666788888899999886665432110 0245667778888888999988888877664
No 50
>PHA02657 hypothetical protein; Provisional
Probab=26.35 E-value=1.5e+02 Score=18.36 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Q psy3689 64 ARTLGIIMSAFLACWLPFFIWYLGS 88 (151)
Q Consensus 64 ~~~~~~iv~~f~vcw~P~~i~~~~~ 88 (151)
-..+++.+.+|.+|.+-|.+..++.
T Consensus 25 ~~imVitvfv~vI~il~flLLYLvk 49 (95)
T PHA02657 25 ESILVFTIFIFVVCILIYLLIYLVD 49 (95)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777778877777766654
No 51
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=26.14 E-value=3.9e+02 Score=23.78 Aligned_cols=31 Identities=16% Similarity=0.091 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy3689 60 ERKAARTLGIIMSAFLACWLPFFIWYLGSSL 90 (151)
Q Consensus 60 ~~k~~~~~~~iv~~f~vcw~P~~i~~~~~~~ 90 (151)
|-|+++.+..|+..|++.|--..++.++..+
T Consensus 444 EYRaLk~L~~Iv~~Y~~~~~llG~i~l~~wi 474 (800)
T TIGR00934 444 EYRALKCLCSIVLVYFLGFNILGFVLLLPWI 474 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999888776655554443
No 52
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=25.39 E-value=1.7e+02 Score=17.99 Aligned_cols=29 Identities=28% Similarity=0.221 Sum_probs=20.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3689 53 STPNMKRERKAARTLGIIMSAFLACWLPF 81 (151)
Q Consensus 53 ~~~~~~~~~k~~~~~~~iv~~f~vcw~P~ 81 (151)
...+.+-.+|+..+.++..++|.+.+.-+
T Consensus 43 AP~~~~l~rk~~~TTiiaavi~~~~~~~~ 71 (85)
T PF07330_consen 43 APANPRLKRKALITTIIAAVIFAIIYLII 71 (85)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445567888888888888887765544
No 53
>COG1687 AzlD Predicted branched-chain amino acid permeases (azaleucine resistance) [Amino acid transport and metabolism]
Probab=25.22 E-value=1.2e+02 Score=19.48 Aligned_cols=24 Identities=29% Similarity=0.474 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3689 63 AARTLGIIMSAFLACWLPFFIWYL 86 (151)
Q Consensus 63 ~~~~~~~iv~~f~vcw~P~~i~~~ 86 (151)
.+....+++++|+.-|+||.++--
T Consensus 6 ~l~i~v~~v~t~~~RilPF~if~~ 29 (106)
T COG1687 6 ILTIIVIAVGTFLTRILPFLIFKS 29 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455667788999999999988544
No 54
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=24.48 E-value=1.2e+02 Score=22.52 Aligned_cols=17 Identities=24% Similarity=0.430 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3689 70 IMSAFLACWLPFFIWYL 86 (151)
Q Consensus 70 iv~~f~vcw~P~~i~~~ 86 (151)
+++++++-|+|+.++..
T Consensus 238 ~~l~~l~p~~~~~~~~~ 254 (262)
T PF14257_consen 238 VFLVGLLPWLPLILIIG 254 (262)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445555555544333
No 55
>PF15108 TMEM37: Voltage-dependent calcium channel gamma-like subunit protein family
Probab=23.91 E-value=2.1e+02 Score=20.04 Aligned_cols=16 Identities=6% Similarity=-0.124 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHhhh
Q psy3689 99 RVIVVLVFWTGYFNSS 114 (151)
Q Consensus 99 ~~~~~~~~~l~~~ns~ 114 (151)
.|-...+.++.++|.+
T Consensus 158 fWCeFtAsFLfFLN~i 173 (184)
T PF15108_consen 158 FWCEFTASFLFFLNGI 173 (184)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3333444444444443
No 56
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=23.44 E-value=1.8e+02 Score=17.40 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3689 56 NMKRERKAARTLGIIMSAFLACWLPFFI 83 (151)
Q Consensus 56 ~~~~~~k~~~~~~~iv~~f~vcw~P~~i 83 (151)
..+++++-+.++.+=+..|++.+.-+..
