Query psy3691
Match_columns 137
No_of_seqs 202 out of 1326
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 23:09:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3691.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3691hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wno_A Tumor necrosis factor-i 100.0 5.3E-28 1.8E-32 166.6 13.9 108 1-110 11-124 (149)
2 1spp_A Major seminal plasma gl 99.9 1E-27 3.5E-32 157.1 10.6 96 2-105 11-106 (109)
3 1spp_B Major seminal plasma gl 99.9 2.3E-27 7.9E-32 156.9 11.4 98 1-105 13-110 (116)
4 1sfp_A ASFP; spermadhesin, bov 99.9 3.2E-27 1.1E-31 155.7 11.2 98 1-105 14-111 (114)
5 3poj_A Mannan-binding lectin s 99.9 5.1E-27 1.7E-31 154.7 11.3 97 2-104 10-115 (115)
6 1nzi_A Complement C1S componen 99.9 4.5E-26 1.5E-30 157.7 11.7 105 1-111 1-121 (159)
7 1szb_A Mannose binding lectin- 99.9 2.7E-25 9.3E-30 155.6 13.3 105 1-111 8-128 (170)
8 3dem_A Complement factor MAsp- 99.9 3.6E-24 1.2E-28 160.0 12.0 98 2-105 172-278 (278)
9 2qqo_A Neuropilin-2; VEGF rece 99.9 7.7E-24 2.6E-28 168.4 14.4 104 1-106 12-127 (460)
10 2qqm_A Neuropilin-1; VEGF rece 99.9 3.7E-24 1.2E-28 169.8 12.4 104 1-106 15-130 (450)
11 4gz9_A Neuropilin-1, A5 protei 99.9 3.6E-24 1.2E-28 174.5 12.5 107 1-109 133-251 (577)
12 1nt0_A MAsp2, mannose-binding 99.9 1.1E-23 3.6E-28 158.4 12.8 100 2-107 171-279 (286)
13 4gz9_A Neuropilin-1, A5 protei 99.9 2.2E-23 7.7E-28 169.8 13.4 101 4-105 17-123 (577)
14 3kq4_B Cubilin; protein-protei 99.9 3.1E-23 1E-27 164.5 13.2 102 1-104 238-345 (457)
15 1nt0_A MAsp2, mannose-binding 99.9 2.5E-23 8.7E-28 156.3 12.0 103 1-109 4-122 (286)
16 3dem_A Complement factor MAsp- 99.9 5E-23 1.7E-27 153.8 12.6 103 1-109 5-123 (278)
17 4aqb_A Mannan-binding lectin s 99.9 4.6E-23 1.6E-27 159.1 12.2 102 1-108 5-122 (361)
18 2qqk_A Neuropilin-2; VEGF rece 99.9 9.5E-23 3.2E-27 166.0 13.5 101 4-105 14-120 (579)
19 2qqk_A Neuropilin-2; VEGF rece 99.9 2.9E-22 9.9E-27 163.1 14.4 103 2-106 132-246 (579)
20 4aqb_A Mannan-binding lectin s 99.9 6.4E-22 2.2E-26 152.6 12.8 103 2-110 172-283 (361)
21 3kq4_B Cubilin; protein-protei 99.9 3.6E-22 1.2E-26 158.4 10.9 102 2-105 122-230 (457)
No 1
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens}
Probab=99.96 E-value=5.3e-28 Score=166.56 Aligned_cols=108 Identities=21% Similarity=0.207 Sum_probs=97.7
Q ss_pred CCCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEee----eeceEEEEecCCCCCCceeEEeeCCccCC
Q psy3691 1 LSDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVFSGLMYEG 74 (137)
Q Consensus 1 lt~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~le----c~~D~l~I~dg~~~~~~~l~~~cG~~~p~ 74 (137)
|++.+|.|+| ||..||++.+|.|+|+++. +++|+|+|.+|+|| |.+|||+||||....++++++|||...|.
T Consensus 11 l~~~~G~i~SP~yP~~Yp~n~~C~W~I~~~~--g~~I~L~F~~f~le~~~~C~~D~l~I~dg~~~~~~~~~~~CG~~~p~ 88 (149)
T 2wno_A 11 FTDPKQIFKSPGFPNEYEDNQICYWHIRLKY--GQRIHLSFLDFDLEDDPGCLADYVEIYDSYDDVHGFVGRYCGDELPD 88 (149)
T ss_dssp ECSSEEEEECTTTTSCCCTTCEEEEEEECCT--TCEEEEEEEEEECCCCTTCCSSEEEEESSSSSSSSEEEEECSSSCCC
T ss_pred EECCceEEECCCCCcCCCCCCEEEEEEEECC--CCEEEEEEEEEEecCCCCCCCCEEEEecCCCCCcceeeeEcCCCCCC
Confidence 4567899996 9999999999999999998 99999999999997 88999999999887788999999999898
Q ss_pred CeEEeCCeEEEEEEcCCCcCCCCeEEEEEeeeeeee
Q psy3691 75 DYSIHRVPDVKCFTITNELGNTGIQIVLGNDFVQLW 110 (137)
Q Consensus 75 ~~~s~~~~~~v~f~sd~~~~~~GF~~~y~~~~~~~~ 110 (137)
.+.+.++.++|.|.+|.....+||++.|.......+
T Consensus 89 ~~~S~~n~l~v~F~Sd~~~~~~GF~a~y~~~~~~~~ 124 (149)
T 2wno_A 89 DIISTGNVMTLKFLSDASVTAGGFQIKYVAMDPVSK 124 (149)
T ss_dssp CEECSSSEEEEEEECCSSCCCCEEEEEEEEECC---
T ss_pred CEEEeCCEEEEEEEECCCCCCCCEEEEEEEECCCcc
Confidence 999999999999999999999999999998765544
No 2
>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=99.95 E-value=1e-27 Score=157.07 Aligned_cols=96 Identities=14% Similarity=0.218 Sum_probs=87.5
Q ss_pred CCCcEEEEeCCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEeeeeceEEEEecCCCCCCceeEEeeCCccCCCeEEeCC
Q psy3691 2 SDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVHAPLLGVFSGLMYEGDYSIHRV 81 (137)
Q Consensus 2 t~~~G~i~syP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~lec~~D~l~I~dg~~~~~~~l~~~cG~~~p~~~~s~~~ 81 (137)
++.+|.|+| | ||++.+|.|+|+++. |++|+|+|.+|+++|.+|||+||||... ++++++|||.. |..+.+ ++
T Consensus 11 ~~~~G~i~S-P--Yp~~~~C~w~I~~~~--g~~I~l~f~~f~l~C~~D~l~I~dg~~~-~~~~~~~CG~~-p~~~~S-~n 82 (109)
T 1spp_A 11 TDDYGTIFT-Y--KGPKTECVWTLQVDP--KYKLLVSIPTLNLTCGKEYVEVLEGAPG-SKSLGKFCEGL-SILNRG-SS 82 (109)
T ss_dssp ECSEEEEEC-C--CSSCSEEEEEEECCT--TSEEEEEEEEEECCTTTEEEEEESSSTT-SCEEEEESEEE-EEEEEE-CT
T ss_pred eCCcEEEeC-C--CCCCCcEEEEEEcCC--CCEEEEEEeeeeccCCCCEEEEEeCCCC-CchhhhhhCCC-CCCEEE-CC
Confidence 456788887 4 999999999999998 9999999999999999999999999865 77899999986 667888 99
Q ss_pred eEEEEEEcCCCcCCCCeEEEEEee
Q psy3691 82 PDVKCFTITNELGNTGIQIVLGND 105 (137)
Q Consensus 82 ~~~v~f~sd~~~~~~GF~~~y~~~ 105 (137)
.++|.|.+|....++||++.|...
