RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy369
(107 letters)
>d1ddma_ b.55.1.2 (A:) Numb {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 135
Score = 54.2 bits (130), Expect = 2e-11
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 38 FLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPHSCILEVSDEGLRMVEKSRPT 92
F + YLG VE +G V +A+ +RQ++ RP +L VS +GLR+V+
Sbjct: 17 FSVKYLGCVEVFESRGMQVCEEALKVLRQSRRRPVRGLLHVSGDGLRVVDDETKG 71
>d1wj1a_ b.55.1.2 (A:) Numb {Mouse (Mus musculus) [TaxId: 10090]}
Length = 156
Score = 49.2 bits (117), Expect = 3e-09
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 38 FLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPHSCILEVSDEGLRMVEKSRPT 92
F + YLG VE +G + AV +++ T + +L VS +GLR+V++
Sbjct: 28 FPVKYLGHVEVDESRGMHICEDAVKRLKATGKKAVKAVLWVSADGLRVVDEKTKD 82
>d1wvha1 b.55.1.2 (A:1606-1738) Tensin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 133
Score = 47.7 bits (113), Expect = 8e-09
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 42 YLGSVETSAHKGNAVICQAVHKIR--QTQHRPHSCILEVSDEGLRMVEKSRP 91
++ SVE + G I +AV + +VS +G+ + + R
Sbjct: 7 FINSVEMESLTGPQAISKAVAETLVADPTPTATIVHFKVSAQGITLTDNQRK 58
>d2dkqa1 b.55.1.2 (A:8-154) Tensin {Human (Homo sapiens) [TaxId:
9606]}
Length = 147
Score = 46.5 bits (110), Expect = 2e-08
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 42 YLGSVETSAHKGNAVICQAVHKIRQT--QHRPHSCILEVSDEGLRMVEKSR 90
YL SVET + G + +A + P +VS +G+ + + R
Sbjct: 18 YLTSVETESLTGPQAVARASSAALSCSPRPTPAVVHFKVSAQGITLTDNQR 68
>d1wgua_ b.55.1.2 (A:) Amyloid beta A4 precursor protein-binding
family B member 2, Apbb2 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 136
Score = 45.1 bits (106), Expect = 8e-08
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 28 TTTPKPKRE---RFLLGYLGSVETSAHKGNAVICQAVHKIRQTQHRPHS--CILEVSDEG 82
++ P PK E +F + YLG + G + A+ + + + + V+D
Sbjct: 5 SSGPTPKTELVQKFRVQYLGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADAT 64
Query: 83 LRMVEKSRP 91
+ ++ +
Sbjct: 65 VTVISEKNE 73
>d1ntva_ b.55.1.2 (A:) Disabled homolog 1 (Dab1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 152
Score = 43.5 bits (102), Expect = 4e-07
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 37 RFLLGYLGSVETSAHKGNAVICQAVHKI-------RQTQHRPHSCILEVSDEGLRMVE 87
R+ +G E SA +G+ + ++ K+ R L +S G+++ +
Sbjct: 19 RYKAKLIGIDEVSAARGDKLCQDSMMKLKGVVAGARSKGEHKQKIFLTISFGGIKIFD 76
>d1p3ra_ b.55.1.2 (A:) Disabled homolog 2 (Dab2) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 148
Score = 42.6 bits (100), Expect = 6e-07
Identities = 6/58 (10%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 37 RFLLGYLGSVETSAHKGNAVICQAVHKI-------RQTQHRPHSCILEVSDEGLRMVE 87
++ +G + +G+ + ++ K+ R + +S G+++++
Sbjct: 18 KYKAKLIGIDDVPDARGDKMSQDSMMKLKGMAAAGRSQGQHKQRIWVNISLSGIKIID 75
>d2cy5a1 b.55.1.2 (A:31-159) EPS8-like protein 1, EPS8L1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 129
Score = 37.7 bits (87), Expect = 4e-05
Identities = 8/60 (13%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 37 RFLLGYLGSVETSAHKGNAVICQAVHKI----RQTQHRPHSCILEVSDEGLRMVEKSRPT 92
++ + +L + G + A K+ Q + +L VS + +++
Sbjct: 5 QYHVNHLVTFCLGEEDGVHTVEDASRKLAVMDSQGRVWAQEMLLRVSPSQVTLLDPVSKE 64
>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 58
Score = 29.3 bits (66), Expect = 0.020
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 1 MGVNLRTGRQGIFPSAY 17
+G + G +G+FPS Y
Sbjct: 37 LGELEKDGSKGLFPSNY 53
