Query psy3694
Match_columns 61
No_of_seqs 101 out of 199
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 23:12:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3694.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3694hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1898|consensus 99.8 3.3E-20 7.1E-25 146.9 2.2 61 1-61 423-483 (1205)
2 KOG1897|consensus 99.8 8.5E-19 1.8E-23 138.3 6.2 59 1-60 374-432 (1096)
3 PF10433 MMS1_N: Mono-function 99.6 7.7E-16 1.7E-20 111.8 5.0 57 1-60 326-384 (504)
4 KOG1896|consensus 98.0 8.3E-06 1.8E-10 66.9 5.1 59 1-60 504-567 (1366)
5 COG2329 Uncharacterized enzyme 49.4 34 0.00074 20.6 3.5 27 27-54 32-58 (105)
6 COG5161 SFT1 Pre-mRNA cleavage 41.5 37 0.0008 28.9 3.5 53 2-55 511-566 (1319)
7 cd02860 Pullulanase_N_term Pul 41.3 70 0.0015 18.4 4.0 20 24-43 37-56 (100)
8 KOG0301|consensus 40.9 46 0.00099 27.2 3.8 32 5-41 237-268 (745)
9 PF12793 SgrR_N: Sugar transpo 40.5 20 0.00044 22.1 1.5 14 3-16 55-68 (115)
10 PF08094 Toxin_24: Conotoxin T 39.9 13 0.00029 18.7 0.5 8 1-8 1-8 (33)
11 PF09201 SRX: SRX; InterPro: 39.0 13 0.00027 24.7 0.4 16 46-61 76-91 (148)
12 PRK10708 hypothetical protein; 33.5 38 0.00082 19.4 1.8 19 23-41 32-50 (62)
13 KOG1905|consensus 33.3 34 0.00074 25.5 2.0 32 13-44 59-90 (353)
14 PRK09729 hypothetical protein; 29.0 76 0.0016 17.8 2.6 43 13-57 3-45 (68)
15 PF10781 DSRB: Dextransucrase 28.1 52 0.0011 18.8 1.8 19 23-41 32-50 (62)
16 PF13082 DUF3931: Protein of u 27.6 41 0.00088 19.1 1.2 23 2-24 42-64 (66)
17 COG3549 HigB Plasmid maintenan 24.4 93 0.002 19.2 2.5 14 28-41 57-70 (94)
18 cd05017 SIS_PGI_PMI_1 The memb 23.6 40 0.00087 20.0 0.8 17 44-60 42-58 (119)
19 TIGR03628 arch_S11P archaeal r 23.5 14 0.00031 23.2 -1.2 29 3-31 82-112 (114)
20 cd02852 Isoamylase_N_term Isoa 22.9 1.8E+02 0.0038 17.2 5.3 34 10-43 22-58 (119)
21 PRK13626 transcriptional regul 22.0 59 0.0013 24.4 1.6 14 3-16 59-72 (552)
22 PF12215 GBA2_N: beta-Glucocer 21.5 2.9E+02 0.0063 19.2 5.3 54 4-57 75-138 (299)
23 PF10411 DsbC_N: Disulfide bon 20.8 35 0.00077 18.3 0.1 39 11-52 5-47 (57)
24 PF12421 DUF3672: Fibronectin 20.3 1.2E+02 0.0025 19.2 2.5 21 32-52 64-84 (136)
No 1
>KOG1898|consensus
Probab=99.78 E-value=3.3e-20 Score=146.86 Aligned_cols=61 Identities=51% Similarity=0.851 Sum_probs=58.8
Q ss_pred CeeecCCCCeeeEEecCCcceEEEEecCCCCcceeEEeecCCCCCCccEEEEeECCCeeeC
Q psy3694 1 MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLFHQPSISPSMIEL 61 (61)
Q Consensus 1 ~~~G~g~~ssLrvlr~Gi~v~el~ss~LP~~p~~vWT~k~~~~d~~d~ylvlSf~~~t~~~ 61 (61)
+|||+|++|+||+|||||+++|++.++||++|+++||+|.+.+|.||.|||+||++.||-|
T Consensus 423 ~~cg~~~~sslr~lR~gle~sel~~t~lp~~~ta~WTvk~~~td~ydsyivvsF~n~TlVL 483 (1205)
T KOG1898|consen 423 SACGRGPRSSLRILRNGLEVSELLVTELPGNPTATWTVKKNITDVYDSYIVVSFVNGTLVL 483 (1205)
T ss_pred hhhCcCccccchhhccccchHHHhhhccCCCCceEEEEcCccccccceEEEEEeeccEEEE
Confidence 4899999999999999999999999999999999999999999999999999999999854
No 2
>KOG1897|consensus
Probab=99.76 E-value=8.5e-19 Score=138.28 Aligned_cols=59 Identities=20% Similarity=0.406 Sum_probs=56.1
Q ss_pred CeeecCCCCeeeEEecCCcceEEEEecCCCCcceeEEeecCCCCCCccEEEEeECCCeee
Q psy3694 1 MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLFHQPSISPSMIE 60 (61)