T Consensus 83 ~l~v~F~Sd~~~~~~GF~~~y~~~ 106 (109)
T 1spp_A 83 GMTVKYKRDSGHPASPYEIIFLRD 106 (109)
T ss_dssp TCEEEEEECTTCCCCCCEEEEEEE
T ss_pred EEEEEEEeCCCCCCCCEEEEEEEe
Confidence 999999999999999999999865
No 3
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=99.95 E-value=2.3e-27 Score=156.91 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=89.3
Q ss_pred CCCCcEEEEeCCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEeeeeceEEEEecCCCCCCceeEEeeCCccCCCeEEeC
Q psy3691 1 LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVHAPLLGVFSGLMYEGDYSIHR 80 (137)
Q Consensus 1 lt~~~G~i~syP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~lec~~D~l~I~dg~~~~~~~l~~~cG~~~p~~~~s~~ 80 (137)
|++.+|.|+| | ||++.+|.|+|+++. |++|+|+|.+|+|+|.+|||+||||... ++++++|||.. |..+.+.+
T Consensus 13 l~~~~G~i~S-P--Yp~~~~C~w~I~~~~--g~~I~l~f~~f~l~C~~D~l~i~dg~~~-~~~~~~~CG~~-p~~~~S~~ 85 (116)
T 1spp_B 13 IKDTSGSISN-T--DRQKNLCTWTILMKP--DQKVRMAIPYLNLACGKEYVEVFDGLLS-GPSYGKLCAGA-AIVFLSTA 85 (116)
T ss_dssp ECCSEEEEEC-C--SSCCSEEEEEEECCT--TCEEEEEEEEEECCBTTEEEEEESSSTT-SCEEEEESEEE-EEEEECSS
T ss_pred EeCCceEEeC-C--CcCCCCEEEEEEeCC--CCEEEEEEeeCcccCCCCEEEEEcCCCC-CcccccccCcC-CCCEEecC
Confidence 3566788886 4 899999999999998 9999999999999999999999999876 78899999987 77788889
Q ss_pred CeEEEEEEcCCCcCCCCeEEEEEee
Q psy3691 81 VPDVKCFTITNELGNTGIQIVLGND 105 (137)
Q Consensus 81 ~~~~v~f~sd~~~~~~GF~~~y~~~ 105 (137)
+.++|.|.+|....++||++.|...
T Consensus 86 n~l~v~F~Sd~~~~~~GF~~~y~~~ 110 (116)
T 1spp_B 86 NTMTIKYNRISGNSSSPFLIYFYGS 110 (116)
T ss_dssp SEEEEEEEESSCSCCCCCEEEEEEE
T ss_pred CEEEEEEEECCCCCCCCEEEEEEEe
Confidence 9999999999999999999999865
No 4
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1
Probab=99.95 E-value=3.2e-27 Score=155.70 Aligned_cols=98 Identities=21% Similarity=0.321 Sum_probs=88.9
Q ss_pred CCCCcEEEEeCCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEeeeeceEEEEecCCCCCCceeEEeeCCccCCCeEEeC
Q psy3691 1 LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVHAPLLGVFSGLMYEGDYSIHR 80 (137)
Q Consensus 1 lt~~~G~i~syP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~lec~~D~l~I~dg~~~~~~~l~~~cG~~~p~~~~s~~ 80 (137)
|++.+|.|+| | ||++.+|.|.|+++. |++|+|+|.+|+++|.+|||+||||... ++++++|||.. |..+.+.+
T Consensus 14 l~~~~G~i~S-p--y~~~~~C~w~I~~~~--g~~I~l~f~~f~l~C~~D~l~i~dg~~~-~~~~~~~CG~~-p~~~~S~~ 86 (114)
T 1sfp_A 14 LKEESGVIAT-Y--YGPKTNCVWTIQMPP--EYHVRVSIQYLQLNCNKESLEIIDGLPG-SPVLGKICEGS-LMDYRSSG 86 (114)
T ss_dssp ECCSEEEEEC-C--CSSCSEEEEEEECCT--TCEEEEEEEEEECCTTTEEEEEESSSTT-SCEEEEESEEE-EEEEECSS
T ss_pred EECCcEEEeC-C--CcCCCCEEEEEEeCC--CCEEEEEEeeeeeecCCCEEEEEcCCCC-CcceeEecCcC-CCCEEecC
Confidence 3567788887 3 889999999999998 9999999999999999999999999874 77899999988 77788889
Q ss_pred CeEEEEEEcCCCcCCCCeEEEEEee
Q psy3691 81 VPDVKCFTITNELGNTGIQIVLGND 105 (137)
Q Consensus 81 ~~~~v~f~sd~~~~~~GF~~~y~~~ 105 (137)
+.+.|.|.+|....++||++.|...
T Consensus 87 n~l~v~F~Sd~~~~~~GF~~~y~~~ 111 (114)
T 1sfp_A 87 SIMTVKYIREPEHPASFYEVLYFQD 111 (114)
T ss_dssp SEEEEEEEECTTSCCCCCEEEEEEE
T ss_pred CeEEEEEEECCCCCCCCEEEEEEEE
Confidence 9999999999999999999999865
No 5
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A
Probab=99.95 E-value=5.1e-27 Score=154.70 Aligned_cols=97 Identities=25% Similarity=0.399 Sum_probs=89.7
Q ss_pred CCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeC-eEEee------eeceEEEEecCCCCCCceeEEeeCCcc
Q psy3691 2 SDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFN-SFATE------CGWDHLYIFDGDSVHAPLLGVFSGLMY 72 (137)
Q Consensus 2 t~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~-~f~le------c~~D~l~I~dg~~~~~~~l~~~cG~~~ 72 (137)
++.+|.|+| ||..||++.+|.|.|+++. |++|+|+|. .|+|| |.+|||+|+||. ..++++||...
