Query psy369
Match_columns 107
No_of_seqs 55 out of 57
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 23:06:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy369.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/369hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3775|consensus 100.0 7.5E-40 1.6E-44 275.8 5.9 93 1-93 299-400 (482)
2 cd01212 JIP JNK-interacting pr 99.8 2.4E-19 5.3E-24 132.7 7.9 60 34-93 1-66 (148)
3 cd01268 Numb Numb Phosphotyros 99.6 3E-15 6.5E-20 110.5 6.9 57 35-91 13-69 (138)
4 cd01274 AIDA-1b AIDA-1b Phosph 99.5 1.8E-14 4E-19 103.9 6.7 56 36-91 2-60 (127)
5 cd01273 CED-6 CED-6 Phosphotyr 99.4 9.3E-13 2E-17 95.6 7.2 58 35-92 8-75 (142)
6 cd01267 CED6_AIDA1b Phosphotyr 99.4 1.5E-12 3.2E-17 92.5 7.5 57 36-92 2-65 (132)
7 cd01270 DYC-1 DYC-1 (DYB-1 bin 99.3 3.6E-12 7.8E-17 94.7 6.9 59 35-93 2-64 (140)
8 smart00462 PTB Phosphotyrosine 99.2 1.2E-10 2.6E-15 80.1 8.1 57 35-91 3-63 (134)
9 cd01216 Fe65 Fe65 Phosphotyros 99.2 1.1E-10 2.3E-15 84.0 7.0 57 36-92 2-60 (123)
10 PF00640 PID: Phosphotyrosine 99.1 2.6E-10 5.6E-15 78.5 6.2 54 38-91 1-71 (140)
11 cd00934 PTB Phosphotyrosine-bi 99.1 9.8E-10 2.1E-14 74.0 7.6 56 36-91 2-61 (123)
12 cd01213 tensin Tensin Phosphot 99.0 6.3E-10 1.4E-14 82.4 7.0 60 35-94 5-66 (138)
13 cd01271 Fe65_C Fe65 C-terminal 99.0 6.5E-10 1.4E-14 81.7 6.5 55 36-90 2-58 (124)
14 cd01215 Dab Disabled (Dab) Pho 98.9 2.8E-09 6.1E-14 79.3 6.3 58 34-91 11-72 (139)
15 cd01214 CG8312 CG8312 Phosphot 98.0 9.4E-06 2E-10 60.3 5.4 54 36-89 2-59 (133)
16 KOG3537|consensus 98.0 1.5E-05 3.2E-10 69.7 6.4 57 35-91 36-92 (543)
17 cd01209 SHC SHC phosphotyrosin 97.9 3.4E-05 7.4E-10 58.9 5.7 58 34-91 9-94 (160)
18 KOG3536|consensus 97.8 1.8E-05 3.9E-10 66.0 2.9 57 35-91 46-109 (321)
19 cd01208 X11 X11 Phosphotyrosin 97.3 0.00087 1.9E-08 51.1 6.9 58 34-91 3-69 (156)
20 PF14719 PID_2: Phosphotyrosin 97.0 0.0018 4E-08 50.0 6.1 53 37-89 1-56 (182)
21 KOG4458|consensus 96.9 0.00056 1.2E-08 46.8 1.9 34 34-67 32-65 (78)
22 PF08416 PTB: Phosphotyrosine- 96.4 0.016 3.5E-07 41.9 6.6 62 37-98 1-66 (131)
23 cd01211 GAPCenA GAPCenA Phosph 94.8 0.11 2.4E-06 38.6 6.0 53 39-91 5-61 (125)
24 KOG1930|consensus 93.5 0.2 4.3E-06 44.1 5.9 66 35-100 344-412 (483)
25 cd01269 PLX Pollux (PLX) Phosp 92.2 0.79 1.7E-05 34.4 6.7 56 36-91 2-62 (129)
26 PF14604 SH3_9: Variant SH3 do 91.4 0.03 6.6E-07 33.9 -1.2 12 7-18 37-48 (49)
27 PF10480 ICAP-1_inte_bdg: Beta 91.3 0.62 1.3E-05 37.1 5.7 56 34-89 59-125 (200)
28 KOG3535|consensus 81.4 3.3 7.2E-05 37.0 5.2 57 34-90 47-110 (557)
29 smart00326 SH3 Src homology 3 77.7 0.7 1.5E-05 26.1 -0.1 18 2-20 40-57 (58)
30 KOG3697|consensus 77.3 3.5 7.5E-05 35.2 3.9 17 35-51 16-32 (345)
31 PF02834 LigT_PEase: LigT like 70.3 6.1 0.00013 25.1 3.0 46 35-88 34-79 (87)
32 KOG4225|consensus 67.3 1.9 4.2E-05 38.2 0.2 21 2-22 342-362 (489)
33 PF07653 SH3_2: Variant SH3 do 65.8 1.2 2.6E-05 26.9 -1.0 14 7-20 41-54 (55)
34 cd00174 SH3 Src homology 3 dom 60.5 2.6 5.7E-05 23.5 -0.1 16 2-18 37-52 (54)
35 cd01217 CG12581 CG12581 Phosph 58.2 20 0.00043 27.8 4.2 51 37-90 3-61 (158)
36 KOG3523|consensus 53.3 2.6 5.7E-05 38.8 -1.4 24 2-25 646-669 (695)
37 KOG4225|consensus 42.3 11 0.00025 33.5 0.8 21 3-23 267-287 (489)
38 COG1514 LigT 2'-5' RNA ligase 41.8 29 0.00062 26.3 2.9 30 35-67 37-66 (180)
39 cd03812 GT1_CapH_like This fam 41.6 33 0.00071 25.6 3.1 31 35-67 190-220 (358)
40 PF04327 DUF464: Protein of un 40.3 30 0.00065 23.7 2.5 23 45-67 15-42 (103)
41 cd06437 CESA_CaSu_A2 Cellulose 40.0 76 0.0016 22.9 4.7 29 45-73 4-32 (232)
42 PF06483 ChiC: Chitinase C; I 37.1 77 0.0017 25.0 4.6 51 50-103 2-62 (180)
43 cd01780 PLC_epsilon_RA Ubiquit 35.8 52 0.0011 23.5 3.2 35 51-85 23-58 (93)
44 smart00314 RA Ras association 33.7 73 0.0016 20.5 3.5 33 50-82 25-57 (90)
45 PF14436 EndoU_bacteria: Bacte 31.5 1.8E+02 0.0039 20.1 6.5 50 41-90 63-116 (128)
46 PF13527 Acetyltransf_9: Acety 31.1 1.2E+02 0.0025 19.7 4.2 32 35-66 67-99 (127)
47 PRK14553 hypothetical protein; 30.8 10 0.00023 26.4 -1.0 17 51-67 26-42 (108)
48 cd06439 CESA_like_1 CESA_like_ 28.4 1.7E+02 0.0038 21.1 5.0 37 44-80 31-67 (251)
49 KOG3316|consensus 28.4 21 0.00047 27.7 0.3 9 4-12 88-96 (163)
50 PRK15124 2'-5' RNA ligase; Pro 27.3 42 0.00092 24.5 1.7 26 36-64 42-67 (176)
51 cd03820 GT1_amsD_like This fam 26.4 2.2E+02 0.0047 20.2 5.1 31 34-66 175-205 (348)
52 cd05844 GT1_like_7 Glycosyltra 25.7 2E+02 0.0044 21.6 5.1 31 35-67 186-216 (367)
53 cd03811 GT1_WabH_like This fam 25.6 74 0.0016 22.6 2.6 31 35-67 187-217 (353)
54 PF03894 XFP: D-xylulose 5-pho 25.4 24 0.00052 27.7 0.0 14 7-20 81-94 (179)
55 PF13692 Glyco_trans_1_4: Glyc 24.3 1.1E+02 0.0024 19.8 3.1 29 38-68 3-32 (135)
56 cd04184 GT2_RfbC_Mx_like Myxoc 24.1 2.4E+02 0.0053 19.3 4.9 37 44-82 3-40 (202)
57 cd03801 GT1_YqgM_like This fam 23.4 87 0.0019 22.2 2.6 33 34-68 196-228 (374)
58 TIGR03111 glyc2_xrt_Gpos1 puta 23.2 1.9E+02 0.0042 24.0 5.0 35 44-78 51-85 (439)
59 KOG2528|consensus 22.3 40 0.00087 30.2 0.9 17 2-19 41-57 (490)
60 PF07238 PilZ: PilZ domain; I 22.1 1.8E+02 0.0038 17.7 3.6 29 74-104 28-56 (102)
61 COG2315 MmcQ Uncharacterized p 21.7 30 0.00065 25.2 -0.0 13 5-17 60-72 (118)
62 cd06421 CESA_CelA_like CESA_Ce 21.4 3E+02 0.0065 19.3 5.1 38 45-82 4-42 (234)
63 cd06433 GT_2_WfgS_like WfgS an 21.3 2.2E+02 0.0048 19.0 4.2 27 45-71 1-27 (202)
64 PRK13679 hypothetical protein; 20.7 1E+02 0.0023 22.2 2.6 30 35-67 32-61 (168)
65 cd03821 GT1_Bme6_like This fam 20.5 1.1E+02 0.0024 22.1 2.7 32 34-67 200-231 (375)
66 smart00596 PRE_C2HC PRE_C2HC d 20.4 1.2E+02 0.0025 20.5 2.6 44 3-55 19-67 (69)
No 1
>KOG3775|consensus
Probab=100.00 E-value=7.5e-40 Score=275.75 Aligned_cols=93 Identities=43% Similarity=0.670 Sum_probs=86.0
Q ss_pred CcccccCCCccccceeeeEEeeccCCCCCCCC---CccceeeeeeeeeEEeeccCCchHHHHHHHHHHhcC------CCC
Q psy369 1 MGVNLRTGRQGIFPSAYAVDVEYEDLQTTTPK---PKRERFLLGYLGSVETSAHKGNAVICQAVHKIRQTQ------HRP 71 (107)
Q Consensus 1 ~G~NmRTG~~GIFPa~ya~ev~~~~~~~~~~~---~~~e~f~lkfLGSVEVp~hKGndVlc~AmqKI~~~r------~pP 71 (107)
.|+|||||+||||||+||+||++++++..+.+ .|+|+|.|+||||||||+||||||||||||||++++ +||
T Consensus 299 ~G~NlRTG~~GIFPA~ya~evd~~eed~lg~l~~~~~~erf~l~~LgSVEv~~HKGngVlcqAm~KI~t~ykns~~~~~p 378 (482)
T KOG3775|consen 299 EGFNLRTGERGIFPAFYAHEVDGPEEDLLGSLRSPCWVERFDLQFLGSVEVPCHKGNGVLCQAMQKIATAYKNSVHLRPP 378 (482)
T ss_pred ccccccccccccccceeEEecCCchhhhhhccCCccchhheeeeeeeeeEeecccCccHHHHHHHHHHHHhcCCccccCc
Confidence 49999999999999999999999998888654 578999999999999999999999999999999884 799
Q ss_pred ceeEEEEeccceEEEEeeCCCC
Q psy369 72 HSCILEVSDEGLRMVEKSRPTS 93 (107)
Q Consensus 72 ~~c~LEIS~~Gik~v~~~~k~~ 93 (107)
++|+||||+||||++++..++.