Q Consensus 1 ~~~G~g~~ssLrvlr~Gi~v~el~ss~LP~~p~~vWT~k~~~~d~~d~ylvlSf~~~t~~ 60 (61)
+|||+++|||||++||||+++|+|+++||| ++++|++|...+++||+||||||+++|--
T Consensus 374 tCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~~eTrv 432 (1096)
T KOG1897|consen 374 TCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFISETRV 432 (1096)
T ss_pred EEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEeccceEE
Confidence 599999999999999999999999999999 69999999888899999999999999953
No 3
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=99.61 E-value=7.7e-16 Score=111.76 Aligned_cols=57 Identities=33% Similarity=0.583 Sum_probs=51.5
Q ss_pred CeeecCCCCeeeEEecCCcce--EEEEecCCCCcceeEEeecCCCCCCccEEEEeECCCeee
Q psy3694 1 MACGRGPRSTVRVLRHGLEVS--EMAVSELPSNPNAVWTVKRRSDDRVSLFHQPSISPSMIE 60 (61)
Q Consensus 1 ~~~G~g~~ssLrvlr~Gi~v~--el~ss~LP~~p~~vWT~k~~~~d~~d~ylvlSf~~~t~~ 60 (61)
+|||.|++|+||++|||++++ +++..+||+ ++++|++|...++ |.|||+||.++|+-
T Consensus 326 ~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~--~~~lv~S~~~~T~v 384 (504)
T PF10433_consen 326 ACSGAGKRGSLRILRNGIGIEGLELASSELPG-VTGIWTLKLSSSD--HSYLVLSFPNETRV 384 (504)
T ss_dssp EEESSGGG-EEEEEEESBEEE--EEEEEEEST-EEEEEEE-SSSSS--BSEEEEEESSEEEE
T ss_pred EEECcCCCCcEEEEeccCCceeeeeeccCCCC-ceEEEEeeecCCC--ceEEEEEcCCceEE
Confidence 699999999999999999999 999999999 7999999987655 99999999999984
No 4
>KOG1896|consensus
Probab=98.03 E-value=8.3e-06 Score=66.89 Aligned_cols=59 Identities=20% Similarity=0.330 Sum_probs=52.1
Q ss_pred CeeecCCCCeeeEEecCCcceEEEEecCCCCcceeEEeecCCC-----CCCccEEEEeECCCeee
Q psy3694 1 MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSD-----DRVSLFHQPSISPSMIE 60 (61)
Q Consensus 1 ~~~G~g~~ssLrvlr~Gi~v~el~ss~LP~~p~~vWT~k~~~~-----d~~d~ylvlSf~~~t~~ 60 (61)
+|+|.|++|.|.|+|+.|.++-..+.+|||- .++||++.+.. +.-|.|+++|-.++||-
T Consensus 504 ~~sGhgkngaL~V~r~sI~P~i~t~fel~Gc-~~iWtV~~~~~~~~~~~~~h~~lilS~e~~t~i 567 (1366)
T KOG1896|consen 504 ATSGHGKNGALSVIRRSIRPEIATEFELPGC-VDIWTVFIKGRKREEDNTQHLYLILSTESRTMI 567 (1366)
T ss_pred EeccCCCCcceEEEeecccceeeEEEEecCe-eeEEEEEEeccccccccCcceEEEeecccchhh
Confidence 5899999999999999999999999999996 99999997432 33489999999999984
No 5
>COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]
Probab=49.37 E-value=34 Score=20.57 Aligned_cols=27 Identities=7% Similarity=0.072 Sum_probs=20.2
Q ss_pred cCCCCcceeEEeecCCCCCCccEEEEeE
Q psy3694 27 ELPSNPNAVWTVKRRSDDRVSLFHQPSI 54 (61)
Q Consensus 27 ~LP~~p~~vWT~k~~~~d~~d~ylvlSf 54 (61)
.+||- .++--+|....+..|.|+|+|+
T Consensus 32 ~~~Gf-~~~~llr~~~~~~~~~~~vvt~ 58 (105)
T COG2329 32 EMPGF-IGFELLRPKTVEDPDEYVVVTR 58 (105)
T ss_pred cCCCc-eEEEEeecCccCCCceEEEEEE
Confidence 67887 7777777543456899999996
No 6
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]
Probab=41.53 E-value=37 Score=28.93 Aligned_cols=53 Identities=25% Similarity=0.179 Sum_probs=35.7
Q ss_pred eeecCCCCeeeEEecCCcceEEEEecCCCCcceeEEeecCCCCC---CccEEEEeEC
Q psy3694 2 ACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDR---VSLFHQPSIS 55 (61)
Q Consensus 2 ~~G~g~~ssLrvlr~Gi~v~el~ss~LP~~p~~vWT~k~~~~d~---~d~ylvlSf~ 55 (61)
..|.++.+.|-|.+..+.+.--..+..-+. ..||++|.+..+. --.|.++|=.
