RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy369
(107 letters)
>3f0w_A NUMB-R, NUMB-like protein; PH domain-like, PID domain,
phosphoprotein, signaling protei structural genomics,
structural genomics consortium, SGC; 2.70A {Homo
sapiens} PDB: 1wj1_A 2nmb_A* 1ddm_A
Length = 168
Score = 55.0 bits (132), Expect = 6e-11
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 37 RFLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPHSCILEVSDEGLRMVEKSR 90
F + YLG VE +G V AV K++ + +L VS +GLR+V+
Sbjct: 43 SFPVRYLGHVEVEESRGMHVCEDAVKKLKAMGRKSVKSVLWVSADGLRVVDDKT 96
>2dyq_A Amyloid beta A4 precursor protein-binding family 3;
phosphotyrosine-interaction domain (PTB/PID alzheimer'S
disease, structural genomics, NPPSFA; 3.10A {Homo
sapiens}
Length = 144
Score = 53.4 bits (128), Expect = 2e-10
Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 27 QTTTPKPKRE---RFLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPHS--CILEVSDE 81
++ + ++ Y+G++ + G V+ +A+ + R +L VSD
Sbjct: 4 GSSGLDAVSQAAQKYEALYMGTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDS 63
Query: 82 GLRMVE 87
+
Sbjct: 64 LMTAHP 69
>2ysz_A Amyloid beta A4 precursor protein-binding family B member 2 and
amyloid beta A4 protein...; chimera, Fe65L, PID domain,
amyloid precursor protein; NMR {Mus musculus}
Length = 185
Score = 53.7 bits (128), Expect = 2e-10
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 28 TTTPKPKRE---RFLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPHS--CILEVSDEG 82
++ P PK E +F + YLG + G + A+ + + + + V+D
Sbjct: 5 SSGPTPKTELVQKFRVQYLGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADAT 64
Query: 83 LRMVEKSRP 91
+ ++ +
Sbjct: 65 VTVISEKNE 73
>1wgu_A APBB2, amyloid beta (A4) precursor protein-bindin, family B,
member 2; phosphotyrosine-interaction domain, amyloid
disease, structural genomics; NMR {Mus musculus} SCOP:
b.55.1.2 PDB: 2roz_B
Length = 136
Score = 52.6 bits (126), Expect = 3e-10
Identities = 12/74 (16%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 28 TTTPKPKRE---RFLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPHSC--ILEVSDEG 82
++ P PK E +F + YLG + G + A+ + + + + V+D
Sbjct: 5 SSGPTPKTELVQKFRVQYLGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADAT 64
Query: 83 LRMVEKSRPTSSVS 96
+ ++ + +
Sbjct: 65 VTVISEKNEEEVLV 78
>2yt0_A Amyloid beta A4 protein and amyloid beta A4 precursor
protein-binding family B member...; chimera, Fe65L, PID
domain, amyloid precursor protein; NMR {Mus musculus}
PDB: 2yt1_A
Length = 176
Score = 52.8 bits (126), Expect = 5e-10
Identities = 9/70 (12%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 29 TTPKPKRERFLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPHS--CILEVSDEGLRMV 86
T ++F + YLG + G + A+ + + + + V+D + ++
Sbjct: 55 TPKTELVQKFRVQYLGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADATVTVI 114
Query: 87 EKSRPTSSVS 96
+ +
Sbjct: 115 SEKNEEEVLV 124
>3dxe_A Amyloid beta A4 protein-binding family B member 1; alzheimer'S
disease, APP, AICD, Fe65, PTB domain, alternative
splicing, polymorphism, alzheimer disease, apoptosis;
2.00A {Homo sapiens} PDB: 3dxd_A 3dxc_A
Length = 140
Score = 50.6 bits (121), Expect = 2e-09
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 30 TPKP-KRERFLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPHSC--ILEVSDEGLRMV 86
PK ++F + YLG+V + G VI A+ + + R + V+ L ++
Sbjct: 1 APKNELVQKFQVYYLGNVPVAKPVGVDVINGALESVLSSSSREQWTPSHVSVAPATLTIL 60
Query: 87 EKS 89
+
Sbjct: 61 HQQ 63
>3so6_A LDL receptor adaptor protein; PTB, endocytic adaptor, autosomal
reces hypercholesterolemia, ARH, cholesterol; 1.37A
{Rattus norvegicus}
Length = 137
Score = 47.9 bits (114), Expect = 2e-08
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 37 RFLLGYLGSVETSAHKGNAVICQAVHKIRQT----QHRPHSCILEVSDEGLRMVEKS 89
F L YLG KG + AV +I T + L+VS G+ + +
Sbjct: 5 VFSLKYLGMTLVERPKGEELSAAAVKRIVATAKASGKKLQKVTLKVSPRGIILTDSL 61
>1ntv_A Disabled homolog 1; beta-sandwich, signaling protein; 1.50A {Mus
musculus} SCOP: b.55.1.2 PDB: 1nu2_A* 1oqn_A*
Length = 152
Score = 48.0 bits (114), Expect = 3e-08
Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Query: 37 RFLLGYLGSVETSAHKGNAVICQAVHKIRQTQH-------RPHSCILEVSDEGLRMVEKS 89
R+ +G E SA +G+ + ++ K++ L +S G+++ ++
Sbjct: 19 RYKAKLIGIDEVSAARGDKLCQDSMMKLKGVVAGARSKGEHKQKIFLTISFGGIKIFDEK 78
>1p3r_A Disabled homolog 2; PTB, signaling protein; 2.10A {Mus musculus}
SCOP: b.55.1.2 PDB: 1m7e_A
Length = 160
Score = 47.7 bits (113), Expect = 3e-08
Identities = 6/63 (9%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 37 RFLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPHS-------CILEVSDEGLRMVEKS 89
++ +G + +G+ + ++ K++ S + +S G++++++
Sbjct: 18 KYKAKLIGIDDVPDARGDKMSQDSMMKLKGMAAAGRSQGQHKQRIWVNISLSGIKIIDEK 77