T Consensus 379 ~s~~lEislRgV~~s~k~~~~~ 400 (482)
T KOG3775|consen 379 ASCVLEISLRGVKLSLKGGGPE 400 (482)
T ss_pred chhhhhhhcceeEeecCCCCcc
Confidence 9999999999999999877654
No 2
>cd01212 JIP JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JIP is a mitogen-activated protein kinase scaffold protein. JIP consists of a C-terminal SH3 domain, followed by a PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=99.79 E-value=2.4e-19 Score=132.72 Aligned_cols=60 Identities=63% Similarity=1.063 Sum_probs=55.1
Q ss_pred ccceeeeeeeeeEEeeccCCchHHHHHHHHHHhcC------CCCceeEEEEeccceEEEEeeCCCC
Q psy369 34 KRERFLLGYLGSVETSAHKGNAVICQAVHKIRQTQ------HRPHSCILEVSDEGLRMVEKSRPTS 93 (107)
Q Consensus 34 ~~e~f~lkfLGSVEVp~hKGndVlc~AmqKI~~~r------~pP~~c~LEIS~~Gik~v~~~~k~~ 93 (107)
|+|+|.++|||||||+.+||++|+|+|||||+..+ ++|++|+|+||.+||+|+|..+++.
T Consensus 1 ~~~~f~vkyLGsveV~~~kG~~v~~~A~rki~~~~k~~~~~~~~~~v~L~VS~~Girl~D~~t~~~ 66 (148)
T cd01212 1 KKERFLLGYLGSVEVLAHKGNGVLCQAMRKIVGEYKNSEESPTPQTCILEISDRGLRMVDRSGPNK 66 (148)
T ss_pred CCceEEeEecceEEecCCCCcHHHHHHHHHHHHHHHhhccCCCCcEEEEEEecCcEEEEecCCCcc
Confidence 68999999999999999999999999999998663 5789999999999999999988753
No 3
>cd01268 Numb Numb Phosphotyrosine-binding (PTB) domain. Numb Phosphotyrosine-binding (PTB) domain. Numb is a membrane associated adaptor protein, which is a determinant of asymmetric cell division. Numb has an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=99.59 E-value=3e-15 Score=110.48 Aligned_cols=57 Identities=30% Similarity=0.554 Sum_probs=53.5
Q ss_pred cceeeeeeeeeEEeeccCCchHHHHHHHHHHhcCCCCceeEEEEeccceEEEEeeCC
Q psy369 35 RERFLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPHSCILEVSDEGLRMVEKSRP 91 (107)
Q Consensus 35 ~e~f~lkfLGSVEVp~hKGndVlc~AmqKI~~~r~pP~~c~LEIS~~Gik~v~~~~k 91 (107)
.-.|.+|||||+||+.++|++|+++||+|+...+..|+.|+|+||.+||+|+|..++
T Consensus 13 ~~~f~vKyLG~veV~~~rG~~v~~~A~~klk~~~~k~~kv~L~VS~~Gi~vvd~~Tk 69 (138)
T cd01268 13 TCSFPVKYLGHVEVDESRGMQVCEDALKRLKASRRKPVKAVLWVSGDGLRVVDEKTK 69 (138)
T ss_pred ceeEEeEecceEEccCcCCChHHHHHHHHHHhhccCCCEEEEEEecCcEEEEecCCC
Confidence 468999999999999999999999999999988888899999999999999998665
No 4
>cd01274 AIDA-1b AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b is an amyloid-beta precursor protein interacting protein. It consists of ankyrin repeats, a SAM domain and a C-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=99.53 E-value=1.8e-14 Score=103.93 Aligned_cols=56 Identities=20% Similarity=0.364 Sum_probs=51.1
Q ss_pred ceeeeeeeeeEEeeccCCchHHHHHHHHHHhcC---CCCceeEEEEeccceEEEEeeCC
Q psy369 36 ERFLLGYLGSVETSAHKGNAVICQAVHKIRQTQ---HRPHSCILEVSDEGLRMVEKSRP 91 (107)
Q Consensus 36 e~f~lkfLGSVEVp~hKGndVlc~AmqKI~~~r---~pP~~c~LEIS~~Gik~v~~~~k 91 (107)
.+|.++||||+||+.++|++++++||+||.... .+|+.|.|.||.+||+++|..++
T Consensus 2 v~f~akyLGs~eV~~~~G~~~~~~Am~kik~~~~~~~k~~~V~L~IS~~Gv~v~d~~tk 60 (127)
T cd01274 2 VVYRAHYLGSLEIGELEGTDSTHAAMTKIKESIIDWETIPRVTLDLTCNGVKFIDETFK 60 (127)
T ss_pred cEEEEEccceEEccCCCCcHHHHHHHHHHHHhhhccCCCCEEEEEEeCCeEEEEECCCC
Confidence 479999999999999999999999999998664 57889999999999999998765
No 5
>cd01273 CED-6 CED-6 Phosphotyrosine-binding (PTB) domain. CED-6 Phosphotyrosine-binding (PTB) domain. CED6 is an adaptor protein involved in the engulfment of apoptotic cells. It has a C-terminal PTB domain, which can bind to NPXY motifs. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=99.40 E-value=9.3e-13 Score=95.57 Aligned_cols=58 Identities=22% Similarity=0.437 Sum_probs=50.8
Q ss_pred cceeeeeeeeeEEeeccCCchHHHHHHHHHHhcC----------CCCceeEEEEeccceEEEEeeCCC
Q psy369 35 RERFLLGYLGSVETSAHKGNAVICQAVHKIRQTQ----------HRPHSCILEVSDEGLRMVEKSRPT 92 (107)
Q Consensus 35 ~e~f~lkfLGSVEVp~hKGndVlc~AmqKI~~~r----------~pP~~c~LEIS~~Gik~v~~~~k~ 92 (107)
...|.++||||+||+.++|++++++||+||..++ .+++.|.|+||.+||+|+|..++.
T Consensus 8 ~v~f~vkyLG~~eV~~~~g~~v~~eAi~ki~~a~~~k~~~~~~~~k~~~V~L~IS~~GI~v~d~~t~~ 75 (142)
T cd01273 8 HVEYVAKFLGCVEVDQPKGSEVVREAIRKLRFARDLKKSEQTRTAKLQKVEIRISIDGVIIAEPKTKA 75 (142)
T ss_pred ceEEEEEEeeeEEecCCCCchHHHHHHHHHHHHHhhhhccccccccCcEEEEEEECCeEEEEEcCCCc
Confidence 4799999999999999999999999999996432 356899999999999999987653
No 6
>cd01267 CED6_AIDA1b Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=99.39 E-value=1.5e-12 Score=92.54 Aligned_cols=57 Identities=23% Similarity=0.422 Sum_probs=50.8
Q ss_pred ceeeeeeeeeEEeeccCCchHHHHHHHHHHhcC-------CCCceeEEEEeccceEEEEeeCCC
Q psy369 36 ERFLLGYLGSVETSAHKGNAVICQAVHKIRQTQ-------HRPHSCILEVSDEGLRMVEKSRPT 92 (107)
Q Consensus 36 e~f~lkfLGSVEVp~hKGndVlc~AmqKI~~~r-------~pP~~c~LEIS~~Gik~v~~~~k~ 92 (107)
..|.++||||+||+.++|++++..||+++..++ .+++.|.|+||.+||+|+|..++.
T Consensus 2 v~f~vkyLGs~~V~~~~g~~~~~~Ai~~l~~~~~~~~~~~~k~~~V~L~IS~~gi~i~d~~t~~ 65 (132)
T cd01267 2 VVYRAKFLGSLEIGKLKGTEVAREAIRKLKFSRILKTAEWEKIPKVELDISIKGVKIIDPKTKT 65 (132)
T ss_pred cEEEEEEEEEEEecCCCChHHHHHHHHHHHhhhhcchhccCCCCeEEEEEEcCcEEEEeCCCCc
Confidence 479999999999999999999999999998654 256789999999999999987753
No 7
>cd01270 DYC-1 DYC-1 (DYB-1 binding and Capon related) Phosphotyrosine-binding (PTB) domain. DYC-1 (DYB-1 binding and Capon related) Phosphotyrosine-binding (PTB) domain. DYC-1 contains an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domains of both SHC and IRS-1, for example, bind to a NPXpY sequence. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=99.33 E-value=3.6e-12 Score=94.74 Aligned_cols=59 Identities=25% Similarity=0.358 Sum_probs=52.5
Q ss_pred cceeeeeeeeeEEeeccCCchHHHHHHHHHHhc----CCCCceeEEEEeccceEEEEeeCCCC
Q psy369 35 RERFLLGYLGSVETSAHKGNAVICQAVHKIRQT----QHRPHSCILEVSDEGLRMVEKSRPTS 93 (107)
Q Consensus 35 ~e~f~lkfLGSVEVp~hKGndVlc~AmqKI~~~----r~pP~~c~LEIS~~Gik~v~~~~k~~ 93 (107)
...|.++||||+||+..+|++++++||++|... ..++++++|.||.+||+++|+++|+.
T Consensus 2 GitF~vKYlG~~eV~~~~g~~~~~~A~rrir~~~ka~~~Kk~kV~l~VS~~Gv~v~d~k~~~~ 64 (140)
T cd01270 2 GITFEAKYVGSEEVPRPNTRAEIVAAMRRIRYEFKAQNIKKRKVTIHVSVDGVKVVLKKKKRK 64 (140)
T ss_pred ceEEEEEEcceEEecCCCCcCHHHHHHHHHHHHHHHhCCCceeEEEEEecCcEEEEecccccc
Confidence 468999999999999999999999999999854 35667899999999999999987764
No 8
>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain. PTB/PI domain structure similar to those of pleckstrin homology (PH) and IRS-1-like PTB domains.
Probab=99.19 E-value=1.2e-10 Score=80.08 Aligned_cols=57 Identities=30% Similarity=0.615 Sum_probs=51.9
Q ss_pred cceeeeeeeeeEEeeccCCchHHHHHHHHHHhc----CCCCceeEEEEeccceEEEEeeCC
Q psy369 35 RERFLLGYLGSVETSAHKGNAVICQAVHKIRQT----QHRPHSCILEVSDEGLRMVEKSRP 91 (107)
Q Consensus 35 ~e~f~lkfLGSVEVp~hKGndVlc~AmqKI~~~----r~pP~~c~LEIS~~Gik~v~~~~k 91 (107)
...|.++||||++|...+|.+++.+||+++... ...++.+.|+||.+||+++|..++
T Consensus 3 ~~~f~v~YLGs~~v~~~~g~~~~~~ai~~l~~~~~~~~~~~~~v~l~vs~~gv~v~~~~~~ 63 (134)
T smart00462 3 GVSFRVKYLGSVEVPEARGLQVVQEAIRKLRAAQGSEKKEPQKVILSISSRGVKLIDEDTK 63 (134)
T ss_pred ceEEEEEEEEEEEecCCCCcHHHHHHHHHHHHhhhhccCCCCEEEEEEECCcEEEEECCCC
Confidence 568999999999999999999999999999974 367789999999999999998765
No 9
>cd01216 Fe65 Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=99.16 E-value=1.1e-10 Score=84.00 Aligned_cols=57 Identities=16% Similarity=0.321 Sum_probs=50.0
Q ss_pred ceeeeeeeeeEEeeccCCchHHHHHHHHHHhcCCCC--ceeEEEEeccceEEEEeeCCC
Q psy369 36 ERFLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRP--HSCILEVSDEGLRMVEKSRPT 92 (107)
Q Consensus 36 e~f~lkfLGSVEVp~hKGndVlc~AmqKI~~~r~pP--~~c~LEIS~~Gik~v~~~~k~ 92 (107)
..|.++||||+||+.++|.+|+.+||+++...+... ..+.|.||..||+++|..++.