>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 69
Score = 29.5 bits (66), Expect = 0.021
Identities = 6/17 (35%), Positives = 6/17 (35%)
Query: 1 MGVNLRTGRQGIFPSAY 17
G N T G FP
Sbjct: 48 EGRNTATNEVGWFPCNR 64
>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 28.9 bits (65), Expect = 0.027
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 1 MGVNLRTGRQGIFPSAY 17
G RTGR G+ P+ Y
Sbjct: 40 YGTVQRTGRTGMLPANY 56
>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 57
Score = 28.5 bits (64), Expect = 0.031
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 1 MGVNLRTGRQGIFPSAY 17
+L TG G PS Y
Sbjct: 37 EARSLTTGETGYIPSNY 53
>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 28.7 bits (64), Expect = 0.040
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 1 MGVNLRTGRQGIFPSAYAVDVEYEDLQTTTPK 32
+ GR+GI P+ Y V+ + K
Sbjct: 43 YKAKNKVGREGIIPANY---VQKREGVKAGTK 71
>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 64
Score = 28.2 bits (63), Expect = 0.057
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 1 MGVNLRTGRQGIFPSAY 17
+ +L TG+ G PS Y
Sbjct: 39 LAHSLSTGQTGYIPSNY 55
>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human
(Homo sapiens) [TaxId: 9606]}
Length = 65
Score = 28.2 bits (63), Expect = 0.060
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 1 MGVNLRTGRQGIFPSAY 17
+L T ++G PS Y
Sbjct: 40 KARSLATRKEGYIPSNY 56
>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha
subunit, pi3k), SH3 domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 83
Score = 28.2 bits (62), Expect = 0.075
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 1 MGVNLRTGRQGIFPSAY 17
G N TG +G FP Y
Sbjct: 55 NGYNETTGERGDFPGTY 71
>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 26.7 bits (59), Expect = 0.16
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 1 MGVNLRTGRQGIFPSAY 17
+L TG++G P +
Sbjct: 42 KAQSLTTGQEGFIPFNF 58
>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 26.7 bits (59), Expect = 0.18
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 6 RTGRQGIFPSAYAVDVEYEDLQT 28
+ G +G PS Y + +L
Sbjct: 43 KYGSEGYIPSNYVTGKKSNNLDQ 65
>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN
cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 72
Score = 27.1 bits (60), Expect = 0.18
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 1 MGVNLRTGRQGIFPSAY 17
G + T +G FPS+Y
Sbjct: 46 YGEHDTTKARGWFPSSY 62
>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 96
Score = 26.6 bits (58), Expect = 0.34
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 1 MGVNLRTGRQGIFPSAY------AVDVEYEDLQTTTPKPKRERFLLGY 42
+ + T G PS ++ +D +++ RE +L Y
Sbjct: 47 VHSDSETDDIGFIPSKRRVERREWSRLKAKDWGSSSGSQGREDSVLSY 94
>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 58
Score = 25.8 bits (57), Expect = 0.36
Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 4/21 (19%)
Query: 6 RTGRQGIFPSAYAVDVEYEDL 26
G+FPS + V DL
Sbjct: 42 NHRGTGLFPSNF---VT-TDL 58
>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 55
Score = 25.8 bits (57), Expect = 0.40
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 6 RTGRQGIFPSAY 17
RQG P+AY
Sbjct: 40 VNDRQGFVPAAY 51
>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 67
Score = 26.0 bits (57), Expect = 0.45
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 5 LRTGRQGIFPSAY 17
+ G G P Y
Sbjct: 51 TKNGNIGYIPYNY 63
>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2