Query: 90 RPT 92
Sbjct: 78 TGV 80
>2ej8_A DCC-interacting protein 13 alpha; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 1.84A {Homo sapiens}
Length = 160
Score = 47.7 bits (113), Expect = 3e-08
Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 38 FLLGYLGSVETSAHKGNAVICQAVHKIRQTQH-----RPHSCILEVSDEGLRMVE 87
F++ +LGS+E + V+ + + +I + R L V+ + L++++
Sbjct: 18 FIVRFLGSMEVKSDDHPDVVYETMRQILAARAIHNIFRMTESHLLVTCDCLKLID 72
>2ela_A Adapter protein containing PH domain, PTB domain and leucine
zipper motif 1; APPL, cell cycle; 2.00A {Homo sapiens}
Length = 175
Score = 47.3 bits (112), Expect = 5e-08
Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 28 TTTPKPKRERFLLGYLGSVETSAHKGNAVICQAVHKIRQTQH-----RPHSCILEVSDEG 82
T + F++ +LGS+E + V+ + + +I + R L V+ +
Sbjct: 21 MTEDSILHQLFIVRFLGSMEVKSDDHPDVVYETMRQILAARAIHNIFRMTESHLLVTCDC 80
Query: 83 LRMVE 87
L++++
Sbjct: 81 LKLID 85
>1wvh_A Tensin, tensin1; beta sandwich, cell adhesion; 1.50A {Gallus
gallus} SCOP: b.55.1.2 PDB: 2gjy_A
Length = 134
Score = 44.6 bits (105), Expect = 3e-07
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 42 YLGSVETSAHKGNAVICQAVHKI--RQTQHRPHSCILEVSDEGLRMVEKSR 90
++ SVE + G I +AV + +VS +G+ + + R
Sbjct: 8 FINSVEMESLTGPQAISKAVAETLVADPTPTATIVHFKVSAQGITLTDNQR 58
>3hqc_A Tensin-like C1 domain-containing phosphatase; TENC1,
phosphotyrosine binding domain, PTB, TNS2, KIAA1075,
struct genomics, PSI-2; 1.80A {Homo sapiens} PDB:
2dkq_A
Length = 157
Score = 41.2 bits (96), Expect = 8e-06
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 42 YLGSVETSAHKGNAVICQAVHKIRQTQHRPHSCI--LEVSDEGLRMVEKSR 90
YL SVET + G + +A RP + +VS +G+ + + R
Sbjct: 20 YLTSVETESLTGPQAVARASSAALSCSPRPTPAVVHFKVSAQGITLTDNQR 70
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 37.2 bits (87), Expect = 5e-05
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 1 MGVNLRTGRQGIFPSAYAVDV 21
N+RTG +G+FP+ YA++V
Sbjct: 40 EAYNMRTGARGVFPAYYAIEV 60
>4dbb_A Amyloid beta A4 precursor protein-binding family 1; X11S/mints,
PTB domain, chimera protein, protein transport; HET:
IPA GOL; 1.90A {Rattus norvegicus}
Length = 162
Score = 39.0 bits (90), Expect = 6e-05
Identities = 8/59 (13%), Positives = 19/59 (32%), Gaps = 8/59 (13%)
Query: 37 RFLLGYLGSVETSAHKGNAVICQAVHKIRQ--------TQHRPHSCILEVSDEGLRMVE 87
F YLGS + + K + + + L +S + ++++
Sbjct: 10 IFAANYLGSTQLLSDKTPSKNVRMMQAQEAVSRIKPEGESQPMTEVDLFISTQRIKVLN 68
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold
protein 1, islet-brain-1, IB-1, mitogen-activated P
kinase 8-interacting protein 1; 3.00A {Rattus
norvegicus}
Length = 71
Score = 36.9 bits (86), Expect = 8e-05
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 2 GVNLRTGRQGIFPSAYAVDVEYE 24
N+RTG +G+FP+ YA++V E
Sbjct: 44 AYNMRTGARGVFPAYYAIEVTKE 66
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 32.6 bits (75), Expect = 0.004
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 1 MGVNLRTGRQGIFPSAY 17
G++L TGR GIFPS Y
Sbjct: 44 KGLSLLTGRTGIFPSDY 60
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 32.9 bits (75), Expect = 0.004
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 1 MGVNLRTGRQGIFPSAYAVDVEYEDLQTT 29
G +L TG G+ P Y +
Sbjct: 57 YGTSLTTGCSGLLPENYITKADECSTWIF 85
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 32.3 bits (74), Expect = 0.006
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 1 MGVNLRTGRQGIFPSAY---AVDVEYED 25
+L TG G PS Y ++Y+D
Sbjct: 42 EARSLTTGETGYIPSIYLAPVDRLDYKD 69
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 31.8 bits (73), Expect = 0.006
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 2 GVNLRTGRQGIFPSAY 17
GV+ RT + G FP Y
Sbjct: 45 GVSRRTQKFGTFPGNY 60
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton,
phosphorylation, SH3 domain, DNA damage, DNA repair,
nucleus; NMR {Saccharomyces cerevisiae}
Length = 71
Score = 31.8 bits (73), Expect = 0.006
Identities = 5/28 (17%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 1 MGVNLRTGRQGIFPSAY---AVDVEYED 25
M + +G+ G+ P+ + D ++ +
Sbjct: 44 MCQLVDSGKSGLVPAQFIEPVRDKKHTE 71
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 31.7 bits (73), Expect = 0.007
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 1 MGVNLRTGRQGIFPSAY 17
M + +G+ G+ P+ +
Sbjct: 40 MCQLVDSGKSGLVPAQF 56
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 31.9 bits (73), Expect = 0.007
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 1 MGVNLRTGRQGIFPSAY 17
G LR G G FP +
Sbjct: 53 YGERLRDGETGWFPEDF 69
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 31.9 bits (72), Expect = 0.010
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 1 MGVNLRTGRQGIFPSAYAVDVEY 23
G+N RT ++G FP Y VE+
Sbjct: 63 PGLNERTRQRGDFPGTY---VEF 82
