BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy369
         (107 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2NMB|A Chain A, Dnumb Ptb Domain Complexed With A Phosphotyrosine
          Peptide, Nmr, Ensemble Of Structures
          Length = 160

 Score = 38.5 bits (88), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 31/50 (62%)

Query: 38 FLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPHSCILEVSDEGLRMVE 87
          F + YLG VE    +G  V  +A+  +RQ++ RP   +L VS +GLR+V+
Sbjct: 32 FSVKYLGCVEVFESRGMQVCEEALKVLRQSRRRPVRGLLHVSGDGLRVVD 81


>pdb|1DDM|A Chain A, Solution Structure Of The Numb Ptb Domain Complexed To A
           Nak Peptide
          Length = 135

 Score = 38.1 bits (87), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 35/63 (55%)

Query: 38  FLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPHSCILEVSDEGLRMVEKSRPTSSVSG 97
           F + YLG VE    +G  V  +A+  +RQ++ RP   +L VS +GLR+V+       V  
Sbjct: 17  FSVKYLGCVEVFESRGMQVCEEALKVLRQSRRRPVRGLLHVSGDGLRVVDDETKGLIVDQ 76

Query: 98  TVQ 100
           T++
Sbjct: 77  TIE 79


>pdb|1WJ1|A Chain A, Solution Structure Of Phosphotyrosine Interaction Domain
           Of Mouse Numb Protein
          Length = 156

 Score = 33.9 bits (76), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 33/63 (52%)

Query: 38  FLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPHSCILEVSDEGLRMVEKSRPTSSVSG 97
           F + YLG VE    +G  +   AV +++ T  +    +L VS +GLR+V++      V  
Sbjct: 28  FPVKYLGHVEVDESRGMHICEDAVKRLKATGKKAVKAVLWVSADGLRVVDEKTKDLIVDQ 87

Query: 98  TVQ 100
           T++
Sbjct: 88  TIE 90


>pdb|3F0W|A Chain A, Human Numb-Like Protein, Phosphotyrosine Interaction
           Domain
          Length = 168

 Score = 32.3 bits (72), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 31/63 (49%)

Query: 38  FLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPHSCILEVSDEGLRMVEKSRPTSSVSG 97
           F + YLG VE    +G  V   AV K++    +    +L VS +GLR+V+       V  
Sbjct: 44  FPVRYLGHVEVEESRGMHVCEDAVKKLKAMGRKSVKSVLWVSADGLRVVDDKTKDLLVDQ 103

Query: 98  TVQ 100
           T++
Sbjct: 104 TIE 106


>pdb|2FPF|A Chain A, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
 pdb|2FPF|B Chain B, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
 pdb|2FPF|C Chain C, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
 pdb|2FPF|D Chain D, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
          Length = 71

 Score = 31.2 bits (69), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 10/20 (50%), Positives = 16/20 (80%)

Query: 2  GVNLRTGRQGIFPSAYAVDV 21
            N+RTG +G+FP+ YA++V
Sbjct: 44 AYNMRTGARGVFPAYYAIEV 63


>pdb|2FPD|A Chain A, Sad Structure Determination: Crystal Structure Of The
          Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
          Protein
 pdb|2FPD|B Chain B, Sad Structure Determination: Crystal Structure Of The
          Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
          Protein
 pdb|2FPD|C Chain C, Sad Structure Determination: Crystal Structure Of The
          Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
          Protein
 pdb|2FPD|D Chain D, Sad Structure Determination: Crystal Structure Of The
          Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
          Protein
 pdb|2FPE|A Chain A, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
 pdb|2FPE|B Chain B, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
 pdb|2FPE|C Chain C, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
 pdb|2FPE|D Chain D, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
 pdb|2FPE|E Chain E, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
 pdb|2FPE|F Chain F, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
 pdb|2FPE|G Chain G, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
 pdb|2FPE|H Chain H, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
          Length = 62

 Score = 29.3 bits (64), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 2  GVNLRTGRQGIFPSAYAVDV 21
            N RTG +G+FP+ YA++V
Sbjct: 41 AYNXRTGARGVFPAYYAIEV 60


>pdb|2CUC|A Chain A, Solution Structure Of The Sh3 Domain Of The Mouse
          Hypothetical Protein Sh3rf2
          Length = 70

 Score = 28.9 bits (63), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 12/20 (60%), Positives = 15/20 (75%)

Query: 2  GVNLRTGRQGIFPSAYAVDV 21
          G++L TGR GIFPS Y + V
Sbjct: 45 GLSLLTGRTGIFPSDYVIPV 64


>pdb|2ZXJ|A Chain A, Crystal Structure Of Yycf Dna-Binding Domain From
          Staphylococcus Aureus
 pdb|2ZXJ|B Chain B, Crystal Structure Of Yycf Dna-Binding Domain From
          Staphylococcus Aureus
          Length = 120

 Score = 25.4 bits (54), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 12 IFPSAYAVDVEYEDLQTTTPKPKRERFLLGYLGSVETSAH 51
          I+P AY++    ED++ T  + +   +L  ++G V T  H
Sbjct: 21 IYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREH 60


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.130    0.368 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,959,296
Number of Sequences: 62578
Number of extensions: 104195
Number of successful extensions: 183
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 11
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)