T Consensus 2 ~~F~VkyLG~~eV~~~~g~~vv~~ai~~L~~~~~~~~~~~v~l~Vs~~~l~l~d~~t~~ 60 (123)
T cd01216 2 KVFAVRSLGWVEVAEEDGSEALNKAIDDLSSCSNWEDWKDLNMDLAPSTLSLIDPDNLT 60 (123)
T ss_pred cEEEEEeeeeEEECCCCCHHHHHHHHHHHHhccccccCeEEEEEEecCcEEEEcCCCCe
Confidence 479999999999999999999999999998775433 468899999999999987653
No 10
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains.; InterPro: IPR006020 The PI domain has a similar structure to the insulin receptor substrate-1 PTB domain, a 7-stranded beta-sandwich, capped by a C-terminal helix. However, the PI domain contains an additional short N-terminal helix and a large insertion between strands 1 and 2, which forms a helix and 2 long connecting loops. The substrate peptide fits into a surface cleft formed from the C-terminal helix and strand 5 [].; GO: 0005515 protein binding; PDB: 1WGU_A 2YT0_A 2YT1_A 2YSZ_A 2ROZ_B 3SO6_A 2DYQ_A 1AQC_A 1X11_B 1WJ1_A ....
Probab=99.09 E-value=2.6e-10 Score=78.53 Aligned_cols=54 Identities=30% Similarity=0.682 Sum_probs=48.8
Q ss_pred eeeeeeeeEEeecc------CCchHHHHHHHHHHhc-----------CCCCceeEEEEeccceEEEEeeCC
Q psy369 38 FLLGYLGSVETSAH------KGNAVICQAVHKIRQT-----------QHRPHSCILEVSDEGLRMVEKSRP 91 (107)
Q Consensus 38 f~lkfLGSVEVp~h------KGndVlc~AmqKI~~~-----------r~pP~~c~LEIS~~Gik~v~~~~k 91 (107)
|.++||||++|+.+ .|.+++..||+++... ..++..+.|.||..||+++|..++
T Consensus 1 F~vkYLGs~~V~~~~~~~~~~g~~~v~~ai~~~~~~~~~~~~~~~~~~~~~~~V~l~vs~~gI~v~~~~t~ 71 (140)
T PF00640_consen 1 FEVKYLGSVEVSSSRRGDKSRGSDVVREAIQRLKAEKIAKSKKSKSNKKKPQKVTLNVSSDGIKVIDPDTG 71 (140)
T ss_dssp EEEEEEEEEEESSSSSTCHHHHHHHHHHHHHHHHHHCCCSHHHHHTTTSTSEEEEEEEETTEEEEEETTTT
T ss_pred CEEEEEEEEEECCccCCCcchhHHHHHHHHHHHHhhhhhhhhccccccccCeEEEEEEcCCeEEEecCccc
Confidence 88999999999999 7999999999999976 367789999999999999997664
No 11
>cd00934 PTB Phosphotyrosine-binding (PTB) domain. Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=99.05 E-value=9.8e-10 Score=73.96 Aligned_cols=56 Identities=29% Similarity=0.581 Sum_probs=51.1
Q ss_pred ceeeeeeeeeEEeeccCCchHHHHHHHHHHhcC----CCCceeEEEEeccceEEEEeeCC
Q psy369 36 ERFLLGYLGSVETSAHKGNAVICQAVHKIRQTQ----HRPHSCILEVSDEGLRMVEKSRP 91 (107)
Q Consensus 36 e~f~lkfLGSVEVp~hKGndVlc~AmqKI~~~r----~pP~~c~LEIS~~Gik~v~~~~k 91 (107)
..|.++||||++|+..+|.+++.+||+++.... ..++.+.|+||-.||+|.|..++
T Consensus 2 ~~f~v~ylG~~~v~~~~g~~~~~~ai~~l~~~~~~~~~~~~~v~l~vs~~gv~l~d~~~~ 61 (123)
T cd00934 2 ISFNVKYLGSVEVPEPRGSQVVRDAIRKLKAASKQGGEKGQKVILSVSSDGVKLIDPKTK 61 (123)
T ss_pred cEEEEEEEEEEEecCCCCchHHHHHHHHHHHhhhhcccCCCEEEEEEEcCcEEEEeCCCC
Confidence 579999999999999999999999999998764 56789999999999999998764
No 12
>cd01213 tensin Tensin Phosphotyrosine-binding (PTB) domain. Tensin Phosphotyrosine-binding (PTB) domain. Tensin is a a focal adhesion protein, which contains a C-terminal SH2 domain followed by a PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=99.05 E-value=6.3e-10 Score=82.41 Aligned_cols=60 Identities=23% Similarity=0.339 Sum_probs=51.1
Q ss_pred cceeeeeeeeeEEeeccCCchHHHHHHHHHHhcCCC--CceeEEEEeccceEEEEeeCCCCC
Q psy369 35 RERFLLGYLGSVETSAHKGNAVICQAVHKIRQTQHR--PHSCILEVSDEGLRMVEKSRPTSS 94 (107)
Q Consensus 35 ~e~f~lkfLGSVEVp~hKGndVlc~AmqKI~~~r~p--P~~c~LEIS~~Gik~v~~~~k~~~ 94 (107)
..-+++.|||||||..++|+++++.||+++...... |..|.|.||.+||+|+|..+|.++
T Consensus 5 gaa~nv~yLgS~evesltg~~av~kAv~~~l~~~~~~~~t~vh~kVS~qGItLtDn~rk~ff 66 (138)
T cd01213 5 GAACNVLYLGSVDTESLTGNEAIKKAIAQCSGQAPDPQATEVHFKVSSQGITLTDNTRKKFF 66 (138)
T ss_pred ccccceeeeeeEeeccccCcHHHHHHHHHHHhcCCCCCceEEEEEEEcCCeeeeccccceee
Confidence 346789999999999999999999999999965433 457899999999999998776544
No 13
>cd01271 Fe65_C Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=99.03 E-value=6.5e-10 Score=81.71 Aligned_cols=55 Identities=15% Similarity=0.292 Sum_probs=48.1
Q ss_pred ceeeeeeeeeEEeeccCCchHHHHHHHHHHhcC--CCCceeEEEEeccceEEEEeeC
Q psy369 36 ERFLLGYLGSVETSAHKGNAVICQAVHKIRQTQ--HRPHSCILEVSDEGLRMVEKSR 90 (107)
Q Consensus 36 e~f~lkfLGSVEVp~hKGndVlc~AmqKI~~~r--~pP~~c~LEIS~~Gik~v~~~~ 90 (107)
.+|.++||||++|+.++|+|||++||+++...+ ....++.+.|+..+|.+.+.+.
T Consensus 2 ~~f~~~yLG~~~V~~p~Gmdvln~AI~~l~~~~~~~~w~~V~vsvaps~v~v~~~~~ 58 (124)
T cd01271 2 KVFRVQYLGMLPVDKPTGMEILNSAIDNLMSSSNKEDWLSVNVNVAPSTITVISEKN 58 (124)
T ss_pred cEEEEEEeccEeecCCccHHHHHHHHHHHHhcCCcccCceEEEEeCCceEEEEccCc
Confidence 479999999999999999999999999999774 2335788999999999998654
No 14
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain. Disabled (Dab) Phosphotyrosine-binding domain. Dab is a cystosolic adaptor protein, which binds to the cytoplasmic tails of lipoprotein receptors, such as ApoER2 and VLDLR, via its PTB domain. The dab PTB domain has a preference for unphosphorylated tyrosine within an NPxY motif. Additionally, the Dab PTB domain, which is structurally similar to PH domains, binds to phosphatidlyinositol phosphate 4,5 bisphosphate in a manner characteristic of phosphoinositide binding PH domains.
Probab=98.92 E-value=2.8e-09 Score=79.31 Aligned_cols=58 Identities=14% Similarity=0.321 Sum_probs=52.3
Q ss_pred ccceeeeeeeeeEEeeccCCchHHHHHHHHHHhc----CCCCceeEEEEeccceEEEEeeCC
Q psy369 34 KRERFLLGYLGSVETSAHKGNAVICQAVHKIRQT----QHRPHSCILEVSDEGLRMVEKSRP 91 (107)
Q Consensus 34 ~~e~f~lkfLGSVEVp~hKGndVlc~AmqKI~~~----r~pP~~c~LEIS~~Gik~v~~~~k 91 (107)
....|.+||||++||+..+|..|..+||+++... +...+.+.|-||.+||+++|.+++
T Consensus 11 ~gv~f~aKylG~~eV~e~RG~~v~~~Ai~klk~~~k~~~~kk~kV~L~IS~dGi~v~D~~T~ 72 (139)
T cd01215 11 NGVSYKAKLIGIQEVDKARGDAMCAEAMRKAKSIIKGAGAHKTRITLQINIDGIKVLDEKTG 72 (139)
T ss_pred CcEEEEEEecccEecccCCchHHHHHHHHHHHHHhhhhccccceEEEEEccCCEEEEcCCCC
Confidence 5789999999999999999999999999999754 456789999999999999998765
No 15
>cd01214 CG8312 CG8312 Phosphotyrosine-binding (PTB) domain. CG8312 Phosphotyrosine-binding (PTB) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=98.05 E-value=9.4e-06 Score=60.29 Aligned_cols=54 Identities=28% Similarity=0.365 Sum_probs=48.3
Q ss_pred ceeeeeeeeeEEeeccCCchHHHHHHHHHHhcC----CCCceeEEEEeccceEEEEee
Q psy369 36 ERFLLGYLGSVETSAHKGNAVICQAVHKIRQTQ----HRPHSCILEVSDEGLRMVEKS 89 (107)
Q Consensus 36 e~f~lkfLGSVEVp~hKGndVlc~AmqKI~~~r----~pP~~c~LEIS~~Gik~v~~~ 89 (107)
..|.|+|||++-|...+|.+..-+|+++|-.+. .+.+.+.|+||-+||+|.+..
