RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3691
(137 letters)
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein,
cell adhesion, extracellular matrix; 2.30A {Homo
sapiens}
Length = 149
Score = 63.6 bits (155), Expect = 5e-14
Identities = 18/75 (24%), Positives = 25/75 (33%), Gaps = 8/75 (10%)
Query: 1 LSDKSGII--IDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIF 54
+D I P Y + C W I I L F F E C D++ I+
Sbjct: 11 FTDPKQIFKSPGFPNEYEDNQICYWHIRLK--YGQRIHLSFLDFDLEDDPGCLADYVEIY 68
Query: 55 DGDSVHAPLLGVFSG 69
D +G + G
Sbjct: 69 DSYDDVHGFVGRYCG 83
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 61.4 bits (149), Expect = 4e-13
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 12 PGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVF 67
P Y +V+ SW I+ I L+F E C +D + I GD+ L G
Sbjct: 14 PQAYPSEVEKSWDIEVP--EGYGIHLYFTHLDIELSENCAYDSVQIISGDTEEGRLCGQR 71
Query: 68 SG 69
S
Sbjct: 72 SS 73
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal
fluid protein, CUB domain, X-RAY growth factor; 1.90A
{Bos taurus} SCOP: b.23.1.1
Length = 114
Score = 60.4 bits (147), Expect = 5e-13
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 1 LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVH 60
L ++SG+I Y C W I P +R+ C + L I DG
Sbjct: 14 LKEESGVIAT---YYGPKTNCVWTIQMP--PEYHVRVSIQYLQLNCNKESLEIIDGLP-G 67
Query: 61 APLLGVFSG 69
+P+LG
Sbjct: 68 SPVLGKICE 76
>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease
M disulfide bond, glycoprotein, secreted, transport,
choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo
sapiens}
Length = 457
Score = 61.8 bits (150), Expect = 2e-12
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 1 LSDKSGIII--DGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIF 54
L+ SG I + P Y +C W + +S + L F F E C D+L ++
Sbjct: 238 LTTSSGTFISPNYPMPYYHSSECYWWLKSS--HGSAFELEFKDFHLEHHPNCTLDYLAVY 295
Query: 55 DGDSVHAPLLGVFSG 69
DG S ++ LL G
Sbjct: 296 DGPSSNSHLLTQLCG 310
Score = 57.6 bits (139), Expect = 6e-11
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 1 LSDKSGIII--DGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIF 54
L++ +G I P Y + C+W I PN I L F +F E C D+L ++
Sbjct: 5 LTESTGTIQSPGHPNVYPHGINCTWHILV--QPNHLIHLMFETFHLEFHYNCTNDYLEVY 62
Query: 55 DGDSVHAPLLGVFSG 69
D DS LG + G
Sbjct: 63 DTDS--ETSLGRYCG 75
Score = 54.9 bits (132), Expect = 6e-10
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 12 PGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE-----CGWDHLYIFDGDSVHAPLLGV 66
P NY + +C + I I +HF +F+ E D L I DG +PLLG+
Sbjct: 134 PNNYPNNWECIYRITVR--TGQLIAVHFTNFSLEEAIGNYYTDFLEIRDGGYEKSPLLGI 191
Query: 67 FSG 69
F G
Sbjct: 192 FYG 194
Score = 53.3 bits (128), Expect = 2e-09
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 12 PGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLG 65
P YS + C+W I A T T+ F +F E C D+L ++DG G
Sbjct: 366 PNPYSENQHCNWTIRA--TTGNTVNYTFLAFDLEHHINCSTDYLELYDGPRQMGRYCG 421
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 60.0 bits (145), Expect = 2e-12
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 12 PGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVF 67
PG Y+ D + W + A P +RL+F F E C +D + + G V A L G
Sbjct: 21 PGEYANDQERRWTLTAP--PGYRLRLYFTHFDLELSHLCEYDFVKLSSGAKVLATLCGQE 78
Query: 68 SG 69
S
Sbjct: 79 ST 80
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived
antibody, developmental protein, differentiation,
glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB:
2qql_A
Length = 579
Score = 61.1 bits (148), Expect = 5e-12
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 12 PGNYSIDVKCSWLIDASDTPNATIRLHFNSF----ATECGWDHLYIFDGDSVHAPLLGVF 67
P +Y C W++ A + PN I L+FN +C +D + I DGDS A LLG
Sbjct: 24 PQDYPSHQNCEWIVYAPE-PNQKIVLNFNPHFEIEKHDCKYDFIEIRDGDSESADLLGKH 82