(GRB2), N- and C-terminal domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 56
Score = 25.4 bits (56), Expect = 0.51
Identities = 4/12 (33%), Positives = 5/12 (41%)
Query: 6 RTGRQGIFPSAY 17
G+ G P Y
Sbjct: 41 LNGKDGFIPKNY 52
>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 67
Score = 25.5 bits (56), Expect = 0.65
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 5 LRTGRQGIFPSAYAVDVE 22
+ G++G PS Y + E
Sbjct: 48 DKNGQEGYIPSNYVTEAE 65
>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 57
Score = 25.1 bits (55), Expect = 0.70
Identities = 5/12 (41%), Positives = 5/12 (41%)
Query: 6 RTGRQGIFPSAY 17
QG PS Y
Sbjct: 41 TKNGQGWVPSNY 52
>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 57
Score = 25.0 bits (55), Expect = 0.79
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 5 LRTGRQGIFPSAY 17
G++G+ P Y
Sbjct: 41 DSEGKRGMIPVPY 53
>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 96
Score = 25.5 bits (55), Expect = 0.89
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 1 MGVNLRTGRQGIFPSAYAVDVEYEDLQTTTPKP 33
L G++G+ PS + V+ + + +
Sbjct: 60 YEGELLDGQRGLVPSNFVDFVQDNESRLASTSG 92
>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 83
Score = 25.3 bits (55), Expect = 0.98
Identities = 3/16 (18%), Positives = 6/16 (37%)
Query: 2 GVNLRTGRQGIFPSAY 17
+G+FP +
Sbjct: 63 QHKELEKCRGVFPENF 78
>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2
(GRB2), N- and C-terminal domains {Caenorhabditis
elegans, SEM-5 [TaxId: 6239]}
Length = 58
Score = 24.6 bits (54), Expect = 1.1
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 7 TGRQGIFPSAY 17
R+GIFPS Y
Sbjct: 43 NNRRGIFPSNY 53
>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2
(GRB2), N- and C-terminal domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 56
Score = 24.3 bits (53), Expect = 1.1
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 7 TGRQGIFPSAY 17
G+ G+FP Y
Sbjct: 42 HGQTGMFPRNY 52
>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 57
Score = 24.3 bits (53), Expect = 1.2
Identities = 4/11 (36%), Positives = 7/11 (63%)
Query: 7 TGRQGIFPSAY 17
+ G+FP+ Y
Sbjct: 42 HNKLGLFPANY 52
>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 24.9 bits (54), Expect = 1.3
Identities = 4/31 (12%), Positives = 14/31 (45%)
Query: 1 MGVNLRTGRQGIFPSAYAVDVEYEDLQTTTP 31
+ + ++G FP+++ + + + P
Sbjct: 47 LQARGKKRQKGWFPASHVKLLGPSSERASGP 77
>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 98
Score = 24.9 bits (54), Expect = 1.5
Identities = 7/28 (25%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 7 TGRQGIFPSAYAVDVEYEDLQTTTPKPK 34
+G++G FP+++ V + + TP
Sbjct: 6 SGQKGWFPASH-VKLLGPSSERATPAFH 32
Score = 23.7 bits (51), Expect = 3.4
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 6 RTGRQGIFPSAY 17
G G+FPS Y
Sbjct: 74 INGVTGLFPSNY 85
>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId:
9606]}
Length = 62
Score = 23.9 bits (52), Expect = 2.1
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 7 TGRQGIFPSAY 17
G+ GIFP +
Sbjct: 46 KGKVGIFPKVF 56
>d1aqca_ b.55.1.2 (A:) X11 {Human (Homo sapiens) [TaxId: 9606]}
Length = 166
Score = 24.7 bits (53), Expect = 2.5
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 20/71 (28%)
Query: 37 RFLLGYLGSVETSAHKG------NAVICQAVHKIRQTQHRPHS--------------CIL 76
F YLGS + + K +AV +I+ Q S L
Sbjct: 9 IFAANYLGSTQLLSDKTPSKNVRMMQAQEAVSRIKMAQKLAKSRKKAPEGESQPMTEVDL 68
Query: 77 EVSDEGLRMVE 87
+ + ++++
Sbjct: 69 FILTQRIKVLN 79