T Consensus 2 ~ty~VkYLG~~~t~~~~Geg~t~~av~~I~~~~~~~~k~~~km~L~Vsp~GI~~~~~~ 59 (133)
T cd01214 2 PTYTVLYLGNVLTIQARGEGCTEKALGKIWSKYEAGARQDTKMKLTVSASGLKAVTAQ 59 (133)
T ss_pred CcEEEEEcccccccccCCCccHHHHHHHHHHHHhhcccccceEEEEEcCCceEEEecc
Confidence 479999999999999999999999999998662 466889999999999999865
No 16
>KOG3537|consensus
Probab=97.99 E-value=1.5e-05 Score=69.69 Aligned_cols=57 Identities=30% Similarity=0.505 Sum_probs=51.5
Q ss_pred cceeeeeeeeeEEeeccCCchHHHHHHHHHHhcCCCCceeEEEEeccceEEEEeeCC
Q psy369 35 RERFLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPHSCILEVSDEGLRMVEKSRP 91 (107)
Q Consensus 35 ~e~f~lkfLGSVEVp~hKGndVlc~AmqKI~~~r~pP~~c~LEIS~~Gik~v~~~~k 91 (107)
.-.|.|||||+|||-...|-.|--.|++++...|+.|-.-+|-||-+|+++||.++|
T Consensus 36 tCsF~VkYLG~VEV~ESRGM~vCE~AlK~Lkas~rk~VkavL~VS~DGLRVVD~~tk 92 (543)
T KOG3537|consen 36 TCSFPVKYLGHVEVFESRGMQVCEDALKVLKASRRKPVKAVLWVSGDGLRVVDDKTK 92 (543)
T ss_pred eeeeeeeeeeeEEEecccCcHHHHHHHHHHHHhccCcceeEEEEccCceEEeccCcc
Confidence 468999999999999999999887899888888888877889999999999998875
No 17
>cd01209 SHC SHC phosphotyrosine-binding (PTB) domain. SHC phosphotyrosine-binding (PTB) domain. SHC is a substrate for receptor tyrosine kinases, which can interact with phosphoproteins at NPXY motifs. SHC contains an PTB domain followed by an SH2 domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=97.87 E-value=3.4e-05 Score=58.91 Aligned_cols=58 Identities=16% Similarity=0.271 Sum_probs=48.4
Q ss_pred ccceeeeeeeeeEEeecc-------CCchHHHHHHHHHHhcC---C------------------CCceeEEEEeccceEE
Q psy369 34 KRERFLLGYLGSVETSAH-------KGNAVICQAVHKIRQTQ---H------------------RPHSCILEVSDEGLRM 85 (107)
Q Consensus 34 ~~e~f~lkfLGSVEVp~h-------KGndVlc~AmqKI~~~r---~------------------pP~~c~LEIS~~Gik~ 85 (107)
..-.|.++||||+||+.. ++..|...||+++..+. . +.-.+.|-||.+||++
T Consensus 9 ~GV~y~vrYlG~~eV~~Smr~~~~~~Rtqv~rEaI~rV~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~V~l~IS~~~v~~ 88 (160)
T cd01209 9 PGVSYLVRYMGCVEVLQSMRALDFETRTQVTRECISLVCEAVGGAKAATERNLNSILGRSNLKFAGMPITINVSSSSLNL 88 (160)
T ss_pred CCcEEEEEEeeEEeehhhcccCCcchhHHHHHHHHHHHHhccccccccccccccccccCccccccCceEEEEEEeeEEEE
Confidence 367899999999999976 99999999999998552 1 1245899999999999
Q ss_pred EEeeCC
Q psy369 86 VEKSRP 91 (107)
Q Consensus 86 v~~~~k 91 (107)
.+..++
T Consensus 89 ~~~~t~ 94 (160)
T cd01209 89 MAQDCK 94 (160)
T ss_pred eccCch
Confidence 987654
No 18
>KOG3536|consensus
Probab=97.76 E-value=1.8e-05 Score=66.01 Aligned_cols=57 Identities=23% Similarity=0.364 Sum_probs=50.2
Q ss_pred cceeeeeeeeeEEeeccCCchHHHHHHHHHHhcC-------CCCceeEEEEeccceEEEEeeCC
Q psy369 35 RERFLLGYLGSVETSAHKGNAVICQAVHKIRQTQ-------HRPHSCILEVSDEGLRMVEKSRP 91 (107)
Q Consensus 35 ~e~f~lkfLGSVEVp~hKGndVlc~AmqKI~~~r-------~pP~~c~LEIS~~Gik~v~~~~k 91 (107)
...|.++|||.+||+..||.||...|+|+|..++ ..-+.+++.||.+||.|-+-+++
T Consensus 46 ~v~y~~kflg~~ev~qpkG~~vv~~a~r~~rr~~~~kkseg~k~~kvE~~Isi~gviI~~~~T~ 109 (321)
T KOG3536|consen 46 HVPYSAKFLGMTEVEQPKGTDVVREAIRAIRRTNPFKKSEGEKLQKVELSISIQGVIIRDLGTM 109 (321)
T ss_pred cHHHHHHhcccccccCCCccHHHHHHHHhhhhcccccccccccccceeeeeccceeEEeecccc
Confidence 4679999999999999999999999999998664 34478999999999999997664
No 19
>cd01208 X11 X11 Phosphotyrosine-binding (PTB) domain. X11 Phosphotyrosine-binding (PTB) domain. The neuronal protein X11 has a PTB domain followed by two PDZ domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether. X11 binds to the cytoplasmic domain of the beta-amyloid precursor protein (beta-APP) and does not require the substrate to be tyrosine-phosphorylated for binding.
Probab=97.34 E-value=0.00087 Score=51.13 Aligned_cols=58 Identities=21% Similarity=0.239 Sum_probs=43.0
Q ss_pred ccceeeeeeeeeEEeeccCCch------HHHHHHHHHHhc---CCCCceeEEEEeccceEEEEeeCC
Q psy369 34 KRERFLLGYLGSVETSAHKGNA------VICQAVHKIRQT---QHRPHSCILEVSDEGLRMVEKSRP 91 (107)
Q Consensus 34 ~~e~f~lkfLGSVEVp~hKGnd------Vlc~AmqKI~~~---r~pP~~c~LEIS~~Gik~v~~~~k 91 (107)
....|.++||||.|+...+.-+ +-..||.+|-.. +.|-.+++|-||.+||++.+..++
T Consensus 3 ~Gv~f~a~YlG~t~~~~~~~~~~~tR~~~a~Eai~rik~~eG~~~~~t~V~L~IS~~gV~v~~~~tk 69 (156)
T cd01208 3 EGVLFRARYLGSTQLLCEKTPSKNVRMXQAQEAVSRIKAPEGESQPSTEVDLFISTEKIMVLNTDLQ 69 (156)
T ss_pred CceEEEEEeeceeeeeecCCCChhhhHHHHHHHHHHHhccccCCCCCcEEEEEEEeCeEEEEecCcc
Confidence 3568999999999977664322 233578888644 245578999999999999987654
No 20
>PF14719 PID_2: Phosphotyrosine interaction domain (PTB/PID)
Probab=97.05 E-value=0.0018 Score=50.02 Aligned_cols=53 Identities=28% Similarity=0.416 Sum_probs=46.7
Q ss_pred eeeeeeeeeEEeeccCCchHHHHHHHHHHhcC---CCCceeEEEEeccceEEEEee
Q psy369 37 RFLLGYLGSVETSAHKGNAVICQAVHKIRQTQ---HRPHSCILEVSDEGLRMVEKS 89 (107)
Q Consensus 37 ~f~lkfLGSVEVp~hKGndVlc~AmqKI~~~r---~pP~~c~LEIS~~Gik~v~~~ 89 (107)
.|.|.|||+|.+..-+|.+-+-.|+.+|-.+. .+...+.|+|+-+||+|.+..
T Consensus 1 ty~V~YLG~~~t~~~~Gegct~kpV~~lw~~~~~~k~~~~m~L~V~~~Gik~~~~~ 56 (182)
T PF14719_consen 1 TYKVRYLGNVLTRGAKGEGCTEKPVSKLWRRYKQGKPDKKMKLTVSPSGIKMETKD 56 (182)
T ss_pred CeEEEEecceecccccccchHHHHHHHHHHHhccCCCCceeEEEEcCCceEEEECC
Confidence 49999999999999999998999999998662 356788899999999999865
No 21
>KOG4458|consensus
Probab=96.90 E-value=0.00056 Score=46.82 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=31.0
Q ss_pred ccceeeeeeeeeEEeeccCCchHHHHHHHHHHhc
Q psy369 34 KRERFLLGYLGSVETSAHKGNAVICQAVHKIRQT 67 (107)
Q Consensus 34 ~~e~f~lkfLGSVEVp~hKGndVlc~AmqKI~~~ 67 (107)
..+-|..||.||+++|.+..+-.+.+||++|...
T Consensus 32 hgi~feakyvgsldiprp~srieivaamrrir~~ 65 (78)
T KOG4458|consen 32 HGICFEAKYVGSLDIPRPGSRIEIVAAMRRIRVE 65 (78)
T ss_pred ccceEeeeeeeeecCCCCCCeeehhHhhhhheee
Confidence 4799999999999999999999999999999644
No 22
>PF08416 PTB: Phosphotyrosine-binding domain; InterPro: IPR013625 The phosphotyrosine-binding domain (PTB, also phosphotyrosine-interaction or PI domain) of tensin tends to be found at the C terminus of a protein. Tensin is a multi-domain protein that binds to actin filaments and functions as a focal-adhesion molecule (focal adhesions are regions of plasma membrane through which cells attach to the extracellular matrix). Human tensin has actin-binding sites, an SH2 (IPR000980 from INTERPRO) domain and a region similar to the tumour suppressor PTEN []. The PTB domain interacts with the cytoplasmic tails of beta integrin by binding to an NPXY motif []. ; GO: 0005515 protein binding; PDB: 3HQC_A 2DKQ_A 2LOZ_A 2CY5_A 2CY4_A 2GJY_A 1WVH_A.
Probab=96.37 E-value=0.016 Score=41.93 Aligned_cols=62 Identities=15% Similarity=0.257 Sum_probs=50.5
Q ss_pred eeeeeeeeeEEeeccCCchHHHHHHHHHHhc----CCCCceeEEEEeccceEEEEeeCCCCCCcce
Q psy369 37 RFLLGYLGSVETSAHKGNAVICQAVHKIRQT----QHRPHSCILEVSDEGLRMVEKSRPTSSVSGT 98 (107)
Q Consensus 37 ~f~lkfLGSVEVp~hKGndVlc~AmqKI~~~----r~pP~~c~LEIS~~Gik~v~~~~k~~~~~~~ 98 (107)
.|+|-||+|+.+-.-.|..-+-.||++...- +.-|+.+.|+|+.+||.|.|-.++.....+.