T Consensus 13 ~~~R~r~Y~i~M~~Ri~~fvlA~~~~~~ 40 (73)
T PF11298_consen 13 QRRRRRRYLIMMGIRIPCFVLAAVVYRL 40 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455678888888888888887776643
No 57
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=23.28 E-value=1.8e+02 Score=17.58 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3689 62 KAARTLGIIMSAFLACWLPF 81 (151)
Q Consensus 62 k~~~~~~~iv~~f~vcw~P~ 81 (151)
|-++..+...++|++.|.-+
T Consensus 5 rEA~~tl~l~l~yf~~W~~~ 24 (80)
T PF06196_consen 5 REARWTLGLTLIYFAWWYGF 24 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445556666777777543
No 58
>COG3821 Predicted membrane protein [Function unknown]
Probab=22.91 E-value=72 Score=23.18 Aligned_cols=18 Identities=28% Similarity=0.680 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy3689 69 IIMSAFLACWLPFFIWYL 86 (151)
Q Consensus 69 ~iv~~f~vcw~P~~i~~~ 86 (151)
..+.+|++||+-|.-..-
T Consensus 8 lA~~~F~~~W~~yt~~~~ 25 (234)
T COG3821 8 LALAVFLLCWLLYTPAST 25 (234)
T ss_pred HHHHHHHHHHHhhhHHhc
Confidence 456789999998866443
No 59
>KOG4686|consensus
Probab=22.00 E-value=2.6e+02 Score=22.14 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3689 60 ERKAARTLGIIMSAFLACWLPFFIWYLG 87 (151)
Q Consensus 60 ~~k~~~~~~~iv~~f~vcw~P~~i~~~~ 87 (151)
-.-...++.+|.+.|.+.|.|+....-.
T Consensus 262 f~ppfw~~~iicv~yyva~fPFi~lg~~ 289 (459)
T KOG4686|consen 262 FYPPFWVLVIICVLYYVAWFPFITLGPM 289 (459)
T ss_pred cCccHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3456889999999999999999775433
No 60
>PRK01100 putative accessory gene regulator protein; Provisional
Probab=21.84 E-value=3.1e+02 Score=19.73 Aligned_cols=16 Identities=38% Similarity=0.872 Sum_probs=12.9
Q ss_pred hhhHHHhhhccHHHHH
Q psy3689 114 SLNPLIYAYFNREFRI 129 (151)
Q Consensus 114 ~~NPiiY~~~~~~fR~ 129 (151)
.+-|+-|-++++.++.
T Consensus 186 tllPi~~k~~~~~~~~ 201 (210)
T PRK01100 186 SINPITYKLLNRRYKN 201 (210)
T ss_pred HHHHHHHHHHHhhhcc
Confidence 4789999998888765
No 61
>TIGR01912 TatC-Arch Twin arginine targeting (Tat) protein translocase TatC, Archaeal clade. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR00945) represents the bacterial clade of this family. TatC is often found (in bacteria) in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=20.79 E-value=3.1e+02 Score=20.20 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3689 58 KRERKAARTLGIIMSAFLACWLPFFIWYL 86 (151)
Q Consensus 58 ~~~~k~~~~~~~iv~~f~vcw~P~~i~~~ 86 (151)
+-+.|..+.+..+++.+.+||.|+..-.+
T Consensus 8 ELR~Rli~~~i~~~~~~~~~~~~~~~~~i 36 (237)
T TIGR01912 8 TFRLILLLVALAIVTGSVLGWLTIFTPFI 36 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999966544333
No 62
>PF10624 TraS: Plasmid conjugative transfer entry exclusion protein TraS; InterPro: IPR018898 Entry exclusion (Eex) is a process which prevents redundant transfer of DNA between donor cells. TraS is a protein involved in Eex. It blocks redundant conjugative DNA synthesis and transport between donor cells, and it is suggested that TraS interferes with a signalling pathway that is required to trigger DNA transfer []. TraS on the recipient cell is known to form an interaction with TraG on the donor cell [].
Probab=20.05 E-value=99 Score=20.90 Aligned_cols=16 Identities=31% Similarity=0.995 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3689 71 MSAFLACWLPFFIWYL 86 (151)
Q Consensus 71 v~~f~vcw~P~~i~~~ 86 (151)
++.|++.|.-.++..+
T Consensus 31 il~f~~lWqglFiwlF 46 (164)
T PF10624_consen 31 ILLFIVLWQGLFIWLF 46 (164)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555544433
Done!