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 32.9 bits (74), Expect = 0.011
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 2 GVNLRTGRQGIFPSAYAVDV 21
GVN + GR G++PS +
Sbjct: 480 GVNRKLGRTGLYPSYKVREK 499
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 31.2 bits (71), Expect = 0.013
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 1 MGVNLRTGRQGIFPSAY 17
G + T +G FPS+Y
Sbjct: 46 YGEHDTTKARGWFPSSY 62
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 30.7 bits (70), Expect = 0.014
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 1 MGVNLRTGRQGIFPSAY 17
G + +T +G FP +Y
Sbjct: 46 YGESEKTKMRGWFPFSY 62
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 30.7 bits (70), Expect = 0.015
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 1 MGVNLRTGRQGIFPSAY 17
+G L ++G P+AY
Sbjct: 38 LGKLLDGSKEGWVPTAY 54
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 30.6 bits (70), Expect = 0.015
Identities = 4/22 (18%), Positives = 8/22 (36%), Gaps = 3/22 (13%)
Query: 1 MGVNLRTGRQGIFPSAYAVDVE 22
+ N + G+ P + V
Sbjct: 38 VAENESGSKTGLVPEEF---VS 56
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3,
SH3-containing adapter molecule 1, SCAM-1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 90
Score = 31.3 bits (71), Expect = 0.016
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 1 MGVNLRTGRQGIFPSAYAVDVEYEDLQTTTPKP 33
G TGRQGIFP++Y V V E
Sbjct: 54 EGRITGTGRQGIFPASY-VQVSREPRLRLCDDS 85
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein
1; IRTKS-SH3, espfu, complex structure, protein
binding; NMR {Homo sapiens}
Length = 67
Score = 30.7 bits (70), Expect = 0.016
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 2 GVNLRTGRQGIFPSAY 17
G + + +G FPS+Y
Sbjct: 46 GEHDVSKARGWFPSSY 61
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 30.3 bits (69), Expect = 0.021
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 1 MGVNLRTGRQGIFPSAYAVDVE 22
NLRT QG+ +V
Sbjct: 45 WVTNLRTDEQGLIVEDLVEEVS 66
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 30.4 bits (69), Expect = 0.027
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 1 MGVNLRTGRQGIFPSAYAVDVE-YEDLQTTTP 31
+ L ++G P+AY + Y+D + T P
Sbjct: 40 LAKLLDGSKEGWVPTAY---MTPYKDTRNTVP 68
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C
4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A
1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C
1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 30.4 bits (69), Expect = 0.027
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 1 MGVNLRTGRQGIFPSAY---AVDVEYED 25
+L TG G PS Y ++ E
Sbjct: 43 EARSLTTGETGYIPSNYVAPVDSIQGEQ 70
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 30.0 bits (68), Expect = 0.033
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 1 MGVNLRTGRQGIFPSAYAVDVE 22
+L TG G PS Y V+
Sbjct: 52 EARSLTTGETGYIPSNYVAPVD 73
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 29.9 bits (68), Expect = 0.033
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 1 MGVNLRTGRQGIFPSAYAVDVEYED 25
+G + G +G+FPS Y V +
Sbjct: 37 LGELEKDGSKGLFPSNY---VSLGN 58
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels,
signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP:
b.34.2.1 PDB: 1h92_A 1kik_A
Length = 62
Score = 29.6 bits (67), Expect = 0.043
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 1 MGVNLRTGRQGIFPSAY 17
+L TG++G P +
Sbjct: 42 KAQSLTTGQEGFIPFNF 58
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3
domain, peptide complex, alternative splicing, disease
mutation, HOST-virus interaction, phosphoprotein,
polymorphism; 1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A
1pnj_A 2pni_A 1pks_A 1pkt_A
Length = 83
Score = 30.1 bits (67), Expect = 0.047
Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Query: 1 MGVNLRTGRQGIFPSAYAVDVEY 23
G N TG +G FP Y VEY
Sbjct: 57 NGYNETTGERGDFPGTY---VEY 76
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain,
SH2 domain, SRC homology 3, RAS signaling pathway,
proto- oncogene, phosphorylation; 1.5A {Homo sapiens}
PDB: 2j06_A
Length = 65
Score = 29.3 bits (66), Expect = 0.049
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 1 MGVNLRTGRQGIFPSAYAVDV 21
NLRT QG+ +V
Sbjct: 43 WVTNLRTDEQGLIVEDLVEEV 63
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 30.1 bits (68), Expect = 0.060
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 3/28 (10%)
Query: 6 RTGRQGIFPSAYAVDVEYEDLQTTTPKP 33
R G G+ P + V D+ T
Sbjct: 48 RLGGPGLVPVGF---VSIIDIATGYATG 72
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 29.2 bits (66), Expect = 0.062
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 1 MGVNLRTGRQGIFPSAY 17
+L T ++G PS Y
Sbjct: 43 KAKSLLTKKEGFIPSNY 59