T Consensus 1 ~~~V~hL~T~~~e~~~g~~~v~d~i~~l~~l~~~~~~w~q~~~lkV~~~~v~L~D~~~k~~le~yP 66 (131)
T PF08416_consen 1 AYNVEHLATFDVESLTGPQAVEDAIRRLKLLEAKGRIWPQEMHLKVSDQGVTLTDIETKEFLEHYP 66 (131)
T ss_dssp EEEEEEEEEEEECTTSCCCHHHHHHHHHHHHHCSS-SS-EEEEEEEETTEEEEEESSTSSECEEEE
T ss_pred CcEEEEEEEEEcCCCcchhhHHHHHHHHHhhccCCCcccEEEEEEEeCCeEEEEECcccchhhhCC
Confidence 3789999999999999999999999887532 3667999999999999999998876554443
No 23
>cd01211 GAPCenA GAPCenA Phosphotyrosine-binding (PTB) domain. GAPCenA Phosphotyrosine-binding (PTB) domain. GAPCenA is a centrosome-associated GTPase activating protein (GAP) for rab 6. It consists of an N-terminal PTB domain and a C-terminal TBC domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=94.77 E-value=0.11 Score=38.60 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=40.9
Q ss_pred eeeeeeeEEeeccCCchHHHHHHHHHHhcCCC-CceeEEEEe--ccc-eEEEEeeCC
Q psy369 39 LLGYLGSVETSAHKGNAVICQAVHKIRQTQHR-PHSCILEVS--DEG-LRMVEKSRP 91 (107)
Q Consensus 39 ~lkfLGSVEVp~hKGndVlc~AmqKI~~~r~p-P~~c~LEIS--~~G-ik~v~~~~k 91 (107)
.|+|||...|-.+|+...+.++|.-+..+-.. |-.+.|-|. ..| |+|.|..++
T Consensus 5 ~vtYLGct~V~aP~sE~e~~r~m~~l~~~s~~~~i~Vtl~Vp~~seG~V~l~D~~t~ 61 (125)
T cd01211 5 NVTYLGCSQLVNPDSENEMKRLMKVLDEQSGAQTINVTLVVPNNIEGTVKLIDAQSN 61 (125)
T ss_pred CcEEeeeEEecCCCCHHHHHHHHHHHHhhcccCCeEEEEEecCCCCceEEEEcCCCC
Confidence 48999999999999999999999666433233 666777665 556 999998664
No 24
>KOG1930|consensus
Probab=93.48 E-value=0.2 Score=44.12 Aligned_cols=66 Identities=23% Similarity=0.314 Sum_probs=45.8
Q ss_pred cceeeeeeeeeEEeeccCCchHHHHHHHHHHhcCCCC--ceeEEEEeccceEEEEeeCCCCC-CcceeE
Q psy369 35 RERFLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRP--HSCILEVSDEGLRMVEKSRPTSS-VSGTVQ 100 (107)
Q Consensus 35 ~e~f~lkfLGSVEVp~hKGndVlc~AmqKI~~~r~pP--~~c~LEIS~~Gik~v~~~~k~~~-~~~~~~ 100 (107)
..--++-||+||+|..=.||.-+..|...-+.....| -.+-+-||-|||.|.|.-+|-++ .-|.+|
T Consensus 344 GAACnVlyl~SVd~ESLTG~~av~kAt~~~~~~~p~p~~tvVHFKVSsQGITLTDNqRK~FFRRHypv~ 412 (483)
T KOG1930|consen 344 GAACNVLYLGSVDVESLTGNEAVQKATSSQRAINPTPRATVVHFKVSSQGITLTDNQRKVFFRRHYPVN 412 (483)
T ss_pred CccceEEEEeeeeccccccHHHHHHHHHHHhhcCCCCCceEEEEEEeccceeeeccchhhheecccccc
Confidence 5678899999999999999975544443333223334 45559999999999998666433 334443
No 25
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=92.18 E-value=0.79 Score=34.37 Aligned_cols=56 Identities=14% Similarity=0.306 Sum_probs=46.1
Q ss_pred ceeeeeeeeeEEeeccCC-chHHHHHHHHHHhc----CCCCceeEEEEeccceEEEEeeCC
Q psy369 36 ERFLLGYLGSVETSAHKG-NAVICQAVHKIRQT----QHRPHSCILEVSDEGLRMVEKSRP 91 (107)
Q Consensus 36 e~f~lkfLGSVEVp~hKG-ndVlc~AmqKI~~~----r~pP~~c~LEIS~~Gik~v~~~~k 91 (107)
.+|.+-|-|-|.|.|-|. -.|+-.|++|.--. |..-++.+|.|+.+||.+++..+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~li~e~I~K~~~~~~~kr~~nrtm~~~I~~~~v~lispdtK 62 (129)
T cd01269 2 QKFEVLYCGRVTVTHKKAPSSLIDDCIEKFSLHEQQRLKDNRTMLFQVGRFEINLISPDTK 62 (129)
T ss_pred CeeEEEEEeeEEEeeccCChHHHHHHHHHhhhhhhhhccCCcEEEEEEeccceEEEcCCcc
Confidence 369999999999996665 46888999998644 345578999999999999998776
No 26
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=91.43 E-value=0.03 Score=33.93 Aligned_cols=12 Identities=58% Similarity=1.290 Sum_probs=11.3
Q ss_pred CCCccccceeee
Q psy369 7 TGRQGIFPSAYA 18 (107)
Q Consensus 7 TG~~GIFPa~ya 18 (107)
+|++|.||+.|+
T Consensus 37 ~g~~G~~P~~yV 48 (49)
T PF14604_consen 37 TGRTGLFPANYV 48 (49)
T ss_dssp TTEEEEEEGGGE
T ss_pred CCEEEEECHHhC
Confidence 999999999996
No 27
>PF10480 ICAP-1_inte_bdg: Beta-1 integrin binding protein; InterPro: IPR019517 ICAP-1 is a serine/threonine-rich protein that binds to the cytoplasmic domains of beta-1 integrins in a highly specific manner, binding to a NPXY sequence motif on the beta-1 integrin. The cytoplasmic domains of integrins are essential for cell adhesion, and the fact that phosphorylation of ICAP-1 by interaction with the cell-matrix implies an important role of ICAP-1 during integrin-dependent cell adhesion []. Over expression of ICAP-1 strongly reduces the integrin-mediated cell spreading on extracellular matrix and inhibits both Cdc42 and Rac1. In addition, ICAP-1 induces release of Cdc42 from cellular membranes and prevents the dissociation of GDP from this GTPase []. An additional function of ICAP-1 is to promote differentiation of osteoprogenitors by supporting their condensation through modulating the integrin high affinity state [].
Probab=91.35 E-value=0.62 Score=37.11 Aligned_cols=56 Identities=20% Similarity=0.366 Sum_probs=37.9
Q ss_pred ccceeeeeeeeeEEeec---cCCch---HHHHHHHHHHhcCC-----CCceeEEEEeccceEEEEee
Q psy369 34 KRERFLLGYLGSVETSA---HKGNA---VICQAVHKIRQTQH-----RPHSCILEVSDEGLRMVEKS 89 (107)
Q Consensus 34 ~~e~f~lkfLGSVEVp~---hKGnd---Vlc~AmqKI~~~r~-----pP~~c~LEIS~~Gik~v~~~ 89 (107)
-...|.+||||++|-.. +++.. -|-+++..-..... .-.-++|+||-+||||.++.
T Consensus 59 ~~~ef~Vkyvg~i~~l~~~~~~~le~pl~lI~~ID~aQq~GkLP~v~~~eevil~VSKyGiKvt~~d 125 (200)
T PF10480_consen 59 TCAEFRVKYVGAIESLQFSMSKSLEGPLELINYIDSAQQDGKLPFVPSDEEVILSVSKYGIKVTDND 125 (200)
T ss_pred chhheeeeeeeehhhcccccccccccHHHHHHHHHHHhhcCcCCCCCCCCeEEEEEeeccEEEeecC
Confidence 37899999999998875 44332 24455544443332 22456699999999999853
No 28
>KOG3535|consensus
Probab=81.35 E-value=3.3 Score=37.00 Aligned_cols=57 Identities=11% Similarity=0.320 Sum_probs=44.8
Q ss_pred ccceeeeeeeeeEEeeccCCchHHHHHHHHHHhc----C---CCCceeEEEEeccceEEEEeeC
Q psy369 34 KRERFLLGYLGSVETSAHKGNAVICQAVHKIRQT----Q---HRPHSCILEVSDEGLRMVEKSR 90 (107)
Q Consensus 34 ~~e~f~lkfLGSVEVp~hKGndVlc~AmqKI~~~----r---~pP~~c~LEIS~~Gik~v~~~~ 90 (107)
...+|-.|..|-=+|+.-.|.-.--.+|.|.-.. | .-.+...|.||+.||||.|-++
T Consensus 47 ~GV~YKaKLIGiddV~~ARGDkmcqdsMmklKGvva~~rs~G~HKqrI~l~Is~~GIKI~DEKt 110 (557)
T KOG3535|consen 47 NGVSYKAKLIGIDDVDKARGDKMCQDSMMKLKGVVAIIRSAGAHKQRITLQISIDGIKILDEKT 110 (557)
T ss_pred CCeeeeeeeccccccchhhhhhHHHHHHHHhhhhhhhhhccccccceEEEEEeecceEEeeccc
Confidence 3689999999999999988877444578887532 2 3346788999999999999655
No 29
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=77.67 E-value=0.7 Score=26.09 Aligned_cols=18 Identities=44% Similarity=0.879 Sum_probs=13.4
Q ss_pred cccccCCCccccceeeeEE
Q psy369 2 GVNLRTGRQGIFPSAYAVD 20 (107)
Q Consensus 2 G~NmRTG~~GIFPa~ya~e 20 (107)
|.+.+ |+.|.||+.|.-.
T Consensus 40 ~~~~~-~~~G~vP~~~v~~ 57 (58)
T smart00326 40 GRLGR-GKEGLFPSNYVEE 57 (58)
T ss_pred EEeCC-CCEEEEchHHEEE
Confidence 34455 9999999998643
No 30
>KOG3697|consensus
Probab=77.27 E-value=3.5 Score=35.15 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=14.7
Q ss_pred cceeeeeeeeeEEeecc
Q psy369 35 RERFLLGYLGSVETSAH 51 (107)
Q Consensus 35 ~e~f~lkfLGSVEVp~h 51 (107)
.-.|.++|||+|||...
T Consensus 16 GVs~~v~YlGcVeV~~S 32 (345)
T KOG3697|consen 16 GVSYSVTYLGCVEVLES 32 (345)
T ss_pred CceEEEEEeeeehHHhh
Confidence 57899999999999753
No 31
>PF02834 LigT_PEase: LigT like Phosphoesterase; InterPro: IPR014051 This entry represents a domain found in a number of known and predicted phosphoesterases. These include bacterial and archaeal 2',5' RNA ligases, and a family of predicted phosphoesterases known as the YjcG family. The 2',5' RNA ligases perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA []. The physiological substrate(s) in prokaryotes may include small 2',5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles. This domain contains a conserved HXTX motif which is thought to be important for catalytic activity, as it is in the related enzyme cyclic nucleotide phosphodiesterase (CPDase) []. In 2',5' RNA ligase this domain is duplicated, with the two conserved motifs forming the proposed active site, which is analogous to that of CPDase [].; PDB: 1VGJ_A 1VDX_A 2FYH_A 2D4G_A.
Probab=70.29 E-value=6.1 Score=25.12 Aligned_cols=46 Identities=17% Similarity=0.345 Sum_probs=30.9
Q ss_pred cceeeeeeeeeEEeeccCCchHHHHHHHHHHhcCCCCceeEEEEeccceEEEEe
Q psy369 35 RERFLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPHSCILEVSDEGLRMVEK 88 (107)
Q Consensus 35 ~e~f~lkfLGSVEVp~hKGndVlc~AmqKI~~~r~pP~~c~LEIS~~Gik~v~~ 88 (107)
.-.-+|.|||.++ ..--+.||+++.+++... +| +++.+.|+.+--.