T Consensus 10 ~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~--g~~i~l~f~d~f~le~~~~~~C~~D~l~i~dg~----~~~~~~CG~~~ 83 (115)
T 3poj_A 10 TQRTGTITSPDYPNPYPKSSECSYTIDLEE--GFMVTLQFEDIFDIEDHPEVPCPYDYIKIKAGS----KVWGPFCGEKS 83 (115)
T ss_dssp CSSEEEEECTTTTSCCCTTCEEEEEEECCT--TCCCEEEECSCCBBCCCSSSSSCSCEEEEEETT----EEEEEECBSSC
T ss_pred cCCCEEEcCCCCCcCCcCCCeEEEEEEcCC--CCEEEEEEecceecccCCCCCCCCeEEEEEcCC----cccccCcCCCC
Confidence 678899996 9999999999999999998 999999999 59986 779999999994 57899999998
Q ss_pred CCCeEEeCCeEEEEEEcCCCcCCCCeEEEEEe
Q psy3691 73 EGDYSIHRVPDVKCFTITNELGNTGIQIVLGN 104 (137)
Q Consensus 73 p~~~~s~~~~~~v~f~sd~~~~~~GF~~~y~~ 104 (137)
|..+.+.++.++|.|.+|....++||++.|++
T Consensus 84 p~~~~s~~~~l~i~F~Sd~~~~~~GF~~~y~a 115 (115)
T 3poj_A 84 PEPISTQSHSIQILFRSDNSGENRGWRLSYRA 115 (115)
T ss_dssp CCCEECCCSEEEEEEECCSSCCCCBCEEEEEC
T ss_pred CCCEEecCCEEEEEEEcCCCCCCCCEEEEEEC
Confidence 88899999999999999999999999999974
No 6
>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=99.94 E-value=4.5e-26 Score=157.72 Aligned_cols=105 Identities=21% Similarity=0.295 Sum_probs=91.1
Q ss_pred CCCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEee----eeceEEEEecCCCCCCceeEEeeCCccC-
Q psy3691 1 LSDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVFSGLMYE- 73 (137)
Q Consensus 1 lt~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~le----c~~D~l~I~dg~~~~~~~l~~~cG~~~p- 73 (137)
|++.+|.|+| ||..||++.+|.|+|+++. |++|+|+|.+|+|| |.+|||+||||. ..++++||...|
T Consensus 1 ~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~--g~~I~l~f~~f~le~~~~C~~D~l~i~dg~----~~~~~~CG~~~~~ 74 (159)
T 1nzi_A 1 EPTMYGEILSPNYPQAYPSEVEKSWDIEVPE--GYGIHLYFTHLDIELSENCAYDSVQIISGD----TEEGRLCGQRSSN 74 (159)
T ss_dssp CCCSEEEEECTTTTSCCCSSEEEEEEEECCT--TEEEEEEEEEEECCCCGGGCSSEEEEEC-------CCEEECSEECCC
T ss_pred CCCCCEEEECCCCccCCCCCCCEEEEEEeCC--CCEEEEEEeEEEecCCCCCCCCEEEEEeCC----chhcccCCCCCCC
Confidence 6789999996 9999999999999999998 99999999999997 889999999985 478999998764
Q ss_pred -------CCeEEeCCeEEEEEEcCCCcCC--CCeEEEEEeeeeeeee
Q psy3691 74 -------GDYSIHRVPDVKCFTITNELGN--TGIQIVLGNDFVQLWE 111 (137)
Q Consensus 74 -------~~~~s~~~~~~v~f~sd~~~~~--~GF~~~y~~~~~~~~~ 111 (137)
..+.+.++.++|.|.+|....+ +||++.|....+++|.
T Consensus 75 ~~~~P~~~~~~S~~n~l~v~F~Sd~~~~~~~~GF~~~y~~~d~~eC~ 121 (159)
T 1nzi_A 75 NPHSPIVEEFQVPYNKLQVIFKSDFSNEERFTGFAAYYVATDINECT 121 (159)
T ss_dssp CSSCCCSEEEEESSSEEEEEEEECSCCTTCCCEEEEEEEEEECCTTT
T ss_pred cccCCcceeEEecCCeEEEEEEecCccCcccccceeeeecccCcccC
Confidence 2578889999999999988775 9999999987766553
No 7
>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=99.93 E-value=2.7e-25 Score=155.64 Aligned_cols=105 Identities=19% Similarity=0.298 Sum_probs=94.2
Q ss_pred CCCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEee----eeceEEEEecCCCCCCceeEEeeCCc---
Q psy3691 1 LSDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVFSGLM--- 71 (137)
Q Consensus 1 lt~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~le----c~~D~l~I~dg~~~~~~~l~~~cG~~--- 71 (137)
|++.+|.|+| ||..||++.+|.|+|+++. |++|+|+|.+|+|| |.+|||+||||. ..+++|||..
T Consensus 8 l~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~--g~~I~l~f~~f~le~~~~C~~D~l~i~dg~----~~~~~~CG~~~~~ 81 (170)
T 1szb_A 8 PEPVFGRLASPGFPGEYANDQERRWTLTAPP--GYRLRLYFTHFDLELSHLCEYDFVKLSSGA----KVLATLCGQESTD 81 (170)
T ss_dssp CCCCEEEEECTTTTSCCCSSCEEEEEEECCT--TEEEEEEEEEEECCCCTTSCSSEEEEESSS----SEEEEECSBTTTT
T ss_pred EcCCCeEEECCCCCcCCcCCCcEEEEEEcCC--CCEEEEEEEEEEccCCCCCCCCEEEEEeCC----ccccccCCCCCCc
Confidence 5788999996 9999999999999999998 99999999999997 889999999984 5789999987
Q ss_pred ---cC--CCeEEeCCeEEEEEEcCCCcCC--CCeEEEEEeeeeeeee
Q psy3691 72 ---YE--GDYSIHRVPDVKCFTITNELGN--TGIQIVLGNDFVQLWE 111 (137)
Q Consensus 72 ---~p--~~~~s~~~~~~v~f~sd~~~~~--~GF~~~y~~~~~~~~~ 111 (137)
.| ..+.+.++.++|.|.+|....+ .||++.|....+.++.
T Consensus 82 ~~~~P~~~~~~S~~n~l~v~F~Sd~~~~~~~~Gf~~~~~~~di~eC~ 128 (170)
T 1szb_A 82 TERAPGKDTFYSLGSSLDITFRSDYSNEKPFTGFEAFYAAEDIDECQ 128 (170)
T ss_dssp CSSSCTTCCEECSSSEEEEEEECCSCCSSCCCEEEEEEEEEECCTTC
T ss_pred cccCCCCceEEeeCCeEEEEEeccccccCcCcCceeeeeccccCccc
Confidence 46 6788999999999999988876 9999999987776654
No 8
>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Probab=99.91 E-value=3.6e-24 Score=160.03 Aligned_cols=98 Identities=23% Similarity=0.407 Sum_probs=90.8
Q ss_pred CCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCe-EEee------eeceEEEEecCCCCCCceeEEeeCCcc
Q psy3691 2 SDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNS-FATE------CGWDHLYIFDGDSVHAPLLGVFSGLMY 72 (137)
Q Consensus 2 t~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~-f~le------c~~D~l~I~dg~~~~~~~l~~~cG~~~ 72 (137)
++.+|.|+| ||..||++.+|.|+|+++. |++|.|+|.+ |+|| |.+|||+||||. ..+++|||...