T Consensus 511 t~G~ds~~~l~V~~ts~~P~I~~~~~fi~~-e~vw~~kI~g~lr~~~~~~~~~ls~~ 566 (1319)
T COG5161 511 TKGSDSEAALAVEGTSLEPCICTVSSFIPL-EIVWSQKIRGYLRCSRALDFYILSRV 566 (1319)
T ss_pred eccCCCcceEEEEeccccceeeehccccch-hheeehhccceehhcceeeEEEeecc
Confidence 368899999999999888765544443332 7999999865332 2346666533
No 7
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=41.27 E-value=70 Score=18.37 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=14.6
Q ss_pred EEecCCCCcceeEEeecCCC
Q psy3694 24 AVSELPSNPNAVWTVKRRSD 43 (61)
Q Consensus 24 ~ss~LP~~p~~vWT~k~~~~ 43 (61)
...+|+....++|++.....
T Consensus 37 ~~~~m~~~~~gvw~~~v~~~ 56 (100)
T cd02860 37 ETVQMKRGENGVWSVTLDGD 56 (100)
T ss_pred eeEeeecCCCCEEEEEeCCc
Confidence 34567766689999998753
No 8
>KOG0301|consensus
Probab=40.86 E-value=46 Score=27.15 Aligned_cols=32 Identities=25% Similarity=0.552 Sum_probs=26.3
Q ss_pred cCCCCeeeEEecCCcceEEEEecCCCCcceeEEeecC
Q psy3694 5 RGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRR 41 (61)
Q Consensus 5 ~g~~ssLrvlr~Gi~v~el~ss~LP~~p~~vWT~k~~ 41 (61)
.|.++++||-..+ +-...+.||+. .||..+.-
T Consensus 237 ~gEDrtlriW~~~---e~~q~I~lPtt--siWsa~~L 268 (745)
T KOG0301|consen 237 TGEDRTLRIWKKD---ECVQVITLPTT--SIWSAKVL 268 (745)
T ss_pred ecCCceEEEeecC---ceEEEEecCcc--ceEEEEEe
Confidence 4789999999999 55566789994 99999864
No 9
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=40.50 E-value=20 Score=22.12 Aligned_cols=14 Identities=43% Similarity=0.712 Sum_probs=12.4
Q ss_pred eecCCCCeeeEEec
Q psy3694 3 CGRGPRSTVRVLRH 16 (61)
Q Consensus 3 ~G~g~~ssLrvlr~ 16 (61)
.|||++|.|+.+++
T Consensus 55 ~GRG~~S~L~~l~~ 68 (115)
T PF12793_consen 55 RGRGNRSQLTFLKS 68 (115)
T ss_pred CCCCCCCeeEEeeC
Confidence 59999999999875
No 10
>PF08094 Toxin_24: Conotoxin TVIIA/GS family; InterPro: IPR012629 This family consists of conotoxins isolated from the venom of cone snail Conus tulipa and Conus geographus. Conotoxin TVIIA, isolated from Conus tulipa displays little sequence homology with other well-characterised pharmacological classes of peptides, but displays similarity with conotoxin GS, a peptide from Conus geographus. Both these peptides block skeletal muscle sodium channels and also share several biochemical features and represent a distinct subgroup of the four-loop conotoxins [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1AG7_A 1EYO_A.
