BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3694
(61 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1LVE8|SF3B3_DANRE Splicing factor 3B subunit 3 OS=Danio rerio GN=sf3b3 PE=2 SV=1
Length = 1217
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/49 (75%), Positives = 42/49 (85%)
Query: 1 MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
+ACGRGPRST+RVLRHGLEVSEMAVSELP NPNAVWTV+R +D +
Sbjct: 425 VACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAY 473
>sp|Q921M3|SF3B3_MOUSE Splicing factor 3B subunit 3 OS=Mus musculus GN=Sf3b3 PE=2 SV=1
Length = 1217
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 42/49 (85%)
Query: 1 MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
+ACGRGPRS++RVLRHGLEVSEMAVSELP NPNAVWTV+R +D +
Sbjct: 425 VACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAY 473
>sp|Q15393|SF3B3_HUMAN Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4
Length = 1217
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 42/49 (85%)
Query: 1 MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
+ACGRGPRS++RVLRHGLEVSEMAVSELP NPNAVWTV+R +D +
Sbjct: 425 VACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAY 473
>sp|A0JN52|SF3B3_BOVIN Splicing factor 3B subunit 3 OS=Bos taurus GN=SF3B3 PE=2 SV=1
Length = 1217
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 42/49 (85%)
Query: 1 MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
+ACGRGPRS++RVLRHGLEVSEMAVSELP NPNAVWTV+R +D +
Sbjct: 425 VACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAY 473
>sp|Q5RBI5|SF3B3_PONAB Splicing factor 3B subunit 3 OS=Pongo abelii GN=SF3B3 PE=2 SV=1
Length = 1217
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 41/49 (83%)
Query: 1 MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
+ACGRGPRS++RVLRHGLEVSE AVSELP NPNAVWTV+R +D +
Sbjct: 425 VACGRGPRSSLRVLRHGLEVSETAVSELPGNPNAVWTVRRHIEDEFDAY 473
>sp|Q52E49|RSE1_MAGO7 Pre-mRNA-splicing factor RSE1 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=RSE1 PE=3 SV=2
Length = 1216
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 33/46 (71%)
Query: 4 GRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
G+G RST R+L+HGLEV+E+ S+LP P+AVWT K R DD +
Sbjct: 447 GKGARSTFRMLKHGLEVNEIVASQLPGTPSAVWTTKLRRDDEYDAY 492
>sp|P0CR22|RSE1_CRYNJ Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=RSE1 PE=3 SV=1
Length = 1217
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 26/43 (60%), Positives = 30/43 (69%)
Query: 2 ACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDD 44
ACGRG RST R L+HGL+V+EM S LP P VWT+K DD
Sbjct: 445 ACGRGARSTFRTLKHGLDVAEMVSSPLPGVPTNVWTLKLTEDD 487
>sp|P0CR23|RSE1_CRYNB Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=RSE1 PE=3 SV=1
Length = 1217
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 26/43 (60%), Positives = 30/43 (69%)
Query: 2 ACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDD 44
ACGRG RST R L+HGL+V+EM S LP P VWT+K DD
Sbjct: 445 ACGRGARSTFRTLKHGLDVAEMVSSPLPGVPTNVWTLKLTEDD 487
>sp|Q7RYR4|RSE1_NEUCR Pre-mRNA-splicing factor rse-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rse-1 PE=3 SV=2
Length = 1209
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 26/43 (60%), Positives = 31/43 (72%)
Query: 3 CGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDR 45
CG G RST R+L+HGLEVSE+ SELP P+AVWT K D+
Sbjct: 446 CGNGARSTFRMLKHGLEVSEIVASELPGTPSAVWTTKLTKYDQ 488
>sp|Q4PGM6|RSE1_USTMA Pre-mRNA-splicing factor RSE1 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=RSE1 PE=3 SV=1
Length = 1221
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 2 ACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
ACGRG RS+ ++LRHGLEV E S+LP P+AVWT K D +
Sbjct: 443 ACGRGARSSFKMLRHGLEVQEAVSSDLPGVPSAVWTTKITQQDEYDSY 490
>sp|Q5B1X8|RSE1_EMENI Pre-mRNA-splicing factor rse1 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rse1
PE=3 SV=2
Length = 1209
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/42 (64%), Positives = 32/42 (76%), Gaps = 1/42 (2%)
Query: 4 GRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVK-RRSDD 44
G G RST R L+HGLEVSE+ SELPS P+AVWT K R+D+
Sbjct: 444 GTGARSTFRTLKHGLEVSEIVESELPSVPSAVWTTKLTRADE 485
>sp|Q4WLI5|RSE1_ASPFU Pre-mRNA-splicing factor rse1 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rse1 PE=3
SV=1
Length = 1225
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 30/46 (65%)
Query: 4 GRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
G G RS+ R L+HGLEVSE+ SELPS P+AVWT K D +
Sbjct: 444 GSGARSSFRTLKHGLEVSEIVESELPSVPSAVWTTKLTRADEFDAY 489
>sp|Q9UTT2|RSE1_SCHPO Pre-mRNA-splicing factor prp12 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp12 PE=1 SV=1
Length = 1206
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 3 CGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDD 44
CGRG S++R LR GLE +E+ SELP P A+WT+K D
Sbjct: 452 CGRGSNSSLRQLRRGLETTEIVASELPGAPIAIWTLKLNQTD 493
>sp|Q54SA7|SF3B3_DICDI Probable splicing factor 3B subunit 3 OS=Dictyostelium discoideum
GN=sf3b3 PE=3 SV=1
Length = 1256
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 3 CGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRS 42
CG G S+++VLRHGL V+ + + LP P+ +WTV + +
Sbjct: 440 CGTGLNSSLKVLRHGLSVTTITTANLPGVPSGIWTVPKST 479
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.130 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,269,030
Number of Sequences: 539616
Number of extensions: 564469
Number of successful extensions: 1350
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1336
Number of HSP's gapped (non-prelim): 14
length of query: 61
length of database: 191,569,459
effective HSP length: 34
effective length of query: 27
effective length of database: 173,222,515
effective search space: 4677007905
effective search space used: 4677007905
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)