RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3689
(151 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 60.8 bits (148), Expect = 6e-12
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 47 MHPISDSTPNMKRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVF 106
+ + + +ERKAA+ L +++ F+ CWLP+ I L SLC +L+
Sbjct: 177 GASQARAKRSSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCPLSIWRLLPTALLIT 236
Query: 107 -WTGYFNSSLNPLIY 120
W Y NS LNP+IY
Sbjct: 237 LWLAYVNSCLNPIIY 251
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 40.9 bits (96), Expect = 9e-05
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 56 NMKRERKAARTLGIIMSAFLACWLPFFIWYLGSSL----CGPKCSTPRVIVVLVFWTGYF 111
K+ +KA + + II+ F+ WLPF + SL C + I + T
Sbjct: 235 KSKKNKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEII 294
Query: 112 NSS---LNPLIYAYFNREFRIAFKKTLQS 137
+ S +NPLIYA+ + F KK+L+
Sbjct: 295 SLSHCCINPLIYAFVSEFFNKHKKKSLKL 323
>gnl|CDD|203321 pfam05733, Tenui_N, Tenuivirus/Phlebovirus nucleocapsid protein.
This family consists of several Tenuivirus and
Phlebovirus nucleocapsid proteins. These are ssRNA
viruses.
Length = 224
Score = 29.2 bits (66), Expect = 0.61
Identities = 17/63 (26%), Positives = 21/63 (33%), Gaps = 14/63 (22%)
Query: 6 DSDVTLSRVAAALLNKHLQI-------NGITASRLDLQDTSVELEDGIMHP-----ISDS 53
+TLSRVAAA Q +T S +D MHP I +
Sbjct: 100 RDAITLSRVAAAFAGWTCQALKVVSAKLAVTGSDMDTSGPDYPRWM--MHPQFAGLIDPT 157
Query: 54 TPN 56
P
Sbjct: 158 LPK 160
>gnl|CDD|221397 pfam12054, DUF3535, Domain of unknown function (DUF3535). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 439 to 459 amino acids in length. This domain is
found associated with pfam00271, pfam02985, pfam00176.
This domain has two completely conserved residues (P and
K) that may be functionally important.
Length = 442
Score = 29.2 bits (66), Expect = 0.94
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 27/98 (27%)
Query: 62 KAARTLGIIMSAF-----LACWLPFFIWYLGSSLCGPKCSTPRVIV--VLVFW------- 107
AA+ LG+++S + P + L S +T R++ ++ W
Sbjct: 108 SAAKALGLLLSYLPEPTLGVVFDPVLLGGLTSPS-----ATQRLLASIIIAEWAKNDKPG 162
Query: 108 ---TGYFNSSLNPLI----YAYFNREFRIAFKKTLQSC 138
+ L ++ Y+ E + K+ C
Sbjct: 163 KPAPSLLSPRLLTILENEEPPYY-DELVPSLKRLRTQC 199
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 28.3 bits (63), Expect = 1.5
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 110 YFNSSLNPLIYAYFNREFRIAFKKTLQSCCYALILRRSD 148
+ + +NP+IYA+ + F+ FK I + S+
Sbjct: 282 FVHCCVNPIIYAFVGKNFKKVFKNMFCRTNNIFIRQSSN 320
>gnl|CDD|226684 COG4231, COG4231, Indolepyruvate ferredoxin oxidoreductase, alpha
and beta subunits [Energy production and conversion].
Length = 640
Score = 28.1 bits (63), Expect = 2.2
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 61 RKAARTLGIIMSAFLAC-----WLPF----FIWYLGSSL---CGPKCSTPRVIVVLVFWT 108
+KAA LG S + C P +GSS+ G ++ + IV ++ +
Sbjct: 396 KKAAAELGGHPSGDIGCYTLGILPPLNTVDTTTMMGSSIGIAGGLSFASTKKIVAVIGDS 455
Query: 109 GYFNSSLNPLIYAYFNR 125
+F+S + LI A +N+
Sbjct: 456 TFFHSGILALINAVYNK 472
>gnl|CDD|224073 COG1151, COG1151, 6Fe-6S prismane cluster-containing protein
[Energy production and conversion].
Length = 576
Score = 27.0 bits (60), Expect = 4.3
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 9 VTLSRVAAALLNKHLQINGITASRLDLQDTSVELEDGIM 47
V S +L + GIT D + + LE+ I
Sbjct: 530 VFGSPDVTKVLTEDFGTGGITTVEEDPKKAADLLEEHIE 568
>gnl|CDD|225986 COG3455, COG3455, Type VI protein secretion system component VasF
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 262
Score = 26.6 bits (59), Expect = 5.8
Identities = 3/47 (6%), Positives = 13/47 (27%), Gaps = 3/47 (6%)
Query: 42 LEDGIMHPIS---DSTPNMKRERKAARTLGIIMSAFLACWLPFFIWY 85
L +S + + + ++ +A + ++
Sbjct: 194 LRGDAPPALSPHWKGAAARRYRLRRRLPVWVVALGAVALLVVAYLGL 240
>gnl|CDD|116688 pfam08083, PROCN, PROCN (NUC071) domain. The PROCN domain is the
central domain in pre-mRNA splicing factors of PRO8
family.
Length = 408
Score = 26.2 bits (58), Expect = 7.1
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 28 ITASRLDLQDTSVELEDGIMHPISDSTPNMKRERKAARTLGIIMSAFLACW 78
IT R++ +EL +M I D P R+ K ART+ +S CW
Sbjct: 279 ITKQRVE-SYYDLELRAAVMKDILDMIPEGLRQNK-ARTILQHLSEAWRCW 327
>gnl|CDD|217401 pfam03169, OPT, OPT oligopeptide transporter protein. The OPT
family of oligopeptide transporters is distinct from the
ABC pfam00005 and PTR pfam00854 transporter families.
OPT transporters were first recognised in fungi (Candida
albicans and Schizosaccharomyces pombe), but this
alignment also includes orthologues from Arabidopsis
thaliana. OPT transporters are thought to have 12-14
transmembrane domains and contain the following motif:
SPYxEVRxxVxxxDDP.
Length = 619
Score = 26.1 bits (58), Expect = 9.3
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 8/82 (9%)
Query: 50 ISDSTPNMKRERKAARTLGIIMSA-FLACWLPFFIWYLGSS---LCGPKCSTPRVIVVLV 105
+ K + + I A F+ W PF+I+ SS +C S P ++
Sbjct: 150 ALHTPGGWKEAKSRLKFFLIGFVASFVYYWFPFYIFPALSSFSWVCWIAPSNPTFGLLFG 209
Query: 106 FWTGYFN----SSLNPLIYAYF 123
F+ + LI +
Sbjct: 210 GLGFTFDWSAILLGSGLIVPLW 231
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.139 0.430
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,698,858
Number of extensions: 688057
Number of successful extensions: 899
Number of sequences better than 10.0: 1
Number of HSP's gapped: 893
Number of HSP's successfully gapped: 39
Length of query: 151
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 63
Effective length of database: 7,034,450
Effective search space: 443170350
Effective search space used: 443170350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.6 bits)