Probab=39.91 E-value=13 Score=18.66 Aligned_cols=8 Identities=50% Similarity=0.954 Sum_probs=3.5
Q ss_pred CeeecCCC
Q psy3694 1 MACGRGPR 8 (61)
Q Consensus 1 ~~~G~g~~ 8 (61)
+|+|+|+|
T Consensus 1 ~csgr~sr 8 (33)
T PF08094_consen 1 ACSGRGSR 8 (33)
T ss_dssp --B-TTSS
T ss_pred CCcCCCCC
Confidence 46777766
No 11
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=38.99 E-value=13 Score=24.72 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=11.9
Q ss_pred CccEEEEeECCCeeeC
Q psy3694 46 VSLFHQPSISPSMIEL 61 (61)
Q Consensus 46 ~d~ylvlSf~~~t~~~ 61 (61)
=.-|.|++|+.+|+||
T Consensus 76 PeLy~VvTyaeqsleL 91 (148)
T PF09201_consen 76 PELYYVVTYAEQSLEL 91 (148)
T ss_dssp TTEEEEEEESS--HHH
T ss_pred CcEEEEEEeccccchh
Confidence 3689999999999875
No 12
>PRK10708 hypothetical protein; Provisional
Probab=33.50 E-value=38 Score=19.36 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=14.7
Q ss_pred EEEecCCCCcceeEEeecC
Q psy3694 23 MAVSELPSNPNAVWTVKRR 41 (61)
Q Consensus 23 l~ss~LP~~p~~vWT~k~~ 41 (61)
+.-+.||.-|.+||=....
T Consensus 32 MyLvaL~dYP~GiWFFNE~ 50 (62)
T PRK10708 32 MYLVSLEDYPLGIWFFNEA 50 (62)
T ss_pred EEEEEcCcCCCceEEEecc
Confidence 4456799999999987643
No 13
>KOG1905|consensus
Probab=33.30 E-value=34 Score=25.49 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=21.9
Q ss_pred EEecCCcceEEEEecCCCCcceeEEeecCCCC
Q psy3694 13 VLRHGLEVSEMAVSELPSNPNAVWTVKRRSDD 44 (61)
Q Consensus 13 vlr~Gi~v~el~ss~LP~~p~~vWT~k~~~~d 44 (61)
|+--|-+|+.-+.+|=--.|+||||+-....|
T Consensus 59 vv~tGAGISTaa~IPDfRGp~GVWTL~~kG~~ 90 (353)
T KOG1905|consen 59 VVYTGAGISTAAGIPDFRGPQGVWTLQQKGKD 90 (353)
T ss_pred EEEeCCccccccCCCCccCCCceeehhhcCcc
Confidence 44457777776666544458999999876544
No 14
>PRK09729 hypothetical protein; Provisional
Probab=28.98 E-value=76 Score=17.80 Aligned_cols=43 Identities=14% Similarity=0.057 Sum_probs=30.5
Q ss_pred EEecCCcceEEEEecCCCCcceeEEeecCCCCCCccEEEEeECCC
Q psy3694 13 VLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLFHQPSISPS 57 (61)
Q Consensus 13 vlr~Gi~v~el~ss~LP~~p~~vWT~k~~~~d~~d~ylvlSf~~~ 57 (61)
.+++|+++.-+.+.-++..|.+|-..... ....+-+-|.+-.+
T Consensus 3 mV~~GLGIsIlP~l~l~~~~~~v~~~~L~--~~~~R~IgLa~~~~ 45 (68)
T PRK09729 3 FIRQGLGIALQPELTLKSIAGELCSVPLE--PTFYRQISLLAKEK 45 (68)
T ss_pred HHHcCCcEEEchHHHhccCCCCEEEEECC--CCceEEEEEEEeCC
Confidence 46789999988887788777888887773 44555566655443
No 15
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=28.11 E-value=52 Score=18.78 Aligned_cols=19 Identities=21% Similarity=0.569 Sum_probs=14.5
Q ss_pred EEEecCCCCcceeEEeecC
Q psy3694 23 MAVSELPSNPNAVWTVKRR 41 (61)
Q Consensus 23 l~ss~LP~~p~~vWT~k~~ 41 (61)
+.-+.||.-|.+||=....