T Consensus 172 ~~~~G~i~SP~yP~~Yp~~~~C~w~i~~~~--g~~i~l~f~~~f~le~~~~~~C~~D~l~i~dg~----~~~~~~CG~~~ 245 (278)
T 3dem_A 172 TQRTGVITSPDFPNPYPKSSECLYTIELEE--GFMVNLQFEDIFDIEDHPEVPCPYDYIKIKVGP----KVLGPFCGEKA 245 (278)
T ss_dssp CSSEEEEESTTTTSCCCSSCEEEEEEECCT--TCCEEEEECSCCBBCCCSSSSSSSCEEEEEETT----EEEEEECBSSC
T ss_pred cCCccceeCCCCCCCCCCcCeEEEEEEeCC--CcEEEEEEccccccccCCCCCCCCCEEEEecCC----cccccccCCCC
Confidence 567899996 9999999999999999998 9999999997 9986 889999999994 46899999999
Q ss_pred CCCeEEeCCeEEEEEEcCCCcCCCCeEEEEEee
Q psy3691 73 EGDYSIHRVPDVKCFTITNELGNTGIQIVLGND 105 (137)
Q Consensus 73 p~~~~s~~~~~~v~f~sd~~~~~~GF~~~y~~~ 105 (137)
|..+.++++.++|.|.+|....++||+|+|+++
T Consensus 246 p~~~~s~~~~l~v~F~sd~~~~~~GF~~~y~~~ 278 (278)
T 3dem_A 246 PEPISTQSHSVLILFHSDNSGENRGWRLSYRAA 278 (278)
T ss_dssp CCCEECSCSEEEEEEECCSSCCCCBCEEEEEEC
T ss_pred CCCEEEcCCEEEEEEEECCCCCcCCEEEEEEEC
Confidence 988999999999999999999999999999863
No 9
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Probab=99.91 E-value=7.7e-24 Score=168.35 Aligned_cols=104 Identities=23% Similarity=0.344 Sum_probs=96.4
Q ss_pred CCCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEee----------eeceEEEEecCCCCCCceeEEee
Q psy3691 1 LSDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----------CGWDHLYIFDGDSVHAPLLGVFS 68 (137)
Q Consensus 1 lt~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~le----------c~~D~l~I~dg~~~~~~~l~~~c 68 (137)
|++.+|.|+| ||..||++.+|.|.|+++. |++|.|+|.+|+|| |.+|||+||||....++++++||
T Consensus 12 l~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~--g~~I~L~F~~f~le~~~~~~~~~~C~~D~l~i~dg~~~~~~~~~~~C 89 (460)
T 2qqo_A 12 FTSPNGTIESPGFPEKYPHNLDCTFTILAKP--KMEIILQFLIFDLEHDPLQVGEGDCKYDWLDIWDGIPHVGPLIGKYC 89 (460)
T ss_dssp ECSSEEEEECTTTTSCCCSSCEEEEEEECCT--TCEEEEEEEEEECCCC--------CCSSEEEEESSSTTTSCEEEEEC
T ss_pred EeCCceEEeCCCCCCCCCCCCEEEEEEEcCC--CCEEEEEEEEEEcccccccccCCCCCCCEEEEEcCCCCCCcccceEe
Confidence 3567899996 9999999999999999998 99999999999985 77999999999888788999999
Q ss_pred CCccCCCeEEeCCeEEEEEEcCCCcCCCCeEEEEEeee
Q psy3691 69 GLMYEGDYSIHRVPDVKCFTITNELGNTGIQIVLGNDF 106 (137)
Q Consensus 69 G~~~p~~~~s~~~~~~v~f~sd~~~~~~GF~~~y~~~~ 106 (137)
|...|..+.++++.+.|.|.+|.....+||++.|....
T Consensus 90 G~~~p~~i~S~~n~l~v~F~Sd~~~~~~GF~~~y~~~~ 127 (460)
T 2qqo_A 90 GTKTPSELRSSTGILSLTFHTDMAVAKDGFSARYYLVH 127 (460)
T ss_dssp TTCCCCCEEECSSEEEEEEECCSSCCCCEEEEEEEEEC
T ss_pred CCcCCcCEEeeCCEEEEEEeccceeecCcEEEEEEEEe
Confidence 99989899999999999999999999999999998764
No 10
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Probab=99.91 E-value=3.7e-24 Score=169.76 Aligned_cols=104 Identities=24% Similarity=0.386 Sum_probs=96.5
Q ss_pred CCCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEee----------eeceEEEEecCCCCCCceeEEee
Q psy3691 1 LSDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----------CGWDHLYIFDGDSVHAPLLGVFS 68 (137)
Q Consensus 1 lt~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~le----------c~~D~l~I~dg~~~~~~~l~~~c 68 (137)
|+...|.|+| ||+.||++.+|.|.|++|. |++|+|+|.+|+|| |.+|||+||||....++++++||
T Consensus 15 ~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~--g~~I~l~f~~f~le~~~~~~~~~~C~~D~l~i~dg~~~~~~~~~~~C 92 (450)
T 2qqm_A 15 YTTPSGVIKSPGFPEKYPNSLECTYIVFAPK--MSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFPDVGPHIGRYC 92 (450)
T ss_dssp ECSSEEEEECTTTTSCCCSSCEEEEEEECGG--GCCEEEEEEEEECCCC----CCCSSCSSEEEEESSSTTTSCEEEEEC
T ss_pred EeCCcEEEeCCCCCcCCCCCCeEEEEEEeCC--CCEEEEEEEEEEeEeccCCCCCCCCCCcEEEEecCCCCCCccceeec
Confidence 3567899996 9999999999999999998 99999999999984 78999999999988889999999
Q ss_pred CCccCCCeEEeCCeEEEEEEcCCCcCCCCeEEEEEeee
Q psy3691 69 GLMYEGDYSIHRVPDVKCFTITNELGNTGIQIVLGNDF 106 (137)
Q Consensus 69 G~~~p~~~~s~~~~~~v~f~sd~~~~~~GF~~~y~~~~ 106 (137)
|...|..+.++++.++|.|.+|.....+||++.|....