>1aqc_A X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1.2 PDB: 1x11_A*
Length = 172
Score = 30.2 bits (67), Expect = 0.069
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 20/71 (28%)
Query: 37 RFLLGYLGSVETSAHKGN------AVICQAVHKIRQTQHRPHS--------------CIL 76
F YLGS + + K +AV +I+ Q S L
Sbjct: 9 IFAANYLGSTQLLSDKTPSKNVRMMQAQEAVSRIKMAQKLAKSRKKAPEGESQPMTEVDL 68
Query: 77 EVSDEGLRMVE 87
+ + ++++
Sbjct: 69 FILTQRIKVLN 79
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding
protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A
1neb_A 3i35_A
Length = 64
Score = 29.1 bits (66), Expect = 0.074
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 3/22 (13%)
Query: 1 MGVNLRTGRQGIFPSAYAVDVE 22
G RTGR G+ P+ Y +E
Sbjct: 43 YGTVQRTGRTGMLPANY---IE 61
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 29.3 bits (66), Expect = 0.080
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 1 MGVNLRTGRQGIFPSAY 17
++L TGR+ P
Sbjct: 53 KAISLSTGRESYIPGIC 69
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 28.8 bits (65), Expect = 0.086
Identities = 3/17 (17%), Positives = 7/17 (41%)
Query: 1 MGVNLRTGRQGIFPSAY 17
+ N + G+ P +
Sbjct: 42 VAENESGSKTGLVPEEF 58
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 28.5 bits (64), Expect = 0.15
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 5 LRTGRQGIFPSAYAVDVEYEDLQTTTP 31
+ G++G FP+ + V E L P
Sbjct: 46 IGKGQEGYFPANH---VASETLYQELP 69
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.16
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 16/43 (37%)
Query: 59 QAVHKIRQTQHRPHSCILEVSDEGLRMVE-KSRPTSSVSGTVQ 100
QA+ K L+ S L++ S P ++ T++
Sbjct: 20 QALKK------------LQAS---LKLYADDSAPALAIKATME 47
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 28.5 bits (64), Expect = 0.16
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 7 TGRQGIFPSAYAVDVEYEDLQTTTPKPKRER 37
RQG P+AY V + L P+ E+
Sbjct: 58 NDRQGFVPAAY-V----KKLAAAWSHPQFEK 83
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 28.6 bits (64), Expect = 0.17
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 1 MGVNLRTGRQGIFPSAY 17
+L T ++G PS Y
Sbjct: 61 KARSLATRKEGYIPSNY 77
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 28.1 bits (63), Expect = 0.18
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 8 GRQGIFPSAYAVDVEYEDLQTTTPKPKR 35
G++G FP + VE P+P
Sbjct: 53 GKEGSFPVDH---VEILLSDVPPPQPVH 77
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex,
GRB2,VAV, signaling protein/signaling protein complex;
1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 27.6 bits (61), Expect = 0.24
Identities = 6/16 (37%), Positives = 6/16 (37%)
Query: 2 GVNLRTGRQGIFPSAY 17
G N T G FP
Sbjct: 49 GRNTATNEVGWFPCNR 64
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 27.1 bits (61), Expect = 0.30
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 1 MGVNLRTGRQGIFPSAY 17
N TG G+ P+ Y
Sbjct: 39 KINNDTTGETGLVPTTY 55
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 27.7 bits (61), Expect = 0.31
Identities = 6/16 (37%), Positives = 6/16 (37%)
Query: 2 GVNLRTGRQGIFPSAY 17
G N T G FP
Sbjct: 57 GRNTATNEVGWFPCNR 72
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 27.8 bits (62), Expect = 0.35
Identities = 6/36 (16%), Positives = 16/36 (44%)
Query: 2 GVNLRTGRQGIFPSAYAVDVEYEDLQTTTPKPKRER 37
G + +G++G FP+++ + + T +
Sbjct: 1 GSSGSSGQKGWFPASHVKLLGPSSERATPAFHPVCQ 36
Score = 25.1 bits (55), Expect = 3.5
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 8 GRQGIFPSAY 17
G G+FPS Y
Sbjct: 76 GVTGLFPSNY 85
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 77
Score = 27.3 bits (61), Expect = 0.36
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 6/33 (18%)
Query: 1 MGVNLRTGRQGIFPSAYAVDVEYEDLQTTTPKP 33
G N + G QG+ P+ Y E L P
Sbjct: 48 EGKNNK-GEQGLVPTDY-----VEILPNDGKDP 74
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 27.6 bits (61), Expect = 0.47
Identities = 8/28 (28%), Positives = 10/28 (35%), Gaps = 3/28 (10%)
Query: 6 RTGRQGIFPSAYAVDVEYEDLQTTTPKP 33
R G G+ P +Y V DL
Sbjct: 46 RLGGPGLVPVSY---VRIIDLMDPAKYA 70
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 27.4 bits (61), Expect = 0.48
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 2 GVNLRTGRQGIFPSAY---AVDVEYED 25
++ TG+ G PS Y A ++ E+
Sbjct: 65 ARSIATGKSGYIPSNYVVPADSIQAEE 91
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 27.0 bits (60), Expect = 0.48
Identities = 2/17 (11%), Positives = 8/17 (47%)
Query: 1 MGVNLRTGRQGIFPSAY 17
+ +G++G+ +
Sbjct: 55 RVKHHTSGQEGLLAAGA 71
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein;
1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A
1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A
1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A
...