T Consensus 32 MYLvaL~dYP~GiWFFNE~ 50 (62)
T PF10781_consen 32 MYLVALEDYPAGIWFFNEK 50 (62)
T ss_pred EEEEEcCcCCcceEEEecC
Confidence 4456799999999987643
No 16
>PF13082 DUF3931: Protein of unknown function (DUF3931)
Probab=27.64 E-value=41 Score=19.12 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=18.9
Q ss_pred eeecCCCCeeeEEecCCcceEEE
Q psy3694 2 ACGRGPRSTVRVLRHGLEVSEMA 24 (61)
Q Consensus 2 ~~G~g~~ssLrvlr~Gi~v~el~ 24 (61)
+||.-++|.--||+|=|+.+|.+
T Consensus 42 lcgetpdgrrlvlthmistdefa 64 (66)
T PF13082_consen 42 LCGETPDGRRLVLTHMISTDEFA 64 (66)
T ss_pred EEccCCCCcEEEEEEEecchhhc
Confidence 68989999888888888877764
No 17
>COG3549 HigB Plasmid maintenance system killer protein [General function prediction only]
Probab=24.39 E-value=93 Score=19.18 Aligned_cols=14 Identities=7% Similarity=0.370 Sum_probs=12.1
Q ss_pred CCCCcceeEEeecC
Q psy3694 28 LPSNPNAVWTVKRR 41 (61)
Q Consensus 28 LP~~p~~vWT~k~~ 41 (61)
|-+.++|.|+++.+
T Consensus 57 L~gd~~g~ySIrvN 70 (94)
T COG3549 57 LGGDLKGLYSIRVN 70 (94)
T ss_pred cCCCccCcEEEEEC
Confidence 66789999999976
No 18
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=23.65 E-value=40 Score=19.95 Aligned_cols=17 Identities=35% Similarity=0.245 Sum_probs=14.4
Q ss_pred CCCccEEEEeECCCeee
Q psy3694 44 DRVSLFHQPSISPSMIE 60 (61)
Q Consensus 44 d~~d~ylvlSf~~~t~~ 60 (61)
++.|-+|++|+.++|.|
T Consensus 42 ~~~dl~I~iS~SG~t~e 58 (119)
T cd05017 42 DRKTLVIAVSYSGNTEE 58 (119)
T ss_pred CCCCEEEEEECCCCCHH
Confidence 46789999999999875
No 19
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=23.45 E-value=14 Score=23.17 Aligned_cols=29 Identities=28% Similarity=0.620 Sum_probs=21.4
Q ss_pred eecCCCCeeeEE-ecCCcceEEEEe-cCCCC
Q psy3694 3 CGRGPRSTVRVL-RHGLEVSEMAVS-ELPSN 31 (61)
Q Consensus 3 ~G~g~~ssLrvl-r~Gi~v~el~ss-~LP~~ 31 (61)
-|.|.++.||-| +.|+.+..+-.. |+|-+
T Consensus 82 ~G~Gr~~air~l~~~glkI~~I~DvTpiPhN 112 (114)
T TIGR03628 82 PGPGAQAAIRALARAGLRIGRIEDVTPIPHD 112 (114)
T ss_pred CCCcHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence 367888888888 778988887654 56654
No 20
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=22.86 E-value=1.8e+02 Score=17.19 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=19.3
Q ss_pred eeeEEecCCcceEEEEecCCCCc---ceeEEeecCCC
Q psy3694 10 TVRVLRHGLEVSEMAVSELPSNP---NAVWTVKRRSD 43 (61)
Q Consensus 10 sLrvlr~Gi~v~el~ss~LP~~p---~~vWT~k~~~~ 43 (61)
+|.+...+-...+....+|.... .++|.+..+..
T Consensus 22 ~L~lf~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~ 58 (119)
T cd02852 22 ELLLFDPGDGDEPALEIELDPSVNRTGDVWHVFVEGL 58 (119)
T ss_pred EEEEEeCCCCCCceEEEeCcCcccccCCEEEEEECCC
Confidence 34444443333344556675433 58999987653
No 21
>PRK13626 transcriptional regulator SgrR; Provisional
Probab=22.04 E-value=59 Score=24.42 Aligned_cols=14 Identities=43% Similarity=0.669 Sum_probs=8.1
Q ss_pred eecCCCCeeeEEec
Q psy3694 3 CGRGPRSTVRVLRH 16 (61)
Q Consensus 3 ~G~g~~ssLrvlr~ 16 (61)
.|||++|.|+.+++
T Consensus 59 ~GRg~~s~l~~~~~ 72 (552)
T PRK13626 59 AGRGKRSRLTFLYT 72 (552)
T ss_pred CCCCCceEEEEEEC
Confidence 35666666666554
No 22
>PF12215 GBA2_N: beta-Glucocerebrosidase 2 N terminal; InterPro: IPR024462 This entry represents a domain found in beta-glucosidase 2 (also known as beta-glucocerebrosidase 2, acid beta-glucosidase, D-glucosyl-N-acylsphingosine glucohydrolase, or GCase), which is typically between 320 to 354 amino acids in length. It is found just after the extreme N terminus. This protein is located in the ER. The N-terminal is thought to be the luminal domain while the C-terminal is the cytosolic domain []. The catalytic domain of GBA-2 is unknown.