T Consensus 34 ~~HiTL~flg~~~---~~~~~~l~~~l~~~~~~~-~~----f~~~~~~~~~f~s 79 (87)
T PF02834_consen 34 NPHITLAFLGEVP---PDQLPELIEALANIASRF-PP----FTLTVDGFGLFPS 79 (87)
T ss_dssp GSEEEEEEEEEES---HHHHHHHHHHHHHHHCCC-B-----EEEEEEEEEEEEE
T ss_pred CCeEEEEeCCCCC---HHHHHHHHHHHHhhhccC-CC----eEEEEeEEEEeCC
Confidence 4567899999766 445566888888886443 33 5566777777654
No 32
>KOG4225|consensus
Probab=67.35 E-value=1.9 Score=38.19 Aligned_cols=21 Identities=43% Similarity=0.697 Sum_probs=17.9
Q ss_pred cccccCCCccccceeeeEEee
Q psy369 2 GVNLRTGRQGIFPSAYAVDVE 22 (107)
Q Consensus 2 G~NmRTG~~GIFPa~ya~ev~ 22 (107)
|+|-.||.+||||+-|+-.+.
T Consensus 342 G~i~g~~rqgifP~SyVev~~ 362 (489)
T KOG4225|consen 342 GKIPGTNRQGIFPASYVEVIK 362 (489)
T ss_pred ccccccccccccchhHhhhhh
Confidence 888999999999999975443
No 33
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=65.77 E-value=1.2 Score=26.88 Aligned_cols=14 Identities=50% Similarity=1.063 Sum_probs=12.0
Q ss_pred CCCccccceeeeEE
Q psy369 7 TGRQGIFPSAYAVD 20 (107)
Q Consensus 7 TG~~GIFPa~ya~e 20 (107)
+|++|.||+.|.-+
T Consensus 41 ~g~~G~~P~~~v~~ 54 (55)
T PF07653_consen 41 NGRRGWFPSSYVEE 54 (55)
T ss_dssp TTEEEEEEGGGEEE
T ss_pred CCcEEEEcHHHEEE
Confidence 79999999998754
No 34
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=60.45 E-value=2.6 Score=23.46 Aligned_cols=16 Identities=44% Similarity=0.864 Sum_probs=11.9
Q ss_pred cccccCCCccccceeee
Q psy369 2 GVNLRTGRQGIFPSAYA 18 (107)
Q Consensus 2 G~NmRTG~~GIFPa~ya 18 (107)
|.|.++ +.|.||+.|.
T Consensus 37 ~~~~~~-~~G~vP~~~v 52 (54)
T cd00174 37 GRLLGG-KRGLFPSNYV 52 (54)
T ss_pred EEECCC-CEEEEccccC
Confidence 345555 8999999885
No 35
>cd01217 CG12581 CG12581 Phosphotyrosine-binding (PTB) domain. CG12581 Phosphotyrosine-binding (PTB) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=58.17 E-value=20 Score=27.80 Aligned_cols=51 Identities=22% Similarity=0.209 Sum_probs=33.0
Q ss_pred eeeeeeeeeEEeeccCCchHHHHHHHHHHhcC--------CCCceeEEEEeccceEEEEeeC
Q psy369 37 RFLLGYLGSVETSAHKGNAVICQAVHKIRQTQ--------HRPHSCILEVSDEGLRMVEKSR 90 (107)
Q Consensus 37 ~f~lkfLGSVEVp~hKGndVlc~AmqKI~~~r--------~pP~~c~LEIS~~Gik~v~~~~ 90 (107)
+|.+.||||+- |.-|.. =.|++|+=+... ..-..=-|+|+-.|+++-....
T Consensus 3 ~f~V~yLGS~p-l~dk~~--sLqgiQEPLr~LY~se~~~~kKl~~gsL~Ics~GLrvk~s~~ 61 (158)
T cd01217 3 RCRVLYLGSLV-PKDKKD--GLQGIQEPLRQLYPSEVTPKKKGIDSWLSVWSNGLLLEISAL 61 (158)
T ss_pred eEEEEEEcCcC-Cccccc--hhhhhhhHHHHhhhhccccccccccceEEEecCceEEEeccc
Confidence 79999999973 333333 357887665442 1111223999999999987644
No 36
>KOG3523|consensus
Probab=53.34 E-value=2.6 Score=38.79 Aligned_cols=24 Identities=38% Similarity=0.765 Sum_probs=21.1
Q ss_pred cccccCCCccccceeeeEEeeccC
Q psy369 2 GVNLRTGRQGIFPSAYAVDVEYED 25 (107)
Q Consensus 2 G~NmRTG~~GIFPa~ya~ev~~~~ 25 (107)
|.-+|-|++|.||+.|+.|+..+.
T Consensus 646 GeRl~Dge~GWFP~~~veeI~~~~ 669 (695)
T KOG3523|consen 646 GERLRDGERGWFPSSYVEEITNPH 669 (695)
T ss_pred ccccccCccCcchHHHHHHhcCHH
Confidence 777899999999999999987663
No 37
>KOG4225|consensus
Probab=42.33 E-value=11 Score=33.52 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=16.8
Q ss_pred ccccCCCccccceeeeEEeec
Q psy369 3 VNLRTGRQGIFPSAYAVDVEY 23 (107)
Q Consensus 3 ~NmRTG~~GIFPa~ya~ev~~ 23 (107)
-+++-|+.||||+-|+-=+..
T Consensus 267 eGEhhGr~GifP~sYvE~~~~ 287 (489)
T KOG4225|consen 267 EGEHHGRVGIFPASYVEILTP 287 (489)
T ss_pred eeeecceecceechheeecCc
Confidence 368889999999999855544
No 38
>COG1514 LigT 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis]
Probab=41.80 E-value=29 Score=26.31 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=22.5
Q ss_pred cceeeeeeeeeEEeeccCCchHHHHHHHHHHhc
Q psy369 35 RERFLLGYLGSVETSAHKGNAVICQAVHKIRQT 67 (107)
Q Consensus 35 ~e~f~lkfLGSVEVp~hKGndVlc~AmqKI~~~ 67 (107)
.=+.+|+|||-| + ....+.|+.|+.+|+..
T Consensus 37 n~HiTL~flGev--~-e~~~~~l~~~l~~i~~~ 66 (180)
T COG1514 37 NLHITLKFLGEV--D-EDKADELIEALARIAAP 66 (180)
T ss_pred CceEEEEccCCc--C-chHHHHHHHHHHHhhcC
Confidence 456789999965 4 44566688999999764
No 39
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=41.56 E-value=33 Score=25.60 Aligned_cols=31 Identities=13% Similarity=0.449 Sum_probs=26.9
Q ss_pred cceeeeeeeeeEEeeccCCchHHHHHHHHHHhc
Q psy369 35 RERFLLGYLGSVETSAHKGNAVICQAVHKIRQT 67 (107)
Q Consensus 35 ~e~f~lkfLGSVEVp~hKGndVlc~AmqKI~~~ 67 (107)
.+.+.+-|.|+++ .+||-|.+.+|+.++...
T Consensus 190 ~~~~~i~~vGr~~--~~Kg~~~li~a~~~l~~~ 220 (358)
T cd03812 190 EDKFVIGHVGRFS--EQKNHEFLIEIFAELLKK 220 (358)
T ss_pred CCCEEEEEEeccc--cccChHHHHHHHHHHHHh
Confidence 5678999999975 699999999999999654
No 40
>PF04327 DUF464: Protein of unknown function (DUF464); InterPro: IPR007422 This entry is represented by Bacteriophage Cp-1, Orf13. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2IDL_A 2G0J_D 2G0I_B 2P92_B 1S12_C.
Probab=40.29 E-value=30 Score=23.67 Aligned_cols=23 Identities=39% Similarity=0.697 Sum_probs=16.7
Q ss_pred eEEeeccC-----CchHHHHHHHHHHhc
Q psy369 45 SVETSAHK-----GNAVICQAVHKIRQT 67 (107)
Q Consensus 45 SVEVp~hK-----GndVlc~AmqKI~~~ 67 (107)
++++--|- |.|++|+|+--+..+
T Consensus 15 ~~~v~GHA~~~~~G~DIVCAaVS~l~~~ 42 (103)
T PF04327_consen 15 GFEVSGHAGYAEYGQDIVCAAVSALVQT 42 (103)
T ss_dssp EEEEESTSS-STCCHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCCCCcEEehhHHHHHHH
Confidence 45565554 599999998777655
No 41
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=40.00 E-value=76 Score=22.86 Aligned_cols=29 Identities=7% Similarity=0.049 Sum_probs=24.5
Q ss_pred eEEeeccCCchHHHHHHHHHHhcCCCCce
Q psy369 45 SVETSAHKGNAVICQAVHKIRQTQHRPHS 73 (107)
Q Consensus 45 SVEVp~hKGndVlc~AmqKI~~~r~pP~~ 73 (107)
||-+|.|...+.|.++++.+.....|+..
T Consensus 4 SViIp~yNe~~~l~~~L~sl~~q~~~~~~ 32 (232)
T cd06437 4 TVQLPVFNEKYVVERLIEAACALDYPKDR 32 (232)
T ss_pred EEEEecCCcHHHHHHHHHHHHhcCCCccc
Confidence 78999999999999999999876666544
No 42
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=37.07 E-value=77 Score=24.99 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=36.5
Q ss_pred ccCCchHHHHHHHHHHhcC----------CCCceeEEEEeccceEEEEeeCCCCCCcceeEEEE
Q psy369 50 AHKGNAVICQAVHKIRQTQ----------HRPHSCILEVSDEGLRMVEKSRPTSSVSGTVQITI 103 (107)
Q Consensus 50 ~hKGndVlc~AmqKI~~~r----------~pP~~c~LEIS~~Gik~v~~~~k~~~~~~~~~~~~ 103 (107)
||-|+..-..+-+|...+. .|-+.+++.|++.|.++.|+ ++-..++..||=
T Consensus 2 Y~mG~TlT~~~y~kf~~a~pY~~~~~~~~~P~~~ldv~v~~~gf~~GD~---NYPI~Pkl~iTN 62 (180)
T PF06483_consen 2 YFMGDTLTTLMYDKFKNATPYGNTKSDSAMPTEALDVSVSFTGFKLGDS---NYPINPKLTITN 62 (180)
T ss_pred ceecchHHHHHHHHhccCCcccccccCCCCCCceEEEEEEeCCcccCCC---CCCcCCcEEEEc
Confidence 5678887777777776551 34488899999999999986 455555555553
No 43
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=35.78 E-value=52 Score=23.45 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=26.9
Q ss_pred cCCchHHHHHHHHHHhcC-CCCceeEEEEeccceEE
Q psy369 51 HKGNAVICQAVHKIRQTQ-HRPHSCILEVSDEGLRM 85 (107)
Q Consensus 51 hKGndVlc~AmqKI~~~r-~pP~~c~LEIS~~Gik~ 85 (107)
..-.|||.||++|...++ .+-..+++|-..++-+.