T Consensus 93 G~~~p~~i~S~~n~l~v~F~Sd~~~~~~GF~~~y~~~~ 130 (450)
T 2qqm_A 93 GQKTPGRIRSSSGILSMVFYTDSAIAKEGFSANYSVLQ 130 (450)
T ss_dssp TTCCCCEEEECSSEEEEEEECCSSCCCCEEEEEEEECC
T ss_pred CCcCCCcEEEcCCEEEEEEEeCCccccCCeEEEEeccc
Confidence 99989899999999999999999999999999999763
No 11
>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H
Probab=99.91 E-value=3.6e-24 Score=174.47 Aligned_cols=107 Identities=23% Similarity=0.387 Sum_probs=99.1
Q ss_pred CCCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEee----------eeceEEEEecCCCCCCceeEEee
Q psy3691 1 LSDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----------CGWDHLYIFDGDSVHAPLLGVFS 68 (137)
Q Consensus 1 lt~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~le----------c~~D~l~I~dg~~~~~~~l~~~c 68 (137)
+++.+|.|+| ||..||++.+|.|.|++|. |++|.|+|.+|+|| |.+|||+||||....++++++||
T Consensus 133 ~~~~~G~i~SPnyP~~Yp~n~~C~W~I~~p~--g~~I~L~F~~F~lE~~~~~~~~~~C~~D~l~I~dG~~~~~~~lg~~C 210 (577)
T 4gz9_A 133 YTAPTGVIKSPGFPEKYPNSLECTYIIFAPK--MSEIILEFESFDLEQDSNPPGGMFCRYDRLEIWDGFPEVGPHIGRYC 210 (577)
T ss_dssp ECSSEEEEECTTTTSCCCSSCEEEEEEECGG--GCCEEEEEEEEECCCCCSCSTTCCCCSSEEEEESSSTTTSCEEEEEC
T ss_pred ecCCCccccCCCCCCCCCCCceEEEEEEECC--CCEEEEEEEEEEeeecCCCCCCCccCccEEEEEcCCCCCCceeEEEe
Confidence 3567899996 9999999999999999998 99999999999996 88999999999988889999999
Q ss_pred CCccCCCeEEeCCeEEEEEEcCCCcCCCCeEEEEEeeeeee
Q psy3691 69 GLMYEGDYSIHRVPDVKCFTITNELGNTGIQIVLGNDFVQL 109 (137)
Q Consensus 69 G~~~p~~~~s~~~~~~v~f~sd~~~~~~GF~~~y~~~~~~~ 109 (137)
|...|..+.+.++.++|.|.+|.+..++||++.|+...-.+
T Consensus 211 G~~~P~~i~S~~n~l~i~F~SD~s~~~~GF~a~y~~v~~~~ 251 (577)
T 4gz9_A 211 GQKTPGRIRSSSGVLSMVFYTDSAIAKEGFSANYSVLQSSI 251 (577)
T ss_dssp SSSCCCCEEECSSEEEEEEECCSSCCCCEEEEEEEECCCCC
T ss_pred CCCCCCCcceeCCEEEEEEEECCCCCCceEEEEEEEEcccc
Confidence 99999999999999999999999999999999999865443
No 12
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1
Probab=99.91 E-value=1.1e-23 Score=158.38 Aligned_cols=100 Identities=24% Similarity=0.333 Sum_probs=89.7
Q ss_pred CCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeC-eEEee------eeceEEEEecCCCCCCceeEEeeCCcc
Q psy3691 2 SDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFN-SFATE------CGWDHLYIFDGDSVHAPLLGVFSGLMY 72 (137)
Q Consensus 2 t~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~-~f~le------c~~D~l~I~dg~~~~~~~l~~~cG~~~ 72 (137)
++.+|.|+| ||..||++.+|.|.|+++. |++|+|+|. .|+|| |.+|||+|+||. +++++|||...
T Consensus 171 ~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~--g~~I~l~f~~~f~le~~~~~~C~~D~l~i~dg~----~~~~~~CG~~~ 244 (286)
T 1nt0_A 171 TGRSGFLSSPEYPQPYPKLSSCAYNIRLEE--GFSITLDFVESFDVEMHPEAQCPYDSLKIQTDK----REYGPFCGKTL 244 (286)
T ss_dssp CSSSEEEECTTTTSCCCSSCEEEEEEECCS--SCEEEEEECSCCBBCCC----C--CEEEEECSS----CEEEEECBSSC
T ss_pred cCCceEEeCCCCCCCCCCCCEEEEEEECCC--ceEEEEEEeceEEeccCCCCCCCCcEEEEEeCC----cceEEEcCCCC
Confidence 567899996 9999999999999999998 999999996 79986 779999999983 67899999999
Q ss_pred CCCeEEeCCeEEEEEEcCCCcCCCCeEEEEEeeee
Q psy3691 73 EGDYSIHRVPDVKCFTITNELGNTGIQIVLGNDFV 107 (137)
Q Consensus 73 p~~~~s~~~~~~v~f~sd~~~~~~GF~~~y~~~~~ 107 (137)
|..+.+.++.++|.|.+|....++||++.|.....
T Consensus 245 p~~~~S~~n~l~i~F~sd~~~~~~GF~~~y~~~~~ 279 (286)
T 1nt0_A 245 PPRIETDSNKVTITFTTDESGNHTGWKIHYTSTAQ 279 (286)
T ss_dssp CCCEECSSSEEEEEEECCSCCCCCBCEEEEEEEC-
T ss_pred CCCEEeeCCEEEEEEEeCCCCCCCCEEEEEEEecC
Confidence 98999999999999999999999999999997653
No 13
>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H
Probab=99.90 E-value=2.2e-23 Score=169.79 Aligned_cols=101 Identities=27% Similarity=0.431 Sum_probs=93.3
Q ss_pred CcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeC-eEEee---eeceEEEEecCCCCCCceeEEeeCCccCCCeE
Q psy3691 4 KSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFN-SFATE---CGWDHLYIFDGDSVHAPLLGVFSGLMYEGDYS 77 (137)
Q Consensus 4 ~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~-~f~le---c~~D~l~I~dg~~~~~~~l~~~cG~~~p~~~~ 77 (137)
.+|.|+| ||..||++.+|.|+|++|+ ++.+|+|+|. .|++| |.+|||+||||....++++++|||...|..+.
T Consensus 17 ~~G~i~SPnyP~~Yp~n~~C~W~I~~p~-~~~~I~L~F~~~f~le~~~C~~Dyl~I~dG~~~~~~~lg~~CG~~~p~~i~ 95 (577)
T 4gz9_A 17 NPGYLTSPGYPHSYHPSEKCEWLIQAPE-PYQRIMINFNPHFDLEDRDCKYDYVEVIDGENEGGRLWGKFCGKIAPSPVV 95 (577)
T ss_dssp SCEEEECTTTTTCCCSSCEEEEEEECSS-TTCCEEEEECSCCBCCCGGGTSSEEEEEESSSTTSEEEEEECSSSCCCCEE
T ss_pred CCEEEeCCCCCCCCCCCCeEEEEEEECC-CCcEEEEEEEeeeeecCCCCCccEEEEEeCCCCCCcEEEEecCCCCCCCEE
Confidence 4699996 9999999999999999997 3579999996 79986 99999999999998899999999999999999
Q ss_pred EeCCeEEEEEEcCCCcCCCCeEEEEEee
Q psy3691 78 IHRVPDVKCFTITNELGNTGIQIVLGND 105 (137)
Q Consensus 78 s~~~~~~v~f~sd~~~~~~GF~~~y~~~ 105 (137)
+.++.++|.|.+|....++||++.|+..
