RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3691
         (137 letters)



>d1szba1 b.23.1.1 (A:3-123) Mannose-binding protein associated
          serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 121

 Score = 35.6 bits (81), Expect = 5e-04
 Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 2/60 (3%)

Query: 12 PGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWD--HLYIFDGDSVHAPLLGVFSG 69
          PG Y+ D +  W + A       +             +   + +  G  V A L G  S 
Sbjct: 19 PGEYANDQERRWTLTAPPGYRLRLYFTHFDLELSHLCEYDFVKLSSGAKVLATLCGQEST 78


>d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 117

 Score = 35.2 bits (80), Expect = 5e-04
 Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 12 PGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGW--DHLYIFDGDSVHAPLLGVFSG 69
          P  Y  +V+ SW I+  +     +               D + I  GD+    L G  S 
Sbjct: 14 PQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELSENCAYDSVQIISGDTEEGRLCGQRSS 73


>d1nt0a2 b.23.1.1 (A:165-278) Mannose-binding protein associated
          serine protease 2, MASP2 {Rat (Rattus norvegicus)
          [TaxId: 10116]}
          Length = 114

 Score = 29.9 bits (66), Expect = 0.048
 Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 3/58 (5%)

Query: 1  LSDKSGIII--DGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDG 56
           + +SG +   + P  Y     C++ I   +  + T+    + F  E   +    +D 
Sbjct: 6  FTGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVES-FDVEMHPEAQCPYDS 62


>d2qqma3 b.23.1.1 (A:156-263) Mannose-binding protein associated
          serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 108

 Score = 29.5 bits (65), Expect = 0.050
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 12/62 (19%)

Query: 12 PGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----------CGWDHLYIFDGDSVHA 61
          P  Y   ++C++++ A     + I L F SF  E          C +D L I+DG     
Sbjct: 9  PEKYPNSLECTYIVFAP--KMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFPDVG 66

Query: 62 PL 63
          P 
Sbjct: 67 PH 68


>d1qfta_ b.60.1.1 (A:) Histamine binding protein {Brown ear tick
           (Rhipicephalus appendiculatus) [TaxId: 34631]}
          Length = 175

 Score = 25.5 bits (55), Expect = 1.9
 Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 2/56 (3%)

Query: 2   SDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGD 57
           SD +  +I  PG    +          D   A     FN +A   G +   +F   
Sbjct: 115 SDDNCDVIYVPGTDGNEEGYELWTTDYDNIPANCLNKFNEYA--VGRETRDVFTSA 168


>d1gaia_ a.102.1.1 (A:) Glucoamylase {Aspergillus awamori, variant
          x100 [TaxId: 105351]}
          Length = 472

 Score = 24.3 bits (52), Expect = 7.2
 Identities = 11/50 (22%), Positives = 17/50 (34%)

Query: 4  KSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYI 53
           SGI++  P   + D   +W  D+       + L  N           YI
Sbjct: 33 DSGIVVASPSTDNPDYFYTWTRDSGLVIKTLVDLFRNGDTDLLSTIEHYI 82


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.141    0.442 

Gapped
Lambda     K      H
   0.267   0.0620    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 535,478
Number of extensions: 23055
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 7
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.5 bits)