Query: 68 SG 69
G
Sbjct: 83 CG 84
Score = 55.7 bits (134), Expect = 3e-10
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 1 LSDKSGII--IDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----------CGW 48
+ +G I P Y ++ C++ I A P I L F F E C +
Sbjct: 131 FTSPNGTIESPGFPEKYPHNLDCTFTILAK--PKMEIILQFLIFDLEHDPLQVGEGDCKY 188
Query: 49 DHLYIFDGDSVHAPLLGVFSG 69
D L I+DG PL+G + G
Sbjct: 189 DWLDIWDGIPHVGPLIGKYCG 209
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB
domain, EGF like domain., hydrolase, sugar binding
protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP:
b.23.1.1 b.23.1.1 g.3.11.1
Length = 286
Score = 60.4 bits (146), Expect = 5e-12
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 12 PGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVF 67
P Y SW + A P +RL+F F E C +D + + G V A L G
Sbjct: 17 PEKYGNHQDRSWTLTAP--PGFRLRLYFTHFNLELSYRCEYDFVKLTSGTKVLATLCGQE 74
Query: 68 SG 69
S
Sbjct: 75 ST 76
Score = 47.3 bits (112), Expect = 2e-07
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 11/74 (14%)
Query: 1 LSDKSGIII--DGPGNYSIDVKCSWLIDASDTPNATIRLHF-NSFATE------CGWDHL 51
+ +SG + + P Y C++ I +I L F SF E C +D L
Sbjct: 170 FTGRSGFLSSPEYPQPYPKLSSCAYNIRL--EEGFSITLDFVESFDVEMHPEAQCPYDSL 227
Query: 52 YIFDGDSVHAPLLG 65
I + P G
Sbjct: 228 KIQTDKREYGPFCG 241
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma
proteins, spermadhesins, CUB domain architecture,
complex (seminal plasma protein/SPP); 2.40A {Sus
scrofa} SCOP: b.23.1.1
Length = 116
Score = 55.9 bits (135), Expect = 2e-11
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 1 LSDKSGIII--DGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDS 58
+ D SG I D N C+W I P+ +R+ CG +++ +FDG
Sbjct: 13 IKDTSGSISNTDRQKNL-----CTWTILMK--PDQKVRMAIPYLNLACGKEYVEVFDGLL 65
Query: 59 VHAPLLGVFSG 69
P G
Sbjct: 66 -SGPSYGKLCA 75
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding
domain, angiogenesis, developmental protein,
differentiation; HET: NAG FUC; 2.00A {Homo sapiens}
SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Length = 450
Score = 58.5 bits (141), Expect = 3e-11
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 14/88 (15%)
Query: 1 LSDKSGII--IDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----------CGW 48
+ SG+I P Y ++C++++ A + I L F SF E C +
Sbjct: 15 YTTPSGVIKSPGFPEKYPNSLECTYIVFA--PKMSEIILEFESFDLEPDSNPPGGMFCRY 72
Query: 49 DHLYIFDGDSVHAPLLGVFSGLMYEGDY 76
D L I+DG P +G + G G
Sbjct: 73 DRLEIWDGFPDVGPHIGRYCGQKTPGRI 100
>3dem_A Complement factor MAsp-3; complement system, innate immunity,
calcium binding sites, C pathway, EGF-like domain,
glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Length = 278
Score = 57.6 bits (139), Expect = 5e-11
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 12 PGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVF 67
P +Y D + +W I I+L+F F E C +D++ + D V A G
Sbjct: 18 PDSYPSDSEVTWNITVP--DGFRIKLYFMHFNLESSYLCEYDYVKVETEDQVLATFCGRE 75
Query: 68 SG 69
+
Sbjct: 76 TT 77
Score = 48.0 bits (114), Expect = 1e-07
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 15/78 (19%)
Query: 1 LSDKSGIII--DGPGNYSIDVKCSWLIDASDTPNATIRLHFNSF-------ATECGWDHL 51
+ ++G+I D P Y +C + I+ + L F C +D++
Sbjct: 171 FTQRTGVITSPDFPNPYPKSSECLYTIEL--EEGFMVNLQFEDIFDIEDHPEVPCPYDYI 228
Query: 52 YIFDGDSVHAPLLGVFSG 69
I G +LG F G
Sbjct: 229 KIKVGP----KVLGPFCG 242
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding
domain, developmental protein, differentiation,
glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Length = 460
Score = 55.5 bits (133), Expect = 4e-10
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Query: 12 PGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----------CGWDHLYIFDGDSVHA 61
P Y ++ C++ I A P I L F F E C +D L I+DG