T Consensus 23 STa~Dvi~Qal~KA~rs~~~~~~fVLvEEv~~~~~~ 58 (93)
T cd01780 23 STAQDVIQQTLCKARRSNPNPSDFVLVEEVCKDTKN 58 (93)
T ss_pred ccHHHHHHHHHHHhccCCCCccceEEEEEeeccccc
Confidence 466899999999997644 45577789988876663
No 44
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=33.73 E-value=73 Score=20.50 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=24.3
Q ss_pred ccCCchHHHHHHHHHHhcCCCCceeEEEEeccc
Q psy369 50 AHKGNAVICQAVHKIRQTQHRPHSCILEVSDEG 82 (107)
Q Consensus 50 ~hKGndVlc~AmqKI~~~r~pP~~c~LEIS~~G 82 (107)
.-.-.||+.+|++|..-...|...|++|+.-.|
T Consensus 25 ~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~ 57 (90)
T smart00314 25 RTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDG 57 (90)
T ss_pred CCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCc
Confidence 345679999999999655456678888887334
No 45
>PF14436 EndoU_bacteria: Bacterial EndoU nuclease
Probab=31.45 E-value=1.8e+02 Score=20.12 Aligned_cols=50 Identities=10% Similarity=0.104 Sum_probs=41.0
Q ss_pred eeeeeEEeeccCCchHHHHHHHHHHhcC-C---CCceeEEEEeccceEEEEeeC
Q psy369 41 GYLGSVETSAHKGNAVICQAVHKIRQTQ-H---RPHSCILEVSDEGLRMVEKSR 90 (107)
Q Consensus 41 kfLGSVEVp~hKGndVlc~AmqKI~~~r-~---pP~~c~LEIS~~Gik~v~~~~ 90 (107)
+.-+|..-|.+-..+-|-+++++++.++ . ...-|....+..|+++-.-..
T Consensus 63 ~~~~st~FP~~ws~~~I~~~i~~a~~n~~~~~~~~~~~~~~~~~~Gv~i~v~~~ 116 (128)
T PF14436_consen 63 KGKKSTFFPKNWSDEKILDEIQEAYKNKYSVPRRNGNCWVGGTSSGVKIEVYVD 116 (128)
T ss_pred CCCCCEECCccCCHHHHHHHHHHHHhCCCcceecCCCEEEEEecCCEEEEEEEe
Confidence 6678889999999999999999999885 2 347888999999999865443
No 46
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=31.05 E-value=1.2e+02 Score=19.65 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=25.8
Q ss_pred cceeeeeeeeeEEe-eccCCchHHHHHHHHHHh
Q psy369 35 RERFLLGYLGSVET-SAHKGNAVICQAVHKIRQ 66 (107)
Q Consensus 35 ~e~f~lkfLGSVEV-p~hKGndVlc~AmqKI~~ 66 (107)
.+.+.+.++++|-| |.|+|.++-.+-|+++..
T Consensus 67 g~~~~~~~i~~v~v~p~~R~~Gl~~~L~~~~~~ 99 (127)
T PF13527_consen 67 GKKFKAAYIGDVAVDPEYRGRGLGRQLMRALLE 99 (127)
T ss_dssp TEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHH
T ss_pred CEEEEEEEEEEEEECHHHcCCCHHHHHHHHHHH
Confidence 57899999999988 678999987777777653
No 47
>PRK14553 hypothetical protein; Provisional
Probab=30.75 E-value=10 Score=26.40 Aligned_cols=17 Identities=29% Similarity=0.663 Sum_probs=13.1
Q ss_pred cCCchHHHHHHHHHHhc
Q psy369 51 HKGNAVICQAVHKIRQT 67 (107)
Q Consensus 51 hKGndVlc~AmqKI~~~ 67 (107)
.+|.|++|+|+--+...
T Consensus 26 ~~G~DIVCAaVS~l~~~ 42 (108)
T PRK14553 26 EHGQDIVCASVSAISIT 42 (108)
T ss_pred CCCCcEEEhhhHHHHHH
Confidence 35699999998777644
No 48
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=28.41 E-value=1.7e+02 Score=21.05 Aligned_cols=37 Identities=14% Similarity=0.036 Sum_probs=26.8
Q ss_pred eeEEeeccCCchHHHHHHHHHHhcCCCCceeEEEEec
Q psy369 44 GSVETSAHKGNAVICQAVHKIRQTQHRPHSCILEVSD 80 (107)
Q Consensus 44 GSVEVp~hKGndVlc~AmqKI~~~r~pP~~c~LEIS~ 80 (107)
=||-+|.|...+.|..+++.+.....++...++=|.+
T Consensus 31 isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvd 67 (251)
T cd06439 31 VTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVS 67 (251)
T ss_pred EEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEE
Confidence 3788999999999999999998765554333443333
No 49
>KOG3316|consensus
Probab=28.37 E-value=21 Score=27.73 Aligned_cols=9 Identities=56% Similarity=0.870 Sum_probs=8.8
Q ss_pred cccCCCccc
Q psy369 4 NLRTGRQGI 12 (107)
Q Consensus 4 NmRTG~~GI 12 (107)
||||+.||+
T Consensus 88 NLrTNhrG~ 96 (163)
T KOG3316|consen 88 NLRTNHRGT 96 (163)
T ss_pred hccccCCce
Confidence 999999999
No 50
>PRK15124 2'-5' RNA ligase; Provisional
Probab=27.34 E-value=42 Score=24.50 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=17.3
Q ss_pred ceeeeeeeeeEEeeccCCchHHHHHHHHH
Q psy369 36 ERFLLGYLGSVETSAHKGNAVICQAVHKI 64 (107)
Q Consensus 36 e~f~lkfLGSVEVp~hKGndVlc~AmqKI 64 (107)
-.-+|+|||.+ +..+ -+.|++|++++
T Consensus 42 lHiTL~FlG~v--~~~~-~~~l~~~l~~~ 67 (176)
T PRK15124 42 LHLTLAFLGEV--SAEK-QQALSQLAGRI 67 (176)
T ss_pred cEEEEEecCCC--CHHH-HHHHHHHHHhc
Confidence 35678999994 4332 33477888877
No 51
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=26.43 E-value=2.2e+02 Score=20.23 Aligned_cols=31 Identities=19% Similarity=0.197 Sum_probs=26.2
Q ss_pred ccceeeeeeeeeEEeeccCCchHHHHHHHHHHh
Q psy369 34 KRERFLLGYLGSVETSAHKGNAVICQAVHKIRQ 66 (107)
Q Consensus 34 ~~e~f~lkfLGSVEVp~hKGndVlc~AmqKI~~ 66 (107)
....+.+-|.|+++- +||-+.+.+|++++..
T Consensus 175 ~~~~~~i~~~g~~~~--~K~~~~l~~~~~~l~~ 205 (348)
T cd03820 175 DLKSKRILAVGRLVP--QKGFDLLIEAWAKIAK 205 (348)
T ss_pred CCCCcEEEEEEeecc--ccCHHHHHHHHHHHHh
Confidence 356788999999764 9999999999999965
No 52
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=25.72 E-value=2e+02 Score=21.59 Aligned_cols=31 Identities=16% Similarity=0.314 Sum_probs=26.0
Q ss_pred cceeeeeeeeeEEeeccCCchHHHHHHHHHHhc
Q psy369 35 RERFLLGYLGSVETSAHKGNAVICQAVHKIRQT 67 (107)
Q Consensus 35 ~e~f~lkfLGSVEVp~hKGndVlc~AmqKI~~~ 67 (107)
.+.+.+-|.|++. .+||.+.+..|+.++...
T Consensus 186 ~~~~~i~~~G~~~--~~K~~~~li~a~~~l~~~ 216 (367)
T cd05844 186 RRPPRILFVGRFV--EKKGPLLLLEAFARLARR 216 (367)
T ss_pred CCCcEEEEEEeec--cccChHHHHHHHHHHHHh
Confidence 4567899999986 689999999999998654
No 53
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=25.59 E-value=74 Score=22.59 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=26.8
Q ss_pred cceeeeeeeeeEEeeccCCchHHHHHHHHHHhc
Q psy369 35 RERFLLGYLGSVETSAHKGNAVICQAVHKIRQT 67 (107)
Q Consensus 35 ~e~f~lkfLGSVEVp~hKGndVlc~AmqKI~~~ 67 (107)
.+++.+-|.|.+. .+||-+.+.+|++++...
T Consensus 187 ~~~~~i~~~g~~~--~~k~~~~~i~~~~~l~~~ 217 (353)
T cd03811 187 PDGPVILAVGRLS--PQKGFDTLIRAFALLRKE 217 (353)
T ss_pred CCceEEEEEecch--hhcChHHHHHHHHHhhhc
Confidence 5678999999987 689999999999998654
No 54
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=25.43 E-value=24 Score=27.71 Aligned_cols=14 Identities=50% Similarity=0.743 Sum_probs=10.8
Q ss_pred CCCccccceeeeEE
Q psy369 7 TGRQGIFPSAYAVD 20 (107)
Q Consensus 7 TG~~GIFPa~ya~e 20 (107)
||+.|+|++|=|.-
T Consensus 81 tGrhglf~sYEAF~ 94 (179)
T PF03894_consen 81 TGRHGLFASYEAFA 94 (179)
T ss_dssp TT-EEEEEEEGGGG
T ss_pred cCCcccccccchhH
Confidence 89999999986643
No 55
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=24.29 E-value=1.1e+02 Score=19.84 Aligned_cols=29 Identities=24% Similarity=0.666 Sum_probs=19.9
Q ss_pred eeeeeeeeEEeeccCCchHHHH-HHHHHHhcC
Q psy369 38 FLLGYLGSVETSAHKGNAVICQ-AVHKIRQTQ 68 (107)
Q Consensus 38 f~lkfLGSVEVp~hKGndVlc~-AmqKI~~~r 68 (107)
+.+.|+|+.+ ++|+.+.+.+ |++++....
T Consensus 3 ~~i~~~g~~~--~~k~~~~li~~~~~~l~~~~ 32 (135)
T PF13692_consen 3 LYIGYLGRIR--PDKGLEELIEAALERLKEKH 32 (135)
T ss_dssp EEEE--S-SS--GGGTHHHHHH-HHHHHHHHS
T ss_pred cccccccccc--ccccccchhhhHHHHHHHHC
Confidence 4566777665 5799998888 999987654
No 56
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=24.06 E-value=2.4e+02 Score=19.32 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=26.9
Q ss_pred eeEEeeccCCc-hHHHHHHHHHHhcCCCCceeEEEEeccc
Q psy369 44 GSVETSAHKGN-AVICQAVHKIRQTQHRPHSCILEVSDEG 82 (107)
Q Consensus 44 GSVEVp~hKGn-dVlc~AmqKI~~~r~pP~~c~LEIS~~G 82 (107)
=||-+|.++.. +.|.++++.+.....++ +++=|.+.|
T Consensus 3 vsiii~~~n~~~~~l~~~l~sl~~q~~~~--~eiivvd~g 40 (202)
T cd04184 3 ISIVMPVYNTPEKYLREAIESVRAQTYPN--WELCIADDA 40 (202)
T ss_pred EEEEEecccCcHHHHHHHHHHHHhCcCCC--eEEEEEeCC
Confidence 37889999999 99999999997665443 455444444
No 57
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=23.40 E-value=87 Score=22.18 Aligned_cols=33 Identities=18% Similarity=0.398 Sum_probs=27.7
Q ss_pred ccceeeeeeeeeEEeeccCCchHHHHHHHHHHhcC
Q psy369 34 KRERFLLGYLGSVETSAHKGNAVICQAVHKIRQTQ 68 (107)
Q Consensus 34 ~~e~f~lkfLGSVEVp~hKGndVlc~AmqKI~~~r 68 (107)
..+.+.+-|.|++. .+||.+.+..|+.++....