>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 24.0 bits (52), Expect = 2.5
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 6 RTGRQGIFPSAYAVDVEYED 25
GR G FPS Y +++ +
Sbjct: 50 LNGRTGWFPSNYVREIKSSE 69
>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 71
Score = 23.6 bits (51), Expect = 2.6
Identities = 6/17 (35%), Positives = 8/17 (47%), Gaps = 1/17 (5%)
Query: 1 MGVNLRTGRQGIFPSAY 17
N R G+ G+ P Y
Sbjct: 45 KCKNAR-GQVGLVPKNY 60
>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 23.6 bits (51), Expect = 2.6
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 5 LRTGRQGIFPSAY 17
+Q FPS Y
Sbjct: 46 YGGKKQLWFPSNY 58
>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 58
Score = 23.6 bits (51), Expect = 2.8
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 6 RTGRQGIFPSAY 17
GR+GIFP+ Y
Sbjct: 43 VNGREGIFPANY 54
>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 63
Score = 23.6 bits (51), Expect = 2.9
Identities = 2/11 (18%), Positives = 4/11 (36%)
Query: 7 TGRQGIFPSAY 17
++G P
Sbjct: 48 NDKEGYVPRNL 58
>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 69
Score = 23.6 bits (51), Expect = 3.5
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 6 RTGRQGIFPSAY 17
R GIFPS Y
Sbjct: 47 IGDRSGIFPSNY 58
>d1mtyd_ a.25.1.2 (D:) Methane monooxygenase hydrolase alpha subunit
{Methylococcus capsulatus [TaxId: 414]}
Length = 512
Score = 24.4 bits (53), Expect = 3.8
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 40 LGYLGSVETSAHKGNAVICQAVHKIRQTQH 69
G L +A + N + Q + +IR T
Sbjct: 107 TGMLWDSAQAAEQKNGYLAQVLDEIRHTHQ 136
>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 23.3 bits (50), Expect = 3.8
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 6 RTGRQGIFPSAY 17
G+ G+ P Y
Sbjct: 51 LNGKTGLIPENY 62
>d1qlma_ d.147.1.1 (A:) Methenyltetrahydromethanopterin
cyclohydrolase {Archaeon Methanopyrus kandleri [TaxId:
2320]}
Length = 316
Score = 24.3 bits (53), Expect = 3.8
Identities = 6/11 (54%), Positives = 10/11 (90%)
Query: 91 PTSSVSGTVQI 101
PT+S+ G+VQ+
Sbjct: 170 PTASIVGSVQV 180
>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 23.3 bits (50), Expect = 3.9
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 6 RTGRQGIFPSAY 17
G++G PS Y
Sbjct: 57 VNGKKGYVPSNY 68
>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 23.1 bits (49), Expect = 5.3
Identities = 6/29 (20%), Positives = 9/29 (31%)
Query: 6 RTGRQGIFPSAYAVDVEYEDLQTTTPKPK 34
G G FP Y + + + K
Sbjct: 47 FQGNFGWFPCNYVEKMPSSENEKAVSPKK 75
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 23.8 bits (50), Expect = 5.3
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 61 VHKIRQTQHRPHSCILEVSDEGLRMVEKS 89
+ K+R T H ++D G+ +
Sbjct: 209 ILKLRGTSHMKGEYPFTITDHGINIFPLG 237
>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 74
Score = 22.8 bits (49), Expect = 5.5
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 6 RTGRQGIFPSAY 17
G +G FP +Y
Sbjct: 49 VHGGRGWFPKSY 60
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 23.4 bits (49), Expect = 9.0
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 61 VHKIRQTQHRPHSCILEVSDEGLRMVEKSRPTSSV-SGT 98
V K+R + H +SD+G + + R + SG+
Sbjct: 200 VFKMRGSWHDKAIREFMISDKGPDIKDSFRNFERIISGS 238
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.130 0.368
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 350,065
Number of extensions: 13319
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 53
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)