Length = 62
Score = 26.8 bits (60), Expect = 0.49
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 8 GRQGIFPSAY 17
GRQG P+AY
Sbjct: 48 GRQGFVPAAY 57
>1n3h_A SHC transforming protein; free protein, beta sandwich, signaling
protein; NMR {Homo sapiens} SCOP: b.55.1.2 PDB: 1oy2_A
2l1c_A* 1shc_A*
Length = 207
Score = 27.9 bits (61), Expect = 0.51
Identities = 10/79 (12%), Positives = 25/79 (31%), Gaps = 9/79 (11%)
Query: 38 FLLGYLGSVE-------TSAHKGNAVICQAVHKIRQTQHRPHSCI--LEVSDEGLRMVEK 88
+L+ Y+G VE + V +A+ + + + L +
Sbjct: 52 YLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGATRRRKPCSRPLSSILG 111
Query: 89 SRPTSSVSGTVQITITSDS 107
+ +T+++ S
Sbjct: 112 RSNLKFAGMPITLTVSTSS 130
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 26.8 bits (60), Expect = 0.53
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 5 LRTGRQGIFPSAY 17
+ G++G PS Y
Sbjct: 48 DKNGQEGYIPSNY 60
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 27.0 bits (60), Expect = 0.56
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 6 RTGRQGIFPSAYAVDVEYEDLQT 28
R G +G PS+Y V+ +L+T
Sbjct: 60 RNGHEGYVPSSYLVEKSPNNLET 82
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 26.5 bits (59), Expect = 0.59
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 8 GRQGIFPSAY 17
RQG P+AY
Sbjct: 31 DRQGFVPAAY 40
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 26.4 bits (59), Expect = 0.62
Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 1 MGVNLRTGRQGIFPSAYAVDV 21
G T RQGIFP Y VDV
Sbjct: 43 EGRIPGTSRQGIFPITY-VDV 62
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein,
membrane, nuclear protein, phosphorylation,
polymorphism, transport, structural genomics; NMR {Homo
sapiens}
Length = 70
Score = 26.4 bits (59), Expect = 0.65
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 1 MGVNLRTGRQGIFPSAY 17
G T RQGIFP Y
Sbjct: 44 EGRIPGTSRQGIFPITY 60
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 26.5 bits (59), Expect = 0.66
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 8 GRQGIFPSAY 17
RQG P+AY
Sbjct: 47 DRQGFVPAAY 56
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 26.6 bits (59), Expect = 0.77
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 1 MGVNLRTGRQGIFPSAY 17
+L T ++G PS Y
Sbjct: 39 KARSLATRKEGYIPSNY 55
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 26.0 bits (58), Expect = 0.81
Identities = 4/10 (40%), Positives = 5/10 (50%)
Query: 8 GRQGIFPSAY 17
G G+ P Y
Sbjct: 48 GIDGLVPHQY 57
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 26.0 bits (58), Expect = 0.83
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 8 GRQGIFPSAYAVDVEYEDLQTT 29
+ G+FPS + ++E E
Sbjct: 43 NKLGLFPSNFVKELELEHHHHH 64
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 26.0 bits (58), Expect = 0.85
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 8 GRQGIFPSAY 17
GR GIFP+ Y
Sbjct: 44 GRTGIFPANY 53
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 26.5 bits (59), Expect = 0.85
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 6/26 (23%)
Query: 8 GRQGIFPSAYAVDVEYEDLQTTTPKP 33
G +G+ P Y + L T K
Sbjct: 52 GMRGLIPHKY---IT---LPAGTEKQ 71
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 26.1 bits (58), Expect = 0.87
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
Query: 5 LRTGRQGIFPSAYAVDVE-YEDL 26
+ GR+GI P+ Y V+ E +
Sbjct: 52 NKVGREGIIPANY---VQKREGV 71
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 26.6 bits (59), Expect = 0.87
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 5 LRTGRQGIFPSAY 17
+ G G P Y
Sbjct: 60 TKNGNIGYIPYNY 72
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 26.3 bits (58), Expect = 0.88
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 8 GRQGIFPSAYAVDVEYEDLQTTTPKPKRE 36
RQG P+AY ++ +
Sbjct: 33 DRQGFVPAAYVKKLDSGTGKELVLALYDY 61
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 26.2 bits (58), Expect = 0.91
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 3/29 (10%)
Query: 8 GRQGIFPSAY---AVDVEYEDLQTTTPKP 33
RQG P+AY + + P
Sbjct: 44 DRQGFVPAAYVKKLDPAQSASRENLGGPP 72
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 25.9 bits (58), Expect = 1.0
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 8 GRQGIFPSAY 17
G GIFP ++
Sbjct: 46 GATGIFPLSF 55
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 26.2 bits (58), Expect = 1.1
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 8 GRQGIFPSAY 17
RQG P+AY
Sbjct: 41 DRQGFVPAAY 50
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 25.8 bits (57), Expect = 1.1
Identities = 5/18 (27%), Positives = 7/18 (38%), Gaps = 3/18 (16%)
Query: 5 LRTGRQGIFPSAYAVDVE 22
+ G G P Y +E
Sbjct: 53 TKNGNIGYIPYNY---IE 67
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 25.6 bits (57), Expect = 1.1
Identities = 7/18 (38%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 5 LRTGRQGIFPSAYAVDVE 22
L +G+ G++P+ Y VE
Sbjct: 44 LDSGQLGLYPANY---VE 58
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN
structural genomics consortium, SGC; 2.00A {Homo
sapiens}
Length = 89
Score = 26.3 bits (58), Expect = 1.1
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 5 LRTGRQGIFPSAY 17
L +GR G+FPS Y
Sbjct: 74 LPSGRVGVFPSNY 86
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 25.7 bits (57), Expect = 1.2
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 6 RTGRQGIFPSAY 17
R G G P+ +
Sbjct: 47 RAGCCGYIPANH 58
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 25.7 bits (57), Expect = 1.2
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 7 TGRQGIFPSAY 17
R GIFPS Y
Sbjct: 48 GDRSGIFPSNY 58
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane;
2.05A {Saccharomyces cerevisiae}
Length = 70
Score = 25.8 bits (57), Expect = 1.2
Identities = 6/17 (35%), Positives = 6/17 (35%), Gaps = 1/17 (5%)