Probab=21.46 E-value=2.9e+02 Score=19.17 Aligned_cols=54 Identities=24% Similarity=0.245 Sum_probs=31.5
Q ss_pred ecCCCCeeeEE-ecCCcceEEEEec-CCCC------cceeEEee--cCCCCCCccEEEEeECCC
Q psy3694 4 GRGPRSTVRVL-RHGLEVSEMAVSE-LPSN------PNAVWTVK--RRSDDRVSLFHQPSISPS 57 (61)
Q Consensus 4 G~g~~ssLrvl-r~Gi~v~el~ss~-LP~~------p~~vWT~k--~~~~d~~d~ylvlSf~~~ 57 (61)
|..+++.+..- ..++.++--+-|| +|.+ |-++++.+ ...+++.+--|..||.|.
T Consensus 75 ~lyP~a~~~y~~~~~v~v~~~~~SP~IP~d~k~SSlP~~vf~~~v~N~~~~~~~vsi~~s~~N~ 138 (299)
T PF12215_consen 75 GLYPRAWTEYEDDFPVKVTCEQFSPFIPHDYKDSSLPVAVFEWTVENTSDEPVEVSIAFSWPNG 138 (299)
T ss_pred EECceEEEEEecCCCcEEEEEEECCccCCChhhcCCCeEEEEEEEEcCCCCcEEEEEEEEeeCC
Confidence 45555555544 4556666555565 4543 44555554 444566777777787763
No 23
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=20.81 E-value=35 Score=18.33 Aligned_cols=39 Identities=21% Similarity=0.195 Sum_probs=21.3
Q ss_pred eeEEecCCcceEEEEecCCCCcceeEEeecCC----CCCCccEEEE
Q psy3694 11 VRVLRHGLEVSEMAVSELPSNPNAVWTVKRRS----DDRVSLFHQP 52 (61)
Q Consensus 11 Lrvlr~Gi~v~el~ss~LP~~p~~vWT~k~~~----~d~~d~ylvl 52 (61)
|+-+..|+.++.+..+|+||. -.|.+ + .. .|+--+|++.
T Consensus 5 l~~~~p~~~v~~v~~spi~Gl-yeV~~-~-~~~i~Y~~~dg~yli~ 47 (57)
T PF10411_consen 5 LKKAFPGLKVESVSPSPIPGL-YEVVL-K-GGGILYVDEDGRYLIQ 47 (57)
T ss_dssp HHCT--T-TCEEEEE-SSTTE-EEEEE---TTEEEEEETTSSEEEE
T ss_pred HHhhcCCCceeEEEcCCCCCe-EEEEE-C-CCeEEEEcCCCCEEEE
Confidence 334456899999999999885 44444 1 11 1344567765
No 24
>PF12421 DUF3672: Fibronectin type III protein ; InterPro: IPR021034 This entry represents a region of bacterial and viral proteins that are typically between 126 and 146 amino acids in length. The signature is found at the C terminus in association with PF09327 from PFAM and PF00041 from PFAM. There are two completely conserved G residues that may be functionally important. Many of the proteins in this entry are annotated as fibronectin type III however there is little accompanying literature to confirm this. It is also found in Host specificity protein J from Enterobacteria phage lambda (Bacteriophage lambda).
Probab=20.31 E-value=1.2e+02 Score=19.22 Aligned_cols=21 Identities=19% Similarity=0.026 Sum_probs=16.4
Q ss_pred cceeEEeecCCCCCCccEEEE
Q psy3694 32 PNAVWTVKRRSDDRVSLFHQP 52 (61)
Q Consensus 32 p~~vWT~k~~~~d~~d~ylvl 52 (61)
|..-|++....+.+||++|++
T Consensus 64 ~~~~~~~~~~~~~~fdR~ivi 84 (136)
T PF12421_consen 64 PSGTITVIYIDDQPFDRQIVI 84 (136)
T ss_pred eeEEEEEEEeCCccccEEEEE
Confidence 455677777666789999999
Done!