T Consensus 96 S~~n~l~v~F~SD~s~~~~GF~a~y~~~ 123 (577)
T 4gz9_A 96 SSGPFLFIKFVSDYETHGAGFSIRYEIF 123 (577)
T ss_dssp CSSSEEEEEEECCSSCCCCBCEEEEEEC
T ss_pred EeCCeEEEEEEECCCCCCCCeEEEEEEe
Confidence 9999999999999999999999999864
No 14
>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens}
Probab=99.90 E-value=3.1e-23 Score=164.55 Aligned_cols=102 Identities=23% Similarity=0.340 Sum_probs=96.1
Q ss_pred CCCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEee----eeceEEEEecCCCCCCceeEEeeCCccCC
Q psy3691 1 LSDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVFSGLMYEG 74 (137)
Q Consensus 1 lt~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~le----c~~D~l~I~dg~~~~~~~l~~~cG~~~p~ 74 (137)
+++.+|.|+| ||..||++.+|.|.|+++. +++|+|+|.+|++| |.+|||+||||....+++++++||...|.
T Consensus 238 ~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~--~~~i~l~f~~f~le~~~~C~~D~l~i~dg~~~~~~~l~~~CG~~~p~ 315 (457)
T 3kq4_B 238 LTTSSGTFISPNYPMPYYHSSECYWWLKSSH--GSAFELEFKDFHLEHHPNCTLDYLAVYDGPSSNSHLLTQLCGDEKPP 315 (457)
T ss_dssp CCSSEEEEECTTTTSCCCSSCEEEEEECCST--TCCEEEEEEECCCCCCTTCCSSEEEEEESSSTTSEEEEEECSSCCCC
T ss_pred EccCcceeccCCCCCCCCCCCEEEEEEEeCC--CCEEEEEEEeeeecCCCCcCCCEEEEEeCCCCCchhhhhhcCCcCCC
Confidence 4567899996 9999999999999999998 99999999999996 89999999999988889999999999998
Q ss_pred CeEEeCCeEEEEEEcCCCcCCCCeEEEEEe
Q psy3691 75 DYSIHRVPDVKCFTITNELGNTGIQIVLGN 104 (137)
Q Consensus 75 ~~~s~~~~~~v~f~sd~~~~~~GF~~~y~~ 104 (137)
.+.++++.++|.|.+|....++||++.|..
T Consensus 316 ~i~S~~n~l~v~f~sd~~~~~~GF~a~y~~ 345 (457)
T 3kq4_B 316 LIRSSGDSMFIKLRTDEGQQGRGFKAEYRQ 345 (457)
T ss_dssp CEECSSSCEEEEEECCSSCCCCCCEEEEEE
T ss_pred CEEecCCEEEEEEEeCCcccCCeEEEEEEe
Confidence 999999999999999999999999999986
No 15
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1
Probab=99.90 E-value=2.5e-23 Score=156.29 Aligned_cols=103 Identities=19% Similarity=0.285 Sum_probs=88.4
Q ss_pred CCCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEee----eeceEEEEecCCCCCCceeEEeeCCc---
Q psy3691 1 LSDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVFSGLM--- 71 (137)
Q Consensus 1 lt~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~le----c~~D~l~I~dg~~~~~~~l~~~cG~~--- 71 (137)
|++.+|.|+| ||..||++.+|.|+|+++. |++|+|+|..|+|| |.+|||+||||. ..++++||..
T Consensus 4 l~~~~G~i~SP~yP~~Yp~~~~C~w~I~~p~--g~~I~L~F~~f~le~~~~C~~D~l~I~dg~----~~~~~~CG~~~~~ 77 (286)
T 1nt0_A 4 PEPVFGRLVSPGFPEKYGNHQDRSWTLTAPP--GFRLRLYFTHFNLELSYRCEYDFVKLTSGT----KVLATLCGQESTD 77 (286)
T ss_dssp -CCCEEEEECTTTTSCCCSSCCEEEEEECCT--TEEEEEEEEEEECCCCGGGCSSEEEEEETT----EEEEEECSSSCCS
T ss_pred ccCCCceEeCCCCCccCcCCCcEEEEEEcCC--CCEEEEEEEEEEecCCCCCCCcEEEEECCC----eEeceECCCcCCC
Confidence 5788999996 9999999999999999998 99999999999997 889999999984 5789999986
Q ss_pred ---cC--CCeEEeCCeEEEEEEcCCCcCC--CCeEEEEEeeeeee
Q psy3691 72 ---YE--GDYSIHRVPDVKCFTITNELGN--TGIQIVLGNDFVQL 109 (137)
Q Consensus 72 ---~p--~~~~s~~~~~~v~f~sd~~~~~--~GF~~~y~~~~~~~ 109 (137)
.| ..+.+.++.++|.|.+|..... +||++.|......+
T Consensus 78 ~~~~P~~~~~~S~~n~l~v~F~Sd~s~~~~~~GF~a~y~~~~~~~ 122 (286)
T 1nt0_A 78 TERAPGNDTFYSLGPSLKVTFHSDYSNEKPFTGFEAFYAAEDVDE 122 (286)
T ss_dssp SCBCCTTCEEECSSSEEEEEEECCC----CCCEEEEEEEEEECCT
T ss_pred cccCCCCceEEeCCCEEEEEEEeCCcCCcCcccEEEEEEeccCCc
Confidence 46 5688889999999999988775 99999999875443
No 16
>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Probab=99.90 E-value=5e-23 Score=153.80 Aligned_cols=103 Identities=23% Similarity=0.252 Sum_probs=89.4
Q ss_pred CCCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEee----eeceEEEEecCCCCCCceeEEeeCCccC-
Q psy3691 1 LSDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVFSGLMYE- 73 (137)
Q Consensus 1 lt~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~le----c~~D~l~I~dg~~~~~~~l~~~cG~~~p- 73 (137)
|++.+|.|+| ||..||++.+|.|+|+++. |++|+|+|.+|+|| |.+|||+||||. ..++++||...|
T Consensus 5 lt~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~--g~~I~L~F~~f~le~~~~C~~D~l~v~dg~----~~~~~~CG~~~~~ 78 (278)
T 3dem_A 5 LNNMFGQIQSPGYPDSYPSDSEVTWNITVPD--GFRIKLYFMHFNLESSYLCEYDYVKVETED----QVLATFCGRETTD 78 (278)
T ss_dssp --CCEEEEECTTTTSCCCSSEEEEEEEECCT--TEEEEEEEEEEECCCCGGGCSSEEEEECSS----CEEEEECSBSSSS
T ss_pred eccCCceEeCCCCCCCCcCCCcEEEEEEECC--CCEEEEEEEEEEeCCCCCCCCcEEEEecCC----cccceEcCCcCCC
Confidence 5788999996 9999999999999999998 99999999999997 889999999984 468999998643
Q ss_pred -------CCeEEeCCeEEEEEEcCCCcCC--CCeEEEEEeeeeee
Q psy3691 74 -------GDYSIHRVPDVKCFTITNELGN--TGIQIVLGNDFVQL 109 (137)
Q Consensus 74 -------~~~~s~~~~~~v~f~sd~~~~~--~GF~~~y~~~~~~~ 109 (137)
..+.++++.+.|.|.+|..... .||++.|.......
