RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3689
         (151 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 70.4 bits (171), Expect = 9e-16
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 55  PNMKRERKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSS 114
              K E++  R + I++ AFL CWLP+                P  + +   +    ++ 
Sbjct: 242 TTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPA-FFAKTSAV 300

Query: 115 LNPLIYAYFNREFRIAFKKTLQSCC 139
            NP+IY   N++FR     TL  CC
Sbjct: 301 YNPVIYIMMNKQFRNCMVTTL--CC 323


>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal
          domain {Thermus thermophilus [TaxId: 274]}
          Length = 250

 Score = 30.8 bits (69), Expect = 0.053
 Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 2/71 (2%)

Query: 15 AAALLNKHLQINGITASRLDLQDTSVELE--DGIMHPISDSTPNMKRERKAARTLGIIMS 72
          A       +++  + A  L+  D         GI+ P       ++ + +AA+       
Sbjct: 29 AGIKNRARVEVKWVDAESLEAADLEEAFRDVSGILVPGGFGVRGIEGKVRAAQYARERKI 88

Query: 73 AFLACWLPFFI 83
           +L   L   I
Sbjct: 89 PYLGICLGLQI 99


>d1dk0a_ d.35.1.1 (A:) Heme-binding protein A (HasA) {Serratia
           marcescens [TaxId: 615]}
          Length = 173

 Score = 24.4 bits (53), Expect = 5.3
 Identities = 6/29 (20%), Positives = 14/29 (48%)

Query: 20  NKHLQINGITASRLDLQDTSVELEDGIMH 48
              +Q+  ++   L+L     +  DG++H
Sbjct: 104 PYSIQVPDVSFGGLNLSSLQAQGHDGVVH 132


>d2co5a1 a.4.5.48 (A:5-93) STIV F93 {Sulfolobus turreted
          icosahedral virus [TaxId: 269145]}
          Length = 89

 Score = 23.7 bits (51), Expect = 5.6
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 13/61 (21%)

Query: 13 RVAAALLNKHLQINGITASRLD--------LQDTSVELEDGIMHPISDSTPNMK--RERK 62
          R+   ++ K L ING   SRL+        L+   +++ DG+++P+ DS  + K  RE +
Sbjct: 4  RINYYIILKVLVING---SRLEKKRLRSEILKRFDIDISDGVLYPLIDSLIDDKILREEE 60

Query: 63 A 63
          A
Sbjct: 61 A 61


>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium
           subunit QorM {Pseudomonas putida [TaxId: 303]}
          Length = 176

 Score = 23.6 bits (50), Expect = 9.3
 Identities = 11/57 (19%), Positives = 22/57 (38%)

Query: 61  RKAARTLGIIMSAFLACWLPFFIWYLGSSLCGPKCSTPRVIVVLVFWTGYFNSSLNP 117
           R      G +  A     +PF +  LG+++     +  R +    F  G++ + L  
Sbjct: 106 RNRGTLGGSLAHADAGAEMPFLMATLGATMYIASSAGVRSVSATDFMKGHYFTDLEA 162


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.139    0.430 

Gapped
Lambda     K      H
   0.267   0.0564    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 559,931
Number of extensions: 23755
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 8
Length of query: 151
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 73
Effective length of database: 1,336,656
Effective search space: 97575888
Effective search space used: 97575888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.0 bits)