RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3691
(137 letters)
>gnl|CDD|238001 cd00041, CUB, CUB domain; extracellular domain; present in
proteins mostly known to be involved in development;
not found in prokaryotes, plants and yeast.
Length = 113
Score = 60.9 bits (148), Expect = 4e-13
Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 2 SDKSGIII--DGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFD 55
+ SG I + P NY ++ C W I+A P IRL F F E C +D+L I+D
Sbjct: 7 ASTSGTISSPNYPNNYPNNLNCVWTIEA--PPGYRIRLTFEDFDLESSPNCSYDYLEIYD 64
Query: 56 GDSVHAPLLGVFSG 69
G S +PLLG F G
Sbjct: 65 GPSTSSPLLGRFCG 78
>gnl|CDD|214483 smart00042, CUB, Domain first found in C1r, C1s, uEGF, and bone
morphogenetic protein. This domain is found mostly
among developmentally-regulated proteins. Spermadhesins
contain only this domain.
Length = 102
Score = 55.1 bits (133), Expect = 6e-11
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 12 PGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVF 67
P +Y ++ C W I A P I L F F E C +D++ I+DG S +PLLG F
Sbjct: 9 PQSYPNNLDCVWTIRA--PPGYRIELQFTDFDLESSDNCEYDYVEIYDGPSASSPLLGRF 66
Query: 68 SG 69
G
Sbjct: 67 CG 68
>gnl|CDD|215916 pfam00431, CUB, CUB domain.
Length = 110
Score = 53.5 bits (129), Expect = 3e-10
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 1 LSDKSGII--IDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSF----ATECGWDHLYIF 54
L++ SG I + P +Y + C W I A P I L F F ECG+D++ I
Sbjct: 5 LTESSGSITSPNYPNSYPPNKDCVWTIRA--PPGYRISLTFQDFDLEDHDECGYDYVEIR 62
Query: 55 DGDSVHAPLLGVFSG 69
DG +PLLG F G
Sbjct: 63 DGLPSSSPLLGRFCG 77
>gnl|CDD|211710 TIGR02035, D_Ser_am_lyase, D-serine ammonia-lyase. This family
consists of D-serine ammonia-lyase (EC 4.3.1.18), a
pyridoxal-phosphate enzyme that converts D-serine to
pyruvate and NH3. This enzyme is also called D-serine
dehydratase and D-serine deaminase and was previously
designated EC 4.2.1.14. It is homologous to an enzyme
that acts on threonine and may itself act weakly on
threonine [Energy metabolism, Amino acids and amines].
Length = 431
Score = 28.7 bits (64), Expect = 1.0
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 49 DHLYIFDGDSVHAP--LLGVFSGL 70
DH++ F + H+P LLGV++GL
Sbjct: 289 DHVHCFFAEPTHSPCMLLGVYTGL 312
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional.
Length = 629
Score = 28.8 bits (65), Expect = 1.1
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 8/36 (22%)
Query: 42 FAT-ECGW--DHLYIFDGDSVHAPLLGVFSGLMYEG 74
F + GW H YI V+APLL + +MYEG
Sbjct: 279 FCASDIGWVVGHSYI-----VYAPLLAGMATIMYEG 309
>gnl|CDD|227114 COG4773, FhuE, Outer membrane receptor for ferric coprogen and
ferric-rhodotorulic acid [Inorganic ion transport and
metabolism].
Length = 719
Score = 27.8 bits (62), Expect = 2.0
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 14 NYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDS 58
NY + +K +L +T A R+ N+ AT D Y
Sbjct: 527 NYELGLKGEFLDGRLNTSLALFRIEQNNRATA---DGRYPPGPSG 568
>gnl|CDD|216909 pfam02160, Peptidase_A3, Cauliflower mosaic virus peptidase (A3).
Length = 201
Score = 27.5 bits (61), Expect = 2.3
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 96 TGIQIVLGNDFVQLWEVGNVYLT----HKNELYETSKDLISPKIL 136
+GI ++LGN+F +L+ YL HK L I+ IL
Sbjct: 89 SGIDLILGNNFCKLYNPFIQYLDRIEFHKKNLEPVEIKKITKAIL 133
>gnl|CDD|226091 COG3561, COG3561, Phage anti-repressor protein [Transcription].
Length = 110
Score = 26.6 bits (59), Expect = 2.9
Identities = 5/37 (13%), Positives = 10/37 (27%)
Query: 89 ITNELGNTGIQIVLGNDFVQLWEVGNVYLTHKNELYE 125
+ N + +V + +V Y E
Sbjct: 1 FNGTIKNNTLSLVSARELHWFLDVKTRYSAWFRERIS 37
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase. This family
contains one of three readily separable clades of
proteins in the group of acetate and propionate--CoA
ligases. Characterized members of this family act on
propionate. From propionyl-CoA, there is a cyclic
degradation pathway: it is ligated by PrpC to the TCA
cycle intermediate oxaloacetate, acted upon further by
PrpD and an aconitase, then cleaved by PrpB to pyruvate
and the TCA cycle intermediate succinate.
Length = 628
Score = 27.2 bits (60), Expect = 3.8
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 7/34 (20%)
Query: 43 ATECGW--DHLYIFDGDSVHAPLLGVFSGLMYEG 74
A++ GW H YI V+APLL + ++YEG
Sbjct: 280 ASDVGWVVGHSYI-----VYAPLLAGAATVLYEG 308
>gnl|CDD|226864 COG4457, SrfB, Uncharacterized protein conserved in bacteria,
putative virulence factor [Function unknown].
Length = 1014
Score = 27.1 bits (60), Expect = 3.9
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 22 SWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSV 59
+ L D + + L N+ A E G Y D S+
Sbjct: 974 AELQDGAPVKRPMLELKLNTLADEGGDGSHYWLDTGSI 1011
>gnl|CDD|227610 COG5290, COG5290, IkappaB kinase complex, IKAP component
[Transcription].
Length = 1243
Score = 26.5 bits (58), Expect = 6.8
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 74 GDYSIHRVPDVKCFTITNELGNTGIQIVLGNDFVQLWEVGNVYLTHKNELYETSKDLIS 132
G++ + D K F L +T + + GN ++LW N + K E +
Sbjct: 286 GEFDLRVGCDEKAFLENWNLLSTVLAVAEGN-LLKLWTTKNYHWYLKVERQIPGISYVK 343
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.141 0.442
Gapped
Lambda K H
0.267 0.0690 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,985,555
Number of extensions: 602615
Number of successful extensions: 392
Number of sequences better than 10.0: 1
Number of HSP's gapped: 386
Number of HSP's successfully gapped: 17
Length of query: 137
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 50
Effective length of database: 7,078,804
Effective search space: 353940200
Effective search space used: 353940200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)