T Consensus 79 ~~~~~~~~~~~S~~n~l~v~F~Sd~~~~~~~~GF~~~y~~~~~~~ 123 (278)
T 3dem_A 79 TEQTPGQEVVLSPGSFMSITFRSDFSNEERFTGFDAHYMAVDVDE 123 (278)
T ss_dssp SSCCCTTCCEECSSSEEEEEEEECSCCCSCCCEEEEEEEEEECCT
T ss_pred cccCCCCccEEecCCeEEEEEecCcccccccceeEEEEEEecccc
Confidence 5688889999999999987764 79999999865543
No 17
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}
Probab=99.89 E-value=4.6e-23 Score=159.06 Aligned_cols=102 Identities=23% Similarity=0.254 Sum_probs=88.1
Q ss_pred CCCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEee----eeceEEEEecCCCCCCceeEEeeCCccC-
Q psy3691 1 LSDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVFSGLMYE- 73 (137)
Q Consensus 1 lt~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~le----c~~D~l~I~dg~~~~~~~l~~~cG~~~p- 73 (137)
|++..|+|+| ||+.||++++|.|+|+++. |++|+|+|.+|+|| |.+|||+|+||. ..++++||...+
T Consensus 5 lt~~~G~i~SP~yP~~Yp~n~~C~W~I~~~~--g~~I~l~F~~f~lE~~~~C~~D~l~i~dg~----~~~~~~cG~~~~~ 78 (361)
T 4aqb_A 5 LNNMFGQIQSPGYPDSYPSDSEVTWNITVPD--GFRIKLYFMHFNLESSYLCEYDYVKVETED----QVLATFCGRETTD 78 (361)
T ss_dssp EESSEEEEECTTTTSCCCSSEEEEEEEECCT--TEEEEEEEEEEECCCCGGGCSSEEEEECSS----CEEEEECSBSSSS
T ss_pred EeCCeEEEeCCCCCCCCCCCCeEEEEEEECC--CCEEEEEEeEEEecCCCCCCceEEEEccCC----cccceeeccccCC
Confidence 5789999996 9999999999999999998 99999999999997 889999999984 456788886433
Q ss_pred -------CCeEEeCCeEEEEEEcCCCcCCC--CeEEEEEeeeee
Q psy3691 74 -------GDYSIHRVPDVKCFTITNELGNT--GIQIVLGNDFVQ 108 (137)
Q Consensus 74 -------~~~~s~~~~~~v~f~sd~~~~~~--GF~~~y~~~~~~ 108 (137)
..+.+.++.++|.|.+|.+..++ ||+++|.+....
T Consensus 79 ~~~~~~~~~~~S~~n~l~v~F~SD~s~~~~~~GF~a~y~~~~~~ 122 (361)
T 4aqb_A 79 TEQTPGQEVVLSPGSFMSITFRSDFSNEERFTGFDAHYMAVDVD 122 (361)
T ss_dssp SSCCCTTCCEECSSSEEEEEEEECSCCCSCCCEEEEEEEEEECC
T ss_pred CccCCCccceeccCCEeEEEEEeCCcccccccccccceeecccc
Confidence 24788899999999999887764 999999876544
No 18
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Probab=99.89 E-value=9.5e-23 Score=165.98 Aligned_cols=101 Identities=30% Similarity=0.444 Sum_probs=91.0
Q ss_pred CcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeC-eEEee---eeceEEEEecCCCCCCceeEEeeCCccCCCeE
Q psy3691 4 KSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFN-SFATE---CGWDHLYIFDGDSVHAPLLGVFSGLMYEGDYS 77 (137)
Q Consensus 4 ~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~-~f~le---c~~D~l~I~dg~~~~~~~l~~~cG~~~p~~~~ 77 (137)
.+|.|+| ||..||++.+|.|+|++|+ ++++|.|+|. .|++| |.+|||+||||....++++++|||...|..+.
T Consensus 14 ~~G~i~SP~yP~~Yp~~~~C~w~I~~p~-~~~~I~l~F~~~f~le~~~C~~D~l~i~dg~~~~~~~l~~~CG~~~p~~i~ 92 (579)
T 2qqk_A 14 DAGYITSPGYPQDYPSHQNCEWIVYAPE-PNQKIVLNFNPHFEIEKHDCKYDFIEIRDGDSESADLLGKHCGNIAPPTII 92 (579)
T ss_dssp SCEEEECTTTTSCCCSSCCEEEEEECSS-TTSEEEEEECSCCBCCCTTSSSSEEEEEESSSTTSEEEEEECTTSCCCCEE
T ss_pred CCeEEeCCCCCCCCcCCCEEEEEEEECC-CCcEEEEEEecccccccCCCCeeEEEEEeCCCCCcceeeeECCCCCCCCEE
Confidence 5799996 9999999999999999996 3689999999 89997 89999999999988889999999999998999
Q ss_pred EeCCeEEEEEEcCCCcCCCCeEEEEEee
Q psy3691 78 IHRVPDVKCFTITNELGNTGIQIVLGND 105 (137)
Q Consensus 78 s~~~~~~v~f~sd~~~~~~GF~~~y~~~ 105 (137)
++++.+.|.|.+|....++||++.|+..