Sbjct: 25 PEKYPHNLDCTFTILA--KPKMEIILQFLIFDLEHDPLQVGEGDCKYDWLDIWDGIPHVG 82
Query: 62 PLLGVFSG 69
PL+G + G
Sbjct: 83 PLIGKYCG 90
>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins,
spermadhesins, CUB domain architecture, complex
(seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP:
b.23.1.1
Length = 109
Score = 52.4 bits (126), Expect = 5e-10
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 1 LSDKSGIII--DGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDS 58
L+D G I GP C W + P + + + CG +++ + +G +
Sbjct: 10 LTDDYGTIFTYKGPKTE-----CVWTLQVD--PKYKLLVSIPTLNLTCGKEYVEVLEG-A 61
Query: 59 VHAPLLGVFSG 69
+ LG F
Sbjct: 62 PGSKSLGKFCE 72
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN;
4.20A {Homo sapiens}
Length = 361
Score = 54.6 bits (131), Expect = 6e-10
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 12 PGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVF 67
P +Y D + +W I I+L+F F E C +D++ + D V A G
Sbjct: 18 PDSYPSDSEVTWNITV--PDGFRIKLYFMHFNLESSYLCEYDYVKVETEDQVLATFCGRE 75
Query: 68 SG 69
+
Sbjct: 76 TT 77
Score = 48.1 bits (114), Expect = 1e-07
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 11/74 (14%)
Query: 1 LSDKSGIII--DGPGNYSIDVKCSWLIDASDTPNATIRLHFNSF-------ATECGWDHL 51
+ ++G+I D P Y +C + I+ + L F C +D++
Sbjct: 171 FTQRTGVITSPDFPNPYPKSSECLYTIELE--EGFMVNLQFEDIFDIEDHPEVPCPYDYI 228
Query: 52 YIFDGDSVHAPLLG 65
I G V P G
Sbjct: 229 KIKVGPKVLGPFCG 242
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding
site, complex with ethylamine, COMP protein, lectin
pathway of complement; 1.45A {Rattus norvegicus} PDB:
3pob_A 3pof_A 3pog_A 3poi_A 3poe_A
Length = 115
Score = 47.3 bits (113), Expect = 4e-08
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 13/65 (20%)
Query: 12 PGNYSIDVKCSWLIDASDTPNATIRLHF-NSFATE------CGWDHLYIFDGDSVHAPLL 64
P Y +CS+ ID + L F + F E C +D++ I G +
Sbjct: 22 PNPYPKSSECSYTIDL--EEGFMVTLQFEDIFDIEDHPEVPCPYDYIKIKAGS----KVW 75
Query: 65 GVFSG 69
G F G
Sbjct: 76 GPFCG 80
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.025
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 21/81 (25%)
Query: 1 LSDKSGIIIDGPGNYS--IDVKCSWLIDASDTPNAT-----------IRL----HFNSFA 43
LS+ +D ++ +++ WL + S+TP+ I + H+ A
Sbjct: 195 LSELIRTTLDAEKVFTQGLNIL-EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA 253
Query: 44 TECGWDHLYIFD---GDSVHA 61
G+ + G + H+
Sbjct: 254 KLLGFTPGELRSYLKGATGHS 274
Score = 32.7 bits (74), Expect = 0.028
Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 42/139 (30%)
Query: 21 CSWLIDASDTPNAT--IRLHFNSFATECGWDHLYIFDGDSVHAPLLGVFSGLMYEGDYSI 78
S L++ S + L F +G+ +HA + + L+ E D ++
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENC-------YLEGNDIHA----LAAKLLQENDTTL 116
Query: 79 HRVPDV-KCF----TITNE---------L------GNTGIQIVLGNDFVQLWEVGN--VY 116
+ ++ K + + L GN + + G Q GN Y
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG---Q----GNTDDY 169
Query: 117 LTHKNELYETSKDLISPKI 135
+LY+T L+ I
Sbjct: 170 FEELRDLYQTYHVLVGDLI 188
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase
family S9, hydrolase; 2.80A {Stenotrophomonas
maltophilia}
Length = 741
Score = 25.4 bits (56), Expect = 7.9
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 47 GWDHLYIFDGDSVHAPL 63
G+ HLY D A L
Sbjct: 358 GFQHLYRIDSKGKAAAL 374
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.141 0.442
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,137,515
Number of extensions: 116720
Number of successful extensions: 270
Number of sequences better than 10.0: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 30
Length of query: 137
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 53
Effective length of database: 4,356,429
Effective search space: 230890737
Effective search space used: 230890737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.2 bits)