Query: 1 MGVNLRTGRQGIFPSAY 17
G GI PS Y
Sbjct: 43 KARRAN-GETGIIPSNY 58
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 25.6 bits (57), Expect = 1.2
Identities = 4/16 (25%), Positives = 8/16 (50%), Gaps = 1/16 (6%)
Query: 2 GVNLRTGRQGIFPSAY 17
+ G++G+ P Y
Sbjct: 39 AEDSE-GKRGMIPVPY 53
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 25.7 bits (57), Expect = 1.4
Identities = 4/10 (40%), Positives = 6/10 (60%)
Query: 8 GRQGIFPSAY 17
R G FP+ +
Sbjct: 49 DRIGFFPANF 58
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 25.6 bits (57), Expect = 1.4
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 8 GRQGIFPSAY 17
G+ GIFP +
Sbjct: 47 GKVGIFPKVF 56
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 26.0 bits (57), Expect = 1.5
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 5 LRTGRQGIFPSAYAVDVEYEDLQTTTPKP 33
L G++G+ PS + V+ + + +
Sbjct: 64 LLDGQRGLVPSNFVDFVQDNESRLASTSG 92
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 25.7 bits (57), Expect = 1.5
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 6 RTGRQGIFPSAY 17
R G++G P +Y
Sbjct: 48 RNGQRGFVPGSY 59
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3
domain, phosphorylation; NMR {Mus musculus} SCOP:
b.34.2.1
Length = 67
Score = 25.3 bits (56), Expect = 1.6
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 6 RTGRQGIFPSAY 17
+ G +G PS Y
Sbjct: 43 KYGSEGYIPSNY 54
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 26.7 bits (58), Expect = 1.6
Identities = 5/17 (29%), Positives = 9/17 (52%), Gaps = 1/17 (5%)
Query: 6 RTGRQGIFPSAYAVDVE 22
G G+ P+ Y V ++
Sbjct: 159 ALGTTGLVPANY-VQIQ 174
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C*
2o88_A 1bbz_A 1awo_A
Length = 63
Score = 25.2 bits (56), Expect = 1.6
Identities = 6/11 (54%), Positives = 6/11 (54%)
Query: 7 TGRQGIFPSAY 17
QG PSAY
Sbjct: 47 KNGQGWVPSAY 57
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42
guanine nucleotide exchange factor (GEF) 9, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 25.8 bits (57), Expect = 1.7
Identities = 3/10 (30%), Positives = 7/10 (70%)
Query: 8 GRQGIFPSAY 17
+G FP+++
Sbjct: 52 DEEGWFPASF 61
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 25.3 bits (56), Expect = 1.7
Identities = 4/16 (25%), Positives = 8/16 (50%), Gaps = 1/16 (6%)
Query: 2 GVNLRTGRQGIFPSAY 17
+ G++G+ P Y
Sbjct: 41 AEDSE-GKRGMIPVPY 55
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 25.2 bits (56), Expect = 1.9
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 8 GRQGIFPSAY 17
G+QG+FP+ Y
Sbjct: 47 GKQGLFPNNY 56
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 25.4 bits (56), Expect = 1.9
Identities = 5/18 (27%), Positives = 8/18 (44%), Gaps = 3/18 (16%)
Query: 8 GRQGIFPSAYAVDVEYED 25
G G+ P Y + +D
Sbjct: 51 GIDGLIPHQY---IVVQD 65
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A
2kr3_A
Length = 65
Score = 25.0 bits (55), Expect = 2.0
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 8 GRQGIFPSAY 17
RQG P+AY
Sbjct: 51 ERQGFVPAAY 60
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 25.4 bits (56), Expect = 2.1
Identities = 6/10 (60%), Positives = 6/10 (60%)
Query: 8 GRQGIFPSAY 17
GRQGI P
Sbjct: 48 GRQGIVPGNR 57
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 25.2 bits (56), Expect = 2.1
Identities = 4/12 (33%), Positives = 7/12 (58%)
Query: 6 RTGRQGIFPSAY 17
G++G+ P Y
Sbjct: 47 FNGQKGLVPCNY 58
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 25.3 bits (56), Expect = 2.1
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 8 GRQGIFPSAY 17
G GIFP++
Sbjct: 49 GVSGIFPASS 58
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 26.5 bits (57), Expect = 2.1
Identities = 9/84 (10%), Positives = 19/84 (22%), Gaps = 3/84 (3%)
Query: 5 LRTGRQGIFPSAYAVDVEYEDLQTTTPKPKRERFLLGYLGSVETSAHKGNAVICQAVHKI 64
+ GR G+ P Y VE + K + + +
Sbjct: 165 NKDGRVGMIPVPY---VEKLVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSG 221
Query: 65 RQTQHRPHSCILEVSDEGLRMVEK 88
+ + ++K
Sbjct: 222 SPGAAITPLPSTQNGPVFAKAIQK 245
Score = 25.4 bits (54), Expect = 4.6
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 7 TGRQGIFPSAYAVDVEYED 25
GR+G+FP + + ++
Sbjct: 280 NGRKGLFPFTHVKIFDPQN 298
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 25.4 bits (56), Expect = 2.1
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 8 GRQGIFPSAYAVDVEYEDLQTTTPKP 33
G++G FP+AY ++ T T
Sbjct: 49 GKKGHFPAAYVEELPSNAGNTATKAS 74
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein;
2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB:
2sem_A 3sem_A 1k76_A 1kfz_A
Length = 58
Score = 24.8 bits (55), Expect = 2.2
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 8 GRQGIFPSAY 17
R+GIFPS Y
Sbjct: 44 NRRGIFPSNY 53
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 24.9 bits (55), Expect = 2.2
Identities = 4/10 (40%), Positives = 8/10 (80%)
Query: 8 GRQGIFPSAY 17
G++G+FP +
Sbjct: 50 GKEGVFPDNF 59
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 24.8 bits (55), Expect = 2.3
Identities = 5/10 (50%), Positives = 8/10 (80%)
Query: 8 GRQGIFPSAY 17
GR+G+FP +
Sbjct: 43 GRRGLFPDNF 52
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 24.9 bits (55), Expect = 2.4
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 8 GRQGIFPSAY 17
GR G FPS Y
Sbjct: 46 GRTGWFPSNY 55
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 25.0 bits (55), Expect = 2.4
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
Query: 8 GRQGIFPSAYAVDVEYEDLQT 28
GR G FPS Y VE E +Q+
Sbjct: 51 GRIGWFPSTY---VEEEGIQS 68
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 85
Score = 25.5 bits (56), Expect = 2.4
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 8 GRQGIFPSAYAVDVEYEDLQTTTPK 32
GR G+FP+ D + +