T Consensus 196 ~~~~~~i~~~g~~~--~~k~~~~~i~~~~~~~~~~ 228 (374)
T cd03801 196 PEDEPVILFVGRLV--PRKGVDLLLEALAKLRKEY 228 (374)
T ss_pred cCCCeEEEEecchh--hhcCHHHHHHHHHHHhhhc
Confidence 35678999999988 7999999999999986543
No 58
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=23.16 E-value=1.9e+02 Score=24.03 Aligned_cols=35 Identities=3% Similarity=-0.034 Sum_probs=28.4
Q ss_pred eeEEeeccCCchHHHHHHHHHHhcCCCCceeEEEE
Q psy369 44 GSVETSAHKGNAVICQAVHKIRQTQHRPHSCILEV 78 (107)
Q Consensus 44 GSVEVp~hKGndVlc~AmqKI~~~r~pP~~c~LEI 78 (107)
=||-+|.|...++|.++++.+.....|+...++-|
T Consensus 51 vsVIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiV 85 (439)
T TIGR03111 51 ITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIIL 85 (439)
T ss_pred EEEEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEE
Confidence 38999999999999999999987777765544434
No 59
>KOG2528|consensus
Probab=22.33 E-value=40 Score=30.21 Aligned_cols=17 Identities=41% Similarity=0.937 Sum_probs=13.0
Q ss_pred cccccCCCccccceeeeE
Q psy369 2 GVNLRTGRQGIFPSAYAV 19 (107)
Q Consensus 2 G~NmRTG~~GIFPa~ya~ 19 (107)
|-|- +|++|.|||.|+-
T Consensus 41 g~Ns-rge~GlfPa~yVe 57 (490)
T KOG2528|consen 41 GSNS-RGERGLFPASYVE 57 (490)
T ss_pred CCCc-cCccCCCccccee
Confidence 3344 4999999999983
No 60
>PF07238 PilZ: PilZ domain; InterPro: IPR009875 The ubiquitous bacterial second messenger cyclic-di-GMP (c-di-GMP) is associated with the regulation of biofilm formation, the control of exopolysaccharide synthesis, flagellar- and pili-based motility, gene expression, interactions of bacteria with eukaryotic hosts and multicellular behaviour in diverse bacteria. With the exception of bacterial cellulose synthases, the identities of c-di-GMP receptors and end targets of the proteins having one or more PilZ domains are mostly uncharacterised. However it was suggested that the PilZ domains present in the BcsA subunits of bacterial cellulose synthases function in c-di-GMP binding []. More recently YcgR (see IPR023787 from INTERPRO) was found to bind c-di-GMP tightly and specifically; also isolated PilZ domains from YcgR and BcsA bound c-di-GMP indicating that the PilZ domain was sufficient for binding of c-di-GMP and significantly that site-directed mutagenesis performed on YcgR implicated the most conserved residues in the PilZ domain directly in c-di-GMP binding []. It was suggested that c-di-GMP binding to PilZ brings about conformational changes in the protein that stabilise the bound ligand and probability initiates the downstream signal transduction cascade. In the case of YcgR, c-di-GMP binding regulates flagellum-based motility in a c-di-GMP-dependent manner (see IPR023787 from INTERPRO) []. The association of the PilZ domain with a variety of other domains, including likely components of bacterial multidrug secretion system, could provide clues to multiple functions of the c-di-GMP in bacterial pathogenesis and cell development. Binding and mutagenesis studies of several PilZ domain proteins have confirmed this observation and demonstrated that c-di-GMP binding depends on residues in RxxxR and D/NxSxxG sequence motifs. The crystal structure, at 1.7 A, of a PilZ domain::c-di-GMP complex from Vibrio cholerae shows c-di-GMP contacting seven of nine strongly conserved residues. Binding of c-di-GMP causes a conformational switch whereby the C- and N-terminal domains are brought into close opposition forming a new allosteric interaction surface that spans these domains and the c-di-GMP at their interface []. ; GO: 0035438 cyclic-di-GMP binding; PDB: 2RDE_B 1YLN_A 3KYG_A 3DSG_B 2GJG_A 3KYF_A 1YWU_A 2L74_A 2L1T_A 3CNR_A ....
Probab=22.10 E-value=1.8e+02 Score=17.74 Aligned_cols=29 Identities=14% Similarity=0.316 Sum_probs=18.2
Q ss_pred eEEEEeccceEEEEeeCCCCCCcceeEEEEe
Q psy369 74 CILEVSDEGLRMVEKSRPTSSVSGTVQITIT 104 (107)
Q Consensus 74 c~LEIS~~Gik~v~~~~k~~~~~~~~~~~~~ 104 (107)
-++.||..|+.+.... .....-.+++.|.
T Consensus 28 ~~~diS~~G~~~~~~~--~~~~~~~v~l~~~ 56 (102)
T PF07238_consen 28 TIVDISEGGCAFRSPK--PLEPGDRVRLSFS 56 (102)
T ss_dssp EEEEETTSEEEEEECT--G--TTSEEEEEEE
T ss_pred EEEEECccceEEEECC--CCCCCCEEEEEEE
Confidence 3488999999999844 4444444555554
No 61
>COG2315 MmcQ Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.65 E-value=30 Score=25.19 Aligned_cols=13 Identities=38% Similarity=0.531 Sum_probs=10.9
Q ss_pred ccCCCccccceee
Q psy369 5 LRTGRQGIFPSAY 17 (107)
Q Consensus 5 mRTG~~GIFPa~y 17 (107)
||-+..||.||||
T Consensus 60 Lr~~~~~I~Payh 72 (118)
T COG2315 60 LRQQQPGIRPAYH 72 (118)
T ss_pred HHHhCCCcCcccc
Confidence 4666889999999
No 62
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=21.42 E-value=3e+02 Score=19.30 Aligned_cols=38 Identities=11% Similarity=0.084 Sum_probs=26.7
Q ss_pred eEEeeccCCc-hHHHHHHHHHHhcCCCCceeEEEEeccc
Q psy369 45 SVETSAHKGN-AVICQAVHKIRQTQHRPHSCILEVSDEG 82 (107)
Q Consensus 45 SVEVp~hKGn-dVlc~AmqKI~~~r~pP~~c~LEIS~~G 82 (107)
||-+|.+... +.|-++++.++....|+...++=|.+.|
T Consensus 4 sviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~ 42 (234)
T cd06421 4 DVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDG 42 (234)
T ss_pred EEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCC
Confidence 7888988864 7888999999876666533345555544
No 63
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=21.33 E-value=2.2e+02 Score=19.03 Aligned_cols=27 Identities=7% Similarity=0.079 Sum_probs=21.9
Q ss_pred eEEeeccCCchHHHHHHHHHHhcCCCC
Q psy369 45 SVETSAHKGNAVICQAVHKIRQTQHRP 71 (107)
Q Consensus 45 SVEVp~hKGndVlc~AmqKI~~~r~pP 71 (107)
||-+|.|+.-+.|-+++..+.....++
T Consensus 1 sivi~~~n~~~~l~~~l~sl~~q~~~~ 27 (202)
T cd06433 1 SIITPTYNQAETLEETIDSVLSQTYPN 27 (202)
T ss_pred CEEEeccchHHHHHHHHHHHHhCCCCC
Confidence 677899999999999999997665443
No 64
>PRK13679 hypothetical protein; Provisional
Probab=20.67 E-value=1e+02 Score=22.21 Aligned_cols=30 Identities=10% Similarity=0.027 Sum_probs=21.5
Q ss_pred cceeeeeeeeeEEeeccCCchHHHHHHHHHHhc
Q psy369 35 RERFLLGYLGSVETSAHKGNAVICQAVHKIRQT 67 (107)
Q Consensus 35 ~e~f~lkfLGSVEVp~hKGndVlc~AmqKI~~~ 67 (107)
....+|.|+|.++- .--+.|.+++++++..
T Consensus 32 ~pHITL~f~g~~~~---~~~~~l~~~l~~~~~~ 61 (168)
T PRK13679 32 PPHITLKEPFEISD---EQLDSIVEELRAIASE 61 (168)
T ss_pred CCceEEecCCCCCH---HHHHHHHHHHHHHHhc
Confidence 34899999998742 1235688999998654
No 65
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=20.50 E-value=1.1e+02 Score=22.12 Aligned_cols=32 Identities=19% Similarity=0.411 Sum_probs=26.9
Q ss_pred ccceeeeeeeeeEEeeccCCchHHHHHHHHHHhc
Q psy369 34 KRERFLLGYLGSVETSAHKGNAVICQAVHKIRQT 67 (107)
Q Consensus 34 ~~e~f~lkfLGSVEVp~hKGndVlc~AmqKI~~~ 67 (107)
..+.+.+-|.|.++ .+||-+.+.+|++++...
T Consensus 200 ~~~~~~i~~~G~~~--~~K~~~~li~a~~~l~~~ 231 (375)
T cd03821 200 LPDKRIILFLGRLH--PKKGLDLLIEAFAKLAER 231 (375)
T ss_pred CCCCcEEEEEeCcc--hhcCHHHHHHHHHHhhhh
Confidence 35678899999986 589999999999998754
No 66
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=20.44 E-value=1.2e+02 Score=20.51 Aligned_cols=44 Identities=20% Similarity=0.136 Sum_probs=23.5
Q ss_pred ccccCCC-ccccceeeeEEeeccCCCCCCCCCccceeeeeeee----eEEeeccCCch
Q psy369 3 VNLRTGR-QGIFPSAYAVDVEYEDLQTTTPKPKRERFLLGYLG----SVETSAHKGNA 55 (107)
Q Consensus 3 ~NmRTG~-~GIFPa~ya~ev~~~~~~~~~~~~~~e~f~lkfLG----SVEVp~hKGnd 55 (107)
+||+.++ ++=++=+++-=+...+ ..+-|.++.|| .||-| ||.++
T Consensus 19 ~~m~~~~~r~P~nmf~vel~~~~~--------~~~Il~ik~Lg~~~V~VEr~-~k~~~ 67 (69)
T smart00596 19 HNMLNRDTKNPQNMFEVELVPAAN--------GKEILNIKTLGGQRVTVERP-HKRKN 67 (69)
T ss_pred EcccccCCCCcceeEEEEeeecCC--------CcceEeehhhCCeeEEEecC-cccCC
Confidence 4677777 5544444432222221 24588898888 45555 44443
Done!