T Consensus 93 S~~n~l~v~F~Sd~~~~~~GF~~~y~~~ 120 (579)
T 2qqk_A 93 SSGSMLYIKFTSDYARQGAGFSLRYEIF 120 (579)
T ss_dssp CSSSEEEEEEECC---CCCBCEEEEEEE
T ss_pred ecCCEEEEEEEECCCCCCCceEEEEEEc
Confidence 9999999999999999999999999865
No 19
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Probab=99.88 E-value=2.9e-22 Score=163.11 Aligned_cols=103 Identities=23% Similarity=0.341 Sum_probs=93.8
Q ss_pred CCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEee----------eeceEEEEecCCCCCCceeEEeeC
Q psy3691 2 SDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----------CGWDHLYIFDGDSVHAPLLGVFSG 69 (137)
Q Consensus 2 t~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~le----------c~~D~l~I~dg~~~~~~~l~~~cG 69 (137)
++.+|.|+| ||..||++.+|.|+|+++. +++|.|+|..|+|| |.+|||+||||....++++++|||
T Consensus 132 ~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~--g~~I~l~F~~f~le~~~~~~~~~~C~~D~l~I~dg~~~~~~~~~~~CG 209 (579)
T 2qqk_A 132 TSPNGTIESPGFPEKYPHNLDCTFTILAKP--KMEIILQFLIFDLEHDPLQVGEGDCKYDWLDIWDGIPHVGPLIGKYCG 209 (579)
T ss_dssp CCSEEEEECTTTTSCCCSSCEEEEEEECCT--TEEEEEEEEEEEC-------------CCEEEEESSSTTTSCEEEEECS
T ss_pred ccCCceecCCCCcccCCCCCeEEEEEEcCC--CCEEEEEEEEEEeecccccccCCCCCCEEEEEEeCCCCCCceeEEeCC
Confidence 567899996 9999999999999999998 99999999999985 789999999998888889999999
Q ss_pred CccCCCeEEeCCeEEEEEEcCCCcCCCCeEEEEEeee
Q psy3691 70 LMYEGDYSIHRVPDVKCFTITNELGNTGIQIVLGNDF 106 (137)
Q Consensus 70 ~~~p~~~~s~~~~~~v~f~sd~~~~~~GF~~~y~~~~ 106 (137)
...|..+.+.++.+.|.|.+|.....+||++.|....
T Consensus 210 ~~~p~~i~S~~n~l~i~F~sd~~~~~~GF~~~y~~~~ 246 (579)
T 2qqk_A 210 TKTPSELRSSTGILSLTFHTDMAVAKDGFSARYYLVH 246 (579)
T ss_dssp SSCCCCEEECSSEEEEEEECCSSCCCCEEEEEEEEEE
T ss_pred CCCCCcEEeeCCeEEEEEeccccccccceEEEEEEEe
Confidence 9999999999999999999999999999999999754
No 20
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}
Probab=99.88 E-value=6.4e-22 Score=152.64 Aligned_cols=103 Identities=22% Similarity=0.348 Sum_probs=92.8
Q ss_pred CCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCe-EEee------eeceEEEEecCCCCCCceeEEeeCCcc
Q psy3691 2 SDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNS-FATE------CGWDHLYIFDGDSVHAPLLGVFSGLMY 72 (137)
Q Consensus 2 t~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~-f~le------c~~D~l~I~dg~~~~~~~l~~~cG~~~ 72 (137)
++.+|.|+| ||..||++.+|.|.|+++. |++|.|+|.+ |+++ |.+|||+|+||. .++++|||...
T Consensus 172 ~~~~G~i~SP~yP~~Yp~~~~C~w~i~~~~--g~~i~l~f~~~~~~e~~~~~~C~~D~l~i~dg~----~~~~~~cG~~~ 245 (361)
T 4aqb_A 172 TQRTGVITSPDFPNPYPKSSECLYTIELEE--GFMVNLQFEDIFDIEDHPEVPCPYDYIKIKVGP----KVLGPFCGEKA 245 (361)
T ss_dssp CSSEEEEESTTTTSCCCSSCEEEEEEECCT--TCEEEEEECSCCBBCCCSSSSSSSSEEEEEETT----EEEEEECBSSC
T ss_pred eCCCcEEecCCCCCCCCCCceeeEEeeecc--CcEEEEEEeecccccCCccCccCCCeEEEeeCC----eeEEeeCCCCC
Confidence 567899996 9999999999999999998 9999999987 5553 889999999983 57899999999
Q ss_pred CCCeEEeCCeEEEEEEcCCCcCCCCeEEEEEeeeeeee
Q psy3691 73 EGDYSIHRVPDVKCFTITNELGNTGIQIVLGNDFVQLW 110 (137)
Q Consensus 73 p~~~~s~~~~~~v~f~sd~~~~~~GF~~~y~~~~~~~~ 110 (137)
|..+.+.++.++|.|.+|....++||+++|++....+.
T Consensus 246 p~~~~s~~n~~~i~F~SD~~~~~~GF~~~y~~~~~~C~ 283 (361)
T 4aqb_A 246 PEPISTQSHSVLILFHSDNSGENRGWRLSYRAAGNECP 283 (361)
T ss_dssp CCCEECSCSEEEEEEECCSCCCCCBCEEEEEEECCEEC
T ss_pred CCCEeecCCeEEEEEEeCCCCCccceEEEEEEccCCCC
Confidence 99999999999999999999999999999998765554
No 21
>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens}
Probab=99.87 E-value=3.6e-22 Score=158.39 Aligned_cols=102 Identities=25% Similarity=0.330 Sum_probs=95.5
Q ss_pred CCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEee-----eeceEEEEecCCCCCCceeEEeeCCccCC
Q psy3691 2 SDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE-----CGWDHLYIFDGDSVHAPLLGVFSGLMYEG 74 (137)
Q Consensus 2 t~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~le-----c~~D~l~I~dg~~~~~~~l~~~cG~~~p~ 74 (137)
++.+|.|+| ||..||++.+|.|.|+++. +++|.|+|.+|+|| |.+|||+|+||....+++++++||...|.
T Consensus 122 ~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~--g~~i~l~f~~f~le~~~~~C~~D~l~i~dg~~~~s~~~~~~cG~~~p~ 199 (457)
T 3kq4_B 122 TDDLGTFTSPNFPNNYPNNWECIYRITVRT--GQLIAVHFTNFSLEEAIGNYYTDFLEIRDGGYEKSPLLGIFYGSNLPP 199 (457)
T ss_dssp CSSCCCEECTTTTSCCCSSCEEEEEECCCS--SCCCEEEEEEEECCCCBTTBCSSEEEEESSSSTTSCEEEEECSSSCCC
T ss_pred ecCcEEECCCCCCCcCCCCceEEEEEEeCC--CCEEEEEEEEEEeecCCCCcccceEEEecCCCCCcceeeeecCCCCCC
Confidence 567899996 9999999999999999998 99999999999994 88899999999988889999999999998
Q ss_pred CeEEeCCeEEEEEEcCCCcCCCCeEEEEEee
Q psy3691 75 DYSIHRVPDVKCFTITNELGNTGIQIVLGND 105 (137)
Q Consensus 75 ~~~s~~~~~~v~f~sd~~~~~~GF~~~y~~~ 105 (137)
.+.+.++.+++.|.+|....++||++.|...
T Consensus 200 ~~~S~~n~l~v~F~sd~~~~~~GF~~~y~~~ 230 (457)
T 3kq4_B 200 TIISHSNKLWLKFKSDQIDTRSGFSAYWDGS 230 (457)
T ss_dssp CEECSSSCEEEEEECCSSCCCCEEEEEEECC
T ss_pred CeEEcCCEEEEEEEeCCCCCcCCEEEEeccc
Confidence 9999999999999999999999999999864
Done!