Sbjct: 52 GRSGLFPADIVQPAAAPDFSFSKEQ 76
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 24.8 bits (55), Expect = 2.4
Identities = 5/15 (33%), Positives = 9/15 (60%), Gaps = 3/15 (20%)
Query: 8 GRQGIFPSAYAVDVE 22
G++G P+ Y V+
Sbjct: 45 GKRGWVPANY---VQ 56
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 24.9 bits (55), Expect = 2.5
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 6 RTGRQGIFPSAY 17
G +G+ P Y
Sbjct: 51 AKGNEGLVPRTY 62
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 24.8 bits (55), Expect = 2.5
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 8 GRQGIFPSAY 17
G+ G+FP Y
Sbjct: 44 GQTGMFPRNY 53
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 26.1 bits (56), Expect = 2.5
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 2 GVNLRTGRQGIFPSAY 17
G+N RT ++G FP+
Sbjct: 619 GINERTKQRGDFPTDC 634
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 25.9 bits (56), Expect = 2.6
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 6 RTGRQGIFPSAYAVDVEYEDLQTTTPKP 33
G G+ P+ Y V ++ E T K
Sbjct: 188 ALGTTGLVPANY-VQIQMEFHNDRTSKG 214
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 24.9 bits (55), Expect = 2.6
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 8 GRQGIFPSAY 17
G+ G FP +Y
Sbjct: 55 GQSGFFPLSY 64
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 24.9 bits (55), Expect = 2.6
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 8 GRQGIFPSAY 17
G GIFP ++
Sbjct: 60 GATGIFPLSF 69
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 24.4 bits (54), Expect = 2.6
Identities = 5/10 (50%), Positives = 9/10 (90%)
Query: 8 GRQGIFPSAY 17
G +G+FP++Y
Sbjct: 43 GLKGLFPTSY 52
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 25.0 bits (55), Expect = 2.6
Identities = 5/10 (50%), Positives = 8/10 (80%)
Query: 8 GRQGIFPSAY 17
GR+G+FP +
Sbjct: 53 GRRGVFPDNF 62
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel
beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP:
b.34.2.1 PDB: 1n5z_A
Length = 92
Score = 25.2 bits (55), Expect = 2.7
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 5 LRTGRQGIFPSAY 17
+ G G P Y
Sbjct: 60 TKNGNIGYIPYNY 72
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 24.9 bits (55), Expect = 2.8
Identities = 4/18 (22%), Positives = 9/18 (50%), Gaps = 1/18 (5%)
Query: 8 GRQGIFPSAYAVDVEYED 25
G+ G P Y ++++
Sbjct: 52 GKDGFIPKNY-IEMKPHP 68
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 25.1 bits (55), Expect = 2.8
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 8 GRQGIFPSAYAVDVEYEDLQTTTPKPKRE 36
G+ G+FPS + ++ E + + +
Sbjct: 60 GKTGMFPSNFIKELSGESDELGISQDEHH 88
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 24.9 bits (55), Expect = 2.8
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 8 GRQGIFPSAY 17
GR GIFP Y
Sbjct: 49 GRVGIFPRTY 58
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling
protein; 2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 24.9 bits (55), Expect = 2.9
Identities = 5/10 (50%), Positives = 8/10 (80%)
Query: 8 GRQGIFPSAY 17
GR+G+FP +
Sbjct: 46 GRRGVFPDNF 55
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 24.9 bits (55), Expect = 2.9
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 8 GRQGIFPSAY 17
GR G+ PS Y
Sbjct: 49 GRTGLIPSNY 58
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain
protein 2A, endophilin 1, EEN-B1, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 24.9 bits (55), Expect = 3.0
Identities = 5/10 (50%), Positives = 5/10 (50%)
Query: 8 GRQGIFPSAY 17
G G FP Y
Sbjct: 49 GHSGFFPINY 58
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 24.4 bits (54), Expect = 3.0
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 8 GRQGIFPSAY 17
GR+GIFP+ Y
Sbjct: 47 GREGIFPANY 56
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 71
Score = 24.6 bits (54), Expect = 3.1
Identities = 4/10 (40%), Positives = 8/10 (80%)
Query: 8 GRQGIFPSAY 17
G++G P++Y
Sbjct: 50 GKEGWAPASY 59
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 24.4 bits (54), Expect = 3.1
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 8 GRQGIFPSAY 17
GR G+ PS Y
Sbjct: 45 GRTGLIPSNY 54
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 25.1 bits (55), Expect = 3.2
Identities = 4/29 (13%), Positives = 13/29 (44%)
Query: 4 NLRTGRQGIFPSAYAVDVEYEDLQTTTPK 32
+ ++G FP+++ + + + P
Sbjct: 50 RGKKRQKGWFPASHVKLLGPSSERASGPS 78
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 24.5 bits (54), Expect = 3.3
Identities = 9/15 (60%), Positives = 10/15 (66%), Gaps = 3/15 (20%)
Query: 8 GRQGIFPSAYAVDVE 22
GR GIFP+ Y VE
Sbjct: 43 GRLGIFPANY---VE 54
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 24.5 bits (54), Expect = 3.3
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 3 VNLRTGRQGIFPSAY 17
V + G +G P++Y
Sbjct: 46 VRRKEGGEGYVPTSY 60
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 24.6 bits (54), Expect = 3.4
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 8 GRQGIFPSAY 17
GRQG+ P+
Sbjct: 52 GRQGLAPANR 61
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 24.4 bits (54), Expect = 3.4
Identities = 4/10 (40%), Positives = 7/10 (70%)
Query: 8 GRQGIFPSAY 17
+ G+FP+ Y
Sbjct: 43 NKLGLFPANY 52
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 25.4 bits (55), Expect = 3.4
Identities = 10/30 (33%), Positives = 11/30 (36%)
Query: 8 GRQGIFPSAYAVDVEYEDLQTTTPKPKRER 37
GR G FPS Y + E L T
Sbjct: 48 GRIGWFPSNYVEEDYSEYLPETGGGSGSSM 77
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 24.5 bits (54), Expect = 3.4
Identities = 5/10 (50%), Positives = 8/10 (80%)
Query: 8 GRQGIFPSAY 17
GR+G+FP +
Sbjct: 51 GRRGVFPDNF 60
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 24.6 bits (54), Expect = 3.5
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 6 RTGRQGIFPSAY 17
G++G PS Y
Sbjct: 57 VNGKKGYVPSNY 68
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 25.2 bits (55), Expect = 3.5
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 7 TGRQGIFPSAYAVDVEYEDLQTTTPKP 33
R G+ P +++ +D +
Sbjct: 67 CARLGLIPCNMVSEIQADDEEMMDQSG 93
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins,
CIN85, PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 24.5 bits (54), Expect = 3.5
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 8 GRQGIFPSAY 17
GR G FPS Y
Sbjct: 48 GRTGWFPSNY 57
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 24.7 bits (54), Expect = 3.6
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 8 GRQGIFPSAY 17
G+ GIFP+ Y
Sbjct: 61 GQTGIFPANY 70
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 24.6 bits (54), Expect = 3.7
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 8 GRQGIFPSAY 17
G +G FP +Y
Sbjct: 51 GGRGWFPKSY 60
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 24.5 bits (54), Expect = 3.7
Identities = 5/10 (50%), Positives = 5/10 (50%)
Query: 8 GRQGIFPSAY 17
G G FP Y
Sbjct: 45 GESGFFPINY 54
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 25.9 bits (55), Expect = 3.8
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 5 LRTGRQGIFPSAY 17
L G+ G++P+ Y
Sbjct: 469 LDNGQVGLYPANY 481
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 24.6 bits (54), Expect = 3.8
Identities = 4/11 (36%), Positives = 6/11 (54%)
Query: 7 TGRQGIFPSAY 17
+ QG P+ Y
Sbjct: 49 SEEQGWVPATY 59
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 81
Score = 24.7 bits (54), Expect = 3.8
Identities = 5/17 (29%), Positives = 8/17 (47%), Gaps = 3/17 (17%)
Query: 6 RTGRQGIFPSAYAVDVE 22
R ++G P Y +E
Sbjct: 59 RGNQKGKVPITY---LE 72
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 24.8 bits (54), Expect = 4.0
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 8 GRQGIFPSAYAVDVEYEDLQTTTPKPKR 35
+G PS Y + ++ + P K
Sbjct: 50 ELEGWAPSHY---LVLDENEQPDPSGKE 74
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 24.6 bits (54), Expect = 4.1
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 6 RTGRQGIFPSAY 17
+ G +G PS+Y
Sbjct: 61 KNGHEGYAPSSY 72
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 24.6 bits (54), Expect = 4.2
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 8 GRQGIFPSAY 17
GR G+FPS
Sbjct: 53 GRIGVFPSVL 62
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus}
Length = 68
Score = 24.1 bits (53), Expect = 4.4
Identities = 5/10 (50%), Positives = 8/10 (80%)
Query: 8 GRQGIFPSAY 17
G+ G+FPS +
Sbjct: 49 GKTGMFPSNF 58
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like
protein; SH3, EPS8, EPS8L2, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 24.1 bits (53), Expect = 4.6
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 6 RTGRQGIFPSAY 17
R+G+ G P
Sbjct: 47 RSGQAGYVPCNI 58
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 24.2 bits (53), Expect = 4.9
Identities = 4/10 (40%), Positives = 7/10 (70%)
Query: 8 GRQGIFPSAY 17
G +G FP+ +
Sbjct: 49 GLRGWFPAKF 58
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 24.4 bits (53), Expect = 4.9
Identities = 8/29 (27%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 8 GRQGIFPSAYAVDVEYEDLQTTTPKPKRE 36
G G FP Y V+ PK+
Sbjct: 49 GNFGWFPCNY-VEKMPSSENEKAVSPKKA 76
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 24.2 bits (53), Expect = 5.0
Identities = 5/10 (50%), Positives = 6/10 (60%)
Query: 8 GRQGIFPSAY 17
G G+FP Y
Sbjct: 59 GVTGLFPGNY 68
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 25.3 bits (54), Expect = 5.3
Identities = 4/23 (17%), Positives = 12/23 (52%)
Query: 8 GRQGIFPSAYAVDVEYEDLQTTT 30
G++G FP + ++ ++ +
Sbjct: 281 GKRGHFPFTHVRLLDQQNPEEDF 303
Score = 24.9 bits (53), Expect = 6.2
Identities = 4/33 (12%), Positives = 9/33 (27%)
Query: 6 RTGRQGIFPSAYAVDVEYEDLQTTTPKPKRERF 38
G++G+ P Y + +
Sbjct: 175 SEGKRGMIPVPYVEKYRPASASVSALIGGNQEG 207
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 24.3 bits (53), Expect = 5.4
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 8 GRQGIFPSAYAVDVEYEDLQTTTPKP 33
G+ G FPS Y + L
Sbjct: 59 GQVGWFPSNYVTEEGDSPLGDHVGSG 84
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 24.3 bits (53), Expect = 6.0
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 8 GRQGIFPSAY-AVDVEYEDLQTTTPKP 33
G+FPS + ++ E P
Sbjct: 59 RGIGLFPSNFVTTNLNIETEAAAVSGP 85
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 25.0 bits (53), Expect = 7.3
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 8 GRQGIFPSAYAVDVEYEDLQTTTPKPKRERFLLGYLGSVETSAHKGNAVICQAVHK 63
G GIFP ++ V + + + P + S + + K
Sbjct: 216 GATGIFPLSF-VKILKDFPEEDDPTNWLRCYYYEDTISTIKDIAVEEDLSSTPLLK 270
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 24.6 bits (53), Expect = 7.5
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 6 RTGRQGIFPSAYAVDVEYEDLQTTTPKPKRERFL 39
G+ G P Y + P+ K E L
Sbjct: 41 LNGKDGFIPKNYIEMKPHPWFFGKIPRAKAEEML 74
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR
{Homo sapiens}
Length = 88
Score = 24.0 bits (52), Expect = 7.9
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 8 GRQGIFPSAYAVDVEYEDLQTTTPKP 33
GR+G+FP + + ++ P
Sbjct: 60 GRKGLFPFTHVKIFDPQNPDENESGP 85
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 24.3 bits (53), Expect = 9.7
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 64 IRQTQHRPHSCILEVSDEGLRMVEKSRP 91
+R+ + CIL+VS +R ++ +
Sbjct: 187 VREVAEQGKHCILDVSANAVRRLQAAHL 214
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.130 0.368
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,485,512
Number of extensions: 72807
Number of successful extensions: 325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